BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus Liberibacter asiaticus str. psy62] (133 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 231 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD ++K+ + GF V A +A E + P+ +++D + + Sbjct: 1 MPLVLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQH-RPDVIILDLMLPALD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ P ++ V L E + G GA+ ++ KPF+ L ++ Sbjct: 60 GFTVCELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQL 119 Query: 119 QMQKSKDENQFL 130 + ++S+ E + L Sbjct: 120 RRRQSQAEREKL 131 >gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 231 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ ++ GF V A + E P+ +++D + G+ Sbjct: 1 MPKILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTE-APDLIILDIMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + Q P + + L + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLSVCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARL 119 Query: 119 QMQ 121 + Q Sbjct: 120 RRQ 122 >gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 241 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A + E P+ +++D G Sbjct: 16 RILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDML-SEPYPDLVLLDWMFPGGSGI 74 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 75 QLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVMRR 134 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 135 AAPTALEEPID 145 >gi|86610346|ref|YP_479108.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558888|gb|ABD03845.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 373 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 7/138 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R V + G+ V A++ E E L+P ++ D M + Sbjct: 1 MTTILIVDDDPTIRLVLKRSLERQGYTVEMASNGSEGLEQAHL-LVPGLIICDWMMPDMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + F L + E I G AGA+ FL KP + LR +R Sbjct: 60 GLEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGL 119 Query: 119 QMQK----SKDENQFLDA 132 ++ + + + L A Sbjct: 120 RLHQLSYDLQQQTARLRA 137 >gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 229 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R++ + + G+ EA A E E P+ +++D + G Sbjct: 3 KRVLLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVV-EPYPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++Q D+ + + + E + G +GA+ ++ KPF+ + L ++ + + Sbjct: 62 VQLAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVIR 121 Query: 120 MQKSKDENQFLD 131 ++ ++ Sbjct: 122 RVTPTSSDELIE 133 >gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 264 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ R G+ V A EA + P+ +V+D M G+ Sbjct: 33 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATP-PDLVVLDIQMPGMDG 91 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 A R G+ V V L + G AGA+ +L+KPF + L +R L + Sbjct: 92 LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 151 Query: 121 -----QKSKDENQFLD 131 Q++ D+ + L Sbjct: 152 SYAVAQQAADDEETLA 167 >gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces clavuligerus ATCC 27064] Length = 342 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ + G+ A +A E P+ LV+D M + Sbjct: 108 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAES-YRPDLLVLDIQMPRMDGL 166 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ V V L + G AGA+ +L+KPF + L +R L + Sbjct: 167 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 224 >gi|158334336|ref|YP_001515508.1| two-component response regulator [Acaryochloris marina MBIC11017] gi|158304577|gb|ABW26194.1| two-component response regulator, putative [Acaryochloris marina MBIC11017] Length = 375 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D I + + R G+ V A+ E ++L P ++ D M Sbjct: 1 MVKILIIDDDPITQLLLRRTLEKQGYQVTVASDGQEGLSKA-QQLCPALIICDWMMPVLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ P + F L D E IAG AGA+ FL KP + LR +R Sbjct: 60 GIGVCQQLKSNPQLSATFFILLTSRSDLEDRIAGLNAGADEFLTKPIDMSELRARVRAGL 119 Query: 119 QM----QKSKDENQFLDA 132 ++ Q ++ Q L+A Sbjct: 120 RLYHLNQDLHEQKQRLEA 137 >gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 340 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ + G+ A +A E P+ LV+D M + Sbjct: 106 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAES-YRPDLLVLDIQMPRMDGL 164 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ V V L + G AGA+ +L+KPF + L +R L + Sbjct: 165 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 222 >gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 229 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA + +E P +V+D M G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKV-REPYPELIVLDWMMPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI ++Q + + V L + E + G AGA+ ++ KPF+ + L + + + Sbjct: 62 IQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMR 121 Query: 120 MQKSKDENQFLD 131 ++ ++ Sbjct: 122 RVSPTSVDEVIE 133 >gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica KT99] gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica KT99] Length = 229 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + + GF A A E P+ +++D G Sbjct: 4 KILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMI-SEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SSPTSSEEPID 133 >gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas veronii B565] gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB [Aeromonas veronii B565] Length = 229 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA + +E P +V+D M G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKV-REPYPELIVLDWMMPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI ++Q + + V L + E + G AGA+ ++ KPF+ + L + + + Sbjct: 62 IQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMR 121 Query: 120 MQKSKDENQFLD 131 ++ ++ Sbjct: 122 RVSPTSVDEVIE 133 >gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 244 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ R G+ V A EA + P+ +V+D M G+ Sbjct: 13 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATP-PDLVVLDIQMPGMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 A R G+ V V L + G AGA+ +L+KPF + L +R L + Sbjct: 72 LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 131 Query: 121 -----QKSKDENQFLD 131 Q++ D+ + L Sbjct: 132 SYAVAQQAADDEETLA 147 >gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 248 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + VR + R + G+ V A++ E + P+ +++D M G+ Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGL-LEARHHRPDLVLLDVMMPGMD 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V V +L + G GA+ ++ KPF+ L +R + Sbjct: 81 GL-EFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR 139 Query: 121 QKSKDENQFLDA 132 N L A Sbjct: 140 SSEPLPNAVLRA 151 >gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB] gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain [Syntrophus aciditrophicus SB] Length = 245 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ GF V +A EA + P+ +++D + G Sbjct: 15 KRILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNK-PDLVILDLMLPGVSG 73 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ VR+ + V L + + + G GA+ ++ KPFN L +R + + Sbjct: 74 LDICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLR 133 Query: 120 MQKSK 124 + Sbjct: 134 RSSQR 138 >gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] Length = 273 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A E E +ELLP+ ++ D M Sbjct: 47 RLLLVDDEPGLRTAVKAYLEDEGFAVTTANDGEEGWEKA-QELLPDVVISDVMMPCCDGY 105 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V +L + IAG +AG + ++ KPF+ + L +R + Sbjct: 106 GLLRKLRADERLGGTPVIFLTAKGMTADRIAGFQAGCDDYIPKPFDPDELVARVRNAVRR 165 Query: 121 Q-KSKDENQFLD 131 Q + E Sbjct: 166 QERLLAEAARFA 177 >gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 229 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A E E P+ +++D G Sbjct: 4 RILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEML-SEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SSPTSLEEPID 133 >gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V + + GF V A+S EA ++ P+ +++D M G+ Sbjct: 73 RILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQP-PDLVILDIMMPGMDGL 131 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R ++ V +L + G AGA+ +++KPF E L +R L + + Sbjct: 132 EVLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRRHQ 191 Query: 123 SKDEN 127 ++ Sbjct: 192 AERPQ 196 >gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis Nb-231] gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis Nb-231] Length = 228 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ +R++ + V +A S + E++P+ +++D + G+ Sbjct: 1 MVKILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLD-EIVPDLVLLDWMLPGMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F V++ P DV + L + E I G GA+ F+ KPF+ L ++ + Sbjct: 60 GIDFARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVL 119 Query: 119 QMQKSKDENQFLD 131 + ++ ++ Sbjct: 120 RRAAPLSGDERIE 132 >gi|328952021|ref|YP_004369355.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452345|gb|AEB08174.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 382 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+ D + ++ R + G+ + A EA + KE P+ L++D M Sbjct: 29 KKILIADDNPDNVELLRKRLSAQGYQIAAAFDGEEALQAVLKEN-PDLLILDIMMPKLDG 87 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + +++ ++ V L + + + G GA+ ++ KPFN + L +R L Sbjct: 88 YEVLRRLKKQDEYRNLPVILLTAKKEIPDKLKGLDIGADDYITKPFNPQELLARVRSLMA 147 Query: 120 MQKSKD---ENQFLDAI 133 +++ ++ +++ L A+ Sbjct: 148 LREEQERRAQDERLSAL 164 >gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI] gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 357 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R+V R + GF V EAT EA + L++D M GV Sbjct: 127 TKILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLL-TGGKWDLLILDLMMPGVDG 185 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ T + + L I G GA+ +++KPF+ L ++ + + Sbjct: 186 WSVCREVRK---TTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLR 242 Query: 120 MQK 122 + Sbjct: 243 RSQ 245 >gi|315181014|gb|ADT87928.1| Response regulator [Vibrio furnissii NCTC 11218] Length = 203 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 231 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD +R++ + G+ A + EA +E+ + +++D + Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEAL-KLIREIKFDLILLDLMLPEIDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ +D+ V + + + + G GA+ ++ KPF+ L ++ L + Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 MQKSKDENQFLD 131 K E + Sbjct: 123 RSNVKKEENIIK 134 >gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 244 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ R G+ V A EA P+ +V+D M G+ Sbjct: 13 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATP-PDLVVLDIQMPGMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 A R G+ V V L + G AGA+ +L+KPF + L +R L + Sbjct: 72 LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 131 Query: 121 -----QKSKDENQFLD 131 Q++ D+ + L Sbjct: 132 SYAVAQQAADDEETLA 147 >gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB [Nitrosococcus oceani ATCC 19707] gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family [Nitrosococcus oceani ATCC 19707] gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD +R++ G+ A +A + E P+ +++D + G+ Sbjct: 4 TILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRI-NESHPDLILLDWMLPGISGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P ++ V L + E + G GA+ ++ KPF+ L ++ + + Sbjct: 63 DLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + ++ Sbjct: 123 SAPLASGEVIE 133 >gi|110640660|ref|YP_668388.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 536] gi|110342252|gb|ABG68489.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 536] Length = 243 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida subsp. salmonicida A449] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA + E P +V+D M G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVC-EPYPELIVLDWMMPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI ++Q + + V L + E + G AGA+ ++ KPF+ + L + + + Sbjct: 62 IQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMR 121 Query: 120 MQKSKDENQFLD 131 ++ ++ Sbjct: 122 RVSPTSVDEVIE 133 >gi|257129263|gb|ACV42481.1| putative adenylate/guanylate cyclase [Lyngbya majuscula 19L] Length = 1156 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + R+V + + + + AT+ EA E P+ +++D M + Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A +RQ L +++ V L ++ G G N +L KP ++ L ++ ++ Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLRL 865 Query: 121 QK 122 K Sbjct: 866 SK 867 >gi|332712429|ref|ZP_08432355.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332348724|gb|EGJ28338.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1156 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + R+V + + + + AT+ EA E P+ +++D M + Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A +RQ L +++ V L ++ G G N +L KP ++ L ++ ++ Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLRL 865 Query: 121 QK 122 K Sbjct: 866 SK 867 >gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 232 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R + GF V A+ +A + +KE P+ +++D + G+ Sbjct: 5 KILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKE-QPDLVILDIMLPGIDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R+ D+ V L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 64 EVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLRR 123 Query: 121 Q-KSKDENQFLDA 132 K + ++ + A Sbjct: 124 ADKVERSDKIIKA 136 >gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD +R++ + G+ A + EA +E+ + +++D + Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEAL-KVIREIKFDLILLDLMLPEIDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ +D+ V + + + + G GA+ ++ KPF+ L ++ L + Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 MQKSKDENQFLD 131 K E + Sbjct: 123 RSNVKKEENIIK 134 >gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD +R++ + G+ A + EA + +E+ + +++D + Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKII-REIKFDLILLDLMLPEIDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ +D+ V + + + + G GA+ ++ KPF+ L ++ L + Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 MQKSKDENQFLD 131 K E + Sbjct: 123 RSNVKKEENIIK 134 >gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 244 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ R G+ V A EA P+ +V+D M G+ Sbjct: 13 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATP-PDLVVLDIQMPGMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ V V L + G AGA+ +L+KPF + L +R L + Sbjct: 72 LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130 >gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD +R++ + G+ A + EA + +E+ + +++D + Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKII-REIKFDLILLDLMLPEIDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ +D+ V + + + + G GA+ ++ KPF+ L ++ L + Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 MQKSKDENQFLD 131 K E + Sbjct: 123 RSNVKKEENIIK 134 >gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 229 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A + E P+ +++D G Sbjct: 4 RILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDML-TEPYPDLVLLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + E + G GA+ F+ KPF+ + L ++ + + Sbjct: 63 QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVMRR 122 >gi|86605678|ref|YP_474441.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86554220|gb|ABC99178.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 374 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 7/138 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R V + G+ V A+ E E L P ++ D M + Sbjct: 1 MTAILIVDDDPTIRLVLKRSLERQGYTVEMASGGLEGLEKAHL-LTPGLIICDWMMPDMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + F L + E I G AGA+ FL KP + LR +R Sbjct: 60 GLEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGL 119 Query: 119 QMQK----SKDENQFLDA 132 ++ + + + L A Sbjct: 120 RLHQLSYDLQQQTARLRA 137 >gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family [Nitrosococcus watsonii C-113] Length = 231 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 56/136 (41%), Gaps = 6/136 (4%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M ++L+VD +R++ G+ A +A + E P+ +++D + Sbjct: 1 MKMAATILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQI-NEFRPDLILLDWMLP 59 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ +++ P ++ V L + E + G GA+ ++ KPF+ L ++ Sbjct: 60 GISGVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIK 119 Query: 116 ELPQMQKSKDENQFLD 131 + + + ++ Sbjct: 120 AVLRRSAPLLSGEVIE 135 >gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 239 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + ++ R G+ V A + E E P+ +V+D + G+ Sbjct: 1 MPKILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAE-RPDLIVLDVMLPGMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + + ++ V L + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARL 119 Query: 119 QMQKSKDENQFLDAI 133 + + K+E + +A+ Sbjct: 120 RRIQ-KEEGREREAV 133 >gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 231 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD +R++ + G+ A + EA +E+ + +++D + Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNII-REIKFDLILLDLMLPEIDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ +D+ V + + + + G GA+ ++ KPF+ L ++ L + Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 MQKSKDENQFLD 131 K E + Sbjct: 123 RSNVKKEENIIK 134 >gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 229 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ +R++ + + GF A + E P+ +++D + G Sbjct: 4 NILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAI-SEPYPDLVLLDWMLPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + ++ Sbjct: 123 SAPTRLEEAVE 133 >gi|91779864|ref|YP_555072.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91692524|gb|ABE35722.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1651 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LL+VD + +R+ + G V AT A E +E P+ ++ D M Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHEVRLATDGQAALEAARQE-RPDLVLSDVMMPRLDGF 719 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P D V L E + G GA+ +L KPF+ L + Q+ Sbjct: 720 GLLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVSGNLQL 779 Query: 121 QKSKDENQ 128 + + E + Sbjct: 780 ARLRRETE 787 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 ++L+V+ VR + +D G+ V +A A E + + L D M G L Sbjct: 1378 TVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLRS 1437 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118 E + + V + D + +G G L KP+ E L +R + Sbjct: 1438 TELAR--KARERLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKIRYVL 1494 Query: 119 QMQKSKD 125 Q Q + Sbjct: 1495 QTQNPQA 1501 Score = 62.1 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 13/123 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ +VR L F F + EA +A + E + ++ D + G Sbjct: 1536 RILLVEDDELVRASTAELLRMFEFDILEAEGEHDA-KQILSEHAISVMLTDVGLAGKSGV 1594 Query: 63 IAHVRQMPLGTDVFVYYLLMEV---DFEKMI---AGARAGANSFLLKPFNRETLRFAMRE 116 + D+ V +L E+ L KP++ L A++ Sbjct: 1595 DLALEVCAGRPDLRVIFLTGYDLVLTPEQRKVLPHAI------LLRKPYDLLDLIDALKT 1648 Query: 117 LPQ 119 + Sbjct: 1649 PLR 1651 >gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 231 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD +R++ + G+ A + EA + +E+ + +++D + Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKII-REIKFDLILLDLMLPEIDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ +D+ V + + + + G GA+ ++ KPF+ L ++ L + Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 MQKSKDENQFLD 131 K E + Sbjct: 123 RSNVKKEENIIK 134 >gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 228 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ R++ ++ GF V A E P+ +++D M G+ Sbjct: 5 KILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEA-FKPDIVLLDLMMPGMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + I G GA+ +++KPF+ L ++ + + Sbjct: 64 EVCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAVLRR 123 Query: 121 QKSKD 125 ++ Sbjct: 124 AGGRE 128 >gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1336 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD I +V + + V +AT+ EA E E +P+ +++D M + Sbjct: 872 KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 931 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + + L + ++ G GAN +L KP N+E L ++ ++ Sbjct: 932 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIRI 991 Query: 121 QKSKDE 126 +K + E Sbjct: 992 KKLRTE 997 >gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family [Treponema succinifaciens DSM 2489] Length = 231 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 56/123 (45%), Gaps = 4/123 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ ++ + F A + +A E C + P+ +++D + + Sbjct: 1 MK-ILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELC-RNKNPDLVILDLMLPDMS 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++ + + + + ++ G GA+ ++ KPF+ + L ++ + Sbjct: 59 GLDICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVL 118 Query: 119 QMQ 121 + + Sbjct: 119 RRK 121 >gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 231 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 59/129 (45%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + + + + GF V AT+ + E KE P+ +++D + G+ Sbjct: 3 KNILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEH-PDLMILDLMLPGMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ D+ + L + + ++ G GA ++ KPF+ + L ++ + + Sbjct: 62 LEVCETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVLR 121 Query: 120 MQKSKDENQ 128 + DE + Sbjct: 122 RYEQGDETE 130 >gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 277 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD V +V + G++V A A + P+ +V+D + G+ Sbjct: 20 TRILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAH-RPDLVVLDLMLPGMDG 78 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G V V L D + I G GA+ ++ KPF+ L ++ + + Sbjct: 79 LEVCRRLRENGP-VPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRRA 137 Query: 122 K 122 + Sbjct: 138 R 138 >gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + G+ A A + E P+ +++D G Sbjct: 4 RILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDML-TEPYPDLVLLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + E + G GA+ F+ KPF+ + L ++ + + Sbjct: 63 QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122 >gi|220935638|ref|YP_002514537.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996948|gb|ACL73550.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 216 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+V+ +R++ GF V EA EA+E LP+ +++D + G Sbjct: 8 KTVLIVEDEPAIREMVSFALARAGFEVDEAVDGGEAQERI-ASRLPDMILLDWMLPGTSG 66 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +++ DV + L + + + G AG + ++ KPF+ L ++ + + Sbjct: 67 IDLARRLKRDEYTRDVPIIMLTARGEEDDRVGGLEAGVDDYVTKPFSPRELVARIKAVMR 126 Query: 120 MQKSKDENQFLD 131 ++E++ L+ Sbjct: 127 RTVPENEDKPLE 138 >gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 226 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D +R++ + G+ V A E + + +++D + + Sbjct: 1 MEKILVIDDEENIRELIKFNLETAGYRVELAADGEEGWDRL--NDSIDLIILDLMLPRID 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR D+ + L + + I G GA+ ++ KPF+ L ++ + Sbjct: 59 GLSFCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVL 118 Query: 119 QMQKSKDE 126 + + +E Sbjct: 119 RRVQKNEE 126 >gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 234 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 7/138 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ VR V H + G A E + +++D + G+ Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 61 E--FIAHVRQ-MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V V L D ++ G GA+ ++ KPF+ L +R Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 118 PQMQKSKD----ENQFLD 131 + Q+ E + L+ Sbjct: 121 LRRQRMNAQASPEQRKLE 138 >gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] Length = 1132 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + ++ + G+ V A S +A + +++ P+ +++D M + E Sbjct: 721 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQAIDIVQQQ-RPDLILLDIMMPEMSGYE 779 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ ++ + L + I G GAN +L KPFN+E L ++ Q Sbjct: 780 VCTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQAS 839 Query: 122 KSKDENQF 129 K++ E Q Sbjct: 840 KTEQEKQR 847 >gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia kristensenii ATCC 33638] gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia kristensenii ATCC 33638] Length = 279 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 53 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 111 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 112 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 171 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 172 RISPMAVEEVIE 183 >gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905] Length = 229 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 S + ++ Sbjct: 122 RISSMAVEEVIE 133 >gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM 2380] gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM 2380] Length = 230 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + GF V A + E E E P+ +V+D + G+ Sbjct: 4 KHILVVEDEEDILALLHYNLVREGFRVSLAGTGEEGLETL-AEDPPDLVVLDLMLPGMDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ + V + + + ++AG GA+ ++ KPF+ + L +R + + Sbjct: 63 LQVCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSVLR 122 Query: 120 MQKSKDE 126 ++S DE Sbjct: 123 RRESADE 129 >gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] Length = 237 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++++ + GF V A + +A ++E P+ +V+D + G+ Sbjct: 11 TILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQRE-APDLVVLDVMLPGMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ P + + L D + + AG GA+ ++ KPF+ + L ++ + Sbjct: 70 QICKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALRR 129 Query: 121 QKSKDENQ 128 + D+++ Sbjct: 130 SRELDQDE 137 >gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 229 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|284051798|ref|ZP_06382008.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 558 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD I +V + + V +AT+ EA E E +P+ +++D M + Sbjct: 94 KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 153 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + + L + ++ G GAN +L KP N+E L ++ ++ Sbjct: 154 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIRI 213 Query: 121 QKSKDE 126 +K + E Sbjct: 214 KKLRTE 219 >gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 230 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D V ++ + G+ VF A + EA + P+ +V+D M Sbjct: 1 MSKILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKA-NSTKPDLIVLDLMMPEID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R V + L + + I G GA+ ++ KPFN + ++ + Sbjct: 60 GLEVCRQIRMHSR---VPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 229 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA] gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA] gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 110-3] gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H263] Length = 229 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD +R++ + G+ + A + EA +E+ + +++D + Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNII-REIKFDLILLDLMLPEIDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ +D+ V + + + + G GA+ ++ KPF+ L ++ L + Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122 Query: 120 MQKSKDENQFLD 131 K E + Sbjct: 123 RSNFKKEENIIK 134 >gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 230 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ ++ G+ V A +A + KE P+ +++D + G+ Sbjct: 5 KILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKEN-PDLILLDLMLPGIDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + + + G G + +++KPF+ L ++ + + Sbjct: 64 EVCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAVLRR 123 Query: 121 QKSKDENQF 129 + E + Sbjct: 124 STEQPEPRR 132 >gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 237 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + G+ V + +S EA E C K P+ +V D M + Sbjct: 1 MKKILVVDDDRTLRITLTRALENMGYQVQQVSSGAEALEACVKNP-PDLVVSDVMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R P G + +L + + E I G GA+ +L+KP N L + Sbjct: 60 GIEFCRRLRATPSGQLMPFIFLSGKGELEDRIHGHSIGADDYLIKPVNPRELAAKIEAQL 119 Query: 119 QMQK 122 + + Sbjct: 120 ERTR 123 >gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 249 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V +V + G++V A A P+ +V+D + G+ Sbjct: 16 RILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHW-PDLVVLDLMLPGMDGL 74 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V L D + I G GA+ ++ KPF+ L + + + + Sbjct: 75 EVCRRMRGHGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSR 133 Query: 123 SKDENQFLDA 132 L A Sbjct: 134 PAAPGHRLGA 143 >gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 233 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + K+ R GF V A A +E P +V+D + G+ Sbjct: 3 RTILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEH-PALMVLDLMLPGMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ PL + + L V+ + G GA+ ++ KPF+ L +R + + Sbjct: 62 LDVTRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLR 121 Query: 120 MQK 122 + Sbjct: 122 RSE 124 >gi|296162067|ref|ZP_06844865.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295887688|gb|EFG67508.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 1648 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LL+VD + +R+ + G V AT A E +E P+ ++ D M Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHDVRLATDGQAALEAARQE-RPDLVLSDVMMPRLDGF 719 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P D V L E + G GA+ +L KPF+ L + Q+ Sbjct: 720 GLLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVSGNLQL 779 Query: 121 QKSKDENQ 128 + + E + Sbjct: 780 ARLRRETE 787 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 ++L+V+ VR + +D G+ V +A A E + + L D M G L Sbjct: 1378 TVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLRS 1437 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118 E + + V + D + +G G L KP+ E L +R + Sbjct: 1438 TELAR--KARERLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKIRYVL 1494 Query: 119 QMQKSKD 125 Q Q + Sbjct: 1495 QTQNPQA 1501 Score = 62.1 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 13/123 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ ++R L F F + EA +A + E + ++ D + G Sbjct: 1533 RILLVEDDELIRASTAELLRMFDFDILEAEGEHDA-KQILSEHAISVMLTDVGLAGKSGV 1591 Query: 63 IAHVRQMPLGTDVFVYYLLMEV---DFEKMI---AGARAGANSFLLKPFNRETLRFAMRE 116 + + D+ V +L + L KP++ L A++ Sbjct: 1592 DLALEVCAVRPDLRVIFLTGYDLVLTPAQRKVLPHAI------LLRKPYDLLDLIDALKT 1645 Query: 117 LPQ 119 + Sbjct: 1646 PLR 1648 >gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032] gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB [Cronobacter turicensis z3032] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 ++ ++ Sbjct: 122 RISPMAVDEVIE 133 >gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + K+ R GF V A A +E P+ +V+D + G+ Sbjct: 1 MKRTILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEH-PSLIVLDLMLPGM 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +RQ PL V + L V+ + G GA+ ++ KPF+ L +R + Sbjct: 60 DGLDVTRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAV 119 Query: 118 PQMQK 122 + + Sbjct: 120 LRRIE 124 >gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197] gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1617] gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae] gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae Sd197] gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1617] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894] gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 ++ ++ Sbjct: 122 RISPMAVDEVIE 133 >gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A +E P+ +++D G Sbjct: 4 RILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQL-QEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 AAPTRLEETID 133 >gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + K+ + GF V A+ A E + P+ +V+D + + Sbjct: 4 KKVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHP-PDLIVLDLMLPKMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 LEVCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRM 122 Query: 122 KSKDEN 127 ++ + Sbjct: 123 EALRDQ 128 >gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) [Aliivibrio salmonicida LFI1238] gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) [Aliivibrio salmonicida LFI1238] Length = 230 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLC-EPYPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIR 121 Query: 120 MQKSKDENQFLD 131 + +D Sbjct: 122 RVSPTSVEELID 133 >gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469] gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia fergusonii ATCC 35469] gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia fergusonii B253] gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227] Length = 229 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 229 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A E P+ +++D G Sbjct: 4 RILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAML-TEPYPDLVLLDWMFPGGNGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + E + G GA+ F+ KPF+ + L ++ + + Sbjct: 63 QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122 >gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 244 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ R G+ V A +A + P+ +V+D M + Sbjct: 9 QRILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAA-YAPDLIVLDIQMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ V L + G AGA+ +L+KPF + L +R L + Sbjct: 68 LTAARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 126 >gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106] gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106] Length = 1361 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD I +V + + V +A+S EA E E +P+ +++D M + Sbjct: 891 KILIVDDDPINLQVLVNYLCLQNYAVTQASSGIEAMEILEAGYIPDLILLDVMMPRMTGY 950 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + + L + ++AG GAN +L KP N++ L ++ ++ Sbjct: 951 EVTRRIRETWPPHQLPIMMLTAKNQVSDLVAGLEVGANDYLSKPLNKDELLARIKTHIRI 1010 Query: 121 QKSKDE 126 ++ + E Sbjct: 1011 KQLRTE 1016 >gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis MR-1] gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis MR-1] Length = 239 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A KE P+ +++D G Sbjct: 14 RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL-KEPYPDLILLDWMFPGGSGI 72 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 73 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 132 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 133 SAPTRLEETID 143 >gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator [Citrobacter rodentium ICC168] gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium] gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator [Citrobacter rodentium ICC168] Length = 229 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638] gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 229 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1566 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R + L D + V + E +E LP+ ++ D M G+ F Sbjct: 397 RILLADDNADMRDYIKRLLTDL-YEVETVSDGIAVLEALARE-LPDLVLTDVMMPGLDGF 454 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P + + L + G +AGA+ +L+KPF+ L + +M Sbjct: 455 ELLRELRANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHLKM 514 Query: 121 QKSKDENQFLD 131 + ++EN + Sbjct: 515 AQIREENAHRE 525 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 6/113 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD R L + G V S EA + P+ L+ D M + Sbjct: 1447 ILVVDDDADTRDFLGFLLREAGAKVVTLASATEALQVL-AGSKPDVLLCDIGMPEIDGYM 1505 Query: 62 FIAHVRQMPLGT-DVFV--YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 I VR + + + L +AG + KP E L Sbjct: 1506 LIKQVRIWENQSGEKPILAIALTAYAGDLNHEKALKAGFQHHISKPIKPEELL 1558 >gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. NATL2A] Length = 242 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF V A E E +K ++P+ ++ D M Sbjct: 16 RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQK-MIPDVIISDVMMPRCDGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G +AG + ++ KPF+ + L ++ + Q Sbjct: 75 GLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134 Query: 121 QK 122 Q+ Sbjct: 135 QE 136 >gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301] gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T] gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401] gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a str. 301] gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a str. 2457T] gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5 str. 8401] gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella flexneri 2002017] gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2a str. 2457T] gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2747-71] gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-671] gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2930-71] gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-304] Length = 229 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 242 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF V A E E +K ++P+ ++ D M Sbjct: 16 RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQK-MIPDVIISDVMMPRCDGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G +AG + ++ KPF+ + L ++ + Q Sbjct: 75 GLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134 Query: 121 QK 122 Q+ Sbjct: 135 QE 136 >gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or CreC) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhi] gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 229 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933] gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. Sakai] gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. MG1655] gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227] gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. W3110] gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89] gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1] gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A] gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS] gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4113] gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4401] gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4501] gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4486] gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4196] gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4076] gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC869] gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC508] gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739] gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. DH10B] gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5] gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia albertii TW07627] gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94] gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 53638] gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B7A] gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli F11] gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E22] gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E110019] gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B171] gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1012] gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 101-1] gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. EC4024] gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4206] gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4045] gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4042] gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4115] gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11] gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str. E2348/69] gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. TW14588] gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1] gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88] gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a] gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989] gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39] gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026] gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972] gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BW2952] gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606] gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. TW14359] gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9] gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B] gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str. 12009] gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str. 11368] gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str. 11128] gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O157:H7 str. FRIK2000] gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str. FRIK966] gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli O55:H7 str. CB9615] gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli FVEC1412] gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B354] gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B185] gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B088] gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302] gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 119-7] gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 198-1] gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 84-1] gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 115-1] gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 182-1] gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 187-1] gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 21-1] gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 116-1] gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 175-1] gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 45-1] gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 200-1] gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 69-1] gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 196-1] gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 185-1] gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 124-1] gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 78-1] gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 146-1] gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101] gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736] gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 145-7] gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 2362-75] gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1827-70] gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H736] gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M605] gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M718] gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA143] gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA271] gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA280] gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H591] gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H299] gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9] gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or CreC) [Escherichia coli O157:H7 str. EDL933] gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli] gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB [Escherichia coli str. K-12 substr. MG1655] gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. MG1655] gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli O157:H7 str. Sakai] gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150] gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227] gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K12 substr. W3110] gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli UTI89] gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC O1] gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli HS] gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E24377A] gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. DH10B] gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia albertii TW07627] gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli SMS-3-5] gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii CDC 3083-94] gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4196] gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4113] gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 53638] gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4076] gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4401] gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4486] gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4501] gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC869] gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC508] gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B7A] gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli F11] gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E22] gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E110019] gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B171] gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1012] gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 101-1] gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4206] gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4045] gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4042] gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4115] gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11] gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli] gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O127:H6 str. E2348/69] gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. TW14588] gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli 55989] gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli IAI1] gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli S88] gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli IAI39] gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli ED1a] gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli UMN026] gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia coli LF82] gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972] gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BW2952] gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli B str. REL606] gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BL21(DE3)] gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O157:H7 str. TW14359] gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str. 11368] gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str. 12009] gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str. 11128] gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli DH1] gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15] gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator [Escherichia coli 042] gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli O55:H7 str. CB9615] gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B088] gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli FVEC1412] gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B185] gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B354] gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli IHE3034] gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302] gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 196-1] gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 185-1] gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 200-1] gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 175-1] gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 198-1] gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 69-1] gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 84-1] gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 45-1] gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 115-1] gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 182-1] gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 116-1] gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 21-1] gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 187-1] gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 119-7] gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 124-1] gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 78-1] gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 146-1] gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101] gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU 83972] gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146] gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 145-7] gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator [Escherichia coli ETEC H10407] gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1827-70] gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 2362-75] gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG 857C] gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli W] gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1] gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 85-1] gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 153-1] gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 3431] gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112] gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83] gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. EC1212] gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327] gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B] gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. G5101] gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. 493-89] gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H 2687] gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA 5905] gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. LSU-61] gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli EPECa14] gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E128010] gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella sonnei 53G] gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli LT-68] gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1180] gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli RN587/1] gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli KO11] gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E1520] gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E482] gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H120] gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H252] gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H489] gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M863] gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA007] gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TW10509] gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 57-2] gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 60-1] gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 117-3] gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E1167] gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044] gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125] gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli STEC_7v] gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Escherichia coli AA86] gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H736] gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M605] gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M718] gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA143] gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA271] gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA280] gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H591] gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H299] gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 155-74] gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii 5216-82] gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii 3594-74] gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9] gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88] Length = 229 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36] gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36] Length = 228 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ GF V EA EA + E PN +++D + G Sbjct: 3 KRILVVEDELAIREMLCFALEQKGFDVVEAGDYNEAVDRLV-EPYPNLILLDWMLPGGSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H++ P + + V L + E + G GA+ ++ KPF+ + L + + + Sbjct: 62 IKYIKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVMR 121 Query: 120 MQKSKDENQFLD 131 ++ +D Sbjct: 122 RVAPMTQDTVID 133 >gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Yersinia enterocolitica subsp. palearctica Y11] Length = 279 Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 53 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 111 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 112 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 171 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 172 RISPMAVEEVIE 183 >gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 240 Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R+ G+ V EA EA E P+ +++D + +E Sbjct: 14 VLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVL-AERKPDLVLLDWMLPSLSGIE 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ P ++ + L + I G GA+ +L KPF+ L +R L + Sbjct: 73 ICRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRA 132 Query: 122 KSKDE 126 + + Sbjct: 133 QPVSQ 137 >gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 232 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + ++ + + G+ A + EA KE P+ +++D + G+ Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + + + + G GA+ ++ KPF+ + ++ + Sbjct: 62 GYEVCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121 Query: 119 QMQ 121 + + Sbjct: 122 RRR 124 >gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 251 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA +E P+ +V+D M Sbjct: 11 KILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQE-QPDLVVLDVMMPKLDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 Query: 121 QK 122 + Sbjct: 127 IE 128 >gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 237 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ +R+V + G+ V+ A + E + + P+ +++D M Sbjct: 3 KRILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVF-HQYQPDLIILDLMMPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++V + L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 62 WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-272] gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-227] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 232 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R++ R+ G+ +F A + EA E KE P +++D + + Sbjct: 5 KILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIA-KEKKPTLILLDVMLPQMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 64 DVCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRR 123 Query: 121 QKSKDENQ 128 K + Sbjct: 124 TLLKSTEE 131 >gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR [Xenorhabdus nematophila ATCC 19061] gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 229 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 KRILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRL-SEPYPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ + V + + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQLIKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVLR 121 Query: 120 MQKSKDENQFLD 131 + + ++ Sbjct: 122 RISPMEAEEVIN 133 >gi|259909297|ref|YP_002649653.1| Response regulator in two-component regulatory system with PhoR [Erwinia pyrifoliae Ep1/96] gi|224964919|emb|CAX56442.1| Response regulator in two-component regulatory system with PhoR [Erwinia pyrifoliae Ep1/96] gi|283479352|emb|CAY75268.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia pyrifoliae DSM 12163] Length = 229 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLI-EPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G AGA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEAGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 229 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 232 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R++ ++ GF V +A + A + + E +P+ +++D + G Sbjct: 1 MPKILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSE-VPDIILLDIMLPGQD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ Q + + L + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLSVCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARL 119 Query: 119 QMQKSKDENQFLD 131 + Q ENQ L+ Sbjct: 120 RRQTV--ENQVLE 130 >gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1114 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + ++ + G+ V A + +A E E P+ +++D M + E Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAENGPQALAMVE-EQRPDLILLDIMMPEMSGYE 765 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ ++ + L + I G GAN +L KPFN+E L ++ Q Sbjct: 766 VCTILRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQAS 825 Query: 122 KSKDENQFLDAI 133 K++ E Q ++ Sbjct: 826 KTEHEKQKNQSL 837 >gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] Length = 345 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD V +V + G+ V A A P+ +V+D + G+ Sbjct: 16 VLVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAH-RPDLVVLDLMLPGMDGLE 74 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V V L D E + G GA+ ++ KPF+ L + + + Sbjct: 75 VCRRLRERAA---VPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRR 130 >gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 4343-70] Length = 229 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] Length = 236 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + GF VF A EA E +KE P+ +++D + Sbjct: 3 KRILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEE-PDLILLDIMLPHKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKS---YDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKSKDEN 127 +KS E Sbjct: 119 RRKSGAEE 126 >gi|218782319|ref|YP_002433637.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218763703|gb|ACL06169.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 301 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L++D S ++ V +++ G V AT+ E E + P+ +++D M G+ Sbjct: 1 MANILVIDDSRLIAHVAKNMLTARGHEVTVATNGEEGLEAVAT-IKPDLILLDLIMPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P D+ V L + + + G AGA+ ++ KPF L + Sbjct: 60 GYAVCEKIKGSPATADIPVIMLTSKAETADKVRGLEAGASDYVTKPFEEGELVARVNTHL 119 Query: 119 QMQK----SKDENQFLDAI 133 ++++ ++ N+ L + Sbjct: 120 RIKELYESLQETNRQLQEL 138 >gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 228 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ +V+++ R G+ V A EA P+ +++D + Sbjct: 4 TILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNN-PDLVILDIMLPKKDGW 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R M ++ + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 TVCREIRAM---SNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRR 119 Query: 121 QKSKDEN 127 +++ Sbjct: 120 TSLANQD 126 >gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cancerogenus ATCC 35316] gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cancerogenus ATCC 35316] Length = 229 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|531494|emb|CAA56927.1| phoB [Shigella flexneri] Length = 229 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510] gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510] Length = 248 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+V+ + + ++ GF V A+ EA E P+ +++D + + LE Sbjct: 23 VLIVEDEADILTLLKYNLEKEGFRVATASDGEEAL-LAAGEQTPHIVLLDWMLPLMSGLE 81 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + G +GA+ ++ KPF+ L MR + + Sbjct: 82 VCRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLRR 140 >gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] Length = 245 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD + ++ N + A S EA + E E P+ +++D + G+ Sbjct: 4 NNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFE-EYSPDLVLLDVMLPGMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++ + L + + + G + GA+ +++KPF+ L + L + Sbjct: 63 YQVCTEIRK---TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLR 119 Query: 120 MQKSKDENQ 128 + Q Sbjct: 120 RSAMTESTQ 128 >gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio angustum S14] gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium angustum S14] Length = 1114 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + ++ + G+ V A S +A + +++ P+ +++D M + E Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQALDIVQQQ-RPDLILLDIMMPEMSGYE 765 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ ++ + L + I G GAN +L KPFN+E L ++ Q Sbjct: 766 VCTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQAS 825 Query: 122 KSKDENQFLDAI 133 K++ E Q ++ Sbjct: 826 KTEHEKQKNQSL 837 >gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system with PhoR [Vibrio fischeri ES114] gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system with PhoR [Vibrio fischeri ES114] Length = 230 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLC-EPYPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIR 121 Query: 120 MQKSKDENQFLD 131 + +D Sbjct: 122 RVSPTSIEELID 133 >gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1207 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + + + + + V +A + +A + ++ LP+ +++D M G+ E Sbjct: 741 ILIVDDEPVNLTLLSNQLSLHNYQVIQANNGQKALDILAQDFLPDLILLDVMMPGMTGYE 800 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+ L + + L + ++ G GAN +L KPF+++ L ++ ++ Sbjct: 801 VTQKVRETWLLHQLPIIMLTAKNRVSDLVMGLEVGANDYLSKPFHKKELLARIKTHINIK 860 Query: 122 KSKDE 126 K + E Sbjct: 861 KLRTE 865 >gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio fischeri MJ11] gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio fischeri MJ11] Length = 230 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLC-EPYPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIR 121 Query: 120 MQKSKDENQFLD 131 + +D Sbjct: 122 RVSPTSIEELID 133 >gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 107-1] gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 107-1] Length = 229 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|254508241|ref|ZP_05120365.1| response regulator receiver domain protein [Vibrio parahaemolyticus 16] gi|219548858|gb|EED25859.1| response regulator receiver domain protein [Vibrio parahaemolyticus 16] Length = 1111 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + +V G+ V A EA E E E P +++D M G+ Sbjct: 707 LLVVDDEPVNLRVLDSFLRLEGYRVQTAKDGLEAFEKLEAEK-PELVLLDIMMPGMSGYQ 765 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + V L + + G AGAN +L KPFN++ L +R Sbjct: 766 VCEKLRQDYDHAQLPVIMLTALNQADDRLRGFEAGANDYLSKPFNKQELAARIRAHLTAS 825 Query: 122 KSKD---ENQFLD 131 K++ ENQ L Sbjct: 826 KAEQRRIENQQLQ 838 >gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 229 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|332881804|ref|ZP_08449452.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680443|gb|EGJ53392.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1341 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+LLVD + + ++ + + V A + EA + + + + +V D M G+ F Sbjct: 1093 SILLVDDNMQLLEMMEKILATK-YRVLTAENGLEALKQLKAHAV-DLIVSDVMMPGMDGF 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + AGA+ +L KPF + L + L + Sbjct: 1151 ALCRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLLRT 1210 Query: 121 QKSKDENQFLD 131 +++ + ++ Sbjct: 1211 YRNRQQAFRME 1221 >gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea DSS12] gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea DSS12] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + + GF A A E P+ +++D G Sbjct: 4 KILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMI-SEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SSPTSLEEPID 133 >gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895] gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 236 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 4/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V + S EA E C K P+ +V D M + Sbjct: 1 MKKILVVDDDKTLLTLLKRYLEHRGYQVEQVCSGTEALEACVKNP-PDLVVSDVLMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R +P G + +L + + E I G GA+ +L KP L + L Sbjct: 60 GLEFCRRLRNIPNGRLMPFIFLSSKAELEDRINGHSMGADDYLTKPVAPRELEAKIEALL 119 Query: 119 QM-QKSKDENQFL 130 + + E L Sbjct: 120 ERSHRIHAEIVRL 132 >gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 331 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ R G++ EA A + +++D M + Sbjct: 104 MAKILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQL-SGGAFDLVILDLMMPFMD 162 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V L + +AG +GA+ +++KPF+ L ++ + Sbjct: 163 GMTCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNR 222 >gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2] gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 KRILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRL-SEPYPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +++ D+ V + + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQLIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 272 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M S+++V+ + + ++ + G+ V A EA + +E P+ +++D + G Sbjct: 42 MKPSVMIVEDEEALLTLLQYNLDKEGYKVITAADGEEA-DLLIRETTPDLILLDWMLPGL 100 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R P +V + + + I G GA+ ++ KPF+ L +R + Sbjct: 101 SGIELCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAV 160 Query: 118 PQMQK 122 + + Sbjct: 161 MRRIR 165 >gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3] gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLC-EPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 VNFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family [Enterobacter cloacae SCF1] gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family [Enterobacter cloacae SCF1] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + + Sbjct: 121 YTKQEQQEEIQ 131 >gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATA-YQPDLVVLDIQMPRMDG 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R GT + L + G AGA+ +L+KPF + L +R L + Sbjct: 70 LTAARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128 >gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB [Citrobacter youngae ATCC 29220] gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB [Citrobacter youngae ATCC 29220] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB [Granulibacter bethesdensis CGDNIH1] gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB [Granulibacter bethesdensis CGDNIH1] Length = 249 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + + R+ GF V EA+ EA E+ P+ +++D + G + Sbjct: 23 TVLIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRL-SEVQPDLVLLDWMLPGLSGI 81 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ P D+ + + V+ + + GA+ ++ KPFN + L+ +R L + Sbjct: 82 EVCRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRR 141 >gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073] gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB [Escherichia coli CFT073] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 237 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 9/137 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ +R+V + + V+ A + E + P+ +++D M Sbjct: 3 KRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTH-QPDLIILDLMMPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++V + L + + I G GA+ +L KPF+ L ++ + + Sbjct: 62 WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 118 Query: 120 M---QKSKDENQFLDAI 133 + + + L+ I Sbjct: 119 RGSHVQIQAKESLLEVI 135 >gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A KE P+ +++D G Sbjct: 4 RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL-KEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SAPTRLEETID 133 >gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 236 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ +R+V + + V+ A + E + P+ +++D M Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTH-QPDLIILDLMMPKKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ ++V + L + + I G GA+ +L KPF+ L ++ + Sbjct: 60 GWELCGEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa] gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa] Length = 239 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD +R++ + G+ V A EA + E PN +V+D M Sbjct: 6 KKILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEH-PNLVVLDVMMPKLDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ +D+ + L D I G GA+ +++KPF+ + L +R L + Sbjct: 65 YGVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLR 121 Query: 120 MQKS 123 ++ Sbjct: 122 RTEN 125 >gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A KE P+ +++D G Sbjct: 4 RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL-KEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SAPTRLEETID 133 >gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01] gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222] gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32] gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01] gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222] gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLC-EPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|298492569|ref|YP_003722746.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234487|gb|ADI65623.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 383 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + + + + G+ V A S A E E P+ +++D +M + Sbjct: 12 NILIVDDTPNNLHLLSSMLEEQGYEVRCANSGAIALRAVEMEH-PDIILLDINMPNMNGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ V +L + + R G ++ KPF E + + + Sbjct: 71 EVCERLKLDPRTRDIPVIFLSALSETIDKVKAFRIGGIDYITKPFQLEEVLARLENHISL 130 Query: 121 QKSKDENQF 129 ++ + E Q Sbjct: 131 RRMQIELQQ 139 >gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155] gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195] gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS223] gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS223] gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS678] Length = 229 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A KE P+ +++D G Sbjct: 4 RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL-KEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SAPTRLEETID 133 >gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB [Loktanella vestfoldensis SKA53] gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB [Loktanella vestfoldensis SKA53] Length = 229 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+V+ R+V + GF V +A EA +E P+ +++D + G + Sbjct: 7 SVLVVEDEPAQREVLAYNLESEGFRVIKAADGNEAL-LLIEEEQPDLILLDWMLPGTSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P V L + + G GA+ ++ KP++ L ++ + Sbjct: 66 EICRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRR 125 Query: 121 QKSKDENQFL 130 + + L Sbjct: 126 SRPATMGERL 135 >gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150] gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150] Length = 236 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ +++D + + Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEN-PDLVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 240 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V +V + G++V A EA P+ +V+D + G+ Sbjct: 12 RVLVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAH-RPDLVVLDLMLPGMDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V L D + I G GA+ ++ KPF+ L + + + + Sbjct: 71 EVCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSR 129 Query: 123 SKDENQFLDA 132 +++ L A Sbjct: 130 PAEQSGALRA 139 >gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 229 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + K + G+ V A EA +E P+ +V+D + Sbjct: 1 MPRVLVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEES-PDLIVLDLMLPKLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++R+ +DV + L + I G GA+ ++ KPFN L ++ + Sbjct: 60 GFEVCRNIRK---TSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIM 116 Query: 119 QMQKSKD 125 + +S Sbjct: 117 RRSQSSS 123 >gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 231 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 4/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + ++ + G+ V EA A E +KE LP+ +++D + G+ Sbjct: 1 MK-ILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKE-LPDLVILDIMLPGMS 58 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++R ++ + L + I G GA+ +++KPF+ L ++ Sbjct: 59 GLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARL 118 Query: 119 QMQKSKD 125 + + ++ Sbjct: 119 RRLEGRE 125 >gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia enterocolitica W22703] Length = 279 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 53 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 111 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 112 IQFIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 171 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 172 RISPMAVEEVIE 183 >gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124] gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124] Length = 235 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ +++D + + Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEK-PDLVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|153871532|ref|ZP_02000680.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] gi|152071998|gb|EDN69316.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] Length = 594 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + K+ F V A + A K L P+ +++D M G+ Sbjct: 6 NKVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQV-KNLKPDIILLDIMMPGMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ D+ V ++ + G + GA ++ KP E + + Sbjct: 65 FETCRCLKANEESKDIPVIFMTALESTPDKVKGFKIGAIDYITKPVQMEEVLARVNTHLT 124 Query: 120 MQKSKDENQFLD 131 ++ +N+ L+ Sbjct: 125 IRHL--QNRLLE 134 >gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family [Tolumonas auensis DSM 9187] gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family [Tolumonas auensis DSM 9187] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + G+ EA EA KE P +++D + G Sbjct: 4 RVLVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALV-KEPYPELILLDWMIPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 FI ++Q L ++ + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QFIKLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVMRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SAPTATEEVID 133 >gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126] gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126] Length = 235 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ +++D + + Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEK-PDLVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 242 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E ++ P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETF-RQTNPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QK 122 + Sbjct: 123 VE 124 >gi|239995182|ref|ZP_04715706.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii ATCC 27126] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R++ + + GF + EA A+E E P+ +++D + G Sbjct: 3 RTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDFDIAQEKIC-EPYPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++Q D+ V L + E I G AGA+ ++ KPF+ + L ++ + + Sbjct: 62 VQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] Length = 232 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + ++ R G V A A C +E LP+ +++D + Sbjct: 1 MAKILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAAL-ACLQEELPDLIILDLMLPRLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE VR + + L + + + G GA+ ++ KPF+ L ++ L Sbjct: 60 GLELCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF+ A A + E P+ +++D G Sbjct: 4 RILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLL-TEPYPDLVLLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVIRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SSPTSLEEPID 133 >gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio vulnificus CMCP6] gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016] gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio vulnificus MO6-24/O] gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio vulnificus CMCP6] gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016] gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio vulnificus MO6-24/O] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|310766801|gb|ADP11751.1| Response regulator in two-component regulatory system with PhoR [Erwinia sp. Ejp617] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLI-EPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPLAVEEVIE 133 >gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 228 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + A++ EA + +++ + +++D M + Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRD-AFHLVLLDVMMPEMDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A +R ++V + L D I G + GA+ ++ KPF+ L + + Sbjct: 66 TACMRIRE-FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSH 124 >gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio furnissii CIP 102972] gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio furnissii CIP 102972] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum SCRI1043] gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium wasabiae WPP163] gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum SCRI1043] gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium wasabiae WPP163] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P +++D + G Sbjct: 3 KRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQL-SEPFPELVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|205351709|ref|YP_002225510.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271490|emb|CAR36308.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626742|gb|EGE33085.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNKL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241] gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241] Length = 223 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + + Sbjct: 121 YTKQEQQEEIQ 131 >gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 228 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 3/125 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + ++ + GF +F A S +A E K P+ +++D + G+ Sbjct: 4 TSILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAV-KNFSPDLVLLDLMLPGIDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ P + + + L + D ++ G GA+ ++ KPF+ + +R + + Sbjct: 63 LEVARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAVMR 122 Query: 120 MQKSK 124 ++ Sbjct: 123 RNAAE 127 >gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 235 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A+ E E E P+ +V+D + G+ Sbjct: 1 MTKILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEK-PDLIVLDLMLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + DV + L + + I G GA+ +L KPF+ + ++ + + Sbjct: 60 GIEVTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRR 119 Query: 121 QKSKDE 126 +S+ E Sbjct: 120 TESRKE 125 >gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB [Shewanella denitrificans OS217] gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + GF A A +E P+ +++D G Sbjct: 4 RILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLL-QEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SAPTRLEETID 133 >gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046] gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 238 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + + + GF V A E E P+ +++D + Sbjct: 1 MKKILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAF-HEKNPDLVILDLMLPKID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + V + + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCREIRK---TSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANL 116 Query: 119 QMQKS 123 + Q+ Sbjct: 117 RRQQL 121 >gi|332140178|ref|YP_004425916.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii str. 'Deep ecotype'] gi|327550200|gb|AEA96918.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii str. 'Deep ecotype'] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R++ + + GF + EA A+E E P+ +++D + G Sbjct: 3 RTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKIC-EPYPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++Q D+ V L + E I G AGA+ ++ KPF+ + L ++ + + Sbjct: 62 VQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546] gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKL-SEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio coralliilyticus ATCC BAA-450] gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio coralliilyticus ATCC BAA-450] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 233 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M S +L+V+ + + R+ G+ V EA EA E P+ +++D + Sbjct: 1 MKSHVLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLV-AEDQPDVVILDWMLPSL 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R+ P D+ + L + I G GA+ ++ KPF+ L ++ L Sbjct: 60 SGIEVCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKAL 119 Query: 118 PQMQK 122 + + Sbjct: 120 LRRAQ 124 >gi|292487424|ref|YP_003530296.1| phosphate regulon transcriptional regulatory protein phoB [Erwinia amylovora CFBP1430] gi|292898668|ref|YP_003538037.1| phosphate regulon two-component response regulator [Erwinia amylovora ATCC 49946] gi|291198516|emb|CBJ45624.1| phosphate regulon two-component response regulator [Erwinia amylovora ATCC 49946] gi|291552843|emb|CBA19888.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia amylovora CFBP1430] gi|312171528|emb|CBX79786.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia amylovora ATCC BAA-2158] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDSALSLLI-EPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RIAPMAVEEVIE 133 >gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella pneumoniae 342] gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044] gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. 1_1_55] gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. MS 92-3] gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae] gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella pneumoniae 342] gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. 1_1_55] gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. MS 92-3] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI +++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + Sbjct: 121 YTKQEQQEEFQ 131 >gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1] gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1] Length = 223 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + Sbjct: 121 YTKQEQQEEFQ 131 >gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia aldovae ATCC 35236] gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia aldovae ATCC 35236] Length = 260 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 34 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVMRL-SEPFPDLVLLDWMLPGGSG 92 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 93 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 152 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 153 RISPMAVEEVIE 164 >gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 247 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E ++ P+ +V+D M Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETF-RQTSPDLVVLDVMMPKLDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 Query: 121 QK 122 + Sbjct: 127 VE 128 >gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ + + GF A A E KE P+ +++D G Sbjct: 4 RILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELL-KEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 123 SAPTRLEETID 133 >gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 244 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD + ++ N + A S EA + E E P+ +++D + G+ Sbjct: 4 NNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFE-EYSPDLVLLDVMLPGMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++ + L + + + G + GA+ +++KPF+ L + L + Sbjct: 63 YQVCTEIRK---TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLR 119 Query: 120 MQKSKDENQ 128 + Q Sbjct: 120 RSAMTESAQ 128 >gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 223 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D + +V + GF V A + + K +P+ +++D + Sbjct: 1 MK-ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMF-KNEMPDLVILDIMLPKKD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ +++ + L + + + G GA+ +++KPF+ + L ++ + Sbjct: 59 GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115 Query: 119 QMQKSK 124 + + + Sbjct: 116 RRTQGE 121 >gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + R G++V A++ EA E P+ +++D M + Sbjct: 4 THILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELI-SSRQPDLVILDVMMPHLDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ + V + L + + + + G GA+ +++KPF+ L +R + + Sbjct: 63 FSTCERIRQ---FSSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAVLR 119 Query: 120 MQKSKD 125 ++ + Sbjct: 120 RAQTAE 125 >gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + + Sbjct: 121 YTKQEQQEEIQ 131 >gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 229 Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio orientalis CIP 102891] gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio orientalis CIP 102891] Length = 229 Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 223 Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D + +V + GF V A + + K +P+ +++D + Sbjct: 1 MK-ILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMF-KNEMPDLVILDIMLPKKD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ +++ + L + + + G GA+ +++KPF+ + L ++ + Sbjct: 59 GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115 Query: 119 QMQKSK 124 + + + Sbjct: 116 RRTQGE 121 >gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01] gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B] gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01] gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B] Length = 229 Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] Length = 231 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D M G Sbjct: 5 KSVLIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIV-DDKPDMVLLDWMMPGASG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +EF +R+ D+ + L + D + I G AG + ++ KPF+ L ++ + + Sbjct: 64 IEFARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLR 123 Query: 120 M 120 Sbjct: 124 R 124 >gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus thermophilus ND03] Length = 235 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E + P+ +++D + + Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKK-PDLVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|332994441|gb|AEF04496.1| putative DNA-binding response regulator PhoB [Alteromonas sp. SN2] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R++ + + GF + EA A+E E P+ +++D + G Sbjct: 3 RTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKIC-EPYPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++Q D+ V L + E I G AGA+ ++ KPF+ + L ++ + + Sbjct: 62 VQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELIARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA206] gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 16-3] gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA206] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ +++KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + ++ + + G+ A + EA KE P+ +++D + G+ Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + + + + G GA+ ++ KPF+ + ++ + Sbjct: 62 GYEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121 Query: 119 QMQ 121 + + Sbjct: 122 RRR 124 >gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 232 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + ++ + + G+ A + EA KE P+ +++D + G+ Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + + + + G GA+ ++ KPF+ + ++ + Sbjct: 62 GYEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121 Query: 119 QMQ 121 + + Sbjct: 122 RRR 124 >gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 296 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 63 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 121 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 122 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 178 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 179 RRNQATAQ 186 >gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 245 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E +E P+ +V+D M Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREH-PDLVVLDVMMPKLDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 GVCQELRKD---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter turnerae T7901] gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB [Teredinibacter turnerae T7901] Length = 235 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + R + V EA EA + + P+ +++D M G Sbjct: 4 KKILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVV-DTRPDLILLDWMMPGVSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +EF ++ + ++ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IEFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLR 122 Query: 120 MQKSKD 125 S Sbjct: 123 RSDSLS 128 >gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 237 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ +R+V + + V+ A + E + P+ +++D M Sbjct: 3 KRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTH-QPDLIILDLMMPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++V + L + + I G GA+ +L KPF+ L ++ + + Sbjct: 62 WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ LV+D M + Sbjct: 13 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKA-ASYRPDLLVLDIQMPRMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + L + G AGA+ +L+KPF + L +R L + Sbjct: 72 LTAARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130 >gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus] Length = 235 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E + P+ +++D + + Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKK-PDLVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GL-EIVKEIRKTSHTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + + G+ VF A EA E +E+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKV-REVEPDLILLDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-REVRKTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family [Halothiobacillus neapolitanus c2] Length = 230 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+V+ +R++ G+ + EA+ V EA E LP+ +++D + G Sbjct: 4 KTILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQL-SHKLPDLVLLDWMLPGASG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +EF +++ + DV + L + E ++G AGA+ ++ KPF+ L ++ + + Sbjct: 63 IEFARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLR 122 Query: 120 MQKSKDE 126 E Sbjct: 123 RASPDSE 129 >gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT] gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + G+ A + E P+ +++D + + Sbjct: 7 KILIVDDDENICEIIKMYLESSGYSTECCYDGKSA-QTAFYEYKPDLVLLDVMLPHMDGI 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRKE---CETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122 Query: 121 QKSKDENQ 128 ++E++ Sbjct: 123 YNVENEDK 130 >gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB [Grimontia hollisae CIP 101886] gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB [Grimontia hollisae CIP 101886] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E E P +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSALEKIC-EPYPELILMDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ L + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 223 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D + +V + GF V A + + K +P+ +++D + Sbjct: 1 MK-ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMF-KNEMPDLVILDIMLPKKD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ +++ + L + + + G GA+ +++KPF+ + L ++ + Sbjct: 59 GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115 Query: 119 QMQKSK 124 + + + Sbjct: 116 RRTQGE 121 >gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 1139 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL D + +R L + V A + K P+ ++ D M Sbjct: 645 RILLADDNADMRDYVMRLLKGS-YRVEAVADGEAALKAALKHP-PDLILSDIMMPRLDGF 702 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR P + V L E + G GA+ +L KPF+ L +R +M Sbjct: 703 GLLREVRNNPSTRLIPVILLSARAGEESRVEGLGHGADDYLTKPFSAHELLARVRSHLRM 762 Query: 121 QKSKDE 126 + + E Sbjct: 763 ARLRQE 768 >gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] Length = 234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ ++ G+ VF A EA E E E+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVE-EVEPDLIILDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] Length = 235 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + G+ V EA EA E E +++D M + Sbjct: 15 KILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEKDIALIILDVMMPKMDGW 74 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ V + L D + G G + ++ KPF+ + L + L + Sbjct: 75 QTCREIRQSSK---VPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALLRR 131 Query: 121 QKSKDENQFLDA 132 D ++ ++A Sbjct: 132 SNVLDADEHVEA 143 >gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas tunicata D2] gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas tunicata D2] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIASLM-EPYPDMILLDWMLPGGSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++Q + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQIAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIKAVIR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RVSPTSLEEAIE 133 >gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51] gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 7/132 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ R G+ + EA + A E K+ + +++D M G+ Sbjct: 1 MK-ILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDS-FDLVILDLMMPGLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L + + + G GA+ +++KPF+ L ++ + Sbjct: 59 GWTVCKVLRKETK---IPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVL 115 Query: 119 QMQKSKDENQFL 130 + + + + L Sbjct: 116 RRLEGEPTKEHL 127 >gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125] gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125] Length = 236 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + GF V A EA E +E P+ +++D + Sbjct: 4 KKILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEK-PDLILLDIMLPNKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 MEVCREVRKQFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQKSKDENQF 129 ++ ++Q Sbjct: 120 RHQTSGDDQL 129 >gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 231 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD +R++ R GF V A EA + K P +++D + + Sbjct: 6 ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKA-KSTTPQLIILDLMLPKLDGWD 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+ ++V + L + + + G GA+ +L KPF+ L ++ + + Sbjct: 65 VCREVRK---FSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRA 121 Query: 122 KSKDE 126 +++ Sbjct: 122 TPEEQ 126 >gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] Length = 233 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + GF EA + +A E P+ +++D + G Sbjct: 3 RKILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKI-HEPYPDLILLDWMLPGGTG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++Q ++ + L D + + G AG + F+ KPF+ + L ++ + + Sbjct: 62 VSLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium profundum SS9] gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium profundum SS9] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA +A E E P +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKIC-EPYPELILMDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ L + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp. SKA34] gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp. SKA34] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E E P +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMC-EPYPELILMDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ L + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium damselae subsp. damselae CIP 102761] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E E P +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDSALEKIC-EPYPELILMDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ L + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 237 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ +R+V + + V+ A + E + P+ +++D M Sbjct: 3 KRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTH-QPDLIILDLMMPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++V + L + + I G GA+ +L KPF+ L ++ + + Sbjct: 62 WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) [Streptococcus thermophilus CNRZ1066] Length = 235 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E + P+ +++D + + Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKK-PDLVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GL-EIVKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 327 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V +V G V A A P+ +V+D + G+ Sbjct: 19 VLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTH-RPDLVVLDLMLPGMDGLE 77 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V L D + I G GA+ ++ KPF+ L + + + + Sbjct: 78 VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTR 135 >gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 231 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + + R+ G+ V A+ + E +E P+ +V+D + + Sbjct: 1 MPTILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREP-PDLIVLDIMLPRLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ +DV + L D IAG GA+ ++ KPF+ +R + Sbjct: 60 GFSVCRILRQE---SDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIM 116 Query: 119 QMQKSK---DENQFLDA 132 + + + E + L+A Sbjct: 117 RRSERQPRTSEREVLNA 133 >gi|300715551|ref|YP_003740354.1| Response regulator in two-component regulatory system with PhoR [Erwinia billingiae Eb661] gi|299061387|emb|CAX58497.1| Response regulator in two-component regulatory system with PhoR [Erwinia billingiae Eb661] Length = 229 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVNLLI-EPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 244 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ + + G+ V A A + E P+ +V+D + G+ Sbjct: 3 RKILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSE-RPDLIVLDIMLPGMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + L D + G GA+ ++ KPF R L +R L + Sbjct: 62 LEVCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 232 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + ++ + + G+ A + EA KE P+ +++D + G+ Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + + + + G GA+ ++ KPF+ + ++ + Sbjct: 62 GYEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVL 121 Query: 119 QMQ 121 + + Sbjct: 122 RRR 124 >gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 243 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E + +P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFY-DSVPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QK 122 + Sbjct: 123 VE 124 >gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio harveyi HY01] gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116] gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3] gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio harveyi HY01] gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116] gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3] Length = 229 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] Length = 299 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ R G++ EA A + +++D M + Sbjct: 72 MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLL-SGGGFDLVILDVMMPFMD 130 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V L + +AG GA+ +++KPF+ L ++ + Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 121 QKSKDE 126 + E Sbjct: 191 TMPRSE 196 >gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103] gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103] Length = 267 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A+ +A + + L++D M Sbjct: 36 MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL--DNSIDLLLLDVMMPKKN 93 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 94 GIDTLKELRQQ---YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 150 Query: 119 QMQKSKDENQF 129 + ++ Q Sbjct: 151 RRSNWSEQQQQ 161 >gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] Length = 248 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 9/138 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L+++ +R+V + G+ V+ A + E + P+ +++D M Sbjct: 9 MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTH-QPDLILLDLMMPKK 67 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +RQ ++V + L + + I G GA+ ++ KPF+ L ++ + Sbjct: 68 DGWELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQII 124 Query: 118 PQMQKS--KDENQFLDAI 133 + E +FL + Sbjct: 125 LKRGNQIPIQEEEFLSEV 142 >gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) [Streptococcus thermophilus LMG 18311] Length = 235 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E + P+ +++D + + Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKK-PDLVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18] gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 234 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + ++ GF V A + EA E E P+ +V+D M G+ F Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAEN-PDLIVLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R GT V +L + E + G AG + ++ KPF+ + + +R + + + Sbjct: 65 EVTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124 Query: 123 SKDEN 127 S E Sbjct: 125 SVQEE 129 >gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 230 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++LLV+ ++++ + G V A A K LP+ +++D + G+ + Sbjct: 4 NILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHAL-KFLKTTLPDVILLDWMLPGMSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V + L + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 DLCRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + + ++ Sbjct: 123 RAPQMTEEAVE 133 >gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 227 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + +R++ R + G+ V A++ E + P+ +++D M G+ Sbjct: 1 MKTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGL-LETRHHPPDLILLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V +L + G GA+ +L KPF+ L +R L + Sbjct: 60 GL-EFLRKYRADAGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRR 118 >gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD 2210633] gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ3810] gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus K5030] gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AN-5034] gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus Peru-466] gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ4037] gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD 2210633] gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ3810] gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus Peru-466] gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AN-5034] gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ4037] gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus K5030] gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329] Length = 229 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 236 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + E ++ P+ +++D + Sbjct: 5 KKILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVE-DIQPDLILLDIMLPQKDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 64 MEVCREIRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 120 Query: 120 MQKSKDEN 127 + + E Sbjct: 121 RHQQRQEQ 128 >gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 237 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 9/137 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ +R+V + + V+ A + E + P+ +++D M Sbjct: 3 KRILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTH-RPDLIILDLMMPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++V + L + + I G GA+ +L KPF+ L ++ + + Sbjct: 62 WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 118 Query: 120 MQK---SKDENQFLDAI 133 + E L+ I Sbjct: 119 RGSHVPIQAEESLLEVI 135 >gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 243 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E +E +P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETF-REEVPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QK 122 + Sbjct: 123 VE 124 >gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium profundum 3TCK] gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium profundum 3TCK] Length = 229 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA +A E E P +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKIC-EPYPELILMDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ L + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 229 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L] gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W] gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L] gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W] gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + + Sbjct: 121 YTKQEQQEEIQ 131 >gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + + Sbjct: 121 YTKQEQQEEIQ 131 >gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 227 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + VR + R + G+ V A++ E + P+ +++D M G+ Sbjct: 1 MKTILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGL-LEVRHHRPDLVLLDMMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V +L + G GA+ ++ KPF+ L +R + Sbjct: 60 GL-EFLRRFRAAEHAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRR 118 >gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 247 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A+ EA +E P+ +V+D M Sbjct: 10 TILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRET-PDLIVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L + L + Sbjct: 69 GVCLELRKQ---SDVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRR 125 Query: 121 Q 121 + Sbjct: 126 R 126 >gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] Length = 233 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R G+ A S EA ++E +P+ +V+D + G+ F Sbjct: 5 KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKRE-MPDLVVLDLMLPGIDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + ++ + L + + ++ G GAN ++ KPF+ L +R + + Sbjct: 64 EVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRR 123 Query: 121 Q 121 + Sbjct: 124 R 124 >gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus 16] gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326] gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus 16] gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4] gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 223 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D + +V + GF V A + + K +P+ +++D + Sbjct: 1 MK-ILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMF-KHEMPDLVILDIMLPKKD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ +++ + L + + + G GA+ +++KPF+ + L ++ + Sbjct: 59 GYEVCREIRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115 Query: 119 QMQKSK 124 + + + Sbjct: 116 RRTQGE 121 >gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 239 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 6/129 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + ++ + + GF V A S +A + PN +++D M + Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E + +R+ D+ + +L + + G GA+ ++ KPF+ E L +R Sbjct: 61 SGYELCSQIRRE---WDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAH 117 Query: 118 PQMQKSKDE 126 + + + Sbjct: 118 LRRYERIRK 126 >gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +L GF V A EA E++ + +++D + G+ Sbjct: 1 MSRILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSA-DLILLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VRQ ++V V L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQVRQR---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116 Query: 119 QMQKSKDE 126 + Q ++E Sbjct: 117 RRQGEQEE 124 >gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A C E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSAL-ACLSEPYPDLVLLDWMLPGGSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +++ D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQIIKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. ND132] gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans ND132] Length = 228 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ R++ ++ GF V A P+ +++D M G Sbjct: 4 QKILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHA-FKPDIILLDLMMPGTDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++ P + V L + + I G GA+ +++KPF+ L ++ + + Sbjct: 63 LEVCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAILR 122 Query: 120 MQKSKDEN 127 + + N Sbjct: 123 RYGAPEPN 130 >gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1] gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1] gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 235 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA + + E+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVD-EVHPDLILLDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-RQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 Query: 121 QKS 123 Q + Sbjct: 119 QGA 121 >gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRL-AEPYPELVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] Length = 251 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ V +A EA + +E + + ++D + G+ Sbjct: 16 KKILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDV-DMFIVDIMLPGMDG 74 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R M + V +L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 75 FELVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 134 Query: 120 M 120 Sbjct: 135 R 135 >gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + + Sbjct: 121 YTKQEQQEEIQ 131 >gi|213498008|emb|CAR92187.1| PhoB protein [Serratia sp. ATCC 39006] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAINQL-TEPYPELVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHMKRETLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 ++ ++ Sbjct: 122 RISPMAVDEVIE 133 >gi|330998526|ref|ZP_08322347.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329568257|gb|EGG50073.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1341 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+LLVD + + ++ + + V A + EA E + + + +V D M G+ F Sbjct: 1093 SILLVDDNTQLLEMMEKILATK-YRVLTAENGLEALEQLKASAV-DLIVSDVMMPGMDGF 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + AGA+ +L KPF + L + L Sbjct: 1151 ALCRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLLHT 1210 Query: 121 QKSKDENQFLD 131 +++ + ++ Sbjct: 1211 YRNRQQAFRME 1221 >gi|188534673|ref|YP_001908470.1| Response regulator in two-component regulatory system with PhoR [Erwinia tasmaniensis Et1/99] gi|188029715|emb|CAO97594.1| Response regulator in two-component regulatory system with PhoR [Erwinia tasmaniensis Et1/99] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQNDYHPIEAADYDSAVSLLI-EPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264] gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + + Sbjct: 121 YTKQEQQEEIQ 131 >gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] Length = 271 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + R GF EA A + + +++D M + Sbjct: 45 MAKILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGG-IDLVILDIMMPFMD 103 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V L + +AG GA+ +++KPF+ L ++ + Sbjct: 104 GMTCLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLAR 163 Query: 121 QKSKDEN 127 + E+ Sbjct: 164 TMPRTED 170 >gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae] Length = 229 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ + ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 243 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E ++ P+ +V+D M Sbjct: 7 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIF-RQTEPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 229 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 249 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V +V + G++V A A P+ +V+D + G+ Sbjct: 22 RVLVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHW-PDLVVLDLMLPGMDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V L D + I G GA+ ++ KPF+ L + + + + Sbjct: 81 EVCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRTR 139 >gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8] gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8] gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62] gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF] Length = 234 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ ++ G+ VF A EA E E E+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVE-EVEPDLIILDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|293392590|ref|ZP_06636910.1| phosphate regulon response regulator [Serratia odorifera DSM 4582] gi|291424992|gb|EFE98201.1| phosphate regulon response regulator [Serratia odorifera DSM 4582] Length = 229 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 236 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ A EA E E+E P+ +++D + G+ Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEEN-PDLIILDLMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TENIE 123 >gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 230 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ F GF V AT+ E E ++ P +++D + G+ Sbjct: 5 RILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQK-PALVLLDLMLPGMSGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++MP DV V L + I G GA+ +++KPF+ L +R + + Sbjct: 64 DVCRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAVLKR 123 Query: 121 QKSKDEN 127 + EN Sbjct: 124 AQGVAEN 130 >gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex V453] gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex V453] Length = 1031 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD + +V R L + + A++ +A E + ++ D M G+ Sbjct: 698 TVLLVDDDPVNLQVLRSLLFAENYNLLTASNGVQALEHIRSGQGIDLVITDWMMPGMSGL 757 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ ++ + L E + G +AGAN FL KP + + LR +R L ++ Sbjct: 758 QLCRTVREQHTLFELPILMLTARSLPEDVRTGLQAGANDFLRKPVDADELRARVRNLLEL 817 Query: 121 QKSKDE 126 ++S + Sbjct: 818 RRSVRQ 823 >gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] Length = 228 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L++D +R+V R F V EA EA P+ +++D + G Sbjct: 1 MTTILVIDDEPDIREVMRFALESSDFRVMEAGHADEA-RKLLSNETPDLILLDWMLPGRS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++Q P + + + + E + G GA+ ++ KPF+ + ++ + Sbjct: 60 GLELAQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVL 119 Query: 119 QMQK 122 + K Sbjct: 120 RRAK 123 >gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] Length = 234 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+V+ + + ++ GF V A+ EA E P+ +++D + + LE Sbjct: 9 ILIVEDEADLVTLLKYNLEKEGFRVISASDGEEAL-LLANEQAPHLVLLDWMLPLMSGLE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ P D V L + + G +GA+ ++ KPF+ L MR + + Sbjct: 68 VCRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRR 126 >gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1] gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1] Length = 235 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA + + E+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVD-EVHPDLILLDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-RQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 Query: 121 Q 121 Q Sbjct: 119 Q 119 >gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V A +A + C KE + +V+D M Sbjct: 1 MSRILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKED-FDLIVMDIMMPDTD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +++ D+ V L + G G + ++ KPF+ L ++ + Sbjct: 60 GFTAC-KKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINR 118 Query: 121 QK 122 K Sbjct: 119 SK 120 >gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 247 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA + + P+ +V+D M Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTF-RNTDPDLVVLDVMMPKLDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 246 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 13 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAA-YRPDLVVLDIQMPRMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + L + G AGA+ +L+KPF + L +R L + Sbjct: 72 LTAARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130 >gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis Antiqua] gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Nepal516] gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. IP275] gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis FV-1] gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92] gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Pestoides A] gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. India 195] gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Nepal516] gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or CreC), regulates Pi uptake (OmpR family) [Yersinia pseudotuberculosis IP 32953] gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CO92] gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pseudotuberculosis IP 31758] gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. IP275] gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Nepal516] gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. India 195] gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Pestoides A] gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 257 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +LLP+ +V+D + V Sbjct: 1 MPRILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKG-QALALQLLPDLIVLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSL-SEPYPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ H + GF + EA + EA + E + + +++D M + Sbjct: 1 MARILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLET-VKVDLVIMDIMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R DV + L + + ++ + G GA+ +L+KPF+ L ++ L Sbjct: 60 GWELCRELR---DYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALL 116 Query: 119 QMQK 122 + + Sbjct: 117 KRYR 120 >gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri VA-6] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLLGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65] gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65] Length = 232 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ G+ EA++ +A E P +++D + G Sbjct: 6 KKILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEH-PEMILLDWMLPGTSG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LEF +++ +V + L + + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 LEFARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLR 124 Query: 120 M 120 Sbjct: 125 R 125 >gi|145600097|ref|YP_001164173.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|145211793|gb|ABP41200.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Pestoides F] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ R G+ A +A + P+ +V+D M + Sbjct: 8 QRILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKA-ASYAPDLIVLDIQMPRMDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ + L + G AGA+ +L+KPF + L +R L + Sbjct: 67 LTAARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 125 >gi|90579403|ref|ZP_01235213.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14] gi|90440236|gb|EAS65417.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E E P +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMC-EPYPELILMDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ L + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1431 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 8/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD + +R+ + L + ++V AT A E + LP+ ++ D M Sbjct: 608 RILLVDDNADMREYVKRLLSRH-YVVETATDGLAALEAL-ADHLPDLVLTDVMMPRLDGF 665 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++ +R ++ + L E + G AGA+ +L+KPF+ L + + Sbjct: 666 GLLSALRSNNRTREIPIILLSARAGEEAKVEGLEAGADDYLIKPFSARELLARVEATLKL 725 Query: 120 ---MQKSKDENQFL 130 + + ++ Q L Sbjct: 726 AQLRRDAMEQQQTL 739 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 5/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD R+ L G V A S EA + + P+ L+ D M + Sbjct: 1310 VLVVDDDTDTREFVAFLLEQAGARVITAVSALEALQVFTQSP-PDILLSDIGMPDMDGYM 1368 Query: 62 FIAHVRQMPLGT--DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R +P + L + G + KP + + L A+ L Sbjct: 1369 LMRQIRALPPDQGGKIPAIALTAYAGEIDEKRALKVGFQRHISKPVDPDNLIRAIVNLID 1428 Query: 120 MQ 121 ++ Sbjct: 1429 IK 1430 >gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+ D +R++ F GF V EA EA + P+ +++D M Sbjct: 5 QTVLIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGK-PDIILLDIMMPVLDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR++ +D+ + L + + I G GA+ ++ KPFN + ++ + + Sbjct: 64 LEVCKQVRKI---SDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVLR 120 Query: 120 MQKS 123 + Sbjct: 121 RTNA 124 >gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 234 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V+ A EA E E+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKV-AEIEPDLILLDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-REVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta] gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta] Length = 254 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +RK+ + G+ V A+ EA +E +P+ +++D M Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQE-MPDVVILDIMMPKLDGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 75 GVCQEIRKD---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131 Query: 121 QKSKD 125 Sbjct: 132 TNKAA 136 >gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] Length = 1117 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 3/132 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 LL+VD + +V + G+ V A S +A + E++ P +++D M + E Sbjct: 711 LLVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQ-QPALILLDIMMPEMSGYE 769 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ ++ + L + I G +GAN +L KPFN+E L + Q Sbjct: 770 VCHILREEHSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHLQAG 829 Query: 122 KSKDENQFLDAI 133 K++ + Q A+ Sbjct: 830 KTEVQRQKNAAL 841 >gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 243 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA + E +P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIF-HEAVPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QK 122 + Sbjct: 123 VE 124 >gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia ruckeri ATCC 29473] gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia ruckeri ATCC 29473] Length = 234 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 8 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 66 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 67 IQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 126 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 127 RISPMAVEEVIE 138 >gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 228 Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +V+ + R GF V A EA P+ +++D + + Sbjct: 4 NTILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFAN-PDLVILDIMLPKMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 WAVCREIRK---TMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLR 119 Query: 120 MQK 122 + Sbjct: 120 RAR 122 >gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 232 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R G+ V A E E +L P+ +++D M + Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKF-NQLKPDMVLLDVMMPRMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 64 EVCRRIRKLG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120 >gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family [Dickeya zeae Ech1591] gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Dickeya dadantii 3937] gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family [Dickeya zeae Ech1591] gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Dickeya dadantii 3937] Length = 229 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRL-AEPYPELVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 283 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ V +V GF V EA E +P+ +V+D + G+ Sbjct: 31 RRILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAV-RVATERMPDLVVLDRMLPGLDG 89 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V V L E + G AGA+ +L KPF+ L +R + + Sbjct: 90 LEVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLR 149 Query: 120 M 120 Sbjct: 150 R 150 >gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ ++FG+ EA + EA E + +++V+D M + Sbjct: 5 NVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + + Sbjct: 121 YTKQEQQEEIQ 131 >gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 235 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + + G+ VF A EA E E E+LP+ +++D + Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVE-EVLPDLIILDLMLPKKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE VR+ D+ + + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANL 116 Query: 119 QMQKSKDEN 127 + + Sbjct: 117 RRHDNAKTQ 125 >gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 +++ + + Sbjct: 121 YTKQEQQEEVQ 131 >gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 245 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A + P+ +V+D M + Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATA-YRPDLVVLDIQMPRMDG 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + L + G AGA+ +L+KPF + L +R L + Sbjct: 70 LTAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128 >gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 243 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETF-HNTTPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA + + +P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTF-RNTIPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QK 122 + Sbjct: 123 VE 124 >gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 228 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + G+ A+ E P+ +++D + + Sbjct: 7 KILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFF-EYKPDLVLLDVMLPHMDGI 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRKESE---TPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122 Query: 121 QKSKDENQ 128 ++E++ Sbjct: 123 YNVENEDK 130 >gi|281355429|ref|ZP_06241923.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281318309|gb|EFB02329.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 231 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++++ R+ N G+ V S EA E P+ +++D + G+ Sbjct: 5 KILVVEDEEAIQELIRYNLNKDGYDRVRCCESGEEALAAA-TEFAPDLILLDLMLPGMDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + + L + + ++ G GA+ +L KPF+ + L ++ + + Sbjct: 64 LAVCRRLKSDTRTSAIPIIMLTAKSEESDIVIGLEMGADDYLPKPFSPKVLIARIKSVLR 123 Query: 120 MQKSKD 125 K D Sbjct: 124 RVKPSD 129 >gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 243 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA + E +P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIF-HEAIPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QK 122 + Sbjct: 123 VE 124 >gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp. HTCC2999] Length = 228 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ +R++ + + GF V EA A + E P+ +++D + G Sbjct: 1 MSRSILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMV-EPYPDLVLLDWMLPGG 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ ++ V L + + I G AGA+ ++ KPF+ + L ++ + Sbjct: 60 SGVQLARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAV 119 Query: 118 PQM 120 + Sbjct: 120 MRR 122 >gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 242 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E K P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAN-PDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 235 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ R + G+ V A A +FC ++ +P+ +++D + G+ Sbjct: 5 TILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQ-VPDLIILDIMLPGIDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L + + + G GA+ ++ KPF L ++ L + Sbjct: 64 EVCKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRR 123 Query: 121 QKSKD 125 ++ D Sbjct: 124 TENND 128 >gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 237 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + + GF A A E+ + + P+ +V+D + G+ Sbjct: 1 MK-ILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQ-QPDLIVLDLMLPGLD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +RQ P D ++ L + + + G GA+ +L+KPF+ L +R L Sbjct: 59 GLEVCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 234 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ + V AT EA + E +++++D + + Sbjct: 1 MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEP-FDFIILDLMLPSLS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GLDVTCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERR 119 Query: 121 QKSKDE 126 +S+ + Sbjct: 120 SQSQPQ 125 >gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC 7002] gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC 7002] Length = 242 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA + E P+ +V+D M Sbjct: 7 RILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFD-EADPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QK 122 + Sbjct: 123 VE 124 >gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 249 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ + G+ + A EA E E E P+ +V+D M + Sbjct: 6 KILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEK-PDLIVLDVMMPRMNGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L + I G GA+ +L KPF+ + L ++ + + Sbjct: 65 QVCQTLRESTG---VPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRR 121 >gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] Length = 233 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+V+ ++++ + G V A +A+ E LP+ +++D + G Sbjct: 3 TTILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAE-LPDLILLDWMLPGASG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R V V L + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 62 ITLARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVLR 121 Query: 120 MQKSK 124 + + Sbjct: 122 RRAPQ 126 >gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Angola] gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis Angola] Length = 230 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 4 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 122 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 123 RISPMAVEEVIE 134 >gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 235 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD H + ++ R + GF V A A + + P+ +++D + G+ Sbjct: 1 MAKILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKE-TENYRPDLILLDLMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ P D+ V + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARL 119 Query: 119 QMQ 121 + + Sbjct: 120 RRR 122 >gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC341] gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC586] gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC341] gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC586] Length = 229 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ + ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] Length = 236 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++LLV+ ++++ + G V A A + ++ LP+ +++D + G+ + Sbjct: 4 NILLVEDEPAIQELIAANLSRAGHHVVRAADAEAA-QRLVRDALPDLVLLDWMLPGMSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F +R ++ + L + + +AG GA+ ++ KPF+ L ++ + + Sbjct: 63 DFARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVLRR 122 Query: 121 QKSKD 125 + + Sbjct: 123 RAPQA 127 >gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 243 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E K P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRK-TEPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB [Aromatoleum aromaticum EbN1] gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB [Aromatoleum aromaticum EbN1] Length = 235 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 63/132 (47%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++LLV+ ++++ + G V A+ EA + ++ LP+ +++D + G+ + Sbjct: 4 NILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRL-RDALPDLVLLDWMLPGMTGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF +R ++ + L + + +AG +GA+ ++ KPF+ L + + + Sbjct: 63 EFARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVLRR 122 Query: 121 QKSKDENQFLDA 132 + + ++A Sbjct: 123 RAPQTTEDAVEA 134 >gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 235 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+ D ++ GF VFEA +A E +L P+ +++D M + + Sbjct: 5 KILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVE-DLQPDLIILDWMMPHMSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E R D+ V L + G GA+ ++ KPF+ L ++ L + Sbjct: 64 EVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALLRR 123 Query: 121 QK 122 + Sbjct: 124 AR 125 >gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] Length = 240 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R+ G+ V A E EK + +++D + + Sbjct: 6 KRILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHS-FDLIILDLMLPKLSG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + ++V + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 65 -ERVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRA 123 Query: 122 KSKDE 126 S+ E Sbjct: 124 HSEAE 128 >gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 242 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E K P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSD-PDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V + + G+ EA+E E P+ +++D + + Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFL-EYKPDLVLLDIMLPHIDGV 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + + L + D + GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRKD---STIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 +EN+ +A+ Sbjct: 123 YNVDNENK--EAL 133 >gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1383 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 8/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL D + +R+ + L + + + V A E + P+ ++ D M Sbjct: 631 RILLADDNGDMREYVKRLLSQY-YEVETVADGIAALEAIRRHP-PDLVLSDVMMPRLNGF 688 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 E + +R+ PL ++ + L E ++ G ++GA+ +L+KPF+ L + + Sbjct: 689 ELLQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFSARELLARIEATLKM 748 Query: 120 ---MQKSKDENQFLDA 132 Q++ + Q L A Sbjct: 749 AQLRQQAAQKEQKLRA 764 >gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] Length = 235 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 9/135 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD +R++ G+ V A A + + +++D + LE Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRA---PEADLVLLDIMLPEVDGLE 59 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 ++ P + + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 121 ---QKSKDENQFLDA 132 QK EN+ + Sbjct: 120 ASVQKGSRENKEREE 134 >gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] Length = 233 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELF-THGGIDLVLLDLMLPGID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTTLCRRIREQSR---VPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVL 116 Query: 119 QMQKSKDEN 127 + +S + Sbjct: 117 RRNQSAQQQ 125 >gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxidans DMS010] gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxydans DMS010] Length = 230 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+V+ +R + GF +F +K+ P+ +++D + G Sbjct: 3 TSVLVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQ-QPDMILLDWMLPGIDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +EFI +R ++ V L + + E M+ G GA+ ++ KPF+ L +R + + Sbjct: 62 IEFIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLR 121 Query: 120 MQK--SKDENQFLDA 132 + S DE Q L + Sbjct: 122 RCQPDSSDEGQQLQS 136 >gi|308185867|ref|YP_003929998.1| phosphate regulon transcriptional regulatory protein phoB [Pantoea vagans C9-1] gi|317047132|ref|YP_004114780.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|308056377|gb|ADO08549.1| Phosphate regulon transcriptional regulatory protein phoB [Pantoea vagans C9-1] gi|316948749|gb|ADU68224.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 229 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGKLI-EPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 252 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD +R++ GF V A + +A E+ P+ LV+D + + F Sbjct: 13 TLLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQND-PDLLVLDVMLPDMDGF 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V +L D I G G + ++ KPF+ E + +R + + Sbjct: 72 TVTRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 131 Query: 123 SKDEN 127 + DE Sbjct: 132 ALDEE 136 >gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 237 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + E E +P+ +++D + Sbjct: 3 KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-ETMPDLILLDIMLPLKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKSKDENQ 128 + Sbjct: 119 RHAQTANQE 127 >gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis] Length = 233 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF VF A EA E KE+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAF-KEVQPDLILLDLMLPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ +D + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLDVA-REIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRR 118 >gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] Length = 1131 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 3/132 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 LL+VD + +V + G+ V A S +A + E++ P +++D M + E Sbjct: 725 LLVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQ-QPALILLDIMMPEMSGYE 783 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ ++ + L + I G +GAN +L KPFN+E L + Q Sbjct: 784 VCHILREEYSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHLQAG 843 Query: 122 KSKDENQFLDAI 133 K++ + Q A+ Sbjct: 844 KTEVQRQKNAAL 855 >gi|206891156|ref|YP_002249147.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743094|gb|ACI22151.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 356 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 6/137 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + ++ R G+ EA EA + E+ P+ +++D M + Sbjct: 6 QTILIVDDNIDTVELLRKRLKAEGYNTEEAYDGEEALKKVY-EVYPDLIILDVMMPKMDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + L + D E + G GA+ ++ KPF+ L +R L Sbjct: 65 YEVCQRLKTDDRTKFIPIIMLTAKSDVESKVKGFDIGADDYVPKPFDYRELSARVRSLIT 124 Query: 120 MQKSKD---ENQFLDAI 133 +++ + E + +++ Sbjct: 125 RKETAEKVIEEEKTESV 141 >gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 231 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ R+ GF V EA A E + +V+D + G+ Sbjct: 1 MARILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTG-RIDLVVLDIMLPGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ D+ V L + G GA+ ++ KPF+ L ++ Sbjct: 60 GLTVCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARL 119 Query: 119 QMQKSKDENQ 128 + E + Sbjct: 120 RRHVPVQEAR 129 >gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB, [Edwardsiella ictaluri 93-146] gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative [Edwardsiella ictaluri 93-146] Length = 229 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R + + G+ EA S A E P+ +++D + G Sbjct: 4 RILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLC-EPYPDLILLDWMLPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ P D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLIKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 >gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium botulinum H04402 065] Length = 228 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V + + G+ + EA+E E P+ +++D + + Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFL-EYKPDLVLLDIMLPHIDGV 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + + L + D + GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRKD---STIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 +EN+ +A+ Sbjct: 123 YNVDNENK--EAL 133 >gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 229 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E E P +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMC-EPYPELILMDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ L + V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 245 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A + P+ +V+D M + Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAA-YRPDLVVLDIQMPRMDG 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + L + G AGA+ +L+KPF + L +R L + Sbjct: 70 LTAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128 >gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ + GF V A +A E + E P+++++D + + Sbjct: 1 MIKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSE-QPDFIILDLMLPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + + L + D I G GA+ +L KPF+ + ++ + Sbjct: 60 GMDVCKTLRQERN--NTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAIL 117 Query: 119 QMQKSKDE 126 + ++ E Sbjct: 118 RRFQNTPE 125 >gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 236 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD V ++ R G+ V A A E + P+ +V+D M G+ Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELA-RSRNPDLIVLDLLMPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ P + + L D + G GA+ ++ KPF+ L + Sbjct: 60 GYSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARL 119 Query: 119 QMQKSKD 125 + K ++ Sbjct: 120 RRDKKEE 126 >gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V + + G+ + EA+E E P+ +++D + + Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFL-EYKPDLVLLDIMLPHIDGV 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + + L + D + GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRKD---STIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 +EN+ +A+ Sbjct: 123 YNVDNENK--EAL 133 >gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 235 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 1/125 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ + V A +A E + +++D + + Sbjct: 1 MSRVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEK-FDVILLDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + + G GA+ ++ KPF+ + M+ + + Sbjct: 60 GVEVTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRR 119 Query: 121 QKSKD 125 ++ Sbjct: 120 YHEEE 124 >gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 235 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + + G+ VF A EA E E E+LP+ +++D + Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVE-EVLPDLIILDLMLPKKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE VR+ D+ + + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANL 116 Query: 119 QMQKSKD 125 + + Sbjct: 117 RRHDNAK 123 >gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 243 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 9 QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEA-YAPDLIVLDIQMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ + L + G AGA+ +L+KPF + L +R L + Sbjct: 68 LTAARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 >gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 235 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + ++ ++ V A E ++E P+ +++D + Sbjct: 1 MAKILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEP-PDLIILDVMLPKVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R P + + + + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANL 119 Query: 119 QMQK 122 + + Sbjct: 120 RRAQ 123 >gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 243 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 9 QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAES-YAPDLIVLDIQMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ + L + G AGA+ +L+KPF + L +R L + Sbjct: 68 LTAARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 >gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 242 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E K P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSE-PDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 225 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + + G+ A E + P+ +++D + G++ Sbjct: 1 MKTILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQP-PDLILLDLMLPGMM 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + V L + + G GA+ +++KPF+ L ++ + Sbjct: 60 GMEVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis KIM 10] gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. F1991016] gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis KIM D27] gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis Z176003] gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM 10] gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. E1979001] gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. B42003004] gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis D106004] gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis D182038] gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis KIM D27] gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis Z176003] Length = 239 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 13 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 72 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 132 RISPMAVEEVIE 143 >gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 234 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ + V AT EA + E +++++D + + Sbjct: 1 MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEP-FDFIILDLMLPSLS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GLDVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERR 119 Query: 121 QKSKDE 126 +S+ + Sbjct: 120 SQSQPQ 125 >gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. AzwK-3b] gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. AzwK-3b] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+LLV+ R+V + GF V A + EA E P+ +V+D + + Sbjct: 7 SVLLVEDEPAQREVLSYNLEADGFRVTTAENGEEAL-LLVDEAAPDIIVLDWMLPNVSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ +V + L + + G GA+ +++KP++ L +R L + Sbjct: 66 EVCRQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRR 125 Query: 121 QKSKDENQFLD 131 + + L+ Sbjct: 126 SRPSAVGERLE 136 >gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 237 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + E E +P+ +++D + Sbjct: 3 KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-ETMPDLILLDIMLPLKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKSKDENQ 128 + Sbjct: 119 RHAQTANQE 127 >gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80] gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52] gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587] gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3] gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457] gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33] gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MZO-2] gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39] gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2] gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae BX 330286] gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae B33] gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TMA 21] gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC9] gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TM 11079-80] gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae bv. albensis VL426] gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae 12129(1)] gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MJ-1236] gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51] gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226] gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10] gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholera CIRS 101] gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573] gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603] gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae INDRE 91/1] gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC27] gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio mimicus MB-451] gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385] gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MAK 757] gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80] gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52] gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587] gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3] gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51] gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457] gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33] gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39] gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MZO-2] gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226] gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2] gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae 12129(1)] gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae bv. albensis VL426] gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TM 11079-80] gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC9] gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TMA 21] gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae B33] gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae BX 330286] gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MJ-1236] gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10] gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholera CIRS 101] gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603] gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573] gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio mimicus MB-451] gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC27] gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae INDRE 91/1] gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385] gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MAK 757] gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio cholerae LMA3894-4] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ + ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 INLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|304395459|ref|ZP_07377342.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304356753|gb|EFM21117.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGRLI-EPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 227 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + + GF V EA +A + K N +++D + + Sbjct: 5 RILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEY-NLIILDLMLPVIDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ +D+ + L + + G GA+ +++KPF+ L ++ L + Sbjct: 64 TVCKEVRKK---SDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRR 120 Query: 121 QKSKDENQFLD 131 K Q L+ Sbjct: 121 LGPKGPEQTLE 131 >gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAVIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L +D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L++D +R + R G+ V EA + EA E +K+ +V D M + Sbjct: 1 MNAILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIV-DLMMPEID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + L + + G GA+ +L+KPF+ + L ++ L Sbjct: 60 GWKVCRDVRER---SDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALL 116 Query: 119 QMQK 122 + + Sbjct: 117 RRSR 120 >gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus halophilus Nc4] gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus halophilus Nc4] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD +R++ + G+ A +A + E P+ +++D + G+ Sbjct: 4 TILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRL-NESHPDLILLDWMLPGISGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + + L D E + G GA+ ++ KPF+ L ++ + + Sbjct: 63 DLARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVLRR 122 >gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] Length = 238 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + + + GF V A E E P+ +++D + Sbjct: 1 MKKILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAEN-PDLVILDLMLPKIE 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ ++V + + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCREIRK---TSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANL 116 Query: 119 QMQK 122 + Q Sbjct: 117 RRQH 120 >gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51] gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L++D +R + R G+ V EA + EA E +K+ +V D M + Sbjct: 1 MNAILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIV-DLMMPEID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + L + + G GA+ +L+KPF+ + L ++ L Sbjct: 60 GWKVCRDVRER---SDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALL 116 Query: 119 QMQK 122 + + Sbjct: 117 RRSR 120 >gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] Length = 247 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + + G+ V E + C++E N +V+D + G Sbjct: 9 KKILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQREN-FNIIVLDIMLPGEDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L + + I G GA+ +++KPFN L + + + Sbjct: 68 LSICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRR 126 >gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9] gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9] Length = 229 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ ++++ G V A S A + K LP+ +++D + G + Sbjct: 4 TILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAA-QTLVKNALPDLVLLDWMLPGQSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF +R +V + L D + IAG GA+ ++ KPF+ L+ ++ + + Sbjct: 63 EFARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 229 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAVIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L +D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] Length = 240 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R + GF V +A + +A P+ +++D M G L Sbjct: 12 RILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDN-QPDLVLLDWMMPGTTGL 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +++ L + L + + + IAG +GA+ ++ KPF+ L + + + Sbjct: 71 ELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLRR 130 Query: 121 QKSKDENQ 128 + + Sbjct: 131 IGREALKE 138 >gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118] gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] Length = 236 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V+ A EA + KE+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQV-KEVEPDLILLDLMLPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 Query: 121 QKS 123 Q + Sbjct: 119 QSA 121 >gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea sp. MED297] gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea sp. MED297] Length = 240 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R+V G+ EA++ +A + P+ +++D M Sbjct: 9 RSILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQK-PDLILLDWMMPQVSG 67 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +EF +++ PL ++ + L + + + I G AGA+ ++ KPF+ L ++ + + Sbjct: 68 VEFARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAVLR 127 Query: 120 M 120 Sbjct: 128 R 128 >gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei 87.22] gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces scabiei 87.22] Length = 244 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR R G+ A +A E P+ +++D M + Sbjct: 11 QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATA-YRPDLVILDVQMPRMDG 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + L + G AGA+ +L+KPF + L +R L + Sbjct: 70 LTAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128 >gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 247 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD +R+ + D GF V A + +A + P ++ D M G+ Sbjct: 19 RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLL-STAQPQLIISDIMMPGMDGY 77 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F+A +R++ + + V +L + I G RAG +++L KPF+ E L + L + Sbjct: 78 QFLAQLRKLEPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 137 Query: 121 QKSKDENQFLD 131 ++ ++ + Sbjct: 138 SRAASPSEVVA 148 >gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ +++++ + G+ V A +A E KE P+ +++D + + Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEK-PDLVLLDVMLPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++ + L + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARL 119 Query: 119 QMQK 122 + ++ Sbjct: 120 REER 123 >gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum EA 2018] Length = 232 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + K+ + + G+ V A EA E + E +P +++D + + Sbjct: 5 KILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGE-VPQLVLLDLMLPVMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +++ V + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 DVCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRR 123 Query: 121 QK 122 K Sbjct: 124 TK 125 >gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 243 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA + E +P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIF-HEAIPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QK 122 + Sbjct: 123 VE 124 >gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 232 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R G+ V A E E + P+ +++D M + Sbjct: 5 KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNA-VKPDMVLLDVMMPRMDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 64 EVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120 >gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia frederiksenii ATCC 33641] gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia frederiksenii ATCC 33641] Length = 239 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 13 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 72 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 132 RISPMAVEEVIE 143 >gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia mollaretii ATCC 43969] gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia mollaretii ATCC 43969] Length = 239 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 13 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 72 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 132 RISPMAVEEVIE 143 >gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103] gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103] Length = 245 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 19 KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAISKLI-EPWPDLILLDWMLPGGSG 77 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 78 IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMR 137 Query: 120 M 120 Sbjct: 138 R 138 >gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 236 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + ++ GF V +A S EA E + E + + +V+D + G+ Sbjct: 9 TVLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETV-DLVVLDLMLPGIDGW 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + V L + + + + G GA+ +++KPF+ + L ++ + + Sbjct: 68 EVCRQIRSN---SQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRR 124 Query: 121 QKSKDENQ 128 + Sbjct: 125 AGETKPRR 132 >gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis] Length = 236 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+V+ ++++ + G V A +A + + LP+ +++D + G Sbjct: 3 TSILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQA-QILIRAELPDLILVDWMLPGSSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R + V L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 62 INLARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVLR 121 Query: 120 MQKSK 124 + + Sbjct: 122 RRAPQ 126 >gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] Length = 234 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+ D +R++ R F GF V EA A + E P+ L++D M Sbjct: 6 QKILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEK-PDILLLDIMMPVLDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+M +D+ + + + D + IAG GA+ ++ KPFN + ++ + + Sbjct: 65 IEVCKQVRKM---SDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLR 121 Query: 120 MQKSKDE 126 ++++ Sbjct: 122 RAGTQEK 128 >gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 221 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ +RK + G+ V A + +A + EKE LP+ +++D + + Sbjct: 1 MKAKVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKE-LPDVVLLDVMLPEM 59 Query: 60 LEFIAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F R + ++ V L + E + G ++GA+ +++KPF+ E L + + Sbjct: 60 NGFTVLERIREDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVL 119 Query: 119 QMQKSKDE 126 + + ++ Sbjct: 120 RRKGYSEK 127 >gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 235 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+++ + ++ R+ G+ V + E E C +EL P+ +++D + + Sbjct: 4 TILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKC-RELSPDLVLLDLMLPDIDGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 DVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVLRR 122 Query: 121 QKSK-DENQFLD 131 K++ +EN+ + Sbjct: 123 SKNETEENEIIK 134 >gi|89072346|ref|ZP_01158925.1| putative DNA-binding response regulator [Photobacterium sp. SKA34] gi|89051878|gb|EAR57330.1| putative DNA-binding response regulator [Photobacterium sp. SKA34] Length = 243 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ GF V A E + C P+ +++D M G Sbjct: 5 KQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEE-MKRCLAGGYPDLILLDIMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H+R+ +DV + L + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 FTLCQHIRK---TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILR 120 Query: 120 MQKSKD 125 K D Sbjct: 121 RSKVSD 126 >gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 243 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ + G+ A +A E P+ LV+D M + Sbjct: 9 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAES-YRPDLLVLDIQMPRMDGL 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ V V L + G AGA+ +L+KPF + L +R L + Sbjct: 68 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 125 >gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea ananatis AJ13355] Length = 245 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 19 KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVSKLI-EPWPDLILLDWMLPGGSG 77 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 78 IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMR 137 Query: 120 M 120 Sbjct: 138 R 138 >gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1111 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + +V + + + + +AT+ EA EK P+ +++D M + Sbjct: 717 KILVVDDEPVNIQVIANNLSLQNYAITQATNGLEALTLIEKGFKPDLILLDVMMPRMTGY 776 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ L +++ + L + ++ G +GAN +L KPF+++ L ++ ++ Sbjct: 777 EVCQKLREKYLHSELPILMLTAKNQVTDLVDGLSSGANDYLSKPFSKQELLARIKTHLRL 836 Query: 121 QK 122 K Sbjct: 837 LK 838 >gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 245 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E P+ +V+D M Sbjct: 10 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSE-PDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 125 >gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 229 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|90577311|ref|ZP_01233122.1| putative DNA-binding response regulator [Vibrio angustum S14] gi|90440397|gb|EAS65577.1| putative DNA-binding response regulator [Vibrio angustum S14] Length = 243 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ GF V A E + C P+ +++D M G Sbjct: 5 KQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEE-MKRCLAGGYPDLILLDIMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H+R+ +DV + L + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 FTLCQHIRK---TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILR 120 Query: 120 MQKSKD 125 K D Sbjct: 121 RSKVSD 126 >gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ H N GF + EA + EA + E + + +++D M + Sbjct: 1 MTRILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLET-VKVDLVIMDIMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R DV + L + + + + G GA+ +L+KPF+ L ++ L Sbjct: 60 GWELCRELR---DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALL 116 Query: 119 QMQK 122 + + Sbjct: 117 KRYR 120 >gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23] gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23] gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W] gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II] Length = 235 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ + V AT EA + E +++++D + + Sbjct: 1 MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEP-FDFIILDLMLPSLS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GLDVTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERR 119 Query: 121 QKSKDE 126 +S+ + Sbjct: 120 SQSQPQ 125 >gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ H N GF + EA + EA + E + + +++D M + Sbjct: 3 MTRILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLET-VKVDLVIMDIMMPEMD 61 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R DV + L + + + + G GA+ +L+KPF+ L ++ L Sbjct: 62 GWELCRELR---DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALL 118 Query: 119 QMQK 122 + + Sbjct: 119 KRYR 122 >gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia rohdei ATCC 43380] gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia rohdei ATCC 43380] Length = 239 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 13 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 72 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 132 RISPMAVEEVIE 143 >gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB [Sagittula stellata E-37] gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB [Sagittula stellata E-37] Length = 229 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ R+V + GF V A + EA E P+ +V+D + + Sbjct: 7 TVLLVEDEPAQREVLSYNLEAEGFRVASAGNGEEAL-LMMAEENPDIVVLDWMLPNVSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P +V + L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 ARPSAAGLRLE 136 >gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8] gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8] Length = 247 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + G+ V +A EA + E + + ++D + G+ Sbjct: 12 KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDV-DMFIVDIMLPGIDG 70 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R M + V +L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 71 FELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 130 Query: 120 M 120 Sbjct: 131 R 131 >gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 9 QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEA-YDPDLIVLDIQMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ + L + G AGA+ +L+KPF + L +R L + Sbjct: 68 LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 >gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 243 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA + K P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKAD-PDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QK 122 + Sbjct: 123 VE 124 >gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 244 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAA-YRPDLVVLDIQMPRMDG 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + L + G AGA+ +L+KPF + L +R L + Sbjct: 70 LTAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128 >gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 229 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 4/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + KV G+ V S E +E P+ +V D M + Sbjct: 1 MKRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQE-QPDVVVSDVVMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ G V +L + + + G GA+ +++KPF L + Sbjct: 60 GFEFCRQLRQQRGGELVPFIFLSSRGEIDDRVQGYERGADDYIIKPFEPLELVAKIEAQI 119 Query: 119 QM-QKSKDENQFL 130 + ++++ E L Sbjct: 120 ERSRRTQSEILRL 132 >gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 252 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME---GV 59 +L+VD + + R GF V A + + P+ +++D M Sbjct: 18 RVLVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALR-INPDIIILDVMMPPGIDG 76 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ P ++ + L + IAG R GA+ +L KPF+ + L +R + + Sbjct: 77 LEVCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILR 136 Query: 120 MQ 121 Q Sbjct: 137 RQ 138 >gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 242 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA + K P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSD-PDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|329296532|ref|ZP_08253868.1| winged helix family two component transcriptional regulator [Plautia stali symbiont] Length = 229 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + + EA A E P+ +++D + G Sbjct: 3 KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAIGKLI-EPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREAMTRDIPVMMLTALGEEEDRVRGLELGADDYITKPFSPKELMARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 244 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + F D GF+V A E E + E +P+ ++ D M Sbjct: 19 RVLLVDDEPGLRTAVQAYFEDEGFIVSTAADGEEGWEKAQSE-VPDVVLSDVMMPRVDGF 77 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + IAG RAG + ++ KPF+ + L +R + Q Sbjct: 78 GLLKLLREDERLGGTPVIFLTAKGMTADRIAGFRAGVDDYIPKPFDPDELVARVRNVVQR 137 Query: 121 QK 122 Q+ Sbjct: 138 QE 139 >gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 9 QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEA-YAPDLIVLDIQMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ + L + G AGA+ +L+KPF + L +R L + Sbjct: 68 LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 >gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 243 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E K+ P+ +V+D M Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQD-PDLVVLDVMMPKLDGY 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 67 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 >gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio vulgaris str. Hildenborough] gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio vulgaris str. Hildenborough] gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris DP4] gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris RCH1] Length = 229 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ R GF V A + + E ++ +P +++D + G+ F Sbjct: 5 RILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRH-VPGLVLLDLMLPGMSGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P V V L + I G GA+ +++KPF+ L +R + + Sbjct: 64 DVCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAVLKR 123 Query: 121 QKSKDE 126 E Sbjct: 124 VTGAQE 129 >gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125] gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125] Length = 229 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 59/124 (47%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF V+ A + EA + E+E + + +V+D M+ + F Sbjct: 6 NILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPM-DLVVLDVMMDEMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A +++ + + + L + + G + GA+ +++KPF+ L + + + Sbjct: 65 TAC-KEIRAFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQ 123 Query: 123 SKDE 126 + Sbjct: 124 GIQQ 127 >gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia bercovieri ATCC 43970] gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia bercovieri ATCC 43970] Length = 239 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 13 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 72 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 132 RISPMAVEEVIE 143 >gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 239 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLDA 132 K + E Q +A Sbjct: 120 RTKLQQEEQVAEA 132 >gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 62/131 (47%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD +R++ ++FG+ EA + EA E E +++++D M + Sbjct: 5 KVLLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLE-EAHYDFVILDIMMPEMDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 AVCKEIRK---TSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLRR 120 Query: 121 QKSKDENQFLD 131 + + + L+ Sbjct: 121 YTKQGQQEELE 131 >gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 223 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D + +V + GF V A + + K +P+ +++D + Sbjct: 1 MK-ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVF-KNEMPDLVILDIMLPKKD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++ +++ + L + + + G GA+ +++KPF+ + L ++ + Sbjct: 59 GYDVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115 Query: 119 QMQKSK 124 + + + Sbjct: 116 RRTQGE 121 >gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 224 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M LLLVD + + G+ + T EA + ++E + +++D M Sbjct: 1 MKKLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETY-DLILLDIMMPETD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+M + V V L D ++ G + GA+ ++ KPF+ + L + + Sbjct: 60 GWEVCRQIRKM---SQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVL 116 Query: 119 QMQKSKDENQFLD 131 + ++++N+ ++ Sbjct: 117 RRS-NQNQNETIE 128 >gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 232 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + L N G+ V A EA K P+ +++D + Sbjct: 1 MKKILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKF-KLFNPDLVLLDIMLPEKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ ++V + L + + + G + GA+ ++ KPF + L + + Sbjct: 60 GWEVCKEIRKI---SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVL 116 Query: 119 QMQKS 123 + +S Sbjct: 117 RRYQS 121 >gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 276 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V +V G V A A P+ +V+D + G+ Sbjct: 19 VLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTH-RPDLVVLDLMLPGMDGLE 77 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V L D + I G GA+ ++ KPF+ L + + + + Sbjct: 78 VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTR 135 >gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris MG1363] gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363] gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris MG1363] gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp. cremoris NZ9000] gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis CV56] Length = 233 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF VF A EA E KE+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAF-KEVQPDLILLDLMLPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ +D + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLDVA-REIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRR 118 >gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ ++++ G V A + A + LP+ +++D + G + Sbjct: 4 NILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLV-RNALPDLVLLDWMLPGASGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + L D + +AG GA+ ++ KPF+ L ++ + + Sbjct: 63 DVAKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas elongata DSM 2581] gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB [Halomonas elongata DSM 2581] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ + V EA + A P+ +++D M G Sbjct: 4 KTVLIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDH-QPDLVLLDWMMPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ ++ + L + + + I G AGA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1416 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R + L + + V A + + +P+ ++ D M G+ F Sbjct: 644 RILLADDNSDMRDYVKRLLSQQ-YEVESVADGLAALDSA-RGRVPDLVLTDVMMPGLDGF 701 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P V + L E + G AGA+ +L+KPF+ L + +M Sbjct: 702 GLLQELRANPQTKKVPIILLSARAGEEARVEGLEAGADDYLIKPFSARELLARVEAALKM 761 Query: 121 QKSKDE 126 ++E Sbjct: 762 AHLREE 767 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 5/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD R+ + G V S EA + E P+ L+ D M Sbjct: 1295 ILVVDDDDDTREFHTFVLEQAGAKVMAVASAKEALQAL-AESEPDILLSDIGMPETDGYM 1353 Query: 62 FIAHVRQMP--LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R + + L +G L KP + L A+ L Sbjct: 1354 LMRQIRALQLKQAKQIPAIALTAYAGEINQQQAIASGFQRHLSKPVEPDELVKAIATLIG 1413 Query: 120 M 120 Sbjct: 1414 R 1414 >gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E P+ +V+D M Sbjct: 11 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAE-PDLVVLDVMMPKLDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 Query: 121 QK 122 + Sbjct: 127 VE 128 >gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 234 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ + ++ R+ G+ V + + E + E P+ +++D + L Sbjct: 4 TVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAL-EGKPDLVILDLMLPDVDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ ++ + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 EICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122 Query: 121 QKSKDENQ 128 + DE + Sbjct: 123 TQQPDEEK 130 >gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 242 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E K P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAD-PDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] Length = 1338 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ +H +R+ R + V EA E E LP+ ++ D M L Sbjct: 1089 TVLVVEDNHELRQFIRTEL-AVTYQVIEAADGVEGIEKA-SNQLPDLIISDLMMPKADGL 1146 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R P + + L + FE I G G + +L KPF+ L ++ + Sbjct: 1147 ELLRTLRNNPQTCHIPIIILSAKASFESKITGLETGGDDYLTKPFSPRELVLRIKNTLER 1206 Query: 121 QKSKDE 126 ++ E Sbjct: 1207 REKLKE 1212 >gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + ++ R GF V + +A E E PN +++D + G Sbjct: 5 TKVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNE-APNIVILDIMLPGADG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R++ +++ V L + + + G GA+ +L+KPF + L ++ + + Sbjct: 64 WQVCREIRKI---SNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLR 120 Query: 120 MQKSKDEN 127 + KD + Sbjct: 121 RYEHKDSD 128 >gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 236 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + A EA E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFE-EGKPDLVILDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 290 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V +V G V A A P+ +V+D + G+ Sbjct: 19 VLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTH-RPDLVVLDLMLPGMDGLE 77 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V L D + I G GA+ ++ KPF+ L + + + + Sbjct: 78 VCRRMRARHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTR 135 >gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7] gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1] gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas aeruginosa PA7] gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAVIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia intermedia ATCC 29909] gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia intermedia ATCC 29909] Length = 239 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P+ +++D + G Sbjct: 13 RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 72 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 132 RISPMAVEEVIE 143 >gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 221 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+V F V EA +A E + +++D + G+ Sbjct: 1 MARVLVVDDDPAIREVLAAYLARERFEVLEAEDGLQALEQA---PGADLVILDLMLPGMD 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + E+ + G GA+ ++ KPF+ + +R L + Sbjct: 58 GWRVAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRR 117 Query: 121 QKSKDEN 127 KDE Sbjct: 118 VGLKDEL 124 >gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 240 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R + V +A E K + +++D + V Sbjct: 9 RRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHH-FDLVILDLMLPRVPG 67 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 68 ERVCRAIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124 Query: 120 MQKSKDENQF 129 + E Q Sbjct: 125 RVHADSEPQR 134 >gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] Length = 232 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + L N G+ V A EA K P+ +++D + Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKF-KLFNPDLVLLDIMLPEKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ ++V + L + + + G + GA+ ++ KPF + L + + Sbjct: 60 GWEVCKEIRKI---SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVL 116 Query: 119 QMQKS 123 + +S Sbjct: 117 RRYQS 121 >gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 219 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 4/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D I++K+ +L G++V S + + E P+ +V D M + Sbjct: 1 MKRILVIDDDPILQKILENLLTQAGYLVAVVLSGKQGLDIWL-EFQPDLIVSDVRMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++R P G + +L + D E + G +GA+ ++ KPF + L + Sbjct: 60 GFEFCRYIRSQPTGQLIPFLFLSSQTDVEARVEGHFSGADDYIAKPFEMKELLAKIERQL 119 Query: 119 QMQKS-KDENQFLDA 132 ++ + E Q L A Sbjct: 120 ARIENIRAEMQRLAA 134 >gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD +R++ F GF V EA EA E ++ P+ +++D M Sbjct: 4 KTVLIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVE-QVKPDIVILDIMMPVLDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ + V + L + I G GA+ ++ KPFN + + ++ + + Sbjct: 63 FEVCQQIRK---YSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILR 119 Query: 120 MQKSKDE 126 + + Sbjct: 120 RTAAPQQ 126 >gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51] gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R++ R GF EA + A E + + +++D + G+ Sbjct: 2 RILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKV-RNGTFDLIILDLMIPGLDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ T + + L + + I G GA+ +++KPF+ L ++ + + Sbjct: 61 TVCKVLRKE---TQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRR 117 Query: 121 QKSKDENQFL 130 + + L Sbjct: 118 LDGETSKEHL 127 >gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 243 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E P+ +V+D M Sbjct: 7 RILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATF-HESDPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] Length = 236 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ ++++ G V A A + +E LP+ +++D + G + Sbjct: 4 NILLVEDEPAIQELIAANLARAGHHVVRANDAESA-QRIVREALPDLVLLDWMLPGASGV 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF +R D+ + L + + + GA+ ++ KPF+ L ++ + + Sbjct: 63 EFARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 230 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + ++ R GF V + +A E E PN +++D + G Sbjct: 7 TKVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNE-APNIVILDIMLPGADG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R++ +++ V L + + + G GA+ +L+KPF + L ++ + + Sbjct: 66 WQVCREIRKI---SNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLR 122 Query: 120 MQKSKDEN 127 + KD + Sbjct: 123 RYEHKDSD 130 >gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 242 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E K P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRK-TEPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 243 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA + +P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTF-HHAIPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] Length = 235 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V AT EA E + +++++D + + Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQS-FDFILLDVMLPHMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++ + L + D I G GA+ +L KPF+ + ++ + + Sbjct: 60 GIEITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARR 119 >gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob [Photorhabdus asymbiotica] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A C E P+ +++D + G Sbjct: 3 RRILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSAL-ACLSEPYPDLVLLDWMIPGGSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +++ D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQIIKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205] Length = 249 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E + P+ +V+D M Sbjct: 11 TILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAF-RNTNPDLVVLDVMMPKLDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 126 >gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 234 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V AT E E ++ +++++D + + Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQS-FDFIILDVMLPTMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + L + D I G GA+ +L KPF+ + M+ + + Sbjct: 60 GMEITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QKSKDENQ 128 + + +++ Sbjct: 120 IEPRKQSK 127 >gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330] gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12] gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15] gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330] gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12] gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15] gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V A E E ++ +++++D + + Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQS-FDFIILDVMLPTMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + L + D I G GA+ +L KPF+ + M+ + + Sbjct: 60 GMEITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QKSKDENQ 128 + + +++ Sbjct: 120 IEPRKQSK 127 >gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 406 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A ++ P+ +V+D + + Sbjct: 160 RVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLA-RDFRPDAVVLDIMLPDMDGL 218 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L E +AG AG + ++ KPF+ E L +R L + Sbjct: 219 EVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAA 278 Query: 123 SKDE 126 E Sbjct: 279 RTTE 282 >gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD V +V GF V +A A P+ +V+D + G+ Sbjct: 8 TRVLVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARW-PDLVVLDLMLPGMDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V V L D E I G GA+ ++ KPF+ L + + + Sbjct: 67 LEVCRALRGRGP---VPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLR 123 Query: 120 MQK 122 + Sbjct: 124 RGR 126 >gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 240 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A +A P+ LV+D M G+ F Sbjct: 13 RLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMA-ASFRPDLLVLDVMMPGLDGF 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V +L E ++G G + ++ KPF+ + + +R + + Sbjct: 72 GVVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRR 129 >gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] Length = 232 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R G+ V A E E + P+ +++D M + Sbjct: 5 KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNA-VKPDMVLLDVMMPRMDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 64 EVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120 >gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 248 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 9/138 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L+++ +R+V + G+ V+ A + E + P+ +++D M Sbjct: 9 MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTH-QPDLILLDLMMSKK 67 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +RQ ++V + L + + I G GA+ ++ KPF+ L ++ + Sbjct: 68 DGWELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQII 124 Query: 118 PQMQKS--KDENQFLDAI 133 + E +FL + Sbjct: 125 LKRGNQIPIQEEEFLSEV 142 >gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J] gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J] Length = 236 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + A EA +E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAV-LAFEEEKPDLVILDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 237 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD +R+V + G+ V+ A EA + + P+ +++D M Sbjct: 8 ILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQ-RPDLIILDVMMPKLDGYG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+ + V + L D I G GA+ +++KPF+ + L +R + + Sbjct: 67 VCQAVRK---ASRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRRM 123 Query: 122 KSKD 125 ++ Sbjct: 124 ETTK 127 >gi|161524068|ref|YP_001579080.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160341497|gb|ABX14583.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 305 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 65 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 123 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 124 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 183 Query: 120 MQKS 123 +++ Sbjct: 184 RRRA 187 >gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family protein [Atopobium vaginae DSM 15829] gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] Length = 241 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R G+ V A E EK + +++D + + Sbjct: 6 KRILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHS-FDLIILDLMLPKLSG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + ++V + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 65 -ERVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRA 123 Query: 122 KSKDE 126 ++ E Sbjct: 124 HTESE 128 >gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 242 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA ++ P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTF-RDTEPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB [Thiomonas sp. 3As] Length = 244 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + ++ G A S EA +++LP+ L+ID + G+ Sbjct: 6 NILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEAL-RVIRDVLPDVLLIDWMLPGMSGV 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L + + G AGA+ ++ KPF+ + L +R + + Sbjct: 65 ALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124 Query: 121 QKSK 124 + + Sbjct: 125 RAPQ 128 >gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB [Acidiphilium multivorum AIU301] gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB [Acidiphilium multivorum AIU301] Length = 236 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+V+ + + R+ GF V EA EA E +P+ +++D + + +E Sbjct: 9 VLVVEDEAPLVTLLRYNLEKSGFRVDEAGDGGEALGRI-NEAMPDLVLLDWMLPTMSGIE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ P + V L + + + G GA+ ++ KPF+ E L +R L + Sbjct: 68 VCRQLRRKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRR 126 >gi|300867045|ref|ZP_07111713.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] gi|300334942|emb|CBN56879.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] Length = 1122 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD I R+V + + + + + EA++ EA E +P+ +++D M + Sbjct: 712 KVLIVDDEPINRQVLINNLSLYNYAITEASNGQEALTAMENGFIPDLILLDLMMPQMTGY 771 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R ++ + L + ++ G +GAN +L KP ++ + ++ + Sbjct: 772 EVCQKIRARFPTYELPIVMLTAKNQVADIVEGFESGANDYLSKPIQKQEMLARIKTHISL 831 Query: 121 QKS 123 K Sbjct: 832 AKL 834 >gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 233 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + R GF + + A E +++ P+ +++D + G+ Sbjct: 2 NILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQ-RPDVIILDLMLPGLDGL 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +RQ P D ++ L + + I G GA+ +++KPF+ L +R L + Sbjct: 61 EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120 >gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 7/133 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD +R++ GF V A + EA + E P+ +V+D + + F Sbjct: 17 LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAE-RPDLVVLDVMLPDLDGFT 75 Query: 64 --AHVRQMPLGT----DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R V V +L + + G GA+ ++ KPF+ E L +R + Sbjct: 76 VVRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAI 135 Query: 118 PQMQKSKDENQFL 130 + ++ L Sbjct: 136 LRRAGGPADDGRL 148 >gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + ++ R+ G+ V + + E + E P+ +++D + V Sbjct: 4 TVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAL-EGKPDLVILDLMLPDVDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ ++ + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 EICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122 Query: 121 QKSKDENQ 128 + +E + Sbjct: 123 TQQPEEEK 130 >gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI] gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120 Query: 121 QKSKDEN 127 +++ Sbjct: 121 YTKQEQQ 127 >gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 236 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 5/135 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ R G+ V A A E +E P+ +V+D + G L Sbjct: 5 KILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREK-PDLIVLDIMLPGVDGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ + + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 64 EVCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRR 123 Query: 121 --QKSKDENQFLDAI 133 + + +NQ + I Sbjct: 124 NFKAQQSDNQEKENI 138 >gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D +R + G+ A++ EA E ++E + +++D M + Sbjct: 5 MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEET-FHLVLLDVMMPELD 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R ++V + L + I G + GA+ ++ KPF+ L + + Sbjct: 64 GLTACMRIRE-FSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRR 122 Query: 121 QKSKDENQ 128 S + Q Sbjct: 123 THSFSKEQ 130 >gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 246 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A+ EA E K+ P+ +V+D M Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQD-PDLVVLDVMMPKLDGY 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 67 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 >gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 256 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+V+ + G+ A S E E P+ +++D + Sbjct: 3 TTILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPDISG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R V V L + + G GA+ ++ KPF+ L +R + + Sbjct: 63 TEVCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAILR 122 Query: 120 MQKSKDE 126 +K E Sbjct: 123 RAGTKAE 129 >gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium DO] gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V AT E E ++ +++++D + + Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQS-FDFIILDVMLPTMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + L + D I G GA+ +L KPF+ + M+ + + Sbjct: 60 GMEITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QKSKDENQ 128 + + +++ Sbjct: 120 IEPRKQSK 127 >gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 239 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGV 59 M ++L+VD +R + + F+ GF V A E ++ + +V+D + G+ Sbjct: 1 MPTVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGM 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R G + + L + ++ G GA+ ++ KPF+ L R + + Sbjct: 61 DGLEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLR 120 Query: 120 MQKSKDEN 127 +S++E+ Sbjct: 121 RTESREED 128 >gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D + +V + GF V A + + K +PN +++D + Sbjct: 1 MK-ILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMF-KNEMPNLVILDIMLPKKD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ +++ + L + + + G GA+ +++KPF+ + L ++ + Sbjct: 59 GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115 Query: 119 QMQKSK 124 + + + Sbjct: 116 RRTQGE 121 >gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina baltica OS145] gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina baltica OS145] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA E P+ +++D + G Sbjct: 3 RRILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKI-AEPYPDMVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ ++ + L + E + G GA+ ++ KPF+ + L MR + + Sbjct: 62 IQLAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVFR 121 Query: 120 MQKSKDENQFLD 131 ++ L+ Sbjct: 122 RVAPTVLDEPLE 133 >gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 233 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + R GF + + A E +++ P+ +++D + G+ Sbjct: 2 NILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQ-RPDVIILDLMLPGLDGL 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +RQ P D ++ L + + I G GA+ +++KPF+ L +R L + Sbjct: 61 EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120 >gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ + A EA + + +P+ +++D + G Sbjct: 3 KRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ R+ L +V + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RAREDDED 129 >gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 239 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLDA 132 K + E Q +A Sbjct: 120 RTKLQQEEQVSEA 132 >gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. 217] gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. 217] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ R+V + GF V A++ EA E+ P+ +V+D M + Sbjct: 7 TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEAL-LMVSEMPPDIIVLDWMMPNVSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125 Query: 121 QKSKDENQFLD 131 + + L+ Sbjct: 126 TRPATVGERLE 136 >gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293] gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293] Length = 218 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + Sbjct: 118 KQEQQEEFQ 126 >gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6] gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] Length = 251 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 18 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 77 GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 135 Query: 121 QK 122 + Sbjct: 136 SQ 137 >gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 242 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF V A E + ++++P+ ++ D M Sbjct: 16 RILLVDDEPGIRTAVQAYLEDEGFAVTTAIDGEEGWQKA-QQIVPDVVISDVMMPRCDGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G +AG + ++ KPF+ + L +R + + Sbjct: 75 GLLKRLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELIARVRNVVKR 134 Query: 121 QK 122 Q+ Sbjct: 135 QE 136 >gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V A+ +A E + +++++D + + Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKP-FDFIILDVMLPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + L + D I G GA+ +L KPF+ + M+ + + Sbjct: 60 GIEITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QKSKDENQ 128 + + + + Sbjct: 120 LEPRQQTR 127 >gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R++ R+ GF V +A + EA KE P+ +++D + G + Sbjct: 6 TILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQI-KEAPPDLILLDWMLPGVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + V L D + G GA+ ++ KP++ L ++ + Sbjct: 65 EICRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRR 124 Query: 121 QKSKDENQFLD 131 + + L+ Sbjct: 125 TRPAAVGERLE 135 >gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440] Length = 242 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 17 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 75 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 76 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 135 Query: 120 M 120 Sbjct: 136 R 136 >gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198] gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A F + P+ +++D + G Sbjct: 3 RRILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLI-DPYPDLVLLDWMIPGGSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +++ D+ + L + + E + G GA+ +++KPF+ + L ++ + + Sbjct: 62 LQIIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAILR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. TM1035] gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. TM1035] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ R+V + GF V A++ EA E+ P+ +V+D M + Sbjct: 7 TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEAL-LMVAEMPPDIIVLDWMMPNVSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125 Query: 121 QKSKDENQFLD 131 + + L+ Sbjct: 126 TRPATVGERLE 136 >gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] Length = 256 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 7/123 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L+V+ +R+V + + V+ A + E + P+ +++D M Sbjct: 20 MKRRVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTH-QPDLIILDLMMPKK 78 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +RQ ++V + L + + I G GA+ ++ KPF+ L ++ + Sbjct: 79 DGWELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQII 135 Query: 118 PQM 120 + Sbjct: 136 LRR 138 >gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 237 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + E E +P+ +++D + Sbjct: 3 KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-ETMPDLILLDIMLPLKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKSKDEN 127 Sbjct: 119 RHAQTATQ 126 >gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 243 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R GF V A A + +V+D M G Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGK-ALNRLLLRETVDLIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128 Query: 123 SKD 125 +++ Sbjct: 129 AQE 131 >gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella tarda EIB202] gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella tarda EIB202] gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda FL6-60] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R + + G+ EA S A E P+ +++D + G Sbjct: 4 RILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLC-EPYPDLILLDWMLPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ P ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 QLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 121 QKSKDENQFLD 131 + ++ Sbjct: 123 ISPMALEETIN 133 >gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 244 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + ++ G A S EA +++LP+ L+ID + G+ Sbjct: 6 NILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEAL-RVIRDVLPDVLLIDWMLPGMSGV 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L + + G AGA+ ++ KPF+ + L +R + + Sbjct: 65 ALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124 Query: 121 QKSK 124 + + Sbjct: 125 RAPQ 128 >gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R G+ V A E E ++ P+ +++D M + Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKF-NQVKPDMVLLDVMMPKMDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 64 EVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120 >gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R+ GF V EA S EA + E + +++D + G+ Sbjct: 1 MKRVLIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLPGID 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + V L + + G GA+ +++KPF+ L + + + Sbjct: 61 GYKVLKKTRENNSSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAILRR 120 Query: 121 QKS 123 + Sbjct: 121 INN 123 >gi|153870385|ref|ZP_01999797.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152073147|gb|EDN70201.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 855 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 2/131 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + V + + + +A S EA E+ L+P+ +++D M + Sbjct: 562 KILIVDDEAVNLHVLANHLSLNHYATIQAASGREALSILEEGLIPDLILLDVMMPHMTGY 621 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ ++ + L + ++ G GAN +L+KP ++ L ++ + Sbjct: 622 EVTQKIREHWEANELPIVLLTAKNQVSDLVMGLEVGANDYLIKPISKNELLARIKTHLHI 681 Query: 121 QKSKDENQFLD 131 ++ + E L Sbjct: 682 KQLRAETLRLA 692 >gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 242 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E K P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAE-PDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33] gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7] gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407] gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3] gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 98HAH33] gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407] gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7] gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein, C-terminal [Streptococcus suis GZ1] gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14] gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE-FPDIVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-RTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKDENQFLDA 132 + + +++ Sbjct: 119 SELAETQTNIES 130 >gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 248 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD +R + R GF V EAT+ EA E + +++D + + Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMA-ANHHFDIILLDLMLPDMDGWQ 74 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V + L + + + G GA+ +L KPF E L + L + Sbjct: 75 VCKKIREKD---HVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRS 131 Query: 122 KSKDENQFLDA 132 + +A Sbjct: 132 AITQSIRRQEA 142 >gi|323492021|ref|ZP_08097186.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio brasiliensis LMG 20546] gi|323313750|gb|EGA66849.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio brasiliensis LMG 20546] Length = 1128 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + +V G+ V A EA E EKE P L++D M G+ Sbjct: 724 LLVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALEAVEKEK-PELLLLDIMMPGMSGYQ 782 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + V L + I G AGAN +L KPFN++ L + + + Sbjct: 783 VCETLRKSYDHAALPVIMLTALNQTDDRIRGFNAGANDYLSKPFNKQELAARI--IAHLT 840 Query: 122 KSKDENQFLD 131 SK E + L+ Sbjct: 841 ASKAEQRRLE 850 >gi|242240331|ref|YP_002988512.1| two component transcriptional regulator PhoB, winged helix family [Dickeya dadantii Ech703] gi|242132388|gb|ACS86690.1| two component transcriptional regulator PhoB, winged helix family [Dickeya dadantii Ech703] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDVAVSRL-AEPYPELVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 LQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RISPMAVEEVIE 133 >gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51] gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ I++++ + G+ V A A + +KE P+ +++D + Sbjct: 5 MVKILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEK-PDLVLLDVMLPELD 63 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + + L + + G GA+ ++ KPF+ L ++ Sbjct: 64 GLEVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARL 123 Query: 119 QMQK 122 + +K Sbjct: 124 REEK 127 >gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 228 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 4/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + V G+ V A+S EA E P+ ++ D M + Sbjct: 1 MQKILVVDDELDCQAVLAIYLESRGYQVECASSGLEALSIFESNP-PDLVISDVMMPHMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R LG V +L + + E + G G + +L+KPF + + ++ Sbjct: 60 GFEFCRRLRSSRLGQLVPFIFLSGQGELESKVEGHSIGGDDYLVKPFQPKEILAKVKGQL 119 Query: 119 QM-QKSKDENQFL 130 + + E L Sbjct: 120 ERSHRIHAEIVRL 132 >gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 234 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+++ + ++ R+ G+ V + + E + +E P+ +++D + L Sbjct: 4 RVLVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEK-PDLVILDLMLPDVDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ ++ + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 EICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122 Query: 121 QKSKDENQ 128 + +E + Sbjct: 123 TQQPEEEK 130 >gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces roseosporus NRRL 11379] Length = 246 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ R G+ A +A E P+ +V+D M + Sbjct: 9 QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEA-YAPDLIVLDIQMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ + L + G AGA+ +L+KPF + L +R L + Sbjct: 68 LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 >gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 239 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + G+ V +A EA + E + + ++D + G+ Sbjct: 4 KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDV-DMFIVDIMLPGIDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + + V +L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 FELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFR 122 Query: 120 MQKSKDENQ 128 + +++ Sbjct: 123 RLSAATQSK 131 >gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + G+ V A E + E P+ +++D M + Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEK-PDLVLLDVMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F L V + L + E + G AGA+ +L+KPF+ + L +R + + Sbjct: 60 GFALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRR 119 Query: 121 QKSKDE 126 + + Sbjct: 120 HQREKR 125 >gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806] Length = 246 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E P+ +V+D M Sbjct: 11 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAE-PDLVVLDVMMPKLDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 Query: 121 QK 122 + Sbjct: 127 VE 128 >gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family [Spirochaeta thermophila DSM 6578] Length = 226 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + ++ R G+ V +A E + LLP+ +++D + G+ L Sbjct: 2 TILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKA-RNLLPDAIILDLMLPGMSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + + + L + + ++ G GA+ ++ KPF+ L ++ + + Sbjct: 61 EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120 >gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] Length = 235 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+ + + G+ V A+ EA + K + +++D M G Sbjct: 2 MAHILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLF-KNNPFDLVLLDIMMPGKS 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R D+ + L + + + G + GA+ ++ KPF L + + Sbjct: 61 GYDVCREIRSTDE--DIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVL 118 Query: 119 QMQKSKDEN 127 + + E Sbjct: 119 RRARRNHEE 127 >gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13] Length = 227 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M + +L+VD +R++ + V A + EA + + + +++D M Sbjct: 1 MKNAFCVLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEV-DLIILDVMMP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + F A + + + L + D + G + GA+ +++KPF+ + L + L Sbjct: 60 DMDGFTACKKIREKYM-MPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEAL 118 Query: 118 PQMQKS 123 + Sbjct: 119 LRRSNQ 124 >gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + + ++ G+ V A EA +E LP+ +V+D + + Sbjct: 5 RILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQV-QERLPDLIVLDWMLPKVSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P +V + L + I G GA+ +++KPF L +R + + Sbjct: 64 EVCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRR 123 Query: 121 QK 122 + Sbjct: 124 LR 125 >gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis HI4320] gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis HI4320] Length = 229 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A F + P+ +++D + G Sbjct: 3 RRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLI-DPYPDLVLLDWMIPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +++ D+ + L + + E + G GA+ +++KPF+ + L ++ + + Sbjct: 62 IQVIKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + A EA E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFE-EDKPDLVILDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1] gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1] gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 239 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLDA 132 K + E Q ++ Sbjct: 120 RTKLQQEEQVTES 132 >gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ EA EA + P+ +++D + + Sbjct: 3 KKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQS-PDLILLDIMLPKMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R++ + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 62 FTVC-RKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRR 119 >gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 237 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 6 RILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEV-YAPDLIVLDIQMPRMDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ V + L + G AGA+ +L+KPF + L +R L + Sbjct: 65 TAARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 122 >gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 248 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + GF V A + +A + E P+ +++D + + Sbjct: 1 MK-ILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEH-PDLIILDLMLPDMS 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + + + +++G GA+ ++ KPF+ + L ++ + Sbjct: 59 GFDICRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNIL 118 Query: 119 QMQKSKD 125 + + Sbjct: 119 RRAQEAK 125 >gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB [Pelagibaca bermudensis HTCC2601] gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. HTCC2601] Length = 229 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V R+ GF V A + EA ++E P+ +V+D + + Sbjct: 7 TVLVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEE-PDVIVLDWMLPNLSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P V V L + + G GA+ +++KP++ L ++ + Sbjct: 66 EVCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 ARPAAAGLRLE 136 >gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 241 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 2/128 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R G++V A E EK + +V+D + + Sbjct: 6 KRILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHS-FDLIVLDLMLPKLSG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + V + L + + E I G GA+ +++KPF+ L +R L + Sbjct: 65 -ERVCRAVRETSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRA 123 Query: 122 KSKDENQF 129 ++ E Q Sbjct: 124 HAEAEPQL 131 >gi|22297889|ref|NP_681136.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294067|dbj|BAC07898.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 121 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ S R++ L GF V AT EA E ++ P+ +V+D M + Sbjct: 1 MTKVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQST-PDVVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P + V + + G + GA++++ KPF+ + L +++L Sbjct: 60 GYEVCRQIKSDPRTQSIPVVMCSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] Length = 1603 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD I ++V + + + + A + +A + + +++D M + E Sbjct: 1193 ILVVDDEPINQQVLKSHLSALKYDITSALNGEDALKALSNGKHFDLVLLDVMMPRMSGYE 1252 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ L +++ V + + + ++ G GAN ++ KPF ++ ++ + Sbjct: 1253 VCEQIRKKFLPSELPVIMITAKNQVQDLVHGLNTGANDYITKPFTKDEFLARVKTHLNLH 1312 Query: 122 KSKD 125 + Sbjct: 1313 QIHA 1316 >gi|327395749|dbj|BAK13171.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355] Length = 249 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A+ +A + + L++D M Sbjct: 18 MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL--DNSIDLLLLDVMMPKKN 75 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 76 GIDTLKELRQQ---YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 132 Query: 119 QMQKSKDENQF 129 + ++ Q Sbjct: 133 RRSNWSEQQQQ 143 >gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 239 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLDA 132 K + E Q +A Sbjct: 120 RTKLQQEEQVKEA 132 >gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 253 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A+ EA E C +E P+ +V+D M Sbjct: 15 TILVVDDEASIRRILETRLSMIGYQVVTASDGMEALE-CFRESHPDLVVLDVMMPKLDGY 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 74 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130 Query: 121 QKSKD 125 + + Sbjct: 131 VEKEQ 135 >gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 239 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLDA 132 K + E Q ++ Sbjct: 120 RTKLQQEEQVSES 132 >gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] Length = 229 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ + A EA + + +P+ +++D + G Sbjct: 3 KRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ R+ L +V + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RAREDDED 129 >gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina] gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina] Length = 248 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA +KE PN +V+D + Sbjct: 11 KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKEN-PNLIVLDIMIPKLDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 GVCQEIRKE---SDVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRR 126 Query: 121 QK 122 + Sbjct: 127 VE 128 >gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis] Length = 283 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ ++ G+ VF A EA E E E+ P+ +++D + + Sbjct: 51 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVE-EVEPDLIILDLMLPKMDG 109 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 110 LEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 167 >gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 242 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A A +++ P+ +V+D + + F Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLA-RDVEPDLVVLDVMLPDMDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V +L D + G G + ++ KPF+ E + +R + + Sbjct: 70 TVTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTS 129 Query: 123 S 123 + Sbjct: 130 A 130 >gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 243 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A EA E + P+ +V+D M Sbjct: 7 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETF-RLTEPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima] Length = 239 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + G+ V +A EA + E + + ++D + G+ Sbjct: 4 KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDV-DMFIVDIMLPGIDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R M + V +L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 FELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas albilineans GPE PC73] gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas albilineans] Length = 229 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F A EA + + +P+ +++D + G Sbjct: 3 KRILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREA-QSLIADRVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE R+ + +V + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RTREDDED 129 >gi|153875667|ref|ZP_02003366.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152067869|gb|EDN66634.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 365 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+VD K+ ++ F V A +A E P+ +++D M G+ F Sbjct: 9 LLIVDDIPTNLKLLMNVLRHLDFTVQVAQDGEDALEQVAYAK-PDLILLDVMMPGMDGFE 67 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ V ++ + + G GA ++ KP E + + +++ Sbjct: 68 TCRRLKADEKTHDIPVIFMTALTETVDKVKGFEIGAVDYITKPVQPEEVLARVNTHLKLR 127 Query: 122 KSKDENQF 129 K + + Sbjct: 128 KQQKRLEQ 135 >gi|119484444|ref|ZP_01619061.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119457918|gb|EAW39041.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 437 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD S + KV + G+ V A + A + + P+ +++D M G+ F Sbjct: 11 ILIVDDSPVHLKVLSESLVNAGYEVAVAINGETALKQALYDP-PDLILLDIQMPGMDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 ++ P V + ++ D I G +AGA +L KPF +E + ++ Q+ Sbjct: 70 TCHQLKAHPSTQAVPIIFMTALADTSSKIKGLKAGAVDYLTKPFQQEEVLARIKVHLQIK 129 Query: 121 ---QKSKDENQFLDAI 133 Q ++N LD + Sbjct: 130 DLTQSLLEKNLLLDQL 145 >gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185] gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185] Length = 218 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] Length = 234 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE-FPDIVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-RTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKDENQFLDA 132 + + +++ Sbjct: 119 SELAETQTNIES 130 >gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 239 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + R D G+ V A S E+E + LV+D + GV Sbjct: 4 KRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V + + + I G GA+ +L KPF+ L +R L + Sbjct: 64 LQVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRA 123 Query: 122 KSKDENQFLDA 132 ++ ++ +DA Sbjct: 124 EAMAQSARIDA 134 >gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina loihiensis L2TR] gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina loihiensis L2TR] Length = 228 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A + E P+ +++D + G Sbjct: 3 RRILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKI-AEPYPDMVLLDWMLPGGSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ ++ + L + E + G GA+ ++ KPF+ + L MR + + Sbjct: 62 LQLAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVFR 121 Query: 120 MQKSKDENQFLD 131 ++ L+ Sbjct: 122 RVAPTVLDEPLE 133 >gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 226 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LLLVD VR+ D GF V + A E+ E +P+ ++ D M + Sbjct: 4 KLLLVDDEPGVREAVSAYLEDSGFEVTAVANAQAALEYLETH-VPDVIITDIMMPQMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F+ VRQ P + + V +L I G AG +++L KPF+ + L ++ L + Sbjct: 63 AFLETVRQQPHLSHIPVIFLTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAIIKNLLRR 122 Query: 121 QKSKD 125 Q + Sbjct: 123 QAAAR 127 >gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 275 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-VLE 61 +L+VD V +V G+ V A A E L P+ +V+D + G + Sbjct: 44 RVLVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAA-LRPDLVVLDLMLPGGMDG 102 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R G V V L D + I G GA+ ++ KPF+ L + + + Sbjct: 103 FEVCRRIRARGP-VPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRRW 161 Query: 122 KSKD 125 + + Sbjct: 162 RRTE 165 >gi|291287962|ref|YP_003504778.1| multi-sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885122|gb|ADD68822.1| multi-sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 537 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD S +V L F + A A + P+ +++D M G+ Sbjct: 8 SILIVDDSPENIRVLADLLGS-DFDIKIAKDGATALKILASPPYPDLILLDIMMPGMDGY 66 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ ++ V ++ + E ++ G G ++ KPFN + L ++ ++ Sbjct: 67 EVCREIKKSFNTRNIPVIFITAKSLTEDIVLGFELGGVDYITKPFNEKELMARIQTHLEL 126 Query: 121 QKSKDENQFL 130 + +E + L Sbjct: 127 KSINEELETL 136 >gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 244 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + R GF V A EA E E +P+ +++D + + Sbjct: 8 RSILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTE-MPDLVLLDVMLPDLDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + ++ V L + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 67 F-EVLKLIRESSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRV 125 Query: 122 KS 123 ++ Sbjct: 126 EA 127 >gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + ++ R G+ V +A E + LLP+ +++D + G+ L Sbjct: 2 TILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKA-RNLLPDAIILDLMLPGMSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + + + L + + ++ G GA+ ++ KPF+ L ++ + + Sbjct: 61 EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120 Query: 121 QK 122 + Sbjct: 121 TR 122 >gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLDA 132 K + E Q +A Sbjct: 120 RTKLQQEEQVAEA 132 >gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella avium 197N] gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella avium 197N] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ ++++ + G V A +A+ E LP+ +++D + G+ Sbjct: 4 TILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAE-LPDLILLDWMLPGMSGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +V V L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 SLARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + + +D Sbjct: 123 RAPQLTDDIID 133 >gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++LLV+ ++++ G V A++ A K LP+ +++D + G + Sbjct: 4 NILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAAL-MLVKNALPDLVLLDWMLPGGSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V + L D + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 DIAKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLDA 132 K + E Q +A Sbjct: 120 RTKLQQEEQVAEA 132 >gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + L G+ + +A S+ +AR + P+ +++D + Sbjct: 1 MSRILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLMLPDGD 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ G + + L + + + G GA+ +L KPF L +R + Sbjct: 61 GFELCRQIRQ--GGQYLPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAIL 118 Query: 119 QMQKSKDE 126 ++ + + E Sbjct: 119 RLAQHQRE 126 >gi|310825369|ref|YP_003957727.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398441|gb|ADO75900.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1002 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL D + +R R L F V EA E LP+ ++ D M G+ F Sbjct: 634 ILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEA-RLPDLVLSDVMMPGMDGFA 691 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + R P V L E + G +AGA+ +L+KPF+ L + + ++ Sbjct: 692 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRLA 751 Query: 122 KSKDENQFLD 131 + + + + L Sbjct: 752 RERAKRERLA 761 >gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 KSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALII-DRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 235 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R + R GF V EA EA E E P+ +++D + G+ Sbjct: 2 RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTE-RPDLVLLDIMLPGIDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV V L D ++G AGA+ +L+KPF E L +R + + Sbjct: 61 AVCRILRRE---SDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117 >gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +++++ +R++ + G+ V+ A + E ++ P+ +++D M Sbjct: 3 KRIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVF-QQYQPDLIILDLMMPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++V + L + I G GA+ ++ KPF+ L ++ + + Sbjct: 62 WELCEEIRQ---YSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + R + EA + +A E P+ +++D M G Sbjct: 4 RKILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEK-PDLILLDWMMPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ + ++ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 252 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E +E + +V+D M Sbjct: 13 TILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPT-DLVVLDVMMPKLDGY 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 72 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 128 Query: 121 QKSK 124 + + Sbjct: 129 VEKE 132 >gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1135 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD + +V + + + + +A + +A + P+ +++D M Sbjct: 726 MKAFKILIVDDEPVNLQVLVNHLSLHNYKITQAVNGLDAFTKIRQGYRPDLILLDIMMPK 785 Query: 59 V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + EF +R L ++ V L + ++AG AGAN +L KP ++ L ++ Sbjct: 786 MTGYEFCKKIRNKYLPNELPVVLLTAKNQISDLVAGFAAGANDYLTKPISKNELLARIKT 845 Query: 117 LPQMQK 122 Q+ K Sbjct: 846 HLQLAK 851 >gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 56/126 (44%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D + +V + GF V + + K +P+ +++D + Sbjct: 1 MK-ILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVF-KNEMPDLVILDIMLPKKD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ +++ + L + + + G GA+ +++KPF+ + L ++ + Sbjct: 59 GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115 Query: 119 QMQKSK 124 + + + Sbjct: 116 RRTQGE 121 >gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + ++ R G+ V A E +E P+ +++D + Sbjct: 1 MMKILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREK-PDLVILDLMLPMLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + + L E IAG +GA+ +L+KPF+ + ++ + Sbjct: 60 GMEVCRRIR---TWANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAIL 116 Query: 119 QMQKS 123 + Sbjct: 117 RRAGL 121 >gi|294635418|ref|ZP_06713908.1| phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda ATCC 23685] gi|291091207|gb|EFE23768.1| phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda ATCC 23685] Length = 237 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA S A E P+ +++D + G Sbjct: 11 RRILVVEDETPIREMVSFVLEQNGYQPLEAESYDGALSRLC-EPYPDLILLDWMLPGGSG 69 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ P D+ V L + E + G GA+ +++KPF+ + L ++ + + Sbjct: 70 IQLIKHLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYIIKPFSPKELVARIKAVMR 129 Query: 120 M 120 Sbjct: 130 R 130 >gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + G+ V +A EA + E + + ++D + G+ Sbjct: 4 KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDV-DMFIVDIMLPGIDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + + V +L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 FELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB [Alteromonadales bacterium TW-7] gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB [Alteromonadales bacterium TW-7] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + GF EA A E P+ +++D + G Sbjct: 3 RKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMV-EPYPDMVLLDWMLPGGSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +Q + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQIAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RVSPTSLEEAIE 133 >gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R GF V EA S + + +E P+ +++D M + Sbjct: 7 RRILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMV-REQHPDLMILDVMMPEMDG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + V L + ++ G +GA+ +L KPFN + L +R L + Sbjct: 66 WEVCRRLRE---FSQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59 M +L+V+ ++R G+ V + + EA + E+ + V+D M G+ Sbjct: 1 MKRILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGM 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F R + + + L + + G GA+ ++ KPF+ L + L + Sbjct: 61 DGFEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALHR 120 Query: 120 MQKSKDE 126 E Sbjct: 121 RVTVAAE 127 >gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB [Magnetospirillum gryphiswaldense MSR-1] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R+ G+ V EA EA E P+ +V+D + +E Sbjct: 7 ILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLV-SERKPDLMVLDWMLPSLSGIE 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ P ++ + L + I G GA+ ++ KPF+ L +R + + Sbjct: 66 VCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAMLRRV 125 Query: 122 KSKDENQFLD 131 + + L+ Sbjct: 126 QPVPQKGMLE 135 >gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 235 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA + E E+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVE-EVSPDLIILDLMLPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-REVRKTHDMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 118 Query: 121 QKS 123 Q + Sbjct: 119 QAA 121 >gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] Length = 244 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ LV+D M + Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAA-YRPDLLVLDIQMPRMDG 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + L + G AGA+ +L+KPF + L +R L + Sbjct: 70 LTAARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128 >gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 4/133 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M ++L+VD + ++ GF V A EA E P+ L++D + G Sbjct: 1 MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKL-AEQAPDLLLLDWMLPGT 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +RQ + + L + + + I G GA+ ++ KPF+ L ++ L Sbjct: 60 SGIELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKAL 119 Query: 118 PQMQKSKDENQFL 130 + + Q L Sbjct: 120 LRRRAPDRLEQQL 132 >gi|17229772|ref|NP_486320.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131371|dbj|BAB73979.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 421 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D I++ + + + G+ V AT+ + E +K P ++ D M+ + Sbjct: 37 KILVIDDDRIIQLILKQALQEQGYEVILATNGLQGIEQADKHH-PALIICDWQMDEMDGL 95 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + F L E + G GA+ FL KP + L+ +R ++ Sbjct: 96 EVCRKIKSEPTLSTTFFILLTSRRAVEDRVEGLDTGADDFLSKPIDVNELKARVRSGLRL 155 Query: 121 QKSKDENQF 129 ++ E Q Sbjct: 156 YQTNQELQR 164 >gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V R+ GF V A + EA E P+ +V+D + + Sbjct: 7 TVLVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEAL-MMMDEESPDVIVLDWMLPNLSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P V V L + I G GA+ +++KP++ L +R + Sbjct: 66 EVCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 ARPAAAGLRLE 136 >gi|186686849|ref|YP_001870042.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186469201|gb|ACC85001.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 448 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + +V + ++ G+ V A S A + + P+ +++D M G+ F Sbjct: 11 TILVVDDNPTNIQVLFDVLSEIGYRVAIAKSGEAALQRVQS-YHPDIILLDVMMPGIDGF 69 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V ++ D + G GA ++ KP E +R Q+ Sbjct: 70 ETCQRLKADCATCDIPVIFMTALSDTVDKVKGLSLGAVDYITKPIQHEEALARIRVHLQL 129 Query: 121 QKSKDENQF 129 ++S+ +Q Sbjct: 130 RESQKSSQQ 138 >gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] Length = 1127 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 LL+ D + +V G+ V A E + E+E P +++D M G+ E Sbjct: 722 LLVADDEPVNLQVLSSFLKLEGYRVKTANDGPETLKQLEEET-PELVLLDVMMPGMSGYE 780 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+ + + + L + + G +GAN +L KPFN++ L ++ Q Sbjct: 781 VCQEVRKQYSHSQLPIIMLTALNQTQDRVRGFESGANDYLSKPFNKQELAARIKAHLQAS 840 Query: 122 KSK---DENQFLD 131 +++ EN L Sbjct: 841 QAEIRLTENDRLQ 853 >gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84] gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE-FPDIVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-RTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKDENQFLDA 132 + + +++ Sbjct: 119 SELPETQTNIES 130 >gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 238 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +R++ + G+ + EA A E +++D + G+ Sbjct: 6 NRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDY-GLVILDVMLPGMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ+ + L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 65 VEVCTRLRQV---KSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILR 121 Query: 120 MQKSKD 125 + Sbjct: 122 RSSATA 127 >gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1403 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + +R + L + + V A P+ ++ D M G+ F Sbjct: 629 RILIADDNADMRDYLKRLLSQQ-YEVEAVVDGLTAL-KAIHSCHPDLVLTDVMMPGLDGF 686 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + L E + G AGA+ +L+KPF+ L + ++ Sbjct: 687 ELLKSLRADLSTQHIPIILLSARAGEESRVEGLEAGADDYLIKPFSARELLARVEATLKL 746 Query: 121 QKSKDENQFLD 131 + E + Sbjct: 747 SYLRQEATRRE 757 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 6/116 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD R G V S EA + + PN +V D M + Sbjct: 1279 ILVVDDDEDTRYFLAFALQQSGATVTTVGSASEALQVLVRS-APNVIVSDVGMPDMDGYM 1337 Query: 62 FIAHVRQMPLGT---DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 I +R + + L R G ++KP N L + Sbjct: 1338 LIQQIRMLEAQQGREKIKAIALTAYAGEIDRQQALREGFQRHIIKPINPSVLIKTI 1393 >gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + R D G+ V A S E+E + LV+D + GV Sbjct: 4 KRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V + + + I G GA+ +L KPF+ L +R L + Sbjct: 64 LQVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRA 123 Query: 122 KSKDENQFLDA 132 ++ ++ +DA Sbjct: 124 EAMAQSARIDA 134 >gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] Length = 224 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD +R++ R + GF V+EA EA E + +ID M + Sbjct: 1 MNKILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKA-DLAIIDLMMPNMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R D+ V L + + + I G +AGA+ +L+KPF L ++ L Sbjct: 60 GFELCQELRAS---YDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALL 116 Query: 119 QMQK 122 + + Sbjct: 117 KRYQ 120 >gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + R G V AT+ EA E +E +P+ +++D M + Sbjct: 7 KLVLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKV-REEMPDIVLLDIMMPVMDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +R++ + V V L + + E + G GA+ ++ KPF++ L +R + + Sbjct: 66 F-EALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRRH 124 Query: 122 KSK 124 ++ Sbjct: 125 YTQ 127 >gi|220906227|ref|YP_002481538.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219862838|gb|ACL43177.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 566 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + +V ++ GF V A A + + P+ +++D M G+ F Sbjct: 10 TILVVDDTPTNLEVLFDFLSNAGFKVLFAEDGESALQKANY-ITPDLILLDILMPGMDGF 68 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V +L D + G GA F+ KP E + + ++ Sbjct: 69 ETCQRLKQNGSTRSIPVIFLTALTDTVDKVKGFALGAVDFITKPLQYEEVLARVETHLRL 128 Query: 121 Q----KSKDENQFLD 131 Q K +++NQ L+ Sbjct: 129 QTLTRKLQEQNQRLE 143 >gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + + G+ A + +A + +++ PN +++D + G+ Sbjct: 5 KILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDT-PNLILLDIMLPGMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 64 DVCKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRR 123 Query: 121 QKSKD 125 +K Sbjct: 124 TTAKS 128 >gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] Length = 243 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L+VD + + + G+ V A A + K+ P+ +++D + G+ Sbjct: 1 MQGTILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQ-QPDLILLDLMLPGM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 VR L + L + + G GA+ ++ KPF+ L ++ Sbjct: 60 DGMDVCREVRGHQL--QTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQ 117 Query: 118 PQMQK 122 + Q+ Sbjct: 118 MRRQQ 122 >gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12] gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12] gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 244 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V+ A EA E E+ P+ +++D + + Sbjct: 11 MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKV-AEVEPDLILLDLMLPKMD 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 70 GLEVA-REVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 128 >gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 245 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+V+ + ++ R F +E +P+ +V+D + Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIF-QEQVPDLIVLDLMLPKLD 69 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ P D ++ L + + I G GA+ +L+KPF+ L +R L Sbjct: 70 GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALL 129 Query: 119 QMQKSKDE 126 + Q + + Sbjct: 130 RRQLRQGQ 137 >gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 236 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R + V EA E K + +++D + V Sbjct: 6 RRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHH-FDLVILDLMLPRVPG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 65 ERVCRAIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 121 Query: 120 MQKSKDENQF 129 S E Q Sbjct: 122 RVHSDVEPQR 131 >gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 249 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MHRILLIDDDPAISELVSINLEMAGYEVHQAPDGIKG-QALALQLQPDLIMLDLMLPRVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ TD+ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLDA 132 K + E Q ++ Sbjct: 120 RTKLQQEEQVSES 132 >gi|322834089|ref|YP_004214116.1| two component transcriptional regulator PhoB, winged helix family [Rahnella sp. Y9602] gi|321169290|gb|ADW74989.1| two component transcriptional regulator PhoB, winged helix family [Rahnella sp. Y9602] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + G+ EA A E P +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGYQAVEAEDFDSAIGQLV-EPYPELILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ L ++ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121 Query: 120 MQKSKDENQFLD 131 + +D Sbjct: 122 RISPMAVEEVID 133 >gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602] gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A E + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALEKI--DNTIDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIETLKELRQR---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAML 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRSNWSEQQQ 125 >gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + ++ + + + A + EA KE P+ +++D + G+ Sbjct: 3 MEKILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + + + + G GA+ ++ KPF+ + ++ + Sbjct: 62 GYEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121 Query: 119 QMQ 121 + + Sbjct: 122 RRR 124 >gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] Length = 1130 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 LL+VD + ++ + G+ V A S +A E + P +++D M + E Sbjct: 723 LLVVDDEPVNLQILNNFLRLEGYRVLTAESGKQALELVQSHK-PALILLDIMMPEMSGYE 781 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +RQ ++ + L + + G GAN +L KPFN+E L ++ Q Sbjct: 782 VCSQLRQQYTPLELPIMMLSALGQVKDRVKGFECGANDYLTKPFNKEELTARIKAHLQAG 841 Query: 122 KS---KDENQFLD 131 K+ +++N+ L Sbjct: 842 KTEFEREKNRQLA 854 >gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15] gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15] Length = 244 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V+ A EA E E+ P+ +++D + + Sbjct: 11 MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKV-AEVEPDLILLDLMLPKMD 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 70 GLEVA-REVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 128 >gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 60/133 (45%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---V 59 ++L+V+ +R++ GF +A V EA P +++D + G Sbjct: 5 TILVVEDEPAIREMIVTTLEMAGFECLQAEDVSEAHSQVVDH-RPAMILLDWMLPGNQSG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +++ L +++ + L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 64 IDLCRRLKKDELLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLR 123 Query: 120 MQKSKDENQFLDA 132 + ++ ++A Sbjct: 124 RSSALSGDKPIEA 136 >gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa SC2] Length = 243 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L+VD + + + G+ V A A + K+ P+ +++D + G+ Sbjct: 1 MQGTILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQ-QPDLILLDLMLPGM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 VR L + L + + G GA+ ++ KPF+ L ++ Sbjct: 60 DGMDVCREVRGHQL--QTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQ 117 Query: 118 PQMQK 122 + Q+ Sbjct: 118 MRRQQ 122 >gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAVIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato Max13] gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato K40] gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|78101053|pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain gi|78101054|pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain gi|78101055|pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain Length = 125 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284] gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 233 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + + G+ V A EA E E E P+ +++D + + Sbjct: 1 MPKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEE-PDLILLDLMLPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ ++ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-RQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRR 118 Query: 121 QKSKDE 126 Q + Sbjct: 119 QDQFQQ 124 >gi|300865377|ref|ZP_07110187.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300336628|emb|CBN55337.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 424 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D V+ V + L G V A + P+ ++ D M Sbjct: 1 MAKILVIDDDVTVQIVLQDLLESEGHEVAIAFDGQDGLSQA-HHRPPDLIICDWMMPYID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ P VF L + + + G GA+ FL KP E L +R Sbjct: 60 GLEVCRQLKANPELATVFFILLTAREELDDRVKGLDNGADDFLSKPIETEELLARVRAGL 119 Query: 119 QMQKSKDENQF 129 +++ + + Sbjct: 120 RLRGLTQQLER 130 >gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio shilonii AK1] gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio shilonii AK1] Length = 1128 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+ D + ++ G+ V A E + E E P+ L++D M G+ F Sbjct: 724 LLVADDEPVNLRILESFLRLEGYQVKLAKDGLETLDIIEHEK-PDLLLLDIMMPGMSGFE 782 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + L E + G GAN +L KPF++ L + Q Sbjct: 783 VCETIREQYDHAALPIIMLTALNQSEDRVRGFELGANDYLAKPFSKPELAARIAAHLQAS 842 Query: 122 KSKD---ENQFLD 131 K+++ ENQ L Sbjct: 843 KAEERRAENQLLK 855 >gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 256 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 23 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 81 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 82 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 138 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 139 RRNQATAQ 146 >gi|115376893|ref|ZP_01464114.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115366072|gb|EAU65086.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 986 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL D + +R R L F V EA E LP+ ++ D M G+ F Sbjct: 618 ILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEA-RLPDLVLSDVMMPGMDGFA 675 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + R P V L E + G +AGA+ +L+KPF+ L + + ++ Sbjct: 676 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRLA 735 Query: 122 KSKDENQFLD 131 + + + + L Sbjct: 736 RERAKRERLA 745 >gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + E E++P+ +++D + Sbjct: 3 KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-EVMPDLILLDIMLPQKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L +R + Sbjct: 62 MEVCREVRKK---YDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLR 118 Query: 120 MQ 121 Sbjct: 119 RH 120 >gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 228 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R++ F G+ V A +A + +P+ +++D + + Sbjct: 4 RILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTA-VPDLIILDLMLPKMDGW 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V V L D +AG AGA+ ++ KPF+ L +R + Sbjct: 63 EVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRR 122 Query: 121 QKS 123 S Sbjct: 123 SDS 125 >gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] Length = 240 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + ++ GF V A + EA E E E P+ +V+D M G+ F Sbjct: 12 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENE-QPDLIVLDVMMPGMDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L + E +AG AG + ++ KPF+ + + +R + + + Sbjct: 71 EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 130 Query: 123 SKDEN 127 + E Sbjct: 131 NAQEE 135 >gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ + G+ A +A E P +V+D M + Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGT-YDPELIVLDVLMPRMDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G V V L + G AGA+ +L+KPF + L +R L + Sbjct: 71 TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRR 128 >gi|262275912|ref|ZP_06053721.1| putative DNA-binding response regulator [Grimontia hollisae CIP 101886] gi|262219720|gb|EEY71036.1| putative DNA-binding response regulator [Grimontia hollisae CIP 101886] Length = 240 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + + G+ V A + E + + P+ +++D + G Sbjct: 5 KRILVVDDDLEIRELLQEYLSKAGYNVTTAQNGQEMKAKLAVQ-YPDLILLDIMLPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +VRQ V + L D I G GA+ ++ KPF+ L +R L + Sbjct: 64 FTLCKYVRQDSS---VPIIMLTAVSDETDQIIGLELGADDYIAKPFSPRQLVARIRALLR 120 Query: 120 MQKSKDE 126 + E Sbjct: 121 RTQQLQE 127 >gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R G+ +A +A E P+ +V+D M + Sbjct: 10 RILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMES-YAPDLVVLDVQMPRMDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ V + L + G AGA+ +L+KPF + L +R L + Sbjct: 69 TAARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 >gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ R GF V EA + + + + + +++D M + Sbjct: 1 MKTILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQP-IDLVLLDLMMPVLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L + + + G GA+ +++KPF+ L ++ + Sbjct: 60 GWTVCKMLRRE---RKIPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVL 116 Query: 119 QMQKSKDE 126 + + E Sbjct: 117 RRAEGIGE 124 >gi|291445851|ref|ZP_06585241.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348798|gb|EFE75702.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ R G+ A +A E P+ +V+D M + Sbjct: 30 QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEA-YAPDLIVLDIQMPRMDG 88 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ + L + G AGA+ +L+KPF + L +R L + Sbjct: 89 LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 147 >gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219] gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +LLVD + + + + F + AT+ EA E +KE + + +++D M + Sbjct: 1 MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKV-DLVLMDIMMPIMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ ++ + +L + + E I G GA+ ++ KPF+ E + ++ + Sbjct: 60 GV-KATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRR 118 Query: 121 QKSKDENQ 128 K Q Sbjct: 119 FKELGSQQ 126 >gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R G+ V A E + ++ P+ +++D M + Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKF-NQVKPDMVLLDVMMPKMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 64 EVCRRIRKLG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120 >gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330] gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO] gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330] gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V+ A EA E E+ P+ +++D + + Sbjct: 1 MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKV-AEVEPDLILLDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-REVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 KSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALII-DRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] Length = 240 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD ++ K + G+ V EA E +E + +++D M + Sbjct: 8 MAKILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELA-REGKFDLIILDLMMPKID 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R ++V + L + I G GA+ ++ KPFN L+ +R L + Sbjct: 67 GLQACMRIRE-FSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRR 125 Query: 121 QKSKDENQ 128 + ++Q Sbjct: 126 SGAAVQHQ 133 >gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CNEVA-9066] gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055] gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Western North America USA6153] gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger B] gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Vollum] gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Australia 94] gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 239 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLD 131 K + E Q + Sbjct: 120 RTKLQQEEQVTE 131 >gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ ++ G+ EA E + +E P+ +++D + + Sbjct: 1 MSRILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMA-QEKNPDLILLDVMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GFTV-LRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRR 118 >gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1] gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1] gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 50/124 (40%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD VR + G+ V A EA L P+ +V+D M + Sbjct: 5 ILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPRLDGLE 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 G DV + L + G AGA+ +++KPF+ E L +R L + + Sbjct: 65 TTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRSRP 124 Query: 124 KDEN 127 + + Sbjct: 125 ESQQ 128 >gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 272 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E P+ +V+D M Sbjct: 34 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPT-CTPDLVVLDVMMPKLDGY 92 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 93 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 149 Query: 121 QKSKD 125 + + Sbjct: 150 VEKEQ 154 >gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD VR V R GF V A A E +P+ +V+D M G L Sbjct: 7 RVLVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQF-AERVPDLVVLDVMMPGLNGL 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + V + L + E IAG + GA+ ++ KPF+ + L + + + Sbjct: 66 EVCRRLRQ---TSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRR 122 Query: 121 QKS 123 + Sbjct: 123 ARM 125 >gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931] gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931] Length = 234 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + ++ GF V A + EA E E E P+ +V+D M G+ F Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENE-QPDLIVLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L + E +AG AG + ++ KPF+ + + +R + + + Sbjct: 65 EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124 Query: 123 SKDEN 127 + E Sbjct: 125 NAQEE 129 >gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] Length = 234 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V+ A EA E E+ P+ +++D + + Sbjct: 1 MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKV-AEVEPDLILLDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-REVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R GF V EA S + + + P+ +++D M + Sbjct: 7 RRILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQH-PDLMILDVMMPEMDG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + V L + ++ G +GA+ +L KPFN + L +R L + Sbjct: 66 WEVCRRLRE---FSQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|87303913|ref|ZP_01086579.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87281609|gb|EAQ73617.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 248 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E +P+ +V+D M Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFP-NCMPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + + Sbjct: 126 VEKEA 130 >gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 234 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + ++ R+ G+ V + + E + E P+ +++D + V Sbjct: 4 TVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAF-EGKPDLVILDLMLPDVDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ ++ + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 EICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122 Query: 121 QKS 123 + Sbjct: 123 TQQ 125 >gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans TK24] gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans TK24] gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans TK24] Length = 248 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 15 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATA-YRPDLVVLDIQMPRMDG 73 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + L + G AGA+ +L+KPF + L +R L + Sbjct: 74 LTAARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 132 >gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 238 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +R++ + G+ + EA A E +++D + G+ Sbjct: 6 NRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDY-GLVILDVMLPGMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ+ + L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 65 VEVCTRLRQV---KSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILR 121 Query: 120 MQKSKD 125 + Sbjct: 122 RSSATA 127 >gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 236 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F EA P+ +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAV-SSFSPDLILLDLMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR ++V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YEVCREVR---HKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|114794859|pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob gi|114794860|pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob gi|114794861|pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob Length = 124 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|297517635|ref|ZP_06936021.1| transcriptional regulator PhoB [Escherichia coli OP50] gi|6573458|pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli gi|6573459|pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli Length = 127 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2] Length = 251 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD +R++ GF V A + EA E+ P+ LV+D + + F Sbjct: 12 TLLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTN-PDLLVLDVMLPDMDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +G + V +L D I G G + ++ KPF+ E + +R + + + Sbjct: 71 TVTRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 130 Query: 123 SKDENQ 128 S ++ + Sbjct: 131 SLEDEE 136 >gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family [Bacillus pseudofirmus OF4] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+V+ +R++ + G++V EA + EA E EK L + +++D M Sbjct: 1 MKEIRILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLY-SVVLLDVMMPE 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F +R++ + V V L + G + GA+ +L KPF +E L + Sbjct: 60 MDGFEVCREIRKV---SQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEA 116 Query: 117 LPQMQKSKDENQF 129 + + + Sbjct: 117 VLRRYGVSEPESR 129 >gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD +R++ L + GF EA EA + P+ ++ID M + Sbjct: 3 MSKIMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKML-NDNPDLVIIDVMMPNMD 61 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F H+R+ ++ V L + + + G GA+ +L KPF + L ++ L Sbjct: 62 GFELCRHLRR--YYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALL 119 Query: 119 QMQKSKDEN 127 + K + Sbjct: 120 RRYKIEASQ 128 >gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 237 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + ++ R G+ V + E + + + +V+D + G+ Sbjct: 7 KTILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKV-DLVVLDLMLPGMDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +M ++ + L + + + G GA+ ++ KPF+ L +R + + Sbjct: 66 IQICKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLR 125 Query: 120 MQKSKDENQF 129 +SK ++ Sbjct: 126 RSESKQDSSR 135 >gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD + ++ + G++V A A E E + L++D + G Sbjct: 1 MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGY-DLLILDIMLPG 59 Query: 59 ---VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 E +R+ +D+ + L + I G AGA+ ++ KPF+ E L ++ Sbjct: 60 PLNGFEVCKRIRE---FSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVK 116 Query: 116 ELPQMQKSKDE 126 + + +E Sbjct: 117 AILRRSHPSEE 127 >gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 235 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M S+L+VD + ++ + G+ V A A + E P+ +++D + Sbjct: 1 MPSVLVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEK-PDLIILDIMLPEQD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L ++Q + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GLAVCRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARL 119 Query: 119 QMQK 122 + + Sbjct: 120 RRSE 123 >gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1] gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 248 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + G Sbjct: 15 RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQ-MDKLMQRELFSLVVLDLMLPGEDGI 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +D+ + L + IAG AGA+ +L KPFN + L ++ + + Sbjct: 74 AICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133 Query: 123 SK 124 + Sbjct: 134 RE 135 >gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 2250] gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae FF5] gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae 642] gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. B076] gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. race 4] gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. mori str. 301020] gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. pisi str. 1704B] gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae Cit 7] gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aceris str. M302273PT] gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila SL1] gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family [Halorhodospira halophila SL1] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ VR++ GF V A + E ++ P+ +++D + + Sbjct: 4 RILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQL-RQRPPDLILLDWMLPQVSGV 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E+ +++ + + L + E + G +G + ++ KPF+ L ++ + + Sbjct: 63 EWARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVLRR 122 Query: 121 QKSKDENQFLDA 132 + L+A Sbjct: 123 TAPSTADTPLEA 134 >gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 242 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A A ++ P+ +V+D + + F Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSAL-RLARDTHPDLVVLDVMLPDMDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V V +L D + G G + ++ KPF+ E + +R + + Sbjct: 70 SVTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127 >gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 236 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ A EA E+E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEN-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TENIE 123 >gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 226 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + G+ + E E +E LP+ +++D + G++ Sbjct: 1 MKKVLIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRE-LPDLILLDLMLPGMM 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + V L D + G GA+ +++KPF+ L +R + Sbjct: 60 GTEVCSALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAIL 119 Query: 119 QMQKSK 124 + + Sbjct: 120 RRSSQE 125 >gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 241 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L++VD +R + GF V A+ EA E E P+ +V+D + + F Sbjct: 13 RLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIV-EGEPDLVVLDVMLPDMDGF 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D + G G + ++ KPF+ E + +R + + + Sbjct: 72 TVTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQ 131 Query: 123 SKDEN 127 + D + Sbjct: 132 AHDAD 136 >gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 230 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 5/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+V+ + +V R GF V EA+ +A E + + +++D + + Sbjct: 1 MDRILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELV-SDFNFSLIILDLMLPHMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ G ++ + L + E+ I G GA+ +++KPF+ L + + Sbjct: 60 GEDVCKQLRRQ--GNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVL 117 Query: 119 QMQKS 123 + +S Sbjct: 118 RRYRS 122 >gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] Length = 1389 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D + +R+ L G+ V E T EA + P+ +V D M L Sbjct: 641 RVLVADDNADMREYLARLLTAAGYQVTEVTDGVEALAAARR-RTPDLVVSDVMMPRLDGL 699 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ +R P V V L E I G RAGA+ +L+KPF L +R ++ Sbjct: 700 ELVSRLRADPRTASVPVVLLSARAGQEASIEGLRAGADDYLVKPFAAAELLARVRANVEL 759 Query: 121 QKSKD 125 + +D Sbjct: 760 ARLRD 764 >gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + +V + + G+ EA+E E P+ +++D + + Sbjct: 7 KILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFL-EYKPDLVLLDIMLPHVDGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R+ V L + + + G GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRKEYE---TPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRR 122 Query: 121 QKSKDENQ 128 +EN+ Sbjct: 123 YNVDNENK 130 >gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 218 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + Sbjct: 118 KQEQQEEFQ 126 >gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 256 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 23 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 81 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 82 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 138 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 139 RRNQATAQ 146 >gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 236 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + E E++P+ +++D + Sbjct: 4 KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-EVMPDLILLDIMLPQKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L +R + Sbjct: 63 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLR 119 Query: 120 MQ 121 Sbjct: 120 RH 121 >gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 274 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + V R GF V A A E P+ +++D + G+ Sbjct: 32 RRILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELA-ASRQPDLVILDRMLPGLDG 90 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ V V + + I G GA+ ++ KPF+ L ++ + + Sbjct: 91 VEVCRRLRQ---TMSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLR 147 Query: 120 M 120 Sbjct: 148 R 148 >gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+++ + + ++ G+ V A E + E P+ +++D + +E Sbjct: 5 ILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQID-ERQPDLVLLDWMLPKVSGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P ++ V L + + G GA+ +L KPF+ L +R + + Sbjct: 64 VCRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVLRRI 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB [Saccharophagus degradans 2-40] Length = 234 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R + R + V EA +A + P+ +++D + G Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIV-DKKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ + +++ + L + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 226 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + ++ GF V + A +E P +++D + G+ Sbjct: 5 QKIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKI-QEKPPKLVILDIMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ + V + L + D + G GA+ +++KPF+ + L ++ + + Sbjct: 64 IALCKEVRK---FSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLR 120 Query: 120 MQKSKDENQ 128 + + E++ Sbjct: 121 RYEGESEDK 129 >gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F A EA + + +P+ +++D + G Sbjct: 3 KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ R+ L D+ + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LDLARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RTREDDED 129 >gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ R G+ V +A + E P+ +++D + G+ Sbjct: 4 TKILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHK-PDLVLLDIMLPGMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + + + + G GA+ +++KPF+ + + ++ + + Sbjct: 63 WQVCREIRKKSEK---PVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RYSGAE 125 >gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 237 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V+ A EA E E+ P+ +++D + + Sbjct: 5 KKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKV-AEVDPDLILLDLMLPKMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 64 LEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 121 >gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2143] gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2143] Length = 236 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 ++L+VD +R++ R + GF EA EA + P+ +++D + G Sbjct: 4 KTILIVDDEAPIREMIRMSLDMAGFNCREAADTREAY-RVIADSKPDLVLLDWMLPGGSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E + +R+ L D+ V L + D + I G GA+ ++ KPF + ++ L + Sbjct: 63 IELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|312883993|ref|ZP_07743710.1| sensory box sensor histidine kinase/response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309368451|gb|EFP95986.1| sensory box sensor histidine kinase/response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 1127 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD I ++ G+ V A E E P +++D + + + Sbjct: 723 ILVVDDEPINLRILNSYLKTEGYRVLTVNDGLSALEAVRNET-PQLILLDIMIPDMSGYD 781 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + L E + G +GAN FL KPFN++ L + Sbjct: 782 VCVKLRKTYDHATLPIIMLTALNQTEDRLKGFASGANDFLSKPFNQKELLARITAHLAAS 841 Query: 122 KSKD---ENQFLD 131 +++ ENQ L+ Sbjct: 842 QAEQRKMENQKLE 854 >gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 263 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ V +A EA + E + + ++D + G+ Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESV-DMFIVDIMLPGMDG 86 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R M + V +L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 87 FELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFR 146 Query: 120 MQKSKDENQ 128 + + + Sbjct: 147 RIQLSAQER 155 >gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 236 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V+ A EA E E E+ P+ +V+D + Sbjct: 3 KKILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVE-EVQPDLIVLDIMLPKRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ ++ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603] gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621] gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621] gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603] gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 218 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 247 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +++ V L + + G AGA+ +L KPF E L +R L Sbjct: 60 GFTVCQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676] gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676] Length = 218 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|262199700|ref|YP_003270909.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262083047|gb|ACY19016.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 397 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD + V ++ G+ V A EA E + + P+ +++D M G+ F Sbjct: 22 VLLVDDNPANLAVLFEHLDEHGYRVLVAEDGSEAVELASR-IQPDIILLDVMMPGIDGFE 80 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE--LPQ 119 ++ +D+ + ++ D + G RAGA ++ KPF + +R + + Sbjct: 81 TCRQLKSHSTLSDIPIIFMTALTDTRDKVEGFRAGAVDYVTKPFQHREVLARVRTHVVLR 140 Query: 120 M--QKSKDENQFLDA 132 + +D+ + L+A Sbjct: 141 RLDAELRDQKRVLEA 155 >gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter sphaeroides f. sp. denitrificans] Length = 230 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ R+V + GF V +A + EA +E P+ +V+D + +E Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEAL-MLVEEAGPDVIVLDWMLPSVSGIE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P V + L + + G GA+ +++KP++ L +R + Sbjct: 68 VCRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127 Query: 122 K 122 + Sbjct: 128 R 128 >gi|219849342|ref|YP_002463775.1| response regulator receiver modulated serine phosphatase [Chloroflexus aggregans DSM 9485] gi|219543601|gb|ACL25339.1| response regulator receiver modulated serine phosphatase [Chloroflexus aggregans DSM 9485] Length = 385 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 60/134 (44%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D S R + G + A+ + E+ ++E + +++D M + F Sbjct: 8 RILIIDDSEHNRYLLTRQLERRGHSIATASHGRQGLEYAQREP-FDVILLDLMMPEMDGF 66 Query: 63 IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + V + + + ++ AGA +L KPFN+ L + + Sbjct: 67 TVLDQLKRNPQTHHIPVIVISAINEIDDVVRCIEAGAEDYLTKPFNQTLLYAKINACLER 126 Query: 121 QKSKD-ENQFLDAI 133 ++ +D E +L+AI Sbjct: 127 KRLRDSEQAYLNAI 140 >gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor A3(2)] gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces coelicolor A3(2)] Length = 248 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ + G+ A +A E P+ +V+D M + Sbjct: 15 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATA-YRPDLVVLDIQMPRMDG 73 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + L + G AGA+ +L+KPF + L +R L + Sbjct: 74 LTAARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 132 >gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 232 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLV+ + ++ F V EA +E P+ +++D +EG + Sbjct: 5 RVLLVEDDAALAELVSWHLEREDFEVERTADGEEAI-LLARETPPDLVLLDWMIEGVSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R++ +V + L + E + G GA+ ++ KPF+ L + + + Sbjct: 64 EVCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123 Query: 121 QKSKDENQFLD 131 + + L Sbjct: 124 VRPALAGERLS 134 >gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1130 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD I +V + + V +A S EA E + +++D M + E Sbjct: 721 ILVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDIMMPNMTGYE 780 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R+ + V L + ++ G + GAN +L KPF ++ L ++ ++ Sbjct: 781 VCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHIKLS 840 Query: 122 KSKDENQF 129 K + Sbjct: 841 KITKAYER 848 >gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ +R++ + + G+ V A + A E E + +V+D + Sbjct: 1 MAKILVVEDEKNIRELIKFNLENAGYEVLTAENGKIALNSLEAE--IDLVVLDLMLPEVD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + + L + + + I G GA+ ++ KPF+ L ++ + Sbjct: 59 GMEVCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIF 118 Query: 119 QMQKSKDENQ 128 + K +Q Sbjct: 119 RRIKELKVDQ 128 >gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 239 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + R G V A++ EA E E +P+ +++D M + Sbjct: 7 KLILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDE-MPDVVLLDIMMPVMDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +R++ + V V L + D E I G GA+ ++ KPF+ L +R + + Sbjct: 66 F-ETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRH 124 >gi|238789578|ref|ZP_04633362.1| Transcriptional regulator in 2-component system [Yersinia frederiksenii ATCC 33641] gi|238722331|gb|EEQ13987.1| Transcriptional regulator in 2-component system [Yersinia frederiksenii ATCC 33641] Length = 232 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF V A +A + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLL--DNSIDLLLLDIMMPRKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQFLD 131 + ++ Q +D Sbjct: 116 RRSNWSEQQQNID 128 >gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R V + G+ V AT+ E + +E P+ +V+D + G+ Sbjct: 4 TILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEE-QPDLIVLDLMLPGMDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +DV++ L D +AG R GA+ +L KPF+ L + + + Q+ Sbjct: 63 EITARLRER-SDVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRRQR 121 Query: 123 SK 124 +K Sbjct: 122 NK 123 >gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 241 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A+ E + E + L++D + + Sbjct: 3 QRILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEP-FDLLILDLMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + L + D + G GA+ ++ KPF+ + +R + + Sbjct: 62 LDICKQLRQNK--KMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILR 119 Query: 120 MQKSKDE 126 E Sbjct: 120 RSAQLSE 126 >gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W] gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W] gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 218 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 233 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 9/125 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + V + G+ V A EA + KE+ + +++D + Sbjct: 1 MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 59 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + +R+ ++V + L +V+ E + G GA+ +L KPF+ L ++ Sbjct: 60 KIFGEEVCSKIRE---FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116 Query: 116 ELPQM 120 L + Sbjct: 117 ALIRR 121 >gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas entomophila L48] gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas entomophila L48] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402] gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402] Length = 235 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 7/126 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +RK+ + G+ EA A E E + +++D + G+ Sbjct: 1 MKEKILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSEN-FHCILLDIMLPGM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V L + + + G GA+ +++KPF+ + ++ + Sbjct: 60 DGIQVCKRLREE---KSTPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAI 116 Query: 118 PQMQKS 123 + +S Sbjct: 117 LRRSQS 122 >gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 236 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A + EA + E E P+ V+D + + F Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAE-EFQPDLAVLDVMLPDMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L E I G G + ++ KPF+ + + +R + + Sbjct: 68 TVTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127 Query: 123 SKDEN 127 S D++ Sbjct: 128 SLDDD 132 >gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae TIGR4] gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54] gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae] gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae] gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54] gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570] gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301] gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317] gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368] gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901] Length = 234 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QK 122 + Sbjct: 119 SQ 120 >gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 244 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 4/120 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+VD V +V GF V A +A P+ +V+D + G+ Sbjct: 12 MQSILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLA-AGRRPDLVVLDLMLPGMD 70 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V L D + I G GA+ ++ KPF+ L + + Sbjct: 71 GLEVCRRLRAGEQ-ARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVL 129 >gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus] Length = 267 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 2/116 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V +V + G+ V +A A P+ +V+D + + F Sbjct: 19 RVLVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAH-RPDLVVLDLMLPAMDGF 77 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R G V V L D E I G GA+ ++ KPF+ L + + Sbjct: 78 EVCRRMREHGP-VPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVL 132 >gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 236 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L++D +R++ G+ EA ++ +A E P+ +++D M G Sbjct: 9 KKVLIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDH-RPDLILVDWMMPGGSG 67 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ ++ V L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 68 IELTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 127 Query: 120 MQKSKDENQFLD 131 + ++ ++ Sbjct: 128 RATPQGVDEPIE 139 >gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB] gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 243 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 1/121 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + + GF V A + + + +V+D M G Sbjct: 10 ILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQ-MDKLRSREHYHLIVLDLMMPGEDGLT 68 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G + L + D I G GA+ +L KPFN L + + + Q S Sbjct: 69 ICRRLRGQGDQTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRRQGS 128 Query: 124 K 124 K Sbjct: 129 K 129 >gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 233 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + + G+ V A EA E+E P+ +++D + + Sbjct: 1 MPKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEK-PDLILLDLMLPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ ++ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-RQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRR 118 Query: 121 QKSKDEN 127 Q ++ Sbjct: 119 QDQLQQD 125 >gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 233 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ L++D + + Sbjct: 1 MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAE-RPDILILDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ + + Sbjct: 60 GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRR 118 Query: 121 QKSKDENQFLDA 132 ENQ +A Sbjct: 119 TDLTIENQEAEA 130 >gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis ATCC 29906] gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis ATCC 29906] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A F + P+ +++D + G Sbjct: 3 RRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLI-DPYPDLVLLDWMIPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +++ D+ + L + + E + G GA+ +++KPF+ + L ++ + + Sbjct: 62 IQVIKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 236 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + GF V A EA E KE P+ +++D + Sbjct: 3 KHILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERV-KERKPDLMLLDIMLPYKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ +++KPF+ L ++ + Sbjct: 62 MEVCREVRKQ---YDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLR 118 Query: 120 MQKSKDEN 127 Q+ ++ Sbjct: 119 RQQVAADD 126 >gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 233 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 9/125 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + V + G+ V A EA + KE+ + +++D + Sbjct: 1 MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 59 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + +R+ ++V + L +V+ E + G GA+ +L KPF+ L ++ Sbjct: 60 KISGEEVCSKIRE---FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116 Query: 116 ELPQM 120 L + Sbjct: 117 ALIRR 121 >gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + ++ G+ A E E E+ + P+ +++D + G+ Sbjct: 1 MQTVLIIEDEKDLAELLSFNLEREGYKTVIALDGAEGLEAVER-VQPDLILLDLMLPGMF 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 V++ + V L + + + G GA+ +++KPF+ L ++ + Sbjct: 60 GTDVCKTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVL 119 Query: 119 QMQ 121 + + Sbjct: 120 RRK 122 >gi|167630424|ref|YP_001680923.1| response regulator receiver modulated serine phosphatase [Heliobacterium modesticaldum Ice1] gi|167593164|gb|ABZ84912.1| response regulator receiver modulated serine phosphatase [Heliobacterium modesticaldum Ice1] Length = 394 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD ++ R G+ V A + +A E ++ LP+ +++D M G+ F Sbjct: 12 ILVVDDVVTNVELMRLQLTRAGYQVLTAFNGEQALESIQR-TLPDLILLDVMMPGMNGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A +++ P + V + + E I G AGA+ F+ KPFNR L ++ L +++ Sbjct: 71 VCAKLKEDPHTQLIPVVLVTALHEVEDRIKGIEAGADDFISKPFNRVELLTRVKSLLRIR 130 Query: 122 KSKDENQ 128 K + + Sbjct: 131 KLYRQLE 137 >gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 246 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ G+ V A A E ++ P+ +V+D M + Sbjct: 2 RVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARD-QPDIVVLDVMMPRMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G DV V L ++G GA+ +L+KPF E L +R L + Sbjct: 61 ETCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRR 118 >gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 244 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ G+ V A EA + P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITF-RNATPDLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 Query: 121 QKSKDEN 127 + N Sbjct: 123 VEKSGAN 129 >gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 232 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+VD + ++ + G+ FEA + A + K + +++D M Sbjct: 1 MKNILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDII-KNNKIDLVILDIMMSDKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++ V L + + I G GA+ ++ KPF+ + L ++ L Sbjct: 60 GYEVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALF 119 Query: 119 QMQKSKD 125 + ++ Sbjct: 120 RRIENLK 126 >gi|260775446|ref|ZP_05884343.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio coralliilyticus ATCC BAA-450] gi|260608627|gb|EEX34792.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio coralliilyticus ATCC BAA-450] Length = 1128 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + +V G+ V A + EA E E P +++D M G+ Sbjct: 724 LLVVDDEPVNLRVLDSFLRLEGYRVRTAKNGEEAVESVVHEK-PELMLLDIMMPGMSGYQ 782 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + V L + + G AGAN +L KPFN++ L + Sbjct: 783 VCEVLRKDYDHAQLPVIMLTALNQPDDRVRGFEAGANDYLSKPFNKQELAARITAHLTAS 842 Query: 122 KSKD---ENQFLD 131 K++ ENQ L Sbjct: 843 KAEQRRIENQQLQ 855 >gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + R G V AT+ EA E +E +P+ +++D M + Sbjct: 7 KLVLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREE-MPDIVLLDVMMPVMDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +R++ + V V L + + E + G GA+ ++ KPF++ L +R + + Sbjct: 66 F-EALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRH 124 Query: 122 KSK 124 ++ Sbjct: 125 YTQ 127 >gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 239 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD +R++ R G+ V EA EA + P +++D + Sbjct: 6 KAILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDE-PLLIILDLMLPKIDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++ P + + L D I G GA+ ++ KPF+ + +R + + Sbjct: 65 LEVCRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIR 124 Query: 120 MQKSKDENQ 128 + + + + Sbjct: 125 RVEDRRKPE 133 >gi|320355079|ref|YP_004196418.1| response regulator receiver modulated diguanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320123581|gb|ADW19127.1| response regulator receiver modulated diguanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 326 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 1 MDS--------LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVI 52 M +L+VD + +V K+ + G+ V +A S +A + LP+ +++ Sbjct: 4 MKKKEKTTDASILIVDDNPVVIKLLHAMLARAGYQVVQAASGQQALALLASDCLPDLILL 63 Query: 53 DESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 D M G LE +++ P D+ V ++ D E ++ G AGA +++KP +E L Sbjct: 64 DIDMPGVSGLEACRLIKENPRTADIPVIFVTASNDKEHIVNGFAAGAQDYIIKPSTQEEL 123 Query: 111 RFAMRELPQMQKSKDENQFLDA 132 +R + +++ + A Sbjct: 124 LARVRTHLALCRTQQALKASRA 145 >gi|291572094|dbj|BAI94366.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 378 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D I+R++ + G+ V A++ E E KEL P ++ D M Sbjct: 1 MFKILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKA-KELRPALMICDWIMPRLT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E V+ MP + + L + + G AGA+ FL KP L +R Sbjct: 60 GIEVCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGL 119 Query: 119 QMQK----SKDENQFLD 131 ++ + + + Q L+ Sbjct: 120 RLHQLSQDLQTQKQLLE 136 >gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter litoralis Och 149] gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter litoralis Och 149] Length = 230 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ R+V + GF V A + EA E P+ +V+D M +E Sbjct: 9 VLVVEDESAQREVLTYNLEAEGFAVSRAENGEEAM-MLVDETAPDLIVLDWMMPNLSGIE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + + L + + G GA+ +++KP++ L +R + Sbjct: 68 VCRRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLRRV 127 Query: 122 KSKDENQFLD 131 + + L+ Sbjct: 128 RPAATGERLE 137 >gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ G++ EA A + +++D M + Sbjct: 1 MAKILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQL-SGGGFDLVILDLMMPFMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V L + +AG +GA+ +++KPF+ L +R + Sbjct: 60 GMTCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNR 119 >gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 231 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + GF V A E + E N +++D M + Sbjct: 1 MHKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLL-AEQHFNLVLLDVMMPKLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R D V L D + + G AGA+ +L KPF+ L +R + + Sbjct: 60 GFAMLARLR-KTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRR 118 Query: 121 QKSKDENQ 128 +S + Sbjct: 119 TQSTQPQR 126 >gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 230 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ +R + + V EA + + + E P+ +++D + G + Sbjct: 6 ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLL-EHQPDCVLLDWMLPGVSGIS 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + L + + G +GA+ +++KPF+ L ++ L + Q Sbjct: 65 LAQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRRQ 124 Query: 122 KSKD 125 + Sbjct: 125 SPEK 128 >gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803] gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803] Length = 218 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALTKLESDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ EA EA + P+ +++D + + Sbjct: 3 KKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQN-PDLILLDIMLPKMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R++ + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 62 FTVC-RKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRR 119 >gi|209523935|ref|ZP_03272487.1| response regulator receiver modulated serine phosphatase [Arthrospira maxima CS-328] gi|209495607|gb|EDZ95910.1| response regulator receiver modulated serine phosphatase [Arthrospira maxima CS-328] Length = 394 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D I+R++ + G+ V A++ E E KEL P ++ D M Sbjct: 17 MFKILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKA-KELRPALMICDWIMPRLT 75 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E V+ MP + + L + + G AGA+ FL KP L +R Sbjct: 76 GIEVCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGL 135 Query: 119 QMQK----SKDENQFLD 131 ++ + + + Q L+ Sbjct: 136 RLHQLSQDLQTQKQLLE 152 >gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334] gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334] Length = 234 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QK 122 Sbjct: 119 SH 120 >gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 233 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ L++D + + Sbjct: 1 MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAE-RPDILILDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ + + Sbjct: 60 GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRR 118 Query: 121 QKSKDENQFLDA 132 ENQ +A Sbjct: 119 TDLTIENQEAEA 130 >gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 229 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F A EA + + +P+ +++D + G Sbjct: 3 KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ R+ L ++ + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RTREDDED 129 >gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 228 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ G+ V A + A + + + P+ +V+D + G+ Sbjct: 6 KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQT-PSLVVLDIMLPGIDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + + L + + + G GA+ +++KPF + L ++ + + Sbjct: 65 QVCREIRKVSS---IPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121 Query: 121 QKSKD 125 + K+ Sbjct: 122 YEHKE 126 >gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 244 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD + ++ G+ V A EA +E+ P+ +V+D M G+ F Sbjct: 16 LLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKA-REVEPDLVVLDVMMPGLDGFE 74 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R V V +L E + G + G + ++ KPF+ + L +R L + Sbjct: 75 VVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRRSGH 134 Query: 124 KDE 126 +++ Sbjct: 135 REQ 137 >gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 237 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA +E P+ +++D+ + + Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEK-PDLVLLDQMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+ ++ V + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GV-EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118 Query: 121 QKSKDENQ 128 +K+ + Q Sbjct: 119 RKAVAQAQ 126 >gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] Length = 239 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQ 128 K + E Q Sbjct: 120 RTKLQQEEQ 128 >gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + ++ + + G+ A + +A KE P+ +++D + G+ Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYECICALNGIDALNIV-KEEKPDLVLLDLMLPGMD 61 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + + + + G GA+ ++ KPF+ + ++ + Sbjct: 62 GYDVCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121 Query: 119 QMQ 121 + + Sbjct: 122 RRR 124 >gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 228 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D + ++ F GF V A + E PN +++D + G Sbjct: 6 KILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHF-SNNPPNIVILDIMLPGKDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+M +D+ + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 65 DICREIRRM---SDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRR 121 Query: 121 QKS 123 Sbjct: 122 YNQ 124 >gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 229 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + GF EA A E P+ +++D + G Sbjct: 3 RKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMV-EPYPDMVLLDWMLPGGSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +Q + + L + E I G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQIAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVIR 121 Query: 120 MQKSKDENQFLD 131 + ++ Sbjct: 122 RVAPTSLEEAIE 133 >gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator [Pseudomonas fluorescens SBW25] gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator [Pseudomonas fluorescens SBW25] gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] Length = 229 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 236 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ A EA E+E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEK-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 234 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD +R + R GF V EA +A + + P+ +++D + G Sbjct: 1 MKKILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAY-WLITDQDPDLVLLDWMLPGGS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E ++ +++ + V + + E +I G GA+ ++ KPF+ + L +R + Sbjct: 60 GIELLSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIF 119 Query: 119 QMQKSKDENQFL 130 + + D N L Sbjct: 120 RHTEDDDVNHQL 131 >gi|159037489|ref|YP_001536742.1| response regulator receiver modulated diguanylate cyclase [Salinispora arenicola CNS-205] gi|157916324|gb|ABV97751.1| response regulator receiver modulated diguanylate cyclase [Salinispora arenicola CNS-205] Length = 326 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + + G+ V A EA E + P+ V+D M LE Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGYEVIHARDGQEALE-VIAQHRPDLAVVDLMMPRVDGLE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P+ + V L + + G AGA+ +L+KPF+ L + + Sbjct: 70 LTRRLRADPMTAALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRRN 129 Query: 122 KSKDE 126 K E Sbjct: 130 KEFRE 134 >gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 234 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 7/138 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEK-PDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKS-----KDENQFLDAI 133 + ++E+ L ++ Sbjct: 119 TELIAVDNQEEDSKLQSL 136 >gi|308188627|ref|YP_003932758.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1] gi|308059137|gb|ADO11309.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1] Length = 232 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A+ +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL--DNSIDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQF 129 + ++ Q Sbjct: 116 RRSNWSEQQQQ 126 >gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 228 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ G+ V A + A + + + P+ +V+D + G+ Sbjct: 6 KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQT-PSLVVLDIMLPGIDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + + L + + + G GA+ +++KPF + L ++ + + Sbjct: 65 QVCREIRKVSS---IPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121 Query: 121 QKSKD 125 + K+ Sbjct: 122 YEYKE 126 >gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB [Ralstonia eutropha JMP134] gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB [Ralstonia eutropha JMP134] Length = 235 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G A + +A ++LP+ +++D + G Sbjct: 4 SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGA 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 TFAKELRANDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 242 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + ND GF V A + + K+ +P+ ++ D M Sbjct: 16 RILLVDDEPGIRTAVQAYLNDEGFDVLTAIDGEDGLQKA-KQFMPDVVITDVMMPQCDGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ V +L + G +AG + ++ KPF+ + L ++ + + Sbjct: 75 ELLRQLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELVARVKNVVKR 134 Query: 121 QK 122 Q+ Sbjct: 135 QE 136 >gi|116749733|ref|YP_846420.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] gi|116698797|gb|ABK17985.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] Length = 227 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +V ++ G+ + ATS +A + + + +++D M + F Sbjct: 10 NILIVDDISKNIQVLGNILRRDGYSLSFATSGTQALDMVFADDY-DLILLDVMMPEMDGF 68 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++P G + + +L + D E ++ G +AG ++ KPFN E L + ++ Sbjct: 69 EVCRKIRELPDGQAIPIIFLTAKTDEEDIVKGFQAGGTDYVTKPFNSEELLARVHAHLEL 128 Query: 121 QKSKDENQF 129 ++++DE Q Sbjct: 129 KRARDEIQL 137 >gi|325298032|ref|YP_004257949.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324317585|gb|ADY35476.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1336 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + R RH + V A++ EA +EL P+ ++ D M G+ Sbjct: 1088 LLVVDDNEDFRLFMRHSLELQ-YRVEVASNGQEALSKI-QELQPDLVISDVMMPGMDGNE 1145 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V L E + G GA+ ++ KPFN L +R+L ++ Sbjct: 1146 LCRLIKGDKRTAHIPVILLTARQAVESKVKGLETGADDYVTKPFNMTVLVLRIRKLIELS 1205 Query: 122 KSKDENQ 128 + Q Sbjct: 1206 RYHRSAQ 1212 >gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 240 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A+ EA + E E P+ +V+D + Sbjct: 3 KKILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEK-PDLIVLDLMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ L + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RSEIAS 125 >gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 256 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 23 MARILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 81 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 82 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 138 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 139 RRNQATAQ 146 >gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] Length = 229 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F A EA + + +P+ +++D + G Sbjct: 3 KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ R+ L ++ + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RTREDDED 129 >gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 221 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD +R+V G+ V EA EA + +V+D + + Sbjct: 1 MARVLLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKI---PQASLVVLDLMLPRLS 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ V L + + E+ I G GA+ ++ KPF+ + +R L + Sbjct: 58 GWEVARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRR 117 Query: 121 QKSKDEN 127 K E Sbjct: 118 SGLKAEL 124 >gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 236 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + A EA E+E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEK-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] Length = 234 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F A PN +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAF-SSFAPNLILLDLMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRQK---SNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RYQ 123 >gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 228 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+V+ ++++ G A SV +A + +E LP+ +++D + G+ + Sbjct: 4 NILVVEDEPAIQELLALNLTQAGHNPVRALSVEQA-QMLIREALPDLILLDWMLPGMSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF ++ L + + L + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 EFARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + + L+ Sbjct: 123 RAPQMTDDPLE 133 >gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + G+ A + +A + KE +P +++D + G+ Sbjct: 5 KILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIV-KEEMPQLILLDVMLPGMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + V + + + G GA+ ++ KPF+ L ++ + + Sbjct: 64 DVCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRR 123 Query: 121 QKSK 124 K Sbjct: 124 TALK 127 >gi|298482083|ref|ZP_07000271.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298271640|gb|EFI13213.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1458 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ +++ + + V A++ E + + LP+ ++ D M + Sbjct: 1200 SILVVEDNEELKAFLKNILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1257 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1258 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1317 Query: 121 QKSKDE---NQFLD 131 +K+ E N+ ++ Sbjct: 1318 RKALQEIYMNRLME 1331 >gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 256 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 23 MARILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 81 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 82 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 138 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 139 RRNQATAQ 146 >gi|187735605|ref|YP_001877717.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] gi|187425657|gb|ACD04936.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] Length = 234 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ + H + + + G A A E ++ P +++D+ M G+ Sbjct: 1 MATILIAEDDHAISDLVAYNLERAGHTPLAAYDGLTALEVARRDK-PELILLDQMMPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ ++ V +L + E I G GA+ ++ KPF+ + L + + Sbjct: 60 GHGVLRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVL 119 Query: 119 QM 120 + Sbjct: 120 KR 121 >gi|153873132|ref|ZP_02001814.1| signal transduction histidine kinase [Beggiatoa sp. PS] gi|152070402|gb|EDN68186.1| signal transduction histidine kinase [Beggiatoa sp. PS] Length = 480 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD R+ + L + + A S EA EL+P+ +++D M G+ F Sbjct: 6 RLLIVDDEKRGREALKILLASENYQLILAASGEEALLKAP-ELVPDLILLDVMMPGMDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H+R P +V + L D + + G AGA+ F++KPF+R L +R + ++ Sbjct: 65 EVCQHIRAHPQLGEVPIIMLTAMSDRKTRLRGIEAGADDFIIKPFDRVELLARVRTIIRL 124 Query: 121 QKSK 124 + + Sbjct: 125 NRYR 128 >gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] Length = 257 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + D G++V A + + + L + +V+D + Sbjct: 23 QRILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQ-MDKLMQRELFSLIVLDLMLPNEDG 81 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R +D+ + L + IAG AGA+ +L KPFN + L ++ + + Q Sbjct: 82 ISICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQ 141 >gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab] gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab] Length = 251 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + R G+ V +AT + ++LP+ +++D + V Sbjct: 1 MARILIIEDDPSILDILRINLELAGYEVVKATDGVRG-QALALQVLPDLIILDLMLPQVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +++ + L + I G AGA+ +L KPF + L +R L Sbjct: 60 GLTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++++ + V + EA + LP+ +++D + G+ Sbjct: 4 TILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKII-NHTLPDLVLLDWMLPGMSGA 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R+ D+ + L D + G +GA+ ++ KPF+ L ++ + + Sbjct: 63 DFARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + + ++ Sbjct: 123 RAPEAADDVVE 133 >gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] Length = 230 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ R+V + GF V +A + EA +E P+ +V+D + +E Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEAL-MLVEEAGPDVIVLDWMLPSVSGIE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P V + L + + G GA+ +++KP++ L +R + Sbjct: 68 VCRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127 Query: 122 K 122 + Sbjct: 128 R 128 >gi|22298696|ref|NP_681943.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294876|dbj|BAC08705.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 391 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L++D R + R D G+ V A+ E E P ++ D M LE Sbjct: 10 ILVIDDDPTTRLLLRKTLRDLGYSVSVASHGREGIAIATAEK-PALIICDWMMPELDGLE 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 H++Q + F L + + + I G AGA+ FL KP + LR ++ ++ Sbjct: 69 VCRHIKQDEELSRSFFILLTAKGELQDRIQGLDAGADEFLSKPIDPNELRARIQAGLRLY 128 Query: 121 ---QKSKDENQFLDA 132 Q + Q L+A Sbjct: 129 QLSQDLLKQKQLLEA 143 >gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1152 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + +V + + + V A S +A + E+E P+ +++D M + Sbjct: 718 SILVVDDEPVNLQVLVNQLHVARYRVRIANSGQQALDLVEEET-PDLILLDIMMPHMTGY 776 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + V L ++ G +AGAN ++ KPF+R+ L +R Q+ Sbjct: 777 EVCQRLRRTYNAAQLPVIMLTARSRVSDVVQGFQAGANDYVAKPFSRDILLARVRTQLQL 836 Query: 121 QKS---KDENQFLD 131 ++ EN L Sbjct: 837 GRAYQTLAENMRLK 850 >gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family [Marinomonas mediterranea MMB-1] Length = 231 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L++D +R++ G+ EA + E P+ +++D M G Sbjct: 4 KKVLIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDH-RPDLILVDWMMPGGSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ ++ V L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 MQKSKDENQFLD 131 + ++ ++ Sbjct: 123 RATPQGVDEPIE 134 >gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system with phor [Cupriavidus taiwanensis LMG 19424] gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system with PhoR [Cupriavidus taiwanensis LMG 19424] Length = 235 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G A + +A ++LP+ +++D + G Sbjct: 4 SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGA 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 NFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|158320115|ref|YP_001512622.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140314|gb|ABW18626.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus oremlandii OhILAs] Length = 451 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D +R + G+ ++EA + + E E E+ P+ +++D M + Sbjct: 3 KRILIIDDEKNMRWAIKKALEKEGYNIYEAENGQDGLEKLE-EIYPDLILLDLRMPVMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + D+ V L E + + GA ++ KPF+ E L+ +++ + Sbjct: 62 MEALQRIKEINQDIPVIMLTAHGTMESAVEAMKLGALDYISKPFDIEELKVLIKKALNVG 121 Query: 122 KSKDENQFLDA 132 + K E +L Sbjct: 122 ELKSEVNYLRE 132 >gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17] gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17] Length = 234 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A S E E K + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGG-IDLVLLDLMLPGID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVL 116 Query: 119 QMQKSKDE 126 + + E Sbjct: 117 RRNQGAVE 124 >gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 229 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LLLV+ + ++ + F G+ V EA E P+ +++D + G + Sbjct: 5 KLLLVEDDTALAELVEYRFRGEGYDVRTTADGDEAL-LLAAEDTPDLVLLDWMIGGTSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + L D + + G GA+ ++ KPF+ L + + + Sbjct: 64 EVCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAVLRR 123 Query: 121 QK 122 + Sbjct: 124 VR 125 >gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 3/134 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + + F V A + EA + +E P+ +V+D M G+ Sbjct: 1 MKPKVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEH-PDLVVLDVMMPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + R +D+ + L + + + G + G + +L KPF+ L +R + Sbjct: 60 DGWEVCSRLHE-LSDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILA 118 Query: 120 MQKSKDENQFLDAI 133 + Q + I Sbjct: 119 RAQRSLPAQRKNQI 132 >gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Cupriavidus metallidurans CH34] Length = 235 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G A + +A ++LP+ +++D + G Sbjct: 4 SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGA 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 TFAKELRNNDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3] gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3] gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 218 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] Length = 218 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 243 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + R G V A++ EA E E +P+ +++D M + Sbjct: 7 KLILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDE-MPDVVLLDIMMPVMDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +R++ + V V L + D E I G GA+ ++ KPF+ L +R + + Sbjct: 66 F-ETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRH 124 >gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Psychrobacter sp. 1501(2011)] Length = 240 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGVL 60 +L+++ + ++ + V A + E + KE + +++D + + Sbjct: 3 KQILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMD 62 Query: 61 E--FIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R + V + L + D + G GA+ ++ KPF L +R Sbjct: 63 GMQVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122 Query: 117 LPQMQKSKDE 126 + + + ++ Sbjct: 123 VLRRHEQPNQ 132 >gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] Length = 229 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F A EA + + +P+ +++D + G Sbjct: 3 KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ R+ L ++ + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RTREDDED 129 >gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 239 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGV 59 M ++L+VD +R + + F+ GF V A E ++ + +V+D + G+ Sbjct: 1 MPTVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGM 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R G + + L + ++ G GA+ ++ KPF+ L R + + Sbjct: 61 DGLEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLR 120 Query: 120 MQKSKDEN 127 +S++++ Sbjct: 121 RTESREDD 128 >gi|153868898|ref|ZP_01998627.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074527|gb|EDN71372.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 378 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+VD +V + + G+ V A + +A P+ +++D M Sbjct: 1 MKPETILVVDDLADNLRVLIGILSQQGYKVRPARNGQQALLMARTSP-PDLILLDIMMPE 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + ++ + + ++ + I GA ++ KPF E + + Sbjct: 60 MDGYEVCQQLKADQKTHHIPIIFISALNEVLDKIKAFSLGAVDYITKPFQAEEVLARVET 119 Query: 117 LPQMQKSKDEN 127 ++ + E Sbjct: 120 HLKLHRLHHEL 130 >gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. CCS2] gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. CCS2] Length = 228 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ R+V + GF V A + E C +E P+ +V+D M +E Sbjct: 7 VLIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGL-LCVEENAPDVIVLDWMMPNLSGIE 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + + L + + G GA+ +++KP++ L +R + Sbjct: 66 VCRRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 125 Query: 122 KSKDENQFL 130 + Q L Sbjct: 126 RPATVGQVL 134 >gi|125974309|ref|YP_001038219.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum ATCC 27405] gi|256003472|ref|ZP_05428462.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum DSM 2360] gi|281418364|ref|ZP_06249384.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum JW20] gi|125714534|gb|ABN53026.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum ATCC 27405] gi|255992496|gb|EEU02588.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum DSM 2360] gi|281409766|gb|EFB40024.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum JW20] gi|316941457|gb|ADU75491.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum DSM 1313] Length = 310 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + + K+ + + G+ V A++ + E E P+ +++D M + Sbjct: 4 KKILVIDDTEFMTKLISDVLMNEGYEVVTASNGRQGIEMVRIEK-PDLVLLDVVMPDMDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + + L + + + + G GA+ ++ KPFN L +R + Sbjct: 63 FEVCRILREDEGNNLMPIIMLTAQDNEDDKLTGLELGADDYITKPFNTRELVSRVRNTLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0205] Length = 243 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF+V A + +ELLP+ ++ D M Sbjct: 18 RLLLVDDEPGLRTAVQAYLEDEGFVVTTAVDGEDGWAKA-QELLPDVVISDVMMPRLDGY 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + I G +AG + ++ KPF+ + L + + + Sbjct: 77 GLLRKLREDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDELVARVHNVVKR 136 Query: 121 QK 122 Q+ Sbjct: 137 QE 138 >gi|317121455|ref|YP_004101458.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591435|gb|ADU50731.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 326 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + K R GF V AT +A E + +++D + + Sbjct: 4 RILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGG-IDLIILDLMLPEIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ + V + L + I G GA+ +++KPFN L +R + + K Sbjct: 63 TVC-REVRKTSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVLRRVK 121 >gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42] gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY] gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 243 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R GF V A A + +V+D M G Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGK-ALNRILLRETVDLIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 123 SKD 125 ++ Sbjct: 129 PQE 131 >gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB [Psychrobacter sp. 1501(2011)] Length = 232 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---V 59 ++L+V+ +R++ GF +A V +A P +++D + G Sbjct: 5 TILVVEDEPAIREMIVTTLEMSGFECLQAEDVNDAHNQVVDH-RPAMILLDWMLPGNQSG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +++ + +++ + L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 64 IDLCRRLKKDEMLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLR 123 Query: 120 MQKSKDENQFLDA 132 + ++A Sbjct: 124 RSSVLSGEKPIEA 136 >gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ A+ +A P+ +++D M + Sbjct: 10 RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKA-ASFHPDVVILDVQMPRMDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V +L ++G RAGA+ ++ KPF+ + + ++ L + Sbjct: 69 ETLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRSG 128 Query: 123 SKDENQ 128 + + Sbjct: 129 RAQQTR 134 >gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4] gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5] gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus 273-4] gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 254 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + D GF+V A + + + L + +V+D + G Sbjct: 12 QRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQ-MDKLLQRELFSLVVLDLMLPGEDG 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D+ + L + IAG AGA+ +L KPFN + L ++ + + Q Sbjct: 71 ISICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQ 130 Query: 122 KSK 124 + Sbjct: 131 NRE 133 >gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 230 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ + + R F + GF V A + +A + + + +V+D + G L Sbjct: 5 TVLLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPV-DLVVLDLMLPGKDGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + V L + D I G GA+ +++KPF+ L + + + Sbjct: 64 EVCRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRR 123 Query: 121 QKSKDENQFL 130 K + E + L Sbjct: 124 GKPQPEEETL 133 >gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047] Length = 236 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ A EA E+E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEK-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 228 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD +R+V R GF+V EA EA + E + +++D + + Sbjct: 1 MKTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRF-SEHKIDLIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V + L + I G GA+ +++KPF+ + ++ + + Sbjct: 60 GM-EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRR 118 Query: 121 QKSKDENQ 128 E + Sbjct: 119 SSGIPEKE 126 >gi|78067197|ref|YP_369966.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77967942|gb|ABB09322.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 280 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 40 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 98 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 99 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 158 Query: 120 MQKS 123 +++ Sbjct: 159 RRRA 162 >gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus pseudintermedius ED99] Length = 241 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 3/129 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD H +RK+ + G+++ EA+ EA + K + +++D + + Sbjct: 2 MTNEILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATK-YDYSCILLDLMLPEM 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 V+ D + L + + + G +GA+ +++KPF+ + ++ L + Sbjct: 61 DGLEVAVKLRE-LKDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLR 119 Query: 120 MQKSKDENQ 128 +S Q Sbjct: 120 RTESSKAEQ 128 >gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 236 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ A EA E+E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEED-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TENIE 123 >gi|163785470|ref|ZP_02180068.1| Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1] gi|159879260|gb|EDP73166.1| Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1] Length = 311 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R + + + G+ EA + E + +E P+ +++D M + F Sbjct: 8 KILIVDDDERNRLLFKVILKKEGYETTEAENGEEGIKKALEEK-PDVILMDVMMPVMDGF 66 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L + E+ + G +GAN FL KP + + L ++ Q+ Sbjct: 67 TATKKLKSDDRTKHIPVIILTALNEREEKLKGIESGANDFLTKPVDTKELLLRIKNHLQI 126 Query: 121 QKSKD 125 + +D Sbjct: 127 KAYQD 131 >gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 250 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + R G+ V +AT + ++LP+ +++D + V Sbjct: 1 MARILIIEDDPSILDILRINLELAGYEVVKATDGVRG-QALALQVLPDLIILDLMLPQVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +++ + L + I G AGA+ +L KPF + L +R L Sbjct: 60 GLTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum] Length = 240 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L++D +R++ + G+ V A EA ++E PN +V+D M Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREH-PNLVVLDLMMPKLDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 64 GVCQELRKE---SDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120 Query: 121 QKSKDENQFL 130 N L Sbjct: 121 VDKASSNNNL 130 >gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A EA + E E P+ +V+D + + Sbjct: 13 KKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESES-PDLIVLDLMLPKIDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +Q+ + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 72 LEVA-KQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 130 Query: 122 KS 123 + Sbjct: 131 DA 132 >gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 240 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + ++ R+ G+ V + + E E +E P+ L++D + + Sbjct: 4 TVLVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEK-PDLLILDLMLPDMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ ++ + L + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 EICKVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122 Query: 121 QKS 123 + Sbjct: 123 TQQ 125 >gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 235 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + + G+ V A EA E P+ +++D+ + Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDES-PDLVLLDQMLPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R D V + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GIEVLRQIRSND---DTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 116 Query: 119 QMQKSKDEN 127 + QK +N Sbjct: 117 RRQKVTVQN 125 >gi|320352850|ref|YP_004194189.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320121352|gb|ADW16898.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 357 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ S I +++ L G+ V A EA P+ +++D M + Sbjct: 7 SILVVEDSPINQRLLCKLLGKEGYAVRTADHGQEALALLRT-FRPDLILLDILMPQMDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V ++ D ++G AG ++ KPF+ + + ++ Sbjct: 66 ELCRLLKVGEATRDIPVIFISSLDDTSDKLSGFEAGGVDYITKPFHPAEVLARISTHLKL 125 Query: 121 QKSKDENQ 128 + + + + Sbjct: 126 CRLQRQLE 133 >gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550] gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550] gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 218 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 218 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1382 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L D + +R+ + L N + V A E + P+ ++ D M Sbjct: 630 RIILADDNADMREYVKRLLNKL-YQVEAVGDGMAALEAIRRHP-PDLVLTDVMMPQLNGF 687 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 E + +R PL ++ + L E ++ AGA+ +L+KPF+ L + + Sbjct: 688 ELLQQLRSNPLTQELPIILLSARAGEEYLVEALEAGADDYLVKPFSARELLVRIEANLKM 747 Query: 120 ---MQKSKDENQFLDA 132 Q++ + Q L A Sbjct: 748 AQLRQQATQKEQKLRA 763 >gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 245 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD +R+ + D GF V A + +A + P ++ D M G+ Sbjct: 17 RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLL-STTQPQLIISDIMMPGMDGY 75 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F+A VR++ + + V +L + I G RAG +++L KPF+ E L + L + Sbjct: 76 QFLAQVRKLDPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 135 Query: 121 QKSKDENQFLD 131 ++ ++ + Sbjct: 136 SRAASPSEVVA 146 >gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 231 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V +V G +V EA + P+ LV+D + + Sbjct: 4 RILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDP-PDLLVLDLMLPKMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V V L + + G GA+ ++ KPF+ L ++ + + + Sbjct: 63 QVCRKLRERWP-VPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVLRRAR 121 >gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1] gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1] Length = 224 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R++ R + GF V EA+ EA E E + ++D M + Sbjct: 1 MKSKILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENE-YIDLAIVDIMMPVM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F V +M D+ V L + + G G + ++ KPF+ + L ++ + + Sbjct: 60 DGF-QLVEEMKEFKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILK 118 Query: 120 MQKSKDEN 127 +N Sbjct: 119 RYSINSQN 126 >gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas vesicatoria ATCC 35937] gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas vesicatoria ATCC 35937] Length = 229 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F A EA + + +P+ +++D + G Sbjct: 3 KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ R+ L ++ + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RTREDDED 129 >gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 252 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 18 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 77 GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 135 >gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074] gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074] gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074] Length = 246 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR R G+ A +A E P+ +V+D M + Sbjct: 13 QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKA-ASYRPDLIVLDIQMPRMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R V + L + G AGA+ +L+KPF + L +R L + Sbjct: 72 LTAARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRS 131 Query: 122 KSKDEN 127 E Sbjct: 132 SYAVEQ 137 >gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 223 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R++ R GF EA + + +++D M + Sbjct: 1 MATILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGR-KQIDLILLDIMMPKLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F HVR+ + V + +L D + G + GA+ +++KPF+ + + + Sbjct: 60 GYRFCMHVRER---SQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVL 116 Query: 119 QMQKSKD 125 + K D Sbjct: 117 RRTKGTD 123 >gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus MO6-24/O] gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus MO6-24/O] Length = 1129 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 4 LLLV-DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+V D + +V G+ V A+ + E E E P L++D M G+ Sbjct: 724 LLIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEK-PALLLLDIMMPGMSGY 782 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ ++ + L E + G AGAN +L KPFN++ L ++ Sbjct: 783 QVCHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHLMA 842 Query: 121 QKSKD---ENQFLDA 132 K++ EN L+A Sbjct: 843 SKAEARRLENNRLEA 857 >gi|293370405|ref|ZP_06616959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292634553|gb|EFF53088.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1417 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ + + + + V A++ E + + LP+ ++ D M + Sbjct: 1159 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1216 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1217 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1276 Query: 121 QKSKDE---NQFLD 131 +K+ E N+ ++ Sbjct: 1277 RKALQELYMNRLME 1290 >gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159] gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159] Length = 225 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ R + GF V A S EA E P+ +V+D + G+ Sbjct: 1 MTHVLVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLV-AERRPDLIVLDWLLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + L E + G +GA+ +L+KPF L +R L + Sbjct: 60 GLAVVQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRR 119 Query: 121 QKSKDENQFL 130 + + + L Sbjct: 120 VEPASDEKPL 129 >gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)] Length = 248 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + G Sbjct: 15 RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQ-MDKLMQRELFSLVVLDLMLPGEDGI 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +D+ + L + IAG AGA+ +L KPFN + L ++ + + Sbjct: 74 SICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133 Query: 123 SK 124 + Sbjct: 134 RE 135 >gi|171911993|ref|ZP_02927463.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 235 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+ D VR++ G+ EA + + P+ +V+D M G Sbjct: 7 ILIADDEEDVRELVGMNLRRAGYDTVEAADGLQTLAQVRR-RKPDAIVLDVMMPGRDGFG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V L + + IAG GA+ +L KPF+ + L ++ L + Sbjct: 66 VCQELREDESTRHIPVIMLTAKGQTQDRIAGLERGADDYLSKPFSPKELVLRVQALLRR 124 >gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ G+ V EAT+ +A E + P+ VID M + Sbjct: 1 MPKILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEA-VKPDLAVIDVMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ D+ + L + + + G GA+ +++KPF+ L ++ L Sbjct: 60 GWALCSALRESF---DMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALL 116 Query: 119 QMQKSKDEN 127 + + Sbjct: 117 KRYRIASSQ 125 >gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 235 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKD 125 Sbjct: 119 TDLAS 123 >gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] Length = 228 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ R G+ V A +K L P+ +++D M + Sbjct: 5 KILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDK-LHPDLVLLDVMMPVMDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 64 EVCRKIRAKD---NTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRR 120 Query: 121 QKSKDENQ 128 +++N+ Sbjct: 121 STKEEDNK 128 >gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] Length = 229 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++VD + ++ R G+ V A EA E EKE P +++D + + Sbjct: 5 KIMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKED-PELILLDIMLPQLDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + + + G GA+ +++KPF + + ++ + + Sbjct: 64 QVCREIRKK---SQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRR 120 >gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101] Length = 253 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E + P+ +V+D M Sbjct: 15 TILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTD-PDLVVLDVMMPKLDGY 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 74 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130 Query: 121 QK 122 + Sbjct: 131 VE 132 >gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563] Length = 238 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + + G+ + A +A E P+ +V+D + Sbjct: 1 MKKILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKF-ASFQPDLVVLDLMLPKID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + V + L + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCRQIRKD---SQVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANI 116 Query: 119 QMQKSKDE 126 + E Sbjct: 117 RRTAVVAE 124 >gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24] gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24] gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24] Length = 280 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 2/116 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V +V + G+ V A EA P+ +V+D + G+ Sbjct: 54 RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARA-AGHRPDLVVLDLMLPGMDGL 112 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R G V V L D + + G GA+ ++ KPF+ L + + Sbjct: 113 EVCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 167 >gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 234 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A S E E K + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGG-IDLVLLDLMLPGID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVL 116 Query: 119 QMQKSKDE 126 + + E Sbjct: 117 RRNQGAVE 124 >gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R + G V A + P+ +++D + + Sbjct: 1 MARILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADP-PDLVILDIMLPTID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F H+R + V + L D + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFDVCRHIR---RSSSVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALL 116 Query: 119 QMQKSKDEN 127 + ++ ++ Sbjct: 117 RRRELLEQE 125 >gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 290 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD V +V + GF V A A E +P+ +V+D + G Sbjct: 53 TRVLVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAET-TVPDLVVLDLMLPGIDG 111 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ V V L + +AG GA+ ++ KPF+ L +R + + Sbjct: 112 IEVCRRLREQ---RPVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLR 168 Query: 120 M 120 Sbjct: 169 R 169 >gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 247 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] Length = 237 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + + G+ EA + ++ P+ +++D + G+ Sbjct: 3 KTVLIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQN-PDLVLLDLMLPGMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R G+ V + L + + G GA+ ++ KPF L ++ + Sbjct: 62 FEVCRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANIRR 120 >gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 234 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A++ E E K + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGG-IDLVLLDLMLPGID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 116 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 117 RRNQAAAQ 124 >gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597] gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564] gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564] gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597] Length = 235 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKD 125 Sbjct: 119 TDLAS 123 >gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] Length = 234 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 3 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVCREIRKNSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272] gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273] Length = 218 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLENDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ H + G + EA + EA + E + + +++D M + Sbjct: 1 MARILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKV-DLVIMDIMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R DV + L + + + + G GA+ +L+KPF+ L ++ L Sbjct: 60 GWELCRELR---DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALL 116 Query: 119 QMQK 122 + + Sbjct: 117 KRYR 120 >gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 253 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 6/132 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R++ + G+ V A EA E E P+ +V+D M Sbjct: 15 KILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETEN-PDLVVLDVMMPKLNGY 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L D I G GA+ +L KPF+ + L ++ + + Sbjct: 74 GVCQKIRTQSE---VPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRR 130 Query: 121 QKSKDENQFLDA 132 + + N+ + A Sbjct: 131 LRETNANRDVSA 142 >gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 234 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R V + G+ V AT+ E + E P+ +V+D + G+ Sbjct: 4 TILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEE-PDLIVLDLMLPGMDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +DVF+ L D +AG R GA+ +L KPF+ L + + + ++ Sbjct: 63 EITARLREK-SDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRR 121 Query: 123 SK 124 K Sbjct: 122 GK 123 >gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 227 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + GF V +A A E + P+ +V+D + G+ F Sbjct: 5 RILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHP-PDLVVLDLMIPGIDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V L + I G GA+ +++KPF+ L +R + + Sbjct: 64 EVCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAILRR 123 Query: 121 QKSKDENQFL 130 + + + Sbjct: 124 SATDATEERI 133 >gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 218 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLESDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] Length = 238 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ N + A A E E PN +++D + G+ Sbjct: 5 KILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFV-EFAPNLILLDVMLPGMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + L + + + G + GA+ +++KPF+ L + L + Sbjct: 64 QVCTEIRKQ---SNVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRR 120 Query: 121 QKSKDEN 127 S+ +N Sbjct: 121 CNSRTDN 127 >gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 226 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ H + G + EA + EA + E + + +++D M + Sbjct: 3 MARILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKV-DLVIMDIMMPEMD 61 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R DV + L + + + + G GA+ +L+KPF+ L ++ L Sbjct: 62 GWELCRELR---DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALL 118 Query: 119 QMQK 122 + + Sbjct: 119 KRYR 122 >gi|254413625|ref|ZP_05027395.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC 7420] gi|196179732|gb|EDX74726.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC 7420] Length = 379 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 3/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D ++ + + ++ G+ V A++ E E ++L P ++ D M + Sbjct: 1 MTQILIIDDDPAIQILLKRTLHNQGYDVTIASNGEEGLELV-QQLRPALVICDWIMPRMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + L + G AGA+ F+ KP L+ +R Sbjct: 60 GLEVCRQIKATPALSTTMFILLTSLGSVGDRVKGLDAGADDFICKPIEIAELQARVRSGL 119 Query: 119 QMQKSKDENQFLDAI 133 ++ + + Q + Sbjct: 120 RLHELSRDLQHQKQL 134 >gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKG-QALAVQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +D+ + L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio vulnificus CMCP6] gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus CMCP6] Length = 1129 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 4 LLLV-DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+V D + +V G+ V A+ + E E E P L++D M G+ Sbjct: 724 LLIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEK-PALLLLDIMMPGMSGY 782 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ ++ + L E + G AGAN +L KPFN++ L ++ Sbjct: 783 QVCHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHLMA 842 Query: 121 QKSKD---ENQFLDA 132 K++ EN L+A Sbjct: 843 SKAEARRLENNRLEA 857 >gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 235 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+++ + ++ R+ G+ V + E C KE P+ +++D + + Sbjct: 4 TILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKC-KETNPDLVLLDLMLPDIDGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 DVCKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVLRR 122 Query: 121 QKSKDEN 127 K++ E+ Sbjct: 123 SKNESED 129 >gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 228 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A S E E K + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGG-IDLVLLDLMLPGID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVL 116 Query: 119 QMQK 122 + + Sbjct: 117 RRNQ 120 >gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus ATCC 53653] gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus ATCC 53653] Length = 262 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V +V GF V A A + + P+ +V+D + G+ Sbjct: 9 RVLVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQW-PDLVVLDLMLPGMDGL 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V V L D + I G GA+ ++ KPF+ L + + + Sbjct: 68 DVCRALRGKGP---VPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRR 124 Query: 121 QK 122 + Sbjct: 125 GR 126 >gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] Length = 234 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 3 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271] Length = 218 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAGNGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus Tu4000] gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus Tu4000] Length = 242 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V ++ + G++V A A P+ +V+D + G+ Sbjct: 13 RVLVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHW-PDLVVLDLMLPGMDGL 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V L D + I G GA+ ++ KPF+ L + + + + Sbjct: 72 EVCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSR 130 >gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp. subtilis str. 168] gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis] gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis] gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp. subtilis str. 168] Length = 235 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + G+ V A EA E E EL P+ +++D + Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQ 121 Q Sbjct: 119 RQ 120 >gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia sp. R2A130] gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia sp. R2A130] Length = 233 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ +++ + GF V + + E P +V+D + G + Sbjct: 8 KILVVEDEPSQQELLVYNLEKAGFRVVATGDGEDGVAAAQDEN-PALIVLDWMLPGLSGI 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + + L + + GA+ +++KP++ L +R + Sbjct: 67 EVCRQLRRDADTRQIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRR 126 Query: 121 QKSKDENQFLD 131 + + L+ Sbjct: 127 ANPAEVGEMLE 137 >gi|299148439|ref|ZP_07041501.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298513200|gb|EFI37087.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1446 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ + + + + V A++ E + + LP+ ++ D M + Sbjct: 1188 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1245 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1246 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305 Query: 121 QKSKDE---NQFLD 131 +K+ E N+ ++ Sbjct: 1306 RKALQELYMNRLME 1319 >gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 235 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A + EA + E E P+ V+D + + F Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAE-EFQPDLAVLDVMLPDMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L E I G G + ++ KPF+ + + +R + + Sbjct: 68 TVTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127 Query: 123 SKDEN 127 S D++ Sbjct: 128 SLDDD 132 >gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 248 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E E P+ +V+D M Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFE-NTAPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + + Sbjct: 126 VEKES 130 >gi|309792798|ref|ZP_07687241.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308225162|gb|EFO78947.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 238 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + R G V A + EA + ++ +P+ +++D M + Sbjct: 7 KLVLVVDDEPRMINFMRLNLELEGMRVATAANGREALDRA-RDDMPDVILLDVMMPVMDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +R++ + V + L + + E + G GA+ ++ KPF+ L +R + + Sbjct: 66 F-EALRRLRQFSQVPILMLTAKDEEEDRVRGLELGADDYIGKPFSHRELISRIRAVLRRH 124 >gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6] gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6] Length = 235 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 >gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16] gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator PhoB, OmpR-family [Ralstonia eutropha H16] Length = 235 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G A + +A ++LP+ +++D + G Sbjct: 4 SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGA 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 NFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + ++ + F GF V A E +K PN +++D + G Sbjct: 1 MKKVLVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDK-YNPNVVILDLMLPGKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ ++V + L D I G GA+ ++ KPF+ + L + + Sbjct: 60 GYEVCREIRK---TSNVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVL 116 Query: 119 QMQKS 123 + ++ Sbjct: 117 RRTEA 121 >gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ R GF V EA EA + + +++D M + Sbjct: 5 KILVVDDESRMRKLVRDFLTKKGFTVIEAGDGEEAVDKFFEVKDIALIILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + V + L + D + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREIRQ---YSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 + ++A Sbjct: 122 SNVLAADDTMEA 133 >gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 116 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 117 RRNQATAQ 124 >gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ +R++ G+ EA SV EA E E +P+ +++D + G Sbjct: 13 KRILVVEDEQAIREMIGFALRREGYHFIEAGSVAEA-EDAIAEQVPDLMLVDWMLPGTSG 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +EF+ H ++ L DV V L + + I G AGA+ ++ KPF+ L +R + + Sbjct: 72 VEFVRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAVLR 131 Query: 120 MQKSKDENQFLD 131 S D Q L+ Sbjct: 132 RIGSAD-GQLLE 142 >gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394] gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782] gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394] gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + A EA E+E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEK-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ G+ A + E + P+ +++D + + Sbjct: 3 QKVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELF-RSFHPDLVLLDIMLPVMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ V L + + E + G GA+ +++KPF + + + + + Sbjct: 62 WSVLKKIRESDK---TPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLR 118 Query: 120 MQKSKDE 126 +++E Sbjct: 119 RFGAEEE 125 >gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LLLV+ + ++ + F G+ V EA E P+ +++D + G + Sbjct: 5 KLLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEAL-LLAAEDTPDLVLLDWMIGGTSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + L D + I G GA+ ++ KPF+ L + + + Sbjct: 64 EVCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRR 123 Query: 121 QK 122 + Sbjct: 124 VR 125 >gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 250 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 10/129 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ ++R++ G+ + A A EF + E + +V+D + Sbjct: 20 RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G V + L + + G GA+ +L KPF+ L Sbjct: 80 PQINGLDICRLLRHQ--GNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQKS 123 R L + Q+ Sbjct: 138 RALLRRQRL 146 >gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 240 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGVL 60 +LL++ + ++ + V A + E + KE + +++D + + Sbjct: 3 KQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMD 62 Query: 61 E--FIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R + V + L + D + G GA+ ++ KPF L +R Sbjct: 63 GMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRA 122 Query: 117 LPQMQKSKDE 126 + + + ++ Sbjct: 123 VLRRHEQPNQ 132 >gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A S EA E ++E + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ V V L + I G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRSLRQRSK---VPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGDAEE 124 >gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] Length = 255 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + G+ VF A EA E P+ +++D + + F Sbjct: 25 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEK-PDLVILDVMLPDMDGF 83 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + +L + D + G +AG + ++ KPF E + + + + K Sbjct: 84 TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 143 Query: 123 SKDENQFL 130 Q L Sbjct: 144 HGSSEQPL 151 >gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] Length = 237 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +++ +R++ + G+ V+ A + E ++ P+ +V+D M Sbjct: 3 TRIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLF-QQYQPDLIVLDLMMPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++V + L + I G GA+ ++ KPF+ L ++ L + Sbjct: 62 WELCEEIRQH---SNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1358 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL D + +R L G+ V A + P+ ++ D M Sbjct: 688 RILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHP-PHLVLTDVMMPRLDGF 746 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ V V L E + G + GA+ +L+KPF+ + L + ++ Sbjct: 747 GLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARLEI 806 Query: 121 QKSKDE----NQFLDA 132 +++ E + L A Sbjct: 807 ARARSEAALAQERLHA 822 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LLV+ S +R + G V A E E L P+ +ID + G Sbjct: 1211 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLA-LRPDVALIDVGLPGIDG 1269 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 E VR P G +++ L E RAG + L KP N + L Sbjct: 1270 YEVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1320 >gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + GF EA A E P+ +++D + G Sbjct: 3 RKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMV-EPYPDMVLLDWMLPGGSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +Q + + L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQIAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIR 121 Query: 120 MQKSKDENQFLD 131 + +D Sbjct: 122 RVSPTSLEEAID 133 >gi|238794386|ref|ZP_04637997.1| Transcriptional regulator in 2-component system [Yersinia intermedia ATCC 29909] gi|238726287|gb|EEQ17830.1| Transcriptional regulator in 2-component system [Yersinia intermedia ATCC 29909] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF V A +A + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLL--DNSIDLLLLDIMMPRKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQFLD 131 + ++ Q +D Sbjct: 116 RRSNWSEQQQNVD 128 >gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R++ R G++V EA A +E P+ +V+D + G+ Sbjct: 4 KILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRE-RPDLIVLDLMLPGMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + L + + I G GA+ +++KPF+ L ++ + + Sbjct: 63 DVCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVLRR 122 Query: 121 QK 122 K Sbjct: 123 SK 124 >gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ + G+ V A E E+ L P+ +V+D + G+ Sbjct: 5 TRILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFER-LRPDVVVLDIMLPGMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G V L + GA+ +L KPF E L MR + + Sbjct: 64 VGVLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRRV 123 Query: 122 KSKDENQ 128 + ++ + Sbjct: 124 EGEEVLR 130 >gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + G+ A EA E P+ +V+D + Sbjct: 1 MKKILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESF-ASYQPDLIVLDLMLPKKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + V + L + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCREIRK---TSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANL 116 Query: 119 QMQK 122 + + Sbjct: 117 RRSQ 120 >gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 3 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ R GF V +A A E P+ +++D + + Sbjct: 5 TILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARA-WTPDVVILDIMLPVLDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +D ++ L + + G GA+ +L KPF L +R L + Sbjct: 64 AVCRRLR---TFSDAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRR 120 Query: 121 QKSKD 125 + + Sbjct: 121 PRHTE 125 >gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 259 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E P+ +V+D M Sbjct: 21 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPT-CTPDLVVLDVMMPKLDGY 79 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R L + Sbjct: 80 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 136 Query: 121 QKSKD 125 + + Sbjct: 137 VEKEQ 141 >gi|284006387|emb|CBA71623.1| two-component system, OmpR family, phosphate regulon response regulator [Arsenophonus nasoniae] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P +++D + G Sbjct: 8 RRILVVEDETAIREMVCFVLEQNGFQTVEADDYDSAIAQLI-EPYPALILLDWMIPGGSG 66 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 IAH+++ L ++ + L + E + G GA+ +L KPF+ + L + + + Sbjct: 67 IQLIAHMKRDQLTRNIPIMMLTARGEEEDRVRGLEIGADDYLTKPFSPKELIARVNAILR 126 Query: 120 MQKSKDENQFLD 131 + + ++ Sbjct: 127 RVSAMASDNVIE 138 >gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match) [Frankia alni ACN14a] Length = 358 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A +E P+ +V+D + + Sbjct: 20 RVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLA-REFRPDAVVLDIMLPDMDGL 78 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L E +AG AG + ++ KPF+ E L +R L + Sbjct: 79 EVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAA 138 Query: 123 SKDE 126 E Sbjct: 139 RTTE 142 >gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA E E E+ P+ +++D + Sbjct: 3 KKILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVE-EVKPDLILLDIMLPQRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter alkaliphilus HTCC2654] gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales bacterium HTCC2654] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ R++ R+ G+ V A + +A E E+ P+ +++D + G +E Sbjct: 8 VLLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVE-EIGPDLILLDWMLPGVSGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+ TD+ V L D + G GA+ +++KPF+ + L +R + Sbjct: 67 ICRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRRT 126 Query: 122 KSKDENQFLD 131 + Q L Sbjct: 127 RPASVGQQLA 136 >gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942] gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + G+ V A EA E E E+ P+ +++D + Sbjct: 4 KKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVE-EIQPDLILLDIMLPNKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQ 121 Q Sbjct: 120 RQ 121 >gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338] gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ A EA E+E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEEN-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TENIE 123 >gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 245 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + ++LP+ +++D + V Sbjct: 2 MPRILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKG-QALAIQMLPDLIMLDLMLPRVD 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V L + + G +GA+ +L KPF E + +R L Sbjct: 61 GFTVCQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALL 120 Query: 119 QM 120 + Sbjct: 121 RR 122 >gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + + G+ V A EA + E P+ +++D+ + Sbjct: 1 MSKVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDEN-PDLVLLDQMLPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R +DV V + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GIEVLRQIRSK---SDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 116 Query: 119 QMQKSKDE 126 + +KS + Sbjct: 117 RSRKSVSQ 124 >gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens Pf-5] gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens Pf-5] gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCMEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 7/138 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEK-PDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKS-----KDENQFLDAI 133 + ++E+ L ++ Sbjct: 119 TELVAVDNQEEDTKLQSL 136 >gi|304398989|ref|ZP_07380858.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304353449|gb|EFM17827.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A+ +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLI--DNSIDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRSNWSEQQQ 125 >gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 240 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++++ + GF V A +A +E P+ +++D + G+ Sbjct: 12 TILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFREN-PDLVLLDLMLPGLDGG 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ P + + L D +++ AG GA+ ++ KPF+ + L ++ + Sbjct: 71 EVCKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALRR 130 Query: 121 QK 122 + Sbjct: 131 GR 132 >gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 1526 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + RKV + + + V E S EA + + +++D M + E Sbjct: 1146 ILIVDDEPVNRKVLANYLSLKYYTVHEVRSGMEAITYVRNGPKVDLILLDIMMPKMSGYE 1205 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L ++ G +GAN F+ KP +E L + Q++ Sbjct: 1206 ACKQLRQQYSANELPIILLTARSQVSDLVTGFNSGANDFITKPIAKEELLARVHTHLQLR 1265 >gi|300865288|ref|ZP_07110102.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300336761|emb|CBN55252.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 403 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + V + F V A A E E + P+ +++D M G+ F Sbjct: 11 ILIVDDNQTNLDVLFDFLRNCNFKVLVALDGESAIEQLEY-VRPDLILLDVMMPGIDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 + ++ +P D+ V ++ D + G ++GA ++ KPF E + ++ Sbjct: 70 TCSRLKAIPATKDIPVIFMTALSDTVNKVRGFQSGAVDYITKPFQHEEVLSRIQTHLTIC 129 Query: 120 --MQKSKDENQFLDAI 133 +K +++N+ L A+ Sbjct: 130 KLQKKLQEKNEQLAAL 145 >gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD VR V R GF V A + E P+ +V+D M G L Sbjct: 7 RVLVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHE-PDLVVLDVMMPGINGL 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ+ + V + L + E IAG + GA+ ++ KPF+ + L + + + Sbjct: 66 EVCKRLRQV---SQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRR 122 Query: 121 QKS 123 + Sbjct: 123 ARM 125 >gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R++ + G+ +A E E + P+ +++D + + Sbjct: 7 TILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELA-RSRKPDLILLDLMLPKMDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + L + I G GA+ +++KPFN L +R + + Sbjct: 66 AVCRELERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAILRR 125 Query: 121 Q 121 Q Sbjct: 126 Q 126 >gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 >gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ R G+ EA A + +++D M + Sbjct: 1 MAKILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGY-DLVILDLMMPFMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + + V L + +AG GA+ +++KPF+ L ++ + Sbjct: 60 GMSCLREMRTRRI--NTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVL 117 Query: 119 QMQKSKDE 126 + E Sbjct: 118 NRTMPRTE 125 >gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + G+ V A+ EA P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVST-PDLIVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L + I G GA+ ++ KPF+ + L + + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRR 122 >gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 218 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAEDGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 256 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R G+ V AT EA E++ P+ +++D M + Sbjct: 18 RVLVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERD-RPDLVLLDIMMPRMDGL 76 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A R G V V L + G GA+ +L KPF + L +R L Sbjct: 77 TAVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALL 132 >gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus] gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 237 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+++ +R+V + + V+ A + E E P+ +++D M Sbjct: 3 KRILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTH-QPDLIILDLMMPQKNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++V + L + + I G GA+ +L KPF+ L ++ + + Sbjct: 62 WELCEEIRQK---SNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIFR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|329956866|ref|ZP_08297434.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328523623|gb|EGF50715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1474 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R ++ ++ + V A + E + + LP+ ++ D M + Sbjct: 1218 SILVVEDNKELRTFLKNSLSEH-YTVITAANGKEGLQHAI-DDLPDLIISDVMMPVMDGL 1275 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1276 EMVKQIKENSAICHIPIIILSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIITLLRQ 1335 Query: 121 QKSKDEN 127 +KS E Sbjct: 1336 RKSLQEM 1342 >gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] Length = 1140 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + +V + + + V +AT+ EA E E P+ +++D M + Sbjct: 730 KILIVDDEPVNIQVLINNLSVLKYEVTQATNGFEALEIIENGFRPDLILLDVMMPRMSGY 789 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ ++ + L + ++ G +GAN +L KPF++ L ++ ++ Sbjct: 790 EVCQILREKFPAIELPIVMLTAKNQVTDLVEGFNSGANDYLSKPFSKNELLARIKTHIRL 849 Query: 121 QK 122 K Sbjct: 850 AK 851 >gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 3 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|160886917|ref|ZP_02067920.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483] gi|156107328|gb|EDO09073.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483] Length = 1446 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ + + + + V A++ E + + LP+ ++ D M + Sbjct: 1188 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1245 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1246 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305 Query: 121 QKSKDE---NQFLD 131 +K+ E N+ ++ Sbjct: 1306 RKALQELYMNRLME 1319 >gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVL 116 Query: 119 QMQKSKDE 126 + + E Sbjct: 117 RRNQMVAE 124 >gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M S+L+VD + ++ + G+ FEA S +A E K + +++D M Sbjct: 1 MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEIL-KHNKVDLVILDIMMSDKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++ V L + + I G GA+ ++ KPF+ + L ++ L Sbjct: 60 GYEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119 Query: 119 QMQKSKD 125 + +S Sbjct: 120 RRVESLK 126 >gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] Length = 242 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ + +A E P+ +++D + G+ Sbjct: 15 QKILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFE-HFRPDLILLDLMLPGMDG 73 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 74 YQVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLR 130 Query: 120 M 120 Sbjct: 131 R 131 >gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + + G+ V A E E E + P+ +++D + + Sbjct: 3 NKVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESD-QPDLIILDLMLPKIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 62 LEVAKRVRAKH-NTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120 Query: 122 KSKD 125 + + Sbjct: 121 DAAN 124 >gi|237721203|ref|ZP_04551684.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448999|gb|EEO54790.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1446 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ + + + + V A++ E + + LP+ ++ D M + Sbjct: 1188 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1245 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1246 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305 Query: 121 QKSKDE---NQFLD 131 +K+ E N+ ++ Sbjct: 1306 RKALQELYMNRLME 1319 >gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 238 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +R++ R G+ + EA A + + +++D + G+ Sbjct: 6 NRILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDY-SIILLDVMLPGMDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 65 IEVCTRLRQ---TKSTPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + ++ + G+ VF A + ++E + LV+D + G Sbjct: 4 KKILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEED-IDLLVLDLMLPEIGG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ +R +D+ + L + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 LDICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILR 122 Query: 120 MQKSKDE 126 S + Sbjct: 123 RTGSSGQ 129 >gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 + +VD + ++ GF V + A + + P +++D + G+ Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNP-PRLVILDIMLPGIDGI 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ + V + L + D + GA+ +++KPF+ + L ++ + + Sbjct: 65 ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121 Query: 121 QKSKDENQF 129 + + + + Sbjct: 122 YEPESDERR 130 >gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804] gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ ++++ + G V A +A E LP+ +++D + G L Sbjct: 4 TILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAE-LPDLILLDWMLPGTSGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V V L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 TLARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + + +D Sbjct: 123 RAPQLTDDIID 133 >gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + A EA E+E P+ +++D + + Sbjct: 4 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEK-PDLIILDLMLPELD 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 121 Query: 121 QKSKD 125 ++ + Sbjct: 122 TETIE 126 >gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 243 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R GF V A A + +V+D M G Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGK-ALNRILLRETVDLIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 123 SKD 125 ++ Sbjct: 129 PQE 131 >gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169] gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1] gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1] gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1] gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1] gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7] gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8] gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1] gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72] gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E] Length = 244 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D G++V A + + + + +V+D + Sbjct: 11 RILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQ-MDKLIAREMFSLIVLDLMLPDEDGI 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + L + IAG AGA+ +L KPFN + L ++ + + Q Sbjct: 70 AICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQN 129 Query: 123 SK 124 + Sbjct: 130 RE 131 >gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 116 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 117 RRNQATAQ 124 >gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ GF A + E+ + P +++D + + Sbjct: 3 QKVLIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYF-RSFQPALVLLDIMLPVMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++++ + V L + + E + G +GA+ +++KPF + + + + + Sbjct: 62 WTV-LKKIREESATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRT 120 Query: 122 KSKDENQ 128 ++E + Sbjct: 121 GQEEEQE 127 >gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842] gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 4 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQKS 123 + Sbjct: 120 RHQQ 123 >gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + A EA E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEK-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|260171744|ref|ZP_05758156.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315920056|ref|ZP_07916296.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693931|gb|EFS30766.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1446 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ + + + + V A++ E + + LP+ ++ D M + Sbjct: 1188 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1245 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1246 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305 Query: 121 QKSKDE---NQFLD 131 +K+ E N+ ++ Sbjct: 1306 RKALQELYMNRLME 1319 >gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032] gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032] gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + G+ V A EA E E E+ P+ +++D + Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVE-EIKPDIILLDIMLPNKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQ 121 Q Sbjct: 119 RQ 120 >gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC1989] gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC1989] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R + R + EA A + P+ +++D + G Sbjct: 5 KTILIVDDESAIRDMLRVALEMADYHCLEAADTQSAHALIIDQK-PSLILLDWMLPGTSG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +++ D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 IDLARRLKKDEFTADIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 123 Query: 120 MQKSKDENQFLD 131 + + ++ Sbjct: 124 RTEGISAAELIE 135 >gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + ++ GF V + A + +E P +++D + G+ Sbjct: 5 RKIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKI-QEKPPKLVILDIMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ + V + L + D + GA+ +++KPF+ + L ++ + + Sbjct: 64 IALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLR 120 Query: 120 MQKSKDENQF 129 + + E + Sbjct: 121 RYEPESEEKQ 130 >gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601] Length = 247 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + + + + G+ A EA E E P+ +V+D + Sbjct: 4 TRILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIE-ESKPDLIVLDWMLPKVSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R P + + L + + G GA+ +++KPF+ L ++ + + Sbjct: 63 IEVCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLR 122 Query: 120 MQK 122 + Sbjct: 123 RAR 125 >gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 64/129 (49%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M+ +L+V+ +R++ G+ V E+ + +A +E+ P+ +++D M G Sbjct: 1 MNKILIVEDEDALRELIAFNLTKAGYDVIESENANDAL-IFIEEITPDLIILDIMMPGLK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + +++ P +++ V + ++ G GA+ ++ KPF+ + L ++ L Sbjct: 60 GTQLLQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILL 119 Query: 119 QMQKSKDEN 127 + ++ K EN Sbjct: 120 RKKQEKTEN 128 >gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+VD + + + F G+ V A EA K+ P+ +++D + G Sbjct: 1 MAKLLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEAL-VVVKDERPDLILLDVMLPGRD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ VRQ DV + L + + G GA+ ++ KPF+ L ++ Sbjct: 60 GMDVCRTVRQ---TYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHL 116 Query: 119 QMQKSKDENQ 128 + +SK E + Sbjct: 117 RRNRSKVEEK 126 >gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea] Length = 247 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + + G+ V A+ EA KE PN +V+D M Sbjct: 12 TILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEH-PNLIVLDIMMPKLDGF 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +L+KPF+ + L ++ + + Sbjct: 71 GVCQEIRKE---SDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRR 127 >gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + + R G+ V AT+ E P+ +V+D M V F Sbjct: 4 TILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAE-PDLVVLDVMMPQVDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G+ V V L + + E + G GA+ +L+KPF E L +R L + + Sbjct: 63 EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122 Query: 123 SKDEN 127 + +N Sbjct: 123 EQQDN 127 >gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7] gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7] Length = 223 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R++ N GF V EA++ EA E E E + +ID M + Sbjct: 1 MKAKVLVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENE-YIDLGIIDVMMPVM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F V + DV V L + + + + G GA+ +++KPF+ L +R + + Sbjct: 60 DGF-ELVENLKEFKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1014 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD V L G+ TS EA + + P+ +++D M G+ Sbjct: 20 ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRV-TQAQPDLILLDLMMPGMDGLE 78 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q P D+ V +L + + ++ GA ++ KPF+ L ++ +++ Sbjct: 79 VCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELK 138 Query: 122 KSKD 125 +++D Sbjct: 139 QTRD 142 Score = 124 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL + + I ++V + L G+ V + EA K + +++D M + Sbjct: 741 TILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDY-DVVLMDVEMPEMDGL 799 Query: 63 I--AHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 H+R+ ++ + + +G N ++ KP E L+ A++ Sbjct: 800 TATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQVAAT 859 Query: 120 MQKSKDENQF 129 +S +++ Sbjct: 860 ALQSTSQDRM 869 >gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ R GF V EA EA + +++D + G+ Sbjct: 4 TRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAY-ALIILDLMLPGMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A +RQ ++V + L D + G GA+ +++KPF+ L ++ + + Sbjct: 63 RDVCAQIRQH---SNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLK 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD +R++ R + + EA++ EA E + + +++D M G+ Sbjct: 6 TLLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEY-DLILLDVMMPGMDGV 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V L + + + G GA+ +++KPF+ + ++ L + Sbjct: 65 EMCQELRKK---KATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRR 121 Query: 121 QKSKD 125 + Sbjct: 122 ASATK 126 >gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D +R + + GF V E + EA + E + +++D + GV Sbjct: 1 MPKILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHY-DLVLLDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V V L D + G GA+ +++KPF+ + ++ + Sbjct: 60 GLTICKEIRK---FSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp. subtilis str. 168] gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp. subtilis str. SMY] gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5] gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto BEST195] gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus subtilis subsp. spizizenii str. W23] gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5] Length = 236 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + G+ V A EA E E EL P+ +++D + Sbjct: 4 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQ 121 Q Sbjct: 120 RQ 121 >gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 246 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKG-QALAVQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +D+ + + + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] Length = 227 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +R + + + G+ EA + A E P+ +++D G Sbjct: 4 RILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQL-HEPYPDLILLDWMFPGGSGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++H++Q + + V L + + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 KLLSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVMRR 122 Query: 121 QKSKDENQFLD 131 + L Sbjct: 123 VNPTSLDDELS 133 >gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580] gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580] gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] Length = 235 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + G+ V A EA + E +L P+ +++D + Sbjct: 3 KKILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVE-DLNPDMILLDIMLPNKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKSKDENQ 128 Q + + Sbjct: 119 RQNTAAPAE 127 >gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++RK+ G++ EA +A E + +++D + Sbjct: 4 KRILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVMLPEYDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + + G GA+ ++ KPF+ L + + + Sbjct: 64 FTVCREIRKKSK---VPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLR 120 Query: 120 MQKSKDENQFLD 131 S+D+ + L Sbjct: 121 RANSEDKGKELK 132 >gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 235 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + + G+ V A EA + E P+ +++D+ + Sbjct: 1 MSKVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDEN-PDLVLLDQMLPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R +DV V + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GIEVLRQIRSK---SDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 116 Query: 119 QMQKSKDE 126 + +KS + Sbjct: 117 RSRKSVSQ 124 >gi|323496468|ref|ZP_08101526.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] gi|323318745|gb|EGA71698.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] Length = 235 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ GF V A + + + P+ +++D M G Sbjct: 4 KRILVVDDNQELREALSDYLGRAGFEVLGAENGRAMWQTL-QHTTPDLIILDIMMPGEDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F RQ+ + + + L + +AG GA+ ++ K F+ L ++ + + Sbjct: 63 FCLC-RQLRQDSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRS 121 Query: 122 KSKDENQF 129 + ++ Q Sbjct: 122 QPDNQIQL 129 >gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 244 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ HI+R++ + + G+ V EA + EA E+ + + +++D M + Sbjct: 20 KTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEV-HLVILDIMMPELDG 78 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ +++ V L D + + G GA+ ++ KPF+ L + L + Sbjct: 79 WSVCRRIRK---TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLE 135 Query: 120 MQKSKDEN 127 + + +E Sbjct: 136 SRYAIEEE 143 >gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17025] Length = 230 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ R+V + GF V +A + EA +E P+ +V+D + +E Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGTGDEAL-MLVEETGPDVIVLDWMLPSVSGIE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P V + L + + G GA+ +++KP++ L +R + Sbjct: 68 VCRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127 Query: 122 K 122 + Sbjct: 128 R 128 >gi|329576541|gb|EGG58048.1| putative transcriptional regulatory protein WalR [Enterococcus faecalis TX1467] Length = 159 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ ++ G+ VF A EA E E E+ P+ +++D + + Sbjct: 1 MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVE-EVEPDLIILDLMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118 >gi|302342093|ref|YP_003806622.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] gi|301638706|gb|ADK84028.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] Length = 518 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD I ++ LF+ G A+ A E +E +P+ +++D M G+ Sbjct: 13 RILIVDDEPINIEIMSELFSLHGAETISASDGATALELARRE-MPDLVLLDVMMPGMNGY 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V + + I G AGA+ FL KP + L R L ++ Sbjct: 72 EVCRRLKADEVTRRLPVVMVTGLGQIDDKIKGLEAGADDFLSKPVHMAELVTRTRSLLRV 131 Query: 121 QKSKDENQ 128 ++ D+ + Sbjct: 132 KELNDDLE 139 >gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 3 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] Length = 231 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 4/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ +R++ G+ + EA A + ++ P +++D + G Sbjct: 1 MTKILVVEDESAIREMISLFLTQQGYDIIEAADYQSAVKKLVEK--PQLILLDWMLPGRS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++FI +++ ++ V L + E I G GA+ ++ KPF+ + L + + Sbjct: 59 GIQFIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAML 118 Query: 119 QMQKSKDEN 127 + + +N Sbjct: 119 RRVYEQSQN 127 >gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii DJ] gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii DJ] Length = 229 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAIIVDRRPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L T + + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E E P+ +++D + G Sbjct: 3 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKA-TEEQPDMVLLDIMLPGKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family [Kangiella koreensis DSM 16069] gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family [Kangiella koreensis DSM 16069] Length = 230 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+++ +R++ G+ V +A + ++ +P+ +++D + G + Sbjct: 4 KVLILEDERDIREMLAFCMQQAGYQVEQAATAERVFGLLKEGFVPDIMLVDWMLPGASGV 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ DV V L + + + G AGA+ +++KPF+ L ++ + + Sbjct: 64 ELTKKLKKDQKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAVLRR 123 >gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 227 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 + +VD + ++ GF V + A + + P +++D + G+ Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNP-PRLVILDIMLPGIDGI 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ + V + L + D + GA+ +++KPF+ + L ++ + + Sbjct: 65 ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121 Query: 121 QKSKDENQF 129 + + + + Sbjct: 122 YEPESDERR 130 >gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 236 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + K+ + GF + A + + + P+ +++D + G+ Sbjct: 3 ILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQ-QPDVIILDLMLPGLDGLE 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +RQ P D ++ L + + + G GA+ +L+KPF+ L +R L + Sbjct: 62 VCARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALLRR 120 >gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 236 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ A EA E+E P+ +++D + + Sbjct: 1 MKKVLIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFEEEK-PDLVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 218 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 235 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A EA + E E P+ +V+D + + Sbjct: 3 KKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESES-PDLIVLDLMLPKIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +Q+ + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 62 LEVA-KQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120 Query: 122 KS 123 + Sbjct: 121 DA 122 >gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 239 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V A A E K+ P+ +++D + + Sbjct: 5 KILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMV-KDAPPDLILLDIMLPQMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + L + + I G GA+ ++ KPF+ + ++ + Sbjct: 64 EVCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLRA 123 Query: 121 QKSKDENQFL 130 + + + Sbjct: 124 LRILKAEKAM 133 >gi|330938965|gb|EGH42452.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330975743|gb|EGH75809.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 245 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + R E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|302186956|ref|ZP_07263629.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 245 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + R E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 234 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 3 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 234 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 3 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 239 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 54/131 (41%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + R D G+ V A S E++ + LV+D + GV Sbjct: 4 KRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V + + + I G GA+ +L KPF+ L +R L + Sbjct: 64 LQVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRA 123 Query: 122 KSKDENQFLDA 132 ++ ++ +DA Sbjct: 124 EAMAQSARIDA 134 >gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 245 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAISELVTINLEMAGYDVSQAMDGIKG-QALALQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +D+ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|238063933|ref|ZP_04608642.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237885744|gb|EEP74572.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 318 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + + GF V A+ EA E E++ P+ V+D M LE Sbjct: 11 ILVVDDDADIARFVEFNLRLHGFEVIHASDGQEALEVIERQ-RPDLAVVDLMMPRIDGLE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P+ + + V L + + G AGA+ +L+KPF+ L + + Sbjct: 70 LTRRLRANPMTSALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRRN 129 Query: 122 KSKDE 126 K E Sbjct: 130 KEFRE 134 >gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] Length = 236 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + E E+ P+ +++D + Sbjct: 3 KKILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAE-EIKPDLVLLDIMLPNRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREIRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQK 122 + Sbjct: 119 RHQ 121 >gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555] gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016] gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM 555] gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + +V + G+ V A A E E P+ +++D + + Sbjct: 7 KILIVDDDENICEVIKMYVESAGYEVQVANDGKSA-ETTFLEYKPDLVILDIMLPNIDGI 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V L + + + G GA+ +++KPF + + ++ + + Sbjct: 66 DVLKWIRKDYE---TPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRR 122 Query: 121 QKSKDENQ 128 +EN+ Sbjct: 123 YSVDNENK 130 >gi|17231412|ref|NP_487960.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133054|dbj|BAB75619.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 414 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R L G+ V EA S A + ++ P+ +++D M + F Sbjct: 95 KVLVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQ-QPDLILLDVMMPEMDGF 153 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V ++ D I G GA+ FL KPF+R L ++ L Q Sbjct: 154 EVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLVQQ 213 Query: 121 QKSKDEN 127 ++ ++ Sbjct: 214 KRLNEDL 220 >gi|296133006|ref|YP_003640253.1| response regulator receiver modulated diguanylate cyclase [Thermincola sp. JR] gi|296031584|gb|ADG82352.1| response regulator receiver modulated diguanylate cyclase [Thermincola potens JR] Length = 314 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + ++ + GF+V+ A A E ++ P+ +++D + + Sbjct: 7 QRILVIDDDKFMVRIIKDCLEKVGFIVYGAEDFSSAMELIY-QMTPDLILLDVVLPKMNG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + V + + + E +AG AGA+ ++ KPF+ L ++ + Sbjct: 66 FEICRLLRNDTRTSHVPIIMITSKAMTEDKVAGLEAGADDYITKPFDPLELVARVKTHLR 125 Query: 120 MQKSKD 125 K + Sbjct: 126 RAKQEK 131 >gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 251 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ R + + EA + EA E + +++D M G Sbjct: 18 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAK-GLEANYDLILLDLMMPGTDG 76 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + L + + + G AG + +++KPF+ + ++ L + Sbjct: 77 IEVCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 133 Query: 120 M 120 Sbjct: 134 R 134 >gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] Length = 232 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ ++++ + G V A +A+ E LP+ +++D + G Sbjct: 4 TILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAE-LPDLILLDWMLPGTSGL 62 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V V L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 AMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + + +D Sbjct: 123 RAPQLTDDVID 133 >gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + + + G+ V A E +++ P+ ++ D M + Sbjct: 12 TILLVDDDPNLVLLVKDYLEMQGYRVLTAAHGNEGLAMLQQQT-PDLVICDVMMPQMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F++ VRQ + + V +L + I G + G + +L+KPF E L ++ L + Sbjct: 71 SFVSAVRQQTHLSWLPVLFLSAKGQTHDRIKGLQTGGDVYLVKPFEPEELLAQIQALLKQ 130 Query: 121 QKSKDENQFLDAI 133 E Q A+ Sbjct: 131 TARLREAQGRQAL 143 >gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 238 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ + G+ + EA A + +++D + G+ Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMA-AGKDYDLIMLDVMLPGIDGV 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ+ V L + + + G AGA+ +++KPF+ + + ++ + + Sbjct: 66 EVCSRLRQV---KATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRR 122 Query: 121 QKSKD 125 + Sbjct: 123 SSATA 127 >gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ HI+R++ + + G+ V EA + EA E+ + + +++D M + Sbjct: 3 KTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEV-HLVILDIMMPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ +++ V L D + + G GA+ ++ KPF+ L + L + Sbjct: 62 WSVCRRIRK---TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 + + +E Sbjct: 119 SRYAIEEE 126 >gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] Length = 229 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD ++ K R G+ V A EA + KE + +++D + Sbjct: 3 RRVLVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLA-KENAYDIILLDVMLPKYDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ +DV + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQQIRE---YSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDENQ 128 +D+NQ Sbjct: 119 RVSKRDKNQ 127 >gi|186683295|ref|YP_001866491.1| response regulator receiver protein [Nostoc punctiforme PCC 73102] gi|186465747|gb|ACC81548.1| response regulator receiver protein [Nostoc punctiforme PCC 73102] Length = 125 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + G+ V A A + K+ +P+ +++D + Sbjct: 1 MPHVLLVDDEAALCESLTYTLQKEGYTVTTAADGHSAIKQFHKQ-VPDVILLDLMLPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R ++V + L + + I G AGA+ ++ KPFN L ++ + Sbjct: 60 GMEVCWRIRA---FSNVPIVMLTAKDEDIDKIWGLEAGADDYITKPFNTRELLARIKAVL 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 RRRSGEQ 123 >gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIV-DRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|330950929|gb|EGH51189.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 245 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + R E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 246 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAISELVSINLEMAGYDVNQAEDGIKG-QALAVQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +D+ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 235 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 2 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGLD 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 61 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVL 117 Query: 119 QMQKSKDE 126 + + E Sbjct: 118 RRNQMVAE 125 >gi|317050079|ref|YP_004117727.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316951696|gb|ADU71171.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 232 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A+ +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFEVMVASDGEQALNLL--DNTVDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQF 129 + ++ Q Sbjct: 116 RRSNWSEQQQQ 126 >gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] Length = 233 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F +A + P+ +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDF-ASFQPDLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + + G GA+ +++KPF+ + L +R + + Sbjct: 64 YQVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLR 120 Query: 120 MQKSKD 125 K + Sbjct: 121 RFKVRQ 126 >gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ GF A A E P+ +V+D + + Sbjct: 3 QRILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSE-RPDLMVLDLMLPDIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R P + + L VD I G GA+ ++ KPFN + +R + + Sbjct: 62 ADLTRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 235 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 2/131 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + GF V A + + +E + +++D + G+ F Sbjct: 7 RILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEE-IDLVILDVMLPGIDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + +++ V L + + G GA+ ++ KPF+ L ++ + + + Sbjct: 66 -EVLRALRRHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRAR 124 Query: 123 SKDENQFLDAI 133 E Q D + Sbjct: 125 RSAEPQDQDTL 135 >gi|269104854|ref|ZP_06157550.1| putative DNA-binding response regulator [Photobacterium damselae subsp. damselae CIP 102761] gi|268161494|gb|EEZ39991.1| putative DNA-binding response regulator [Photobacterium damselae subsp. damselae CIP 102761] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ GF V A E + P+ +++D M G Sbjct: 5 KKVLVVDDDQEIRELLDEYLTKSGFHVVTAAEGEEMKRKLAAGE-PDLILLDVMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H+R+ +DV + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 64 FTLCQHIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLR 120 Query: 120 MQKSKDENQ 128 K + Q Sbjct: 121 RVKPTETQQ 129 >gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 242 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A EA E E P+ +V+D + + Sbjct: 3 KKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASE-QPDLIVLDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRIQKMMF--PILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RAQQSQ 125 >gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 243 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +R + R GF V A A + +V+D M G Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGK-ALNRILLRDTVDLIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRR 127 >gi|75907998|ref|YP_322294.1| metal dependent phosphohydrolase, HD region with response regulator receiver modulation [Anabaena variabilis ATCC 29413] gi|75701723|gb|ABA21399.1| Metal dependent phosphohydrolase, HD region with Response Regulator Receiver modulation [Anabaena variabilis ATCC 29413] Length = 414 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R L G+ V EA S A + ++ P+ +++D M + F Sbjct: 95 KILVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQ-QPDLILLDVMMPEMDGF 153 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V ++ D I G GA+ FL KPF+R L ++ L Q Sbjct: 154 EVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLVQQ 213 Query: 121 QKSKDEN 127 ++ ++ Sbjct: 214 KRLNEDL 220 >gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 250 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 10/135 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ +++++ + G+ V A A E+ + E+ + +++D + Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML 79 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G V + L + + G GA+ +L KPF+ L Sbjct: 80 PQINGLDICRLLRHQ--GNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQKSKDENQF 129 R L + Q+ + Q Sbjct: 138 RALLRRQRLSNLPQL 152 >gi|66044362|ref|YP_234203.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63255069|gb|AAY36165.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 245 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + R + + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPS-DLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|313204107|ref|YP_004042764.1| histidine kinase [Paludibacter propionicigenes WB4] gi|312443423|gb|ADQ79779.1| histidine kinase [Paludibacter propionicigenes WB4] Length = 1298 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + R + V EA + + E K P+ ++ D M + Sbjct: 1052 KVLVVEDNAEFRMFIMGEL-MEKYHVIEAANGKDGLEKALKH-QPDLIITDVMMPEMSGT 1109 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + V L + + I G AGA++++ KPFN + L + L + Sbjct: 1110 ELCRLLKKNIQTSHIPVILLTAKTSDKAQIEGFEAGADAYISKPFNMDILLLRIHHLIEQ 1169 Query: 121 QKSKDEN 127 Q + E Sbjct: 1170 QNQRKEQ 1176 >gi|119486072|ref|ZP_01620134.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC 8106] gi|119456847|gb|EAW37975.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC 8106] Length = 582 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ V++ + + F V A E P+ ++ D M + Sbjct: 1 MIKILVIEDDKQVQENIQVILELEDFDVIVARDGQSGLEKAIASS-PDLILCDIMMPQMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ ++ + +++ +L + D + + G GA+ +L KPF + L A++ Sbjct: 60 GFEVLSALQSIEATSNIPFIFLTAKSDRDDLRQGMELGADDYLTKPFTPKELLKAIQIRL 119 Query: 119 QMQKSKDE 126 ++ + Sbjct: 120 DKKEKYQQ 127 >gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 263 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D + ++ G+ V +A + + +L+P+ +++D + V Sbjct: 1 MKPRILVIDDDPAIAELVAINLEMAGYDVSQAADGVKG-QALAVQLMPDLIMLDLMLPRV 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R+ + + + L + + G AGA+ +L KPF E + +R L Sbjct: 60 DGFTVCQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRAL 119 Query: 118 PQM 120 + Sbjct: 120 LRR 122 >gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E E P+ +++D + G Sbjct: 4 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKA-SEEQPDMVLLDIMLPGKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQKS 123 + Sbjct: 120 RHQQ 123 >gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 246 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP--NYLVIDESMEG 58 M +LLVD + G V A A E +K P + LV+D + G Sbjct: 1 MARILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPG 60 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + VRQ+ + +L + + + G AGA+ +L+KPF L +R Sbjct: 61 LSGLSLCQQVRQVD--RATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRA 118 Query: 117 LPQM 120 L + Sbjct: 119 LLRR 122 >gi|297569043|ref|YP_003690387.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924958|gb|ADH85768.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 461 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + L D G+ F A S E E + + ++ D M G+ Sbjct: 1 MKTILVVDDEPNYLVILSELLRDEGYETFTAGSAEEGLEIA-RHTDLDLIITDMRMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + V + + +K +A RAGA ++L KPF+ + L ++R+ + Sbjct: 60 GLELLKTIKGINPSLPVIMITAFGEVDKAVAAMRAGAFNYLTKPFDNDELLVSIRKALEH 119 Query: 121 QKSKDENQFLDA 132 + EN L A Sbjct: 120 YEVVRENTRLRA 131 >gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD +R+V + + V EA + +A E E +PN +++D +M G+ L Sbjct: 5 KILVVDDDPQIRRVMKATLVGHSYEVIEARTGEDALEALPHE-MPNLVLLDMNMPGMGGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R GTD+ V L + + +A AGA+ ++ KPF E L +R + Sbjct: 64 ETCRAIRS---GTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAALRR 120 >gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + ++ + G+ A+ EA + +P+ +++D + G+ F Sbjct: 5 TILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRH-MPDLILLDLMLPGMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + I G GA+ +++KPF+ + +R + + Sbjct: 64 EVCKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAVLRR 123 Query: 121 QKSKDENQF 129 K +++ + Sbjct: 124 NKGEEDVRQ 132 >gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB [Providencia rettgeri DSM 1131] gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rettgeri DSM 1131] Length = 244 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A + LP+ +++D + G Sbjct: 18 RRILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLV-DPLPDLVLLDWMIPGGSG 76 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ DV V L + E + G GA+ +L+KPF+ + L ++ + + Sbjct: 77 IQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILR 136 Query: 120 M 120 Sbjct: 137 R 137 >gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A+ EA + E E P+ +V+D + Sbjct: 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ L + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119 Query: 120 MQKSKD 125 + + Sbjct: 120 RSEIRA 125 >gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 238 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 1/132 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + D G+ + A E+ + L++D + G+ Sbjct: 4 MKRILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGW-DALILDLMLPGID 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + + G GA+ ++ KPF+ L ++ L + Sbjct: 63 GLDICRRARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFRR 122 Query: 121 QKSKDENQFLDA 132 Q++ N +DA Sbjct: 123 QEAMSRNLQMDA 134 >gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] Length = 234 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + + + + G+ + A EA E EKE P+ +++D + Sbjct: 1 MHKILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKEN-PDLVLLDLMLPKKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ V + L + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCREIRKDSA---VPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V+ A EA E E+ P+ +++D + Sbjct: 3 KKILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVE-EVRPDLILLDIMLPQRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDEN 127 + K + Sbjct: 119 RHQQKAAD 126 >gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 2/122 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A EA E E E P+ +++D + + Sbjct: 9 KKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEK-PDLIILDLMLPKIDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 68 LEVAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 126 Query: 122 KS 123 + Sbjct: 127 AA 128 >gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1133 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD I +V + + V +A S EA E + +++D M + E Sbjct: 724 VLVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDVMMPNMSGYE 783 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R+ + V L + ++ G + GAN +L KPF ++ L ++ ++ Sbjct: 784 VCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHIKLS 843 Query: 122 KSKDENQF 129 K + Sbjct: 844 KITKAYER 851 >gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ ++++ + G V A +A+ E LP+ +++D + G Sbjct: 4 TILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAE-LPDLILLDWMLPGTSGL 62 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V V L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 AMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + + +D Sbjct: 123 RAPQLTDDVID 133 >gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F +A + PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDS-YQPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + L + + + G GA+ +++KPF+ + + +R + + Sbjct: 64 YQVCREIRSKAA---TPIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLR 120 Query: 120 MQKSKDEN 127 + +N Sbjct: 121 RYQVGQQN 128 >gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V + GF V A EA E P+ +V+D + + Sbjct: 6 TVLVVEDEPAQREVLAYNLEAEGFRVNRAADGEEAL-MLVDEAAPDIIVLDWMLPSVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ V + L + + G GA+ +++KP++ L +R + Sbjct: 65 EVCRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRR 124 Query: 121 QKSKDENQFLD 131 + + L+ Sbjct: 125 TRPSTVGERLE 135 >gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter sp. MED105] gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter sp. MED105] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 56/124 (45%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ + G V A +A+ E LP+ +++D + G + Sbjct: 4 TILVVEDEPAIAELIAVNLSFAGHKVLRAADADQAKTLITAE-LPDLVLLDWMLPGKTGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F +R V V L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 QFAHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] Length = 239 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 5/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + + + G+ V A + + + + +++D + + Sbjct: 3 QRLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQT-FDLIILDLMLPEMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + + L + D + G GA+ ++ KPF+ + +R + + Sbjct: 62 LDVCKQLRQSKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILR 119 Query: 120 MQKSKDEN 127 N Sbjct: 120 RVGHAQNN 127 >gi|257487351|ref|ZP_05641392.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626864|ref|ZP_06459818.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649144|ref|ZP_06480487.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. aesculi str. 2250] gi|320322868|gb|EFW78959.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. glycinea str. B076] gi|320329823|gb|EFW85811.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. glycinea str. race 4] gi|330867867|gb|EGH02576.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874323|gb|EGH08472.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. glycinea str. race 4] gi|330988064|gb|EGH86167.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009049|gb|EGH89105.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 245 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + EA E PN +++D + G+ Sbjct: 5 QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFP-EFKPNLVLLDLMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R G+ V V L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCRELRS---GSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQKS 123 ++ Sbjct: 121 RYQA 124 >gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA + P+ +V+D M Sbjct: 10 TILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLF-HNCEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSK 124 + + Sbjct: 126 VEKE 129 >gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032] gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032] Length = 242 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A EA E E P+ +V+D + + Sbjct: 3 KKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASE-QPDLIVLDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRIQKMMF--PILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RAQQSQ 125 >gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + ++ G+ A + +++ +P+ +++D + G++ Sbjct: 1 MQTVLIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQ-VPDLILLDLMLPGMM 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + V L + + G GA+ +++KPF+ L ++ + Sbjct: 60 GTEVCKILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + + R G+ V A + E P+ +V+D M V F Sbjct: 4 TILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAE-PDVVVLDVMMPQVDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G+ V V L + + E + G GA+ +L+KPF E L +R L + + Sbjct: 63 EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122 Query: 123 SKDEN 127 + +N Sbjct: 123 EQQDN 127 >gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 237 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + G+ V A+ A E E+E +++D M + Sbjct: 8 RVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPY-ELVLLDVMMPRLDGL 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R G V V L ++G AGA+ +L+KPF + L +R L + Sbjct: 67 TACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSA 126 Query: 123 SKD 125 Sbjct: 127 LTA 129 >gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L VD + K+ +H GF V A+S EA + ++ P+ +++D M G+ Sbjct: 3 QRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKA-RQSSPDLVILDLMMPGMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + +V + L + + G R G + + KPF+ L ++ + + Sbjct: 62 FETYQK-LKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR 119 >gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 5/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + F V AT+ +A E + +++D + + Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHY-DIVLLDLMLPEMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R D V L + + G GA+ ++ KPF+ + + + Sbjct: 60 GEEVLKRIRMDRN--DTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVL 117 Query: 119 QMQKSKD 125 + + + Sbjct: 118 RRYEKSE 124 >gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+VD +R+V G V EA+ A ++ P+ +V+D + Sbjct: 1 MANILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQP-PDLVVLDLMLPKVT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ V L + + I G GA+ +++KPF+ L + + Sbjct: 60 GLEVCRRLQSD---RRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis serovar chinensis CT-43] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 4 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQKS 123 + Sbjct: 120 RHQQ 123 >gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 4 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQKS 123 + Sbjct: 120 RHQQ 123 >gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V+ A EA + E E++P+ +++D + V Sbjct: 3 KKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVE-EVVPDLILLDLMLPKVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 RQ+ D+ + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 62 LEVA-RQVRKSHDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQ 120 Query: 122 KSKDE 126 S + Sbjct: 121 GSTSQ 125 >gi|239942395|ref|ZP_04694332.1| putative two-component systen response regulator [Streptomyces roseosporus NRRL 15998] Length = 207 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR+ R G+ A +A E P+ +V+D M + Sbjct: 9 QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEA-YAPDLIVLDIQMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G+ + L + G AGA+ +L+KPF + L +R L + Sbjct: 68 LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 >gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51] gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD +R++ L + GF EA EA E E P+ VID M + Sbjct: 1 MSKIMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKI-SEANPSLAVIDLMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ D+ V L + + + G AG + +L KPF+ + L ++ L Sbjct: 60 GYELCRQLRQ--YYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALL 117 Query: 119 QMQKSKDEN 127 + + + Sbjct: 118 RRYRIEASQ 126 >gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G A + +A ++LP+ +++D + G Sbjct: 4 SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + I G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|186681683|ref|YP_001864879.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464135|gb|ACC79936.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 475 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + +V D G+ + A + A E P+ +++D M G+ F Sbjct: 11 ILIVDDNPNNLEVLSETLMDTGWEILIAVNGEGAIAQAEYAC-PDIILLDVMMPGIDGFT 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ D+ + ++ + + G GA ++ KPF E + ++ Q++ Sbjct: 70 ACQRLKSNPVTCDIPIIFMTALSETVDKVKGLSLGAVDYITKPFEHEEVLARIKTHLQIR 129 Query: 122 KSKDENQ 128 + Q Sbjct: 130 NLTKQLQ 136 >gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 236 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A +A + E E+ P+ +++D + Sbjct: 3 KKILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVE-EIKPDLILLDIMLPQRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 IEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD +R++ L + GF EA EA E E P+ VID M + Sbjct: 1 MSKIMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKI-SEANPSLAVIDLMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ D+ V L + + + G AG + +L KPF+ + L ++ L Sbjct: 60 GYELCRQLRQ--GYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALM 117 Query: 119 QMQKSKDEN 127 + + + Sbjct: 118 RRYRIEASQ 126 >gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F +A + P+ +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNT-FHPDLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + + G GA+ +++KPF+ + L +R + + Sbjct: 64 YQVCREIR---HNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLR 120 Query: 120 MQKSKD 125 K + Sbjct: 121 RFKVRQ 126 >gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp. SIP3-4] gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp. MP688] gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. SIP3-4] gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. MP688] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 56/124 (45%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+V+ ++++ G A SV +A + +E LP+ +++D + G+ + Sbjct: 4 NILIVEDEPAIQELLALNLTQAGHNPIRALSVEQA-QMLIREALPDLIILDWMLPGMSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF ++ + + L + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 EFARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827] gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827] Length = 260 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A + LP+ +++D + G Sbjct: 34 RRILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLV-DPLPDLVLLDWMIPGGSG 92 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ D+ V L + E + G GA+ +L+KPF+ + L ++ + + Sbjct: 93 IQVIKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAILR 152 Query: 120 M 120 Sbjct: 153 R 153 >gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 238 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + +++ EA + EA + + +++D M + Sbjct: 5 TKILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEY-DVILLDLMMPKMDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V L + + + G GA+ +++KPF+ + ++ L + Sbjct: 64 VEVCTELRK---TKATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLR 120 Query: 120 MQKSKD 125 S Sbjct: 121 RSGSTK 126 >gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 236 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A + EA KE P+ +V+D M + Sbjct: 3 RKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEK-PDLIVLDWMMPEMSG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I +R++ + + + L + + + G G + +++KPF+ L ++ + + Sbjct: 62 -IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRL 120 Query: 122 KSKDENQFL 130 ++K N+ + Sbjct: 121 EAKTINEEI 129 >gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M S+L+VD + ++ + G+ FEA S +A E K + +++D M Sbjct: 1 MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEIL-KNNKVDLVILDIMMSDKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++ V L + + I G GA+ ++ KPF+ + L ++ L Sbjct: 60 GYEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119 Query: 119 QMQKSKD 125 + +S Sbjct: 120 RRVESLK 126 >gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ R GF V EA EA + +++D + G+ Sbjct: 4 TRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAY-ALIILDLMLPGMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A +RQ ++V + L D + G GA+ +++KPF+ L ++ + + Sbjct: 63 RDVCAQIRQH---SNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLK 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1116 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD +V + + + + +A+S EA E P+ +++D M + E Sbjct: 712 ILIVDDEPTNLQVIVNHLSLQNYAITQASSALEALELIRLGFKPDLILLDIMMPQMTGYE 771 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ L ++ + L + ++ G GAN +L KP + L ++ ++ Sbjct: 772 LCKKLREQFLPNELPIVLLTAKNQISDLVEGFAVGANDYLTKPVLKNELLARIKTHLRLA 831 Query: 122 K 122 K Sbjct: 832 K 832 >gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241] gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L] gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1] gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str. CNEVA-9066] gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055] gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str. Western North America USA6153] gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger B] gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str. Vollum] gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str. Australia 94] gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI] gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241] gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L] gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1] gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar anthracis str. CI] gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar finitimus YBT-020] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E E P+ +++D + G Sbjct: 4 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKA-TEEQPDMVLLDIMLPGKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQKS 123 + Sbjct: 120 RHQQ 123 >gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1385 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+ D + +R+ L + G+ V A + P+ ++ D M G L Sbjct: 637 RLLVADDNADMREYLARLLHSAGYQVDTVKDGLAALQAVRAH-APDLVISDVMMPGLDGL 695 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R P V V L E I G +AGA+ +L+KPF L +R ++ Sbjct: 696 GLVAALRADPRTASVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANVEL 755 Query: 121 QKSKDENQF 129 + ++ Sbjct: 756 ARLRNHQAR 764 >gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +RK+ F V EA A + E + P+ +V+D + + F Sbjct: 5 KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAE-DKNPSLVVLDVMLPDMDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R D+ + L I G GA+ +++KPFN L +R + + Sbjct: 64 EICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRR 121 >gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] Length = 241 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++R + V A E +K + +++D + + Sbjct: 6 KRILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHS-FDLVILDLMLPKLSG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R ++V + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 65 ERVCRAIR---DVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFR 121 Query: 120 MQKSKDENQ 128 + E Q Sbjct: 122 RAHKESEPQ 130 >gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20] gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E P+ +++D+ + + Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEK-PDLVLLDQMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+ ++ V + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GV-EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118 Query: 121 QKSKDE 126 +K+ + Sbjct: 119 RKAVSQ 124 >gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A+ EA E EKE P+ +V+D + Sbjct: 3 KKILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKEN-PDLIVLDVMLPKVDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +RQ + V + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IDVCKQLRQQKMM--VPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|300864888|ref|ZP_07109734.1| response regulator receiver domain-containing protein [Oscillatoria sp. PCC 6506] gi|300337112|emb|CBN54884.1| response regulator receiver domain-containing protein [Oscillatoria sp. PCC 6506] Length = 128 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLVD +R + G+ V A A + K+ +P+ +++D + Sbjct: 1 MPQILLVDDEPALRDSLTYTLQKEGYEVMTAADGLSAIKQFHKQ-VPDVILLDLMLPEVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R ++V + L + + G AGA+ ++ KPFN L ++ + Sbjct: 60 GMEVCWRIRA---FSNVPIVMLTAKDQDIDKVWGLEAGADDYVTKPFNTRELVARIKAVL 116 Query: 119 QMQKSKD 125 + + ++ Sbjct: 117 RRRSAEQ 123 >gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LLV+ R+V + G+ V A + EA E LP+ +++D M +E Sbjct: 8 ILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAM-LLVAEALPDLVILDWMMPLLSGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ V L + + G GA+ +++KP++ L +R + Sbjct: 67 VCRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRRI 126 Query: 122 K 122 + Sbjct: 127 R 127 >gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 248 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E +P+ +V+D M Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFP-NCMPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + + Sbjct: 126 VEKEA 130 >gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 4 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQKS 123 + Sbjct: 120 RHQQ 123 >gi|167629886|ref|YP_001680385.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167592626|gb|ABZ84374.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 277 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M + + D + ++ R GF T+ + + +P+ +++D M G Sbjct: 1 MTRIFIADDEPPILELIRRYLEKEGFEAVTFTNGDD-LLAAYAQQVPDLVILDIMMPGTN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ +R+ +DV + + + D I G G + +L KPF+ L ++ + Sbjct: 60 GLDVCKRLRRD---SDVPIIIVSAKDDEIDRILGLELGGDDYLSKPFSPRELVVRVKNIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 254 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R V G+ V A A E+ P+ +++D M G+ Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERG-RPDLVLLDVLMPGMDGLT 74 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A R + V L +AG AGA+ +L KPF + L +R L + Sbjct: 75 ACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGAL 134 Query: 124 KDE 126 E Sbjct: 135 TGE 137 >gi|75908368|ref|YP_322664.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702093|gb|ABA21769.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 407 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD KV + N GF V A + A +E LPN +++D M G+ Sbjct: 7 NSVLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKV-QETLPNLILLDVMMPGMDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H++ P D+ V ++ D + G + GA ++ KP E + + + Sbjct: 66 FETCRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHLE 125 Query: 120 MQKSK---DENQFLDAI 133 +++++ + + + ++ Sbjct: 126 LRRTQLKLAQEEKMSSL 142 >gi|29349532|ref|NP_813035.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341441|gb|AAO79229.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1450 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + ++ +++ + + V A++ E + +P+ ++ D M + Sbjct: 1192 TILVVEDNEELKAFLKNILS-ENYTVITASNGKEGLQHAVDN-IPDLIISDVMMPVMDGL 1249 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1250 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309 Query: 121 QKSKDE 126 +KS E Sbjct: 1310 RKSLQE 1315 >gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D +RK+ GF V EA + EA + + + +++D M + Sbjct: 4 MK-ILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQSIDLIILDIMMPELD 62 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V V L D + G GA+ ++ KPF+ L ++ L Sbjct: 63 GWSVCRQIRKSSR---VPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALL 119 Query: 119 QMQKSKD 125 + + + Sbjct: 120 RRSGNAE 126 >gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 236 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + A EA E+E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEK-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TETIE 123 >gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 252 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 18 MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 77 GLEVA-KSIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 135 >gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143] gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKD 125 Sbjct: 119 TDLAS 123 >gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L++VD +R++ GF V A A + ++L P+ +V+D + + F Sbjct: 8 RLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLV-RDLEPDLVVLDVMLPDMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V +L + D + + G G + ++ KPF+ E + +R + + Sbjct: 67 TVTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRR 124 >gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +RK+ G+ V EA A + K+ +++D M Sbjct: 5 KVLVVDDESRMRKLVSDFLTKQGYEVLEAGDGEAALDIFYKDKDIQLIILDVMMPKLDGW 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L D + G G + ++ KPF+ + L + + + Sbjct: 65 GVCREIRKDSK---IPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 + + L A Sbjct: 122 TSAIGSDDILSA 133 >gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321] gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 >gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + N GF V+ A EA E E E+ P+ +++D + G Sbjct: 4 KKILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119 Query: 120 MQ 121 Sbjct: 120 RH 121 >gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300] gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 >gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + ++ + GF V A + A E ++ + +++D + G Sbjct: 1 MTRVLVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V L + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQIRAK---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVL 116 Query: 119 QMQKSKDE 126 + Q + DE Sbjct: 117 RRQAASDE 124 >gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185] gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W] gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185] Length = 342 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA + E E + +++D M + Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLE-EKEFDLIILDIMMPNMDGI 176 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 177 EACMKIRED-RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 233 >gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 248 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A+ EA E ++ P+ +V+D M Sbjct: 10 TILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAF-RQSSPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QK 122 + Sbjct: 126 VE 127 >gi|298485851|ref|ZP_07003928.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159629|gb|EFI00673.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 245 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEEPSDLLILDVMLPHEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|255616226|ref|XP_002539738.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223502939|gb|EEF22645.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 185 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+V+ ++++ G ATSV A + +E +P+ +++D + G+ + Sbjct: 5 NILVVEDEPAIQELLALNIKQAGHHAIRATSVEHA-QMLLRETMPDLILLDWMLPGMSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF ++ L +V + L D + G GA+ ++ KPF+ L ++ + + Sbjct: 64 EFARRLKSDSLTKEVPIIMLTARGDEFDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 123 Query: 121 QKSK 124 + + Sbjct: 124 RAPQ 127 >gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110] gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 243 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +R + R GF V A A + +V+D M G Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGK-ALNRILLRDTVDLIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRR 127 >gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 242 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 1/125 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + F V AT+ +A E + +++D + + Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHY-DIVLLDLMLPEMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R D V L + + G GA+ ++ KPF+ + + + + Sbjct: 60 GEEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119 Query: 121 QKSKD 125 + + Sbjct: 120 YEKSE 124 >gi|330974665|gb|EGH74731.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 193 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + R + + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPS-DLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|330873059|gb|EGH07208.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 245 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V E E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAE-FRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R++ + G+ + A +A + P+ +++D + G+ F Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRR-FKPSLVILDVMLPGMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L + G GA+ +L KPF + L MR L + Sbjct: 64 ELCRLIRAESS---VPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRR 120 Query: 121 QKSKDEN 127 + ++ Sbjct: 121 SQMQNSQ 127 >gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A+ EA + E E P+ +V+D + Sbjct: 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ L + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119 Query: 120 MQKSKD 125 + + Sbjct: 120 RSEIRA 125 >gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 241 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 5/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + F V AT+ +A E + +++D + + Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAE-NGQFDIVLLDLMLPQMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R D V L + + G GA+ ++ KPF+ + + + Sbjct: 60 GEQVLKQLRMDRN--DTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVL 117 Query: 119 QMQKSKD 125 + + Sbjct: 118 RRYEKSA 124 >gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 241 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + G+ VF A EA E P+ +++D + + F Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEK-PDLVILDVMLPDMDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + +L + D + G +AG + ++ KPF E + + + + K Sbjct: 70 TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129 Query: 123 SKDENQFL 130 Q L Sbjct: 130 HGSSEQPL 137 >gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ +R++ R GF V EA EA + LP+ +++D M G Sbjct: 3 QQILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQH-LPDLMLLDVMMPGPDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + + V L + + G GA+ +++KPF+ L +R + + Sbjct: 62 FEICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLR 121 Query: 120 MQKSKDENQFLD 131 E+ L+ Sbjct: 122 RGTRSGESPVLE 133 >gi|268316158|ref|YP_003289877.1| response regulator receiver modulated serine phosphatase [Rhodothermus marinus DSM 4252] gi|262333692|gb|ACY47489.1| response regulator receiver modulated serine phosphatase [Rhodothermus marinus DSM 4252] Length = 371 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 6/126 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+V+ H +R++ + + + + V A + EA + +E +P+ ++ D M Sbjct: 1 MARYSILVVEDEHTLRRLLEYRLSKY-YRVRSAANGEEALQLVLEE-IPDLIISDIMMPK 58 Query: 59 VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F ++ + +L + D + G R G + ++ KPF+ + L + Sbjct: 59 MDGFALQQALQNRKETRAIPFIFLTAKADEHSRMRGMRMGVDDYITKPFDIDQLLARIER 118 Query: 117 LPQMQK 122 L + K Sbjct: 119 LLERTK 124 >gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 16 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 74 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 75 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 131 Query: 120 MQKS 123 + Sbjct: 132 RHQQ 135 >gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++V+ + + ++ G+ V A E E P+ +++D M + Sbjct: 1 MPKVVVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTN-PDIVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ ++ + L + + + G GA+ ++ KPF L ++ Sbjct: 60 GLSVCKLVRK---TKNMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQL 116 Query: 119 QMQKSKDENQ 128 + S +E + Sbjct: 117 RRGTSHEEIR 126 >gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp. HTCC2649] gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp. HTCC2649] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+V+ +R++ GF V A + EA + ++ P+ V+D + + F Sbjct: 11 TLLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHH-PDLCVLDVMLPDMDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + + ++ + I G G + ++ KPF+ E + +R + + + Sbjct: 70 AVTRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 129 >gi|329296470|ref|ZP_08253806.1| DNA-binding transcriptional regulator CpxR [Plautia stali symbiont] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A+ +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMDGFEVIVASDGEQALNLL--DNTVDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQF 129 + ++ Q Sbjct: 116 RRSNWSEQQQQ 126 >gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum PSI07] gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum PSI07] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G A + +A ++LP+ +++D + G Sbjct: 4 SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + I G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ ++++ + G V A +A+ E LP+ +++D + G Sbjct: 4 TILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAE-LPDLILLDWMLPGTSGL 62 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V V L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 AMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + + +D Sbjct: 123 RAPQLTDDVID 133 >gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E P+ +++D+ + + Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEK-PDLVLLDQMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+ +++ V + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GV-EVLRQIRSKSEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118 Query: 121 QKSKDE 126 +K+ + Sbjct: 119 RKAVAQ 124 >gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 236 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R + V EA E K + +++D + V Sbjct: 6 RRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHH-FDLVILDLMLPRVPG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + E I G GA+ +L+KPF+ L R L + Sbjct: 65 ERVCRAIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLR 121 Query: 120 MQKSKDENQF 129 + E Q Sbjct: 122 RVHADSEPQR 131 >gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037] gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 >gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD H +R+V R GF V EA A + +++D + + Sbjct: 9 RILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHW-DLVILDIMLPKIDGW 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +DV + L D + G GA+ +++KPF+ + ++ + + Sbjct: 68 EVCREIRKI---SDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRR 124 Query: 121 QK 122 + Sbjct: 125 AR 126 >gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + R G+ V EA + + E + +++D + Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFY-EKPFDLVILDVMLPKKD 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R++ T+ V L D E + G GA+ ++ KPFN + L ++ L + Sbjct: 65 GW-SILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRK 123 Query: 121 QKSKDE 126 + E Sbjct: 124 TNNMVE 129 >gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 >gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + EA + ++ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ ++V V L + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRSLRQR---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDENQ 128 + Q +E + Sbjct: 117 RRQGDVEELE 126 >gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025] gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans] gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ A EA E+E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLAKEGYDTITAFDGREALSKYEEEN-PDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEVRKNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TENIE 123 >gi|307591954|ref|YP_003899545.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985599|gb|ADN17479.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1035 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD + +R L ++ + V A + A E ++ LP+ ++ D M Sbjct: 666 RILLVDDNADMRHYVSRLLSER-WQVETAANGAIALEMIAQQ-LPDLVLTDVMMPELDGF 723 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P+ + + L E I G AGA+ +L+KPF+ L ++ QM Sbjct: 724 GLLNTLRADPITKSIPIILLSARAGKEATIEGLEAGADDYLIKPFSTYELIARVQTQLQM 783 Query: 121 QKSKDEN 127 + + E Sbjct: 784 SRLRQEQ 790 >gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V A+ EA E + + VID M + Sbjct: 1 MKRILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEA-EKIVENEQIHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1311 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL D + +R L G+ V A + P+ ++ D M Sbjct: 641 RILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHP-PHLVLTDVMMPRLDGF 699 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ V V L E + G + GA+ +L+KPF+ + L + ++ Sbjct: 700 GLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARLEI 759 Query: 121 QKSKDE----NQFLDA 132 +++ E + L A Sbjct: 760 ARARSEAALAQERLHA 775 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LLV+ S +R + G V A E E L P+ +ID + G Sbjct: 1164 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLA-LRPDVALIDVGLPGIDG 1222 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 E VR P G +++ L E RAG + L KP N + L Sbjct: 1223 YEVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1273 >gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V A+ +A + + +++++D + + Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKP-FDFIILDVMLPNLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + L + D I G GA+ +L KPF+ + M+ + + Sbjct: 60 GIEITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QKSKDENQ 128 + + + + Sbjct: 120 LEPRQQAR 127 >gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU121] Length = 236 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA + E P+ +V+D + Sbjct: 3 QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESS-QPDLIVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQ 128 + +E + Sbjct: 120 RSQFVNEVE 128 >gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB [Candidatus Nitrospira defluvii] gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB [Candidatus Nitrospira defluvii] Length = 238 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + ++ + GF A + E + E P+ +++D + Sbjct: 9 KKILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEH-PDLIILDLMLPELDG 67 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R + + L + + + G GA+ ++ KPF+ + L ++ L + Sbjct: 68 LEVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLR 127 Query: 120 MQK 122 + Sbjct: 128 RLE 130 >gi|254464929|ref|ZP_05078340.1| response regulator receiver modulated serine phosphatase [Rhodobacterales bacterium Y4I] gi|206685837|gb|EDZ46319.1| response regulator receiver modulated serine phosphatase [Rhodobacterales bacterium Y4I] Length = 417 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S + R++ +GF V EA S A E C+ E P+ ++ D M G+ Sbjct: 13 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICQAET-PDLILSDWMMPGMNG 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 LEF R + L + + ++ G AGA+ FL KP + + LR + Sbjct: 72 LEFCRAFRSRSSEDYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 131 Query: 117 LPQMQKSKDENQFL 130 + +MQ+ E + Sbjct: 132 ILRMQRELSEKNRI 145 >gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora] gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora] Length = 248 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A+ EA E + P+ +V+D M Sbjct: 10 TILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHR-CEPDLVVLDVMMPRLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +L+KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRR 125 Query: 121 QK 122 + Sbjct: 126 VE 127 >gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + V A EA + E E P+ LV+D M + Sbjct: 5 TKILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEH-PDLLVLDLMMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F G + V L + + E G G + ++ KPF+ L ++ + + Sbjct: 64 FEVCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVLRRV 123 Query: 122 KSKDENQFLDA 132 ++ L Sbjct: 124 SGEELAPRLKE 134 >gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] Length = 237 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ GF V A E E P+ +V+D + + Sbjct: 3 QKVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSED-PDIVVLDLMLPKMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 VEVCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRS 121 Query: 122 KSKDENQ 128 ++ +++ Sbjct: 122 QALRQHE 128 >gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] Length = 239 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R + V +A + K + +V+D + V Sbjct: 7 RRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHH-FDLVVLDLMLPRVPG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 66 ERVCRVIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 122 Query: 120 MQKSKDENQF 129 + E Q Sbjct: 123 RVHADSEPQR 132 >gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 229 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F A EA + + LP+ +++D + G Sbjct: 3 KRILIVDDEPAIRDMVAFALRKGEFEPIHACDAREA-QTAIADRLPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ R+ L ++ + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RTREDDED 129 >gi|146319014|ref|YP_001198726.1| response regulator [Streptococcus suis 05ZYH33] gi|145689820|gb|ABP90326.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 05ZYH33] Length = 154 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE-FPDIVILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-RTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKDENQFLDA 132 + + +++ Sbjct: 119 SELPETQTNIES 130 >gi|70731962|ref|YP_261704.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5] gi|68346261|gb|AAY93867.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5] Length = 243 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V E + +++D + Sbjct: 6 KSILLVDDDQEIRELLETYLSRCGFQVRSTADGA-GFRLALNEAPSDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P + V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPKRSQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQKSKDE 126 + E Sbjct: 125 RVQFTQE 131 >gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae] Length = 230 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCLEADNAQDA-HAIIVDRKPDLILLDWMLPGGTS 62 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +++ L +D+ + L + + + I G G + ++ KPF+ L ++ + Sbjct: 63 GIELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLKAVL 122 Query: 119 QMQKSKD 125 + D Sbjct: 123 RRAGPAD 129 >gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 229 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R+V + G+ V EA EA E + +++D M + Sbjct: 5 RVLVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESW-DLIILDVMMPKMDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V + L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 AVCQEIRRVSK---VPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRR 120 Query: 121 QKSKDENQ 128 ++ + + Sbjct: 121 AGTESKKE 128 >gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 229 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD VR++ + + G+ V T A + + P+ +++D M + Sbjct: 3 KTILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSAL-YIARHENPDLILLDIMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 + +RQ V + + + G GA+ +++KPF L +R + + Sbjct: 62 Y-QFLRQFRQERQTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAILRRG 120 Query: 121 QKSKDENQFLDA 132 ++ D+ + L A Sbjct: 121 EEHPDKQEILRA 132 >gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL N1-067] gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL S4-171] Length = 238 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA+ EA + +++D M G + Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNY-EVILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 Query: 121 QKSKDEN 127 K E Sbjct: 122 AKQTSEE 128 >gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1] gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 243 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R GF V A A +V+D M G Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGK-ALNRILLRETVELIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 123 SKD 125 ++ Sbjct: 129 PQE 131 >gi|71737172|ref|YP_273446.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557725|gb|AAZ36936.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 245 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] Length = 244 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R GF VF A A + +V+D M G Sbjct: 11 KILVVDDDARIRDLLRRYLTQEGFEVFLAEDGK-ALTRILLRESVDLIVLDLMMPGEDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L +V+ I G GA+ +L KPFN L + + + + Sbjct: 70 SICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRR 128 >gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.] Length = 234 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD H + K + +F + + V AT EA + E + +++D M + Sbjct: 10 MK-ILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLF-EAPFDLIILDIMMPKID 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V L + D E I G GA+ +L KPF+ + L +R L + Sbjct: 68 GLAVLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRR 127 Query: 121 QKSKDE 126 + E Sbjct: 128 SGGQTE 133 >gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319] gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319] Length = 235 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ VF A EA E E E+ P +++D + Sbjct: 3 KRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVE-EVQPEMILLDIMLPQKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] Length = 238 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDEN 127 K +DE Sbjct: 120 RTKLQDEQ 127 >gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23] gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23] gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 237 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + + G+ V A EA + E E P+ +++D + + Sbjct: 3 KKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAES-PDLILLDLMLPKIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ D + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVA-RQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119 >gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] Length = 235 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + + + G+ V A EA + E E P+ +++D + Sbjct: 1 MKKVLVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDEN-PDLIILDWMLPELE 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + V + L + + G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVAKEIRKS---SHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHL 116 Query: 119 QMQKSKD 125 + ++ + Sbjct: 117 RRTENIE 123 >gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM B1551] gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM B1551] Length = 235 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ VF A EA E E E+ P +++D + Sbjct: 3 KRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVE-EVQPEMILLDIMLPQKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQKS 123 + Sbjct: 119 RHQQ 122 >gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] Length = 236 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R + V EA E K + +++D + V Sbjct: 6 RRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHH-FDLVILDLMLPRVPG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + E I G GA+ +L+KPF+ L R L + Sbjct: 65 ERVCRAIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLR 121 Query: 120 MQKSKDENQF 129 + E Q Sbjct: 122 RVHADSEPQR 131 >gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ R + + EA + EA E + +++D M G Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAK-GLEANYDLILLDLMMPGTDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + L + + + G AG + +++KPF+ + ++ L + Sbjct: 66 IEVCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 233 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ G+ V EA S EA E P+ +V+D + G+ F Sbjct: 8 RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAM-EGKPDLVVLDVMLPGMDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R D+ V L I G GA+ +++KPFN L +R + + Sbjct: 67 EVCRLLR--EKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRR 124 Query: 121 -QKSKDENQFLDA 132 +K+ E++ + + Sbjct: 125 IRKAGLEDEKISS 137 >gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] Length = 238 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + + R+ GF V EA EA E P+ +++D + L Sbjct: 12 TILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRV-AEAPPDLVLLDWMLPALSGL 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ P D+ + + + + + GA+ ++ KPF + L +R L + Sbjct: 71 EVCRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRR 130 >gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 238 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA+ EA + +++D M G + Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNY-EVILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 Query: 121 QKSKDEN 127 K E Sbjct: 122 AKQTSEE 128 >gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 232 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+ D +R++ F GF V EA EA + P+ +++D M Sbjct: 5 QTVLIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGK-PDIILLDIMMPVLDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E VR++ +DV + L + + I G GA+ ++ KPFN + ++ + + Sbjct: 64 FEVCKQVRKI---SDVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLR 120 Query: 120 M--QKSKDENQF 129 Q + +N+ Sbjct: 121 RSSQFLQSQNKQ 132 >gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 242 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R G+ V A E EK + +V+D + + Sbjct: 6 RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKH-QFDLIVLDLMLPKLSG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + E I G GA+ +++KPF+ L +R L + Sbjct: 65 ERVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFR 121 Query: 120 MQKSKDENQ 128 DE Q Sbjct: 122 RTHLADEPQ 130 >gi|323495909|ref|ZP_08100977.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sinaloensis DSM 21326] gi|323319125|gb|EGA72068.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sinaloensis DSM 21326] Length = 1128 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + +V G+ V A EA E E P +++D M G+ Sbjct: 724 LLVVDDEPVNLRVLDSFLRLEGYRVSTAKDGHEALEKVAIE-RPELVLLDIMMPGMSGYQ 782 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + V L + + G AGAN +L KPFN++ L + Sbjct: 783 VCETLRLEYDHSQLPVIMLTALNQADDRVRGFNAGANDYLSKPFNKQELAARILAHLTAS 842 Query: 122 KS---KDENQFLD 131 K+ + ENQ L Sbjct: 843 KAELRRVENQQLQ 855 >gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 6/136 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ G+ V A A E K+ + +++D + + Sbjct: 1 MAKILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQN-FDAILLDLMLPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ + V + + D + G GA+ ++ KPF+ + ++ + Sbjct: 60 GMTVLKTIRQDKI--STPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVL 117 Query: 119 QMQKS-KDENQFLDAI 133 + + E++ DAI Sbjct: 118 RRSQVDHHESERTDAI 133 >gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 250 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 10/129 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ +++++ + G+ V A A E+ + + + +++D + Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML 79 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G V + L + + G GA+ +L KPF+ L Sbjct: 80 PQINGLDICRLLRHQ--GNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQKS 123 R L + Q+ Sbjct: 138 RALLRRQRL 146 >gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 230 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R+V G V A + + P+ +V+D M + Sbjct: 4 TILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQT-PDLIVLDIGMPEMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + +L + + G G + ++ KPF+ L + + + Sbjct: 63 ETCRRIRK---TSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKR 119 Query: 121 QKSKD 125 + K+ Sbjct: 120 LRPKE 124 >gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 409 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 7/137 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + +V H+ D G+ V A A E E P +++D M G+ Sbjct: 8 QSILIVDDNPNNLEVLAHILTDVGYQVSVAIDGETAIEQVEYH-QPELILLDIMMPGIDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ PL ++ + +L D + G GA ++ KPF E + +R + Sbjct: 67 FETCRRLKANPLTCEIPIIFLTALSDSNNKVNGLSVGAVDYISKPFQSEEVLARIRIHLK 126 Query: 120 M----QKSKDENQFLDA 132 + +K + + Q L+ Sbjct: 127 LYNLTRKLEQQKQLLEE 143 >gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 246 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAISELVSINLEMAGYDVNQAEDGIKG-QALAVQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +D+ + L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F A A + + +P+ +++D + G Sbjct: 3 KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDARAA-QTAIADRVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ R+ L ++ + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RTREDDED 129 >gi|28868500|ref|NP_791119.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851738|gb|AAO54814.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|331015209|gb|EGH95265.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 245 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQ-FRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ R + + EA + EA E + +++D M G Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAK-GLEANYDLILLDLMMPGTDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + L + + + G AG + +++KPF+ + ++ L + Sbjct: 66 IEVCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|213968363|ref|ZP_03396507.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301384629|ref|ZP_07233047.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058918|ref|ZP_07250459.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|302133031|ref|ZP_07259021.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927001|gb|EEB60552.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|330963154|gb|EGH63414.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 245 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQ-FRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ + GF A+ EA + E E P+ +++D + Sbjct: 6 KILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEK-PDLIILDVMLPKVDGF 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + L + + G GA+ +L KPF+ L +R + + Sbjct: 65 EVCRSLRARGS---MPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRR 121 Query: 121 QKSKDEN 127 K + Sbjct: 122 VAEKQQQ 128 >gi|320160319|ref|YP_004173543.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994172|dbj|BAJ62943.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 407 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD ++R + + GF EA + +A E P+ +++D +M + Sbjct: 4 KILVVDDDALMRLMVTKTLSTEGFEFLEAENGVQAVEKAIAH-QPDLIIMDVNMPEMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P+ + + + + E I G +GA+ ++ KPF+ L + L + Sbjct: 63 EACQRIRSNPITSAIPIILVTSLSTVEDKIKGFDSGADDYIPKPFDPIELTMRVNVLLRR 122 >gi|300866045|ref|ZP_07110777.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] gi|300335960|emb|CBN55935.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] Length = 352 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M ++L+VD + + R + G V A A E + +++D M Sbjct: 1 MKPEEGNVLVVDDNEVNRDLLARRLQRQGHKVQVAEDGILALEMMRSHP-FDLVLLDIMM 59 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + + H++ + V + D + ++ GA +L KPFN L+ + Sbjct: 60 PQMNGYQVLEHLKADDKLRYIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPVLLKARI 119 Query: 115 RELPQMQKSKDENQ 128 + ++ +D+ Q Sbjct: 120 SACLEKKRLRDQEQ 133 >gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098] gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098] Length = 224 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + +R++ R GF V EA E LP+ +V+D + G+ Sbjct: 1 MQRILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSE-LPDLVVLDLMLPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P+ + V L + I G GA+ +++KPF+ L +R + Sbjct: 60 GCDVCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAIL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] Length = 231 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + + R+ G+ V EA E +E P+ L++D + G Sbjct: 1 MPKILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEA-ELLLQESQPDLLLLDWMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + + L + + I G GA+ +++KPF+ L +R + Sbjct: 60 GIELCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIF 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72] gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115] gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150] gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330] gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408] gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355] gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 233 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ L++D + V Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAE-QPDILILDLMLPEVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKDENQFLDA 132 ENQ ++ Sbjct: 119 ADLVVENQVEES 130 >gi|119945946|ref|YP_943626.1| response regulator GltR [Psychromonas ingrahamii 37] gi|119864550|gb|ABM04027.1| response regulator GltR [Psychromonas ingrahamii 37] Length = 241 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D +R++ + F V A E + P+ +++D + G Sbjct: 5 KQVLVIDDDQAIRELLAEYLSKNNFDVITAEDGLE-MDKQRLIHQPDLIILDIMLPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ + V + L D + G GA+ ++ KPF+ L ++ L + Sbjct: 64 FILCQRIRQ---TSHVPIIMLTANSDEMDRVLGLEIGADDYIAKPFSPRELLARIKALLR 120 Query: 120 MQK-SKDENQ 128 + + +ENQ Sbjct: 121 RTQFASEENQ 130 >gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 321 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +V +V + GF V A A E P+ +V+D + G+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTP-PDLVVLDLMLPGLDG- 114 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I R++ V V L D I G GA+ ++ KPF+ L ++ + + Sbjct: 115 IEVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRR 172 >gi|313884444|ref|ZP_07818205.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] gi|312620228|gb|EFR31656.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] Length = 273 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + + + G+ V +A A E E+ +++++D + G+ Sbjct: 1 MEHILIVDDEPSILTLLAYNLQQAGYQVDQADDGLLAYEMIEQNKY-DFIILDVMLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G+ V + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 60 GMDICRKVRKKGSQVPILMLTAKDEEYDKVVGLELGADDYMTKPFSPREVLARIKAILRR 119 Query: 121 QKSKDENQFLD 131 S+++ +D Sbjct: 120 TGSQNDLNIVD 130 >gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 212 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A + EA E E+ +P+ ++ D M + Sbjct: 10 KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEQSPVPDMIICDVMMPEMDG 69 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ +R + + +L + + I G R GA+ +++KPF E L + Sbjct: 70 YTFVEKLRDDSRTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129 Query: 120 M 120 Sbjct: 130 R 130 >gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 248 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E C +E P+ +V+D M Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALE-CFQECEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125 Query: 121 QKSK 124 + + Sbjct: 126 VEKE 129 >gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] Length = 342 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA + E E + +++D M + Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLE-EKEFDLIILDIMMPNMDGI 176 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 177 EACMKIRED-RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 233 >gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1] gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 243 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R GF + A A + +V+D M G Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGK-ALNRILLRETVDLIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 123 SKD 125 ++ Sbjct: 129 PQE 131 >gi|330447872|ref|ZP_08311520.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492063|dbj|GAA06017.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 243 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ GF V A E + C P+ +++D M G Sbjct: 5 KQVLVVDDDKEIRELLEEYLTKNGFEVQTAAEGEE-MKRCLAAGYPDLILLDIMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H+R+ +DV + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 64 FTLCQHIRKS---SDVPIIMLTAVSDEMDQIIGLEIGADDYIAKPFSPRQLLARIKALLR 120 Query: 120 MQKSKD 125 K D Sbjct: 121 RIKPSD 126 >gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG] Length = 257 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V +V G V A A P+ +V+D + G+ Sbjct: 19 VLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTH-RPDLVVLDLMLPGMDGLE 77 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V L D + I G GA+ ++ KPF+ L + + + + Sbjct: 78 VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTR 135 >gi|289678167|ref|ZP_06499057.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 195 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + R E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016] gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + + G+ A+ EA + KE P +++D + G+ Sbjct: 14 KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIA-KEERPKLILLDVMLPGMDGY 72 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 73 DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 132 >gi|198274194|ref|ZP_03206726.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135] gi|198272869|gb|EDY97138.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135] Length = 1312 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ R F + + V A + E + + + +PN ++ D M + Sbjct: 1057 ILVVEDNRDIREYVRSSFEEM-YEVLTAANGKEGWDIAQSQ-IPNIIISDIMMPVMDGIE 1114 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H+++ + + V L + + G AGA+SF+ KPF+ L + + + + Sbjct: 1115 LCRHIKEDMRTSHIPVILLTAKDTLQDKEEGYAAGADSFITKPFSARLLNSRINNILENR 1174 Query: 122 K 122 + Sbjct: 1175 R 1175 >gi|114332048|ref|YP_748270.1| two component transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114309062|gb|ABI60305.1| two component transcriptional regulator, winged helix family [Nitrosomonas eutropha C91] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ ++++ + + ++V S +A E+LP+ +++D + G + Sbjct: 4 TVLVVEDEPAIQELIAYNLRNANYIVVCVNSAEQAVVKI-NEILPDLILLDWMLLGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF +R+ P + V L V+ ++G AGA+ ++ KPF+ L ++ + + Sbjct: 63 EFARSLRRDPRTRSIPVIMLTARVEEGDKVSGLEAGADDYITKPFSPRELIARIKAVLRR 122 Query: 121 QKSKDENQFLDA 132 + ++ L+A Sbjct: 123 SLPEASDEILNA 134 >gi|261250289|ref|ZP_05942865.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio orientalis CIP 102891] gi|260939405|gb|EEX95391.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio orientalis CIP 102891] Length = 1128 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + +V G+ V A EA EKE P L++D M G+ Sbjct: 724 LLVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALAAVEKEK-PELLLLDIMMPGMSGYQ 782 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + L + I G GAN +L KPFN++ L + Sbjct: 783 VCESLRESYDHAALPIIMLTALNQTDDRIRGFSVGANDYLSKPFNKQELAARIVAHL--T 840 Query: 122 KSKDENQFLD 131 SK E + L+ Sbjct: 841 ASKAEQRRLE 850 >gi|254444474|ref|ZP_05057950.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198258782|gb|EDY83090.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 482 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + R+ L + A S A E E E P+ +++D M G+ F Sbjct: 8 TILVVDDNLGARRSIEALLTQESYRFLLADSGVVALELLE-EHTPDVILLDVMMPGMSGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +++ + + D E MI G AGA+ FL KP ++ LR +R + ++ Sbjct: 67 ETCQKIRANSRVSEIPIIMITALDDEESMIQGIDAGADDFLSKPISKIELRSRIRSILRL 126 Query: 121 ---QKSKDENQFLD 131 +K DE Q + Sbjct: 127 NRFRKLCDERQKFE 140 >gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 250 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 12/139 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ +++++ + GF V A A E+ + E + +++D + Sbjct: 20 RILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML 79 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G V + L + + G GA+ +L KPF+ L Sbjct: 80 PHINGLDICRLLRHQ--GNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQKSKD--ENQFLD 131 R L + Q+ + Q L Sbjct: 138 RALLRRQRLSSLPQLQVLK 156 >gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 237 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + + G+ V A EA + E E P+ +++D + + Sbjct: 3 KKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESES-PDLILLDLMLPKIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 RQ+ D + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVA-RQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRT 120 Query: 122 KSKD 125 S + Sbjct: 121 SSAN 124 >gi|254413172|ref|ZP_05026943.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179792|gb|EDX74785.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 467 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+V+ + + GF V AT A + E P+ +++D M G+ F Sbjct: 9 NLLIVEDNPTNLSFLFNYLTKSGFKVLVATDGKTAIQRVEAA-QPDLILLDVMMPGMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P D+ V ++ D + G GA ++ KP E + ++ + Sbjct: 68 EVCKRLKSSPSMRDIPVIFMTALSDTLNKVHGFEIGAVDYITKPIQPEEVVSRIQTHLTL 127 Query: 121 QKSKDENQ 128 + + E Q Sbjct: 128 RNLQKELQ 135 >gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21] gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 225 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + ++ GF AT + E + LP+ +++D + G+L Sbjct: 1 MQTVLIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVR-TLPDLILLDLMLPGML 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++R+ + V L + + + G GA+ +++KPF+ L M+ + Sbjct: 60 GTEVCKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVL 119 Query: 119 QMQKSK 124 + K++ Sbjct: 120 RRSKTR 125 >gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 227 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RKV + F + A+ EA E P+ +++D + + Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKV-NEFNPDLIILDLMLPEISGE 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + L + E + G GA+ +L+KPF+ L ++ + + Sbjct: 63 EVCQKIRQD---KQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRR 119 Query: 121 QKSKDE 126 K E Sbjct: 120 SNQKAE 125 >gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 241 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ R G+++ EA A + E+ + +++D + G+ Sbjct: 9 RILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKK-GLEIDYDLILLDLMLPGMDGV 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V L + + G AG + +++KPF+ L ++ + + Sbjct: 68 DVCRELRNK---KATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRR 124 Query: 121 QKSKD 125 + Sbjct: 125 SSATA 129 >gi|294495497|ref|YP_003541990.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] gi|292666496|gb|ADE36345.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] Length = 170 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L++D + G+ V EA + E E E P+ +++D M + Sbjct: 48 QTILIIDDEPDAIIAAKRALQSEGYNVIEAYNGKTGLEAIE-EKTPDLILLDVMMPDMDG 106 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ L + + L + + + I G GA+ ++ KPFN L+ +R + + Sbjct: 107 FEICKQLKKDELYNHIPIIMLTAKGEVDDRIEGIETGADDYITKPFNLRELKARIRMVLR 166 Query: 120 MQKS 123 ++ Sbjct: 167 RAQN 170 >gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 235 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA E K P+ +++D + Sbjct: 4 QKILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHE-PDLILLDIMLPYQDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 MEVCREVRKKF---DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLR 119 Query: 120 MQKSKDE 126 + E Sbjct: 120 RNQKSKE 126 >gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ +R++ + G+ A +A + LP+ +++D + + + Sbjct: 4 KILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTII-HDALPDLILLDWMLPNMTGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F +R+ + + L +AG GA+ ++ KPF+ L + + + Sbjct: 63 DFARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVLRR 122 >gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] Length = 226 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ R G+ V EA EA E ++ +++D M + Sbjct: 5 KILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKEIALVILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + V L + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREIRQS---SQTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 + +DA Sbjct: 122 SHVLGAEEIIDA 133 >gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R G+ V A E EK + +V+D + + Sbjct: 6 RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKH-QFDLIVLDLMLPKLSG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 65 ERVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFR 121 Query: 120 MQKSKDENQ 128 DE Q Sbjct: 122 RTHLADEPQ 130 >gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 + +VD +R + G+ V A S EA ++ P+ +V+D M G Sbjct: 7 IAVVDDHRDIRDLVGKYLTHQGYRVSVAESG-EALRRILEKGAPDLVVLDIMMPGEDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 RQ+ T++ V +L D I G GA+ ++ KPFN L +R + + S Sbjct: 66 VC-RQLRTTTELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRRVNS 124 Query: 124 KDENQ 128 + Sbjct: 125 LPPQR 129 >gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 1/125 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + +V R G+ V A A E +E +++D + + Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALE-LGREPGLQLIILDLMLPRMSGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + L + G R GA+ +L KPFN + L + + + Sbjct: 64 VCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQ 123 Query: 124 KDENQ 128 +Q Sbjct: 124 SKPSQ 128 >gi|253570096|ref|ZP_04847505.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840477|gb|EES68559.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1450 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + ++ +++ + + V A++ E + +P+ ++ D M + Sbjct: 1192 TILVVEDNEELKTFLKNILS-ENYTVITASNGKEGWQHAVDN-IPDLIISDVMMPVMDGL 1249 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1250 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309 Query: 121 QKSKDE 126 +KS E Sbjct: 1310 RKSLQE 1315 >gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum LMG 18811] Length = 235 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA +E P+ +++D+ + + Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEK-PDLVLLDQMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+ ++ V + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GV-EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118 Query: 121 QKSKDE 126 +K+ + Sbjct: 119 RKAVAQ 124 >gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rustigianii DSM 4541] gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rustigianii DSM 4541] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A + LP+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLV-DPLPDLVLLDWMIPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ DV V L + E + G GA+ +L+KPF+ + L ++ + + Sbjct: 62 IQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|145594416|ref|YP_001158713.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303753|gb|ABP54335.1| response regulator receiver modulated diguanylate cyclase [Salinispora tropica CNB-440] Length = 326 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + + G+ V A EA E + P+ V+D M LE Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGYEVIHAGDGQEALEVIARH-RPDLAVVDLMMPRVDGLE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P+ + V L + + G AGA+ +L+KPF+ L + + Sbjct: 70 LTRRLRADPMTAVLPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRRN 129 Query: 122 KSKDE 126 K E Sbjct: 130 KEFRE 134 >gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD H + ++ ++ G+ V + P+ +++D + G+ Sbjct: 5 TILVVDDEHDILELLKYNLEREGYSVITVETGEA-AAATAAAKQPDLIILDLMLPGIDGV 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R D+ + L + + +I+G GA+ ++ KPF+ + L +R L + Sbjct: 64 EVCKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLRR 123 Query: 121 QKSKD 125 ++ K+ Sbjct: 124 KQLKE 128 >gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTICQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 231 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+V+ ++++ + GF V A S EA + +E + +V+D + G Sbjct: 1 MRKPSILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREP-IDAMVLDLMLPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 E VR + + L + + + +++G GA+ ++ KPF+ L + Sbjct: 60 KDGNEVCRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEA 119 Query: 117 LPQM 120 + Sbjct: 120 ALRR 123 >gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + V +A + +A + + + +V+D M G + Sbjct: 6 KILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEY-DLIVLDLMMPGIDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + L + + + G AG + +++KPF+ + ++ L + Sbjct: 65 EVCEEIRKH---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121 Query: 121 QKSKD 125 S Sbjct: 122 SSSTK 126 >gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ G+ V A A E+E P+ ++++ + G+ Sbjct: 6 RILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEP-PDLVLLEVMLPGLDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V + + I G GA+ +L+KP+ E L +R L + + Sbjct: 65 AVARRLRASGRTVPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALLRRGR 124 >gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 225 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + + F EA + EA + K + ++ID M + Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQIL-KNNKVDVILIDVMMPKMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 F R +DV + +L D + G + G + +++KPF+ L + + + Sbjct: 63 FTLCARIREQ-SDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRA 121 Query: 121 QKSKDENQFLD 131 +K +N+ L Sbjct: 122 YHNKQKNEDLS 132 >gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4] Length = 236 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V+ A EA + E E+ P+ +++D + Sbjct: 3 KKILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAE-EVQPDMILLDIMLPKRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCRELRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLR 118 Query: 120 MQKS 123 ++ Sbjct: 119 RHQN 122 >gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13] Length = 228 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V + G+ V A A+E PN +V+D + G+ Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPNLVVLDMMLPGIDGM 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + ++V V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 123 SKDEN 127 ++ + Sbjct: 125 GEEPD 129 >gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 248 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ D +R++ + G+ V A EA + + P+ +V+D M Sbjct: 10 TILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLF-RNCEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R L + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 125 Query: 121 QKSKD 125 + + Sbjct: 126 VEKEQ 130 >gi|91203277|emb|CAJ72916.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 238 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 6/136 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+ D K+ R + F + V EA EA E P+ +++D M Sbjct: 1 MAKILVADDITQNVKLLRVILTAFKYEVIEAYDGEEALNKARTEN-PDLILLDIMMPKIT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++ + + + + I G AGA+ F+ KPFN+ L ++ L Sbjct: 60 GYEVCKKLRADEATKNIPIIMITALHEMDDRIKGIEAGADDFISKPFNKTELLARVKSLL 119 Query: 119 QMQ---KSKDENQFLD 131 + + +DE++ L+ Sbjct: 120 RPRTVAGREDESEVLN 135 >gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 248 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ D +R++ + G+ V A EA + + P+ +V+D M Sbjct: 10 TILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLF-RNCEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + + Sbjct: 126 VEKEQ 130 >gi|330895752|gb|EGH28041.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 187 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + R E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 275 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 51 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 109 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + +I G + GA+ ++ KPF+ E L + + Sbjct: 110 GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 166 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 167 RRTNEHKQIQ 176 >gi|251800213|ref|YP_003014944.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547839|gb|ACT04858.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 255 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + + + G V A EA +E P+ +++D + + Sbjct: 4 KILVVDDEQPIADILKFNLEKEGHQVICAFDGGEAVRLAFEE-QPDLILLDLMLPVKDGM 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 DVCREVRTRL---HMPIIMLTAKDTEIDKVLGLELGADDYVTKPFSTRELLARVKAHLRR 119 Query: 121 QKSKDE 126 Q+ E Sbjct: 120 QQKTSE 125 >gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] Length = 229 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +LLV+ R+V + GF V A EA E P+ +++D M + +E Sbjct: 8 VLLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAM-LLVSEAAPDLVILDWMMPLMSGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V L + + G GA+ +++KP+N L +R + Sbjct: 67 VCRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRT 126 Query: 122 KSKDENQFLD 131 + L Sbjct: 127 RPAAAGALLS 136 >gi|109898155|ref|YP_661410.1| two component AraC family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700436|gb|ABG40356.1| two component transcriptional regulator, AraC family [Pseudoalteromonas atlantica T6c] Length = 1341 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L++D + +R+ + + + + +A + E +LP+ ++ D M + Sbjct: 1097 TTVLVIDDNAELRQFIALRLSGY-YRITQAENGEEGLAKAIS-VLPDVIICDVMMPKMDG 1154 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 H+R + + L + + G + GA+ +L KPF+ L + + Sbjct: 1155 LTLMHHLRGNQHTRSIPIILLSAKSAKRDTVEGLQRGADDYLTKPFDTSELVARVDAQLR 1214 Query: 120 MQKSKDENQFLDA 132 +K E L+A Sbjct: 1215 GRKLIRE--KLEA 1225 >gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 226 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+V+ + GF V A A E+ + +++D + G Sbjct: 1 MTRLLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGA-DLVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ + V V L + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRALRQR---STVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + DE Sbjct: 117 RRRGEIDE 124 >gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 233 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F EA P+ +++D + G+ Sbjct: 5 QKILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREF-ASFRPDLIILDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + + G GA+ +++KPF+ + L +R + + Sbjct: 64 YQVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] Length = 237 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + +A +A + EK P+ +++D + + Sbjct: 4 MKKILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKS-QPDLVILDLMLPKMD 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V V L + + G GA+ ++ KPF+ L ++ Sbjct: 63 GLEVCREIRKQSA---VPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 223 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 4/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + KV G+ V S E +E P+ +V D M + Sbjct: 1 MKRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQE-QPDVVVSDVVMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ G V +L + + + G GA+ +++KPF L + Sbjct: 60 GFEFCRQLRQQRGGELVPFIFLSSRSELDDRVQGYEWGADDYIIKPFEPLELVAKIEAQI 119 Query: 119 QMQKSKDENQFLDAI 133 + + + + + L I Sbjct: 120 ERAR-RTQLEILRLI 133 >gi|149197475|ref|ZP_01874526.1| response regulator [Lentisphaera araneosa HTCC2155] gi|149139493|gb|EDM27895.1| response regulator [Lentisphaera araneosa HTCC2155] Length = 223 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + R + GF A+++ +A E+ E N +++D + Sbjct: 1 MPKILIVEDEPSIADNIRMALDLEGFQHRWASTLAQADEYL-AENTINLIILDIGLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R ++ V L D I G GA+ ++ KPF+ L ++ + Sbjct: 60 GFDFCRKLRAS---QNIPVIMLTARSDEVDRIVGLEIGADDYVTKPFSPRELSARIKSVL 116 Query: 119 QMQKSKDENQ 128 + ++ E + Sbjct: 117 RRTQNSFEIE 126 >gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 248 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ VF A EA + P+ +V+D M Sbjct: 10 TILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIF-HNCEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSK 124 + + Sbjct: 126 VEKE 129 >gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316] gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 236 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ A EA E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQY-AEFQPDLIILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118 Query: 121 QKSKD 125 ++ + Sbjct: 119 TENIE 123 >gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W] gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II] Length = 238 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + + G+ V A EA + E E P+ +++D + + Sbjct: 4 KKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAES-PDLILLDLMLPKIDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ D + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 LEVA-RQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 120 >gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 236 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A EA E E E P+ +++D + + Sbjct: 4 RKILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVE-EFNPDLILLDIMLPLMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ + V + L + + G GAN ++ KPF+ L ++ + Sbjct: 63 MEVCREVRK---TSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLR 119 >gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 228 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D + ++ + G+ A+ E P+ +++D + + Sbjct: 7 KILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFF-EYKPDLVLLDVMLPHMDGI 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRKDSE---TPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122 Query: 121 QKSKD 125 +++ Sbjct: 123 YNAEN 127 >gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 237 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ + D G+ + A + E+ + L++D + GV Sbjct: 5 KRILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + G GA+ +L KPF+ L ++ L + Q Sbjct: 64 LEICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123 Query: 122 KSKDENQFLDA 132 ++ N +DA Sbjct: 124 EAMSRNLRMDA 134 >gi|150391003|ref|YP_001321052.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950865|gb|ABR49393.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus metalliredigens QYMF] Length = 449 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD +R + + VFEA + E E +EL P+ +++D M + Sbjct: 1 MNKILIVDDEKNMRWAMKKALKTEDYQVFEAANGQEGVEKF-QELQPDLVLLDLKMPVMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + + + V + E + + GA ++ KPF+ E L+ + + Q+ Sbjct: 60 GLEALQKMKGIDEHIPVIMITAHGTTESAVEAMKLGAIDYISKPFDIEELKIVIHKALQV 119 Query: 121 QKSKDENQFLDA 132 + +D+ +L Sbjct: 120 KGLQDKVDYLKE 131 >gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 224 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 60/129 (46%), Gaps = 7/129 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + ++ R F G+ V A++ EA + + P+ +++D +M G+ Sbjct: 3 KKILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALD--QSSHNPDLILLDVNMPGIDG 60 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + +L +V+ + I G G + ++LKPF+ + L + + Sbjct: 61 FEVCRMIR---DHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLR 117 Query: 120 MQKSKDENQ 128 ++ + ++Q Sbjct: 118 REERRSQSQ 126 >gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 247 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ + G++ A +A E P +V+D M + Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGA-YDPELIVLDVLMPRMDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G V V L + G AGA+ +L+KPF + L +R L + Sbjct: 71 TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRR 128 >gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44] gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44] Length = 243 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R GF + A A + +V+D M G Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGK-ALNRILLRETVDLIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 123 SKD 125 ++ Sbjct: 129 PQE 131 >gi|254411354|ref|ZP_05025131.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181855|gb|EDX76842.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 483 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 7/133 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L++D S ++ GF + A A E + P +++D M G+ F Sbjct: 28 ILIIDDSPNNLEILSETLTSAGFEIAVALDGETALEQIAYDP-PTLVLLDVMMPGIDGFE 86 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P ++ + ++ D + G GA ++ KPF +E + ++ +++ Sbjct: 87 TCRRLKSNPDTHEIPIIFMTALTDTIDKVKGLNLGAVDYITKPFQQEEVLARVKVHLKLR 146 Query: 122 ----KSKDENQFL 130 +++N L Sbjct: 147 TLTKTLEEQNTRL 159 >gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 232 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+VD + ++ + G+ FEA S +A E K + +++D M Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEIL-KNSKVDLVILDIMMSDKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++ V L + + I G GA+ ++ KPF+ + L ++ L Sbjct: 60 GYEILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119 Query: 119 QMQKSKD 125 + +S Sbjct: 120 RRVESLK 126 >gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++VD +R++ + G+ V A S EA E E+ P+ +++D + + F Sbjct: 8 TIVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIER-TQPDLIILDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D V +L D + + G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] Length = 230 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 5/134 (3%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + LLV+ + ++ F F V EA +E P+ +++D +EG Sbjct: 1 MARVKMLLVEDDAALAELLVFHFKREDFEVVHTPDGEEAL-LLARENTPDIVLLDWMVEG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R+ P +V + L + E + G GA+ ++ KPF+ L + Sbjct: 60 ISGIEVCRRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGA 119 Query: 117 LPQMQKSKDENQFL 130 + + + + L Sbjct: 120 VLRRVRPALAGEAL 133 >gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 226 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + F V EA EA + KE L++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLTKKNFQVLEAGDGEEAMDIFYKEKDIALLILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L D + G G + ++ KPF+ + L + + + Sbjct: 65 EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 + ++ L A Sbjct: 122 TGQSNPDEILSA 133 >gi|307153375|ref|YP_003888759.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7822] gi|306983603|gb|ADN15484.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7822] Length = 381 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 7/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D ++K+ + V A++ E E + P ++ D M G+ Sbjct: 1 MAQILIIDDDLAIQKLLSKSLMRSQYQVIVASNGNEGLEKAL-QYCPALIICDWLMPGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + F L + I G AGA+ FL KP L+ +R Sbjct: 60 GLEVCRQIKATPKLSTTFFILLTAQGSLNDRIMGLDAGADDFLCKPIEINELQARVRAGL 119 Query: 119 QMQK----SKDENQFLD 131 ++ + + + Q L+ Sbjct: 120 RLHQLSHDLQQQKQLLE 136 >gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + KV G+ V A EA + ++L P+ +++D + Sbjct: 1 MK-VLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKA-RQLGPDIVLLDVMLPSLD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +DV + L D I G GA+ +++KPF+ + + MR + Sbjct: 59 GWGVCKEIR---RTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIF 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 227 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD +R++ R + V A EA +E P+ +V+D + Sbjct: 1 MK-ILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAARE-APDLIVLDIGLPELD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ V + +L D I G GA+ ++ KPF+ L ++ + Sbjct: 59 GFEVCRRIRQRSE---VPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIA 115 Query: 119 QMQKS 123 + ++ Sbjct: 116 KRSRA 120 >gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1290 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L D + +R + L + + V A + LP+ ++ D M Sbjct: 649 KIVLADDNADMRNYVKRLLSQQ-YEVEAVKDGAAALAAIRGQ-LPDLVLTDVMMPEVDGF 706 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R P ++ + L E I G AGA+ +L+KPF+ L + +M Sbjct: 707 ELLRELRANPQTKELPIILLSARAGEESRIEGLEAGADDYLIKPFSARELLARVEANLKM 766 Query: 121 QKSKDENQFLD 131 + + E + Sbjct: 767 AQLRQEATRRE 777 Score = 72.9 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 5/105 (4%) Query: 14 RKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMP- 70 R+ L +G S EA + P+ L+ D M V I VR P Sbjct: 1179 REFIVFLIEQYGGSAIAVASANEALVTL-TQFQPDVLLSDIGMPEVDGYMLIQQVRATPP 1237 Query: 71 -LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 G + L G + KP L + Sbjct: 1238 AQGGQIPAIALTAYAGEIDYQHAMSVGFQRHIPKPVEPTKLVEVI 1282 >gi|300868441|ref|ZP_07113062.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300333575|emb|CBN58250.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 382 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + + + D G+ + A + A E+ P+ +++D M G+ Sbjct: 14 RILVVDDAPDNVLLVQTILEDEGYEISSAENGFSALAQIEQSP-PDLVLLDVMMPGMDGY 72 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + + ++ G GA+ F+ KP + L +R L ++ Sbjct: 73 EVTQRIRQNEKLPFIPILLITAHDQPS-VVQGLDTGADDFIRKPVEMDELLARVRSLLRL 131 Query: 121 QKSKDENQFLD 131 + S DE + Sbjct: 132 KHSVDERDLIA 142 >gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 235 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R + R GF V EA EA E E P+ +++D + G+ Sbjct: 2 RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTE-RPDLVLLDIMLPGIDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D ++G AGA+ +L+KPF E L +R + + Sbjct: 61 AVCRILRRE---SDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117 >gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 238 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + + G+ V A EA + E E P+ +++D + + Sbjct: 4 KKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESES-PDLILLDLMLPKIDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 RQ+ D + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 LEVA-RQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRT 121 Query: 122 KSKD 125 S + Sbjct: 122 SSAN 125 >gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 238 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+V+ +R++ GF V A A + E+ P+ LV+D + + F Sbjct: 8 TLLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLA-AEVEPDLLVLDVMLPDMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V +L + + G G + ++ KPF+ E + +R + + Sbjct: 67 TITRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSH 126 Query: 123 SKDE 126 ++D+ Sbjct: 127 AEDQ 130 >gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] Length = 250 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R G+ V A E EK + +V+D + + Sbjct: 17 RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKH-QFDLIVLDLMLPKLSG 75 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 76 ERVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFR 132 Query: 120 MQKSKDENQ 128 DE Q Sbjct: 133 RAHQADEPQ 141 >gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5] gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R G+ V A++ E + E P+ +V+D M V F Sbjct: 4 RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSED-PDVVVLDVMMPQVDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R G+ + V L + + E + G GA+ +L+KPF E L +R L + + Sbjct: 63 EALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRK 121 >gi|325299779|ref|YP_004259696.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] gi|324319332|gb|ADY37223.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1437 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLV+ + +RK + + V EA + + KE +P+ ++ D M + Sbjct: 1175 TILLVEDNEELRKFTGRVLRHE-YRVLEAENGRAGLDMALKE-IPDIIISDVMMPEMDGI 1232 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ P + V L + E I G GA+ ++ KPF+ L ++ L + Sbjct: 1233 ELLDIIKHNPSVCHIPVVVLSAKASLEDRIKGLEYGADGYITKPFSSAYLLARIKSLMRQ 1292 Query: 121 QKSKD 125 +++ Sbjct: 1293 KENLK 1297 >gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] Length = 235 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A EA E E E P+ +++D + V Sbjct: 3 KKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAED-PDLIILDLMLPKVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRE 120 Query: 122 KSKD 125 + Sbjct: 121 ATAQ 124 >gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 225 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ LL++D + K + + GF V A E E + +++D + + Sbjct: 1 MERLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNY-DLVILDIMLPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R +++ + L D I G GA+ +L KPFN L +R L Sbjct: 60 GFSVCREIR---TFSNIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALL 116 Query: 119 QMQ-----KSKDENQF 129 + K K+E + Sbjct: 117 RRASNPYVKKKEEIRR 132 >gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 245 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A E +++LP+ ++ D M Sbjct: 20 RLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFSKA-QQMLPDVVITDVMMPRLDGY 78 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V +L + G AG + ++ KPF+ + L +R + Q Sbjct: 79 GLLKKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 138 Query: 121 -QKSKDENQFLD 131 Q+ E Sbjct: 139 QQRLLQEAARFA 150 >gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 227 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ +R++ + GF V +A +A + EK + + +++D + V Sbjct: 5 RIMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPM-DLVILDVMLPNVDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ G+ V + L + + G G + +++KPF+ + L ++ L + Sbjct: 64 TVCRQIRQ---GSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKR 120 Query: 121 QK--SKDENQFLD 131 + + +++ + Sbjct: 121 SRGNANAQDRVIK 133 >gi|313682761|ref|YP_004060499.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155621|gb|ADR34299.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 428 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 4/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + N + + AT+ +A + + P+ +++D M G+ Sbjct: 7 QKILIVDDEPLNISIVAEILNHE-YDLLVATNGEKALQIVSLDPKPDLILLDIMMPGMNG 65 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++P + + +L + D E +I G AGA F+ KPF +E L ++ Q Sbjct: 66 FEVAKRLKEIPETFQIPIIFLTAKHDSESIIKGFEAGAVDFVSKPFQKEELLARIKNTLQ 125 Query: 120 MQKSK-DENQFLD 131 M K N+ L+ Sbjct: 126 MFNLKNALNRALE 138 >gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 234 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 9/133 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-----PNYLVIDES 55 M LL+VD +R GF V A +A + + + +++D Sbjct: 1 MPRLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLM 60 Query: 56 MEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + G L+ H+R+ + + + G GA+ +L+KPF L Sbjct: 61 LPGVGGLDVCRHLRRSD--PHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVAR 118 Query: 114 MRELPQMQKSKDE 126 R L + + E Sbjct: 119 CRALLRRSQQTIE 131 >gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 239 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A EA + E + P+ +V+D + V F Sbjct: 11 RLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAE-DFRPDLVVLDVMLPDVDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G V V +L D +AG G + ++ KPF+ E + +R + + Sbjct: 70 TVTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127 >gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 248 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA E E + P+ +V+D M Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFE-QCNPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + + Sbjct: 126 VEKEQ 130 >gi|307153462|ref|YP_003888846.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983690|gb|ADN15571.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 645 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 7/133 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + ++ + D GF V A A E E P+ +++D M + F Sbjct: 10 ILIVDDTPTNLEMLLDILEDAGFKVVVAEDGESAIEMVEYAP-PDLILLDILMPRLDGFE 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P D+ + ++ +D + + G GA ++ KPF E + + ++Q Sbjct: 69 TCRRLKSNPKTADIPIIFMTALIDNVEKLKGLNLGAVDYVTKPFEHEEVLARINIHLRLQ 128 Query: 122 ----KSKDENQFL 130 K ++N+ L Sbjct: 129 NLTKKLLEQNEHL 141 Score = 88.7 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGVLEF 62 LLLVD +R+ + L ++ + V A + EA E + E + +++D M + Sbjct: 522 LLLVDDEAGIRETTKILLENYNYQVLTANNGIEAIELYAQYEHKVSLVLMDIMMPAMGGD 581 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A + +V + + + EK+ + +FL KP+ + L + + Sbjct: 582 TAIRTLQKMNPEVKIIGISGLISSEKLSQEMKMKTQAFLPKPYTAQELLHTIDLIL 637 >gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD +R++ R G+ + E+ A + + + +++D + G+ Sbjct: 6 SILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDY-DLILLDIMLPGMDGT 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +RQ V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 65 EVCARLRQ---FKTTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRR 121 Query: 121 QKSKD 125 + Sbjct: 122 SSATA 126 >gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 253 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 10/129 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ +++++ + G+ V A A E+ + + + +++D + Sbjct: 23 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML 82 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G V + L + + G GA+ +L KPF+ L Sbjct: 83 PQINGLDICRLLRHQ--GNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 140 Query: 115 RELPQMQKS 123 R L + Q+ Sbjct: 141 RALLRRQRL 149 >gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] Length = 229 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ L G+ A + A LLP+ +++D + G Sbjct: 3 KRILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASL-TGLLPDLVLLDWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+R+ L + V L + E + G GA+ ++ KPF+ + + +R + + Sbjct: 62 IQFIQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMIR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 237 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + EA + PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPV-FKPNLILLDLMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCRELRSS---SQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQKSKDENQ 128 ++ + Q Sbjct: 121 RYQAAPQPQ 129 >gi|119511740|ref|ZP_01630843.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463577|gb|EAW44511.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 412 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + R L + G+ V EA S A K+ P+ +++D M + F Sbjct: 95 TILVVDDHTMSRISAAALLSMEGYEVIEAESGHTAL-LMVKQKQPDLILLDVMMPIMDGF 153 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + ++ D I G GA+ FL KPF+ L ++ L + Sbjct: 154 EVCQRLKQDEHTRLIPIIFITALNDRRSRIRGIEVGADDFLSKPFDNVELTARVKSLVRQ 213 Query: 121 QKSKDENQFLDAI 133 ++ ++ + + Sbjct: 214 KRLNEDLDHAEKV 226 >gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui] gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var. liui] Length = 241 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R + + G+ V A+ E +E PN +++D M Sbjct: 7 KILIVDDETSIRTILETRLSMIGYDVISASDGEEGLHIFRRE-YPNLVILDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQEIRKE---SDVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRR 122 >gi|332662395|ref|YP_004445183.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332331209|gb|AEE48310.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1361 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ +H +R+ + + V + EA + ++ +P+ ++ D M + F Sbjct: 1106 RILLIEDNHDLRQYLTQILAGK-YQVRTLGNGREA-QLNLEQWMPDLILSDIMMPLMDGF 1163 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + + L D + R G + +L+KPF L ++ L Q Sbjct: 1164 QFLEWLKSSEKHASIPIIMLTARADLGDKLRALRTGVDDYLVKPFVEAELLARIQNLLQR 1223 Query: 121 QKSKD 125 Q+ + Sbjct: 1224 QQLRR 1228 >gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis JLW8] gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family [Methylotenera mobilis JLW8] Length = 235 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+++ ++++ G A S A + +E +P+ +++D + G+ L Sbjct: 4 NILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLM-RETVPDLILLDWMLPGMNGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ ++ + L + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 ELARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii 12D] gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB [Ralstonia sp. 5_7_47FAA] gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family [Ralstonia pickettii 12D] gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB [Ralstonia sp. 5_7_47FAA] Length = 237 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G A + +A ++LP+ +++D + G Sbjct: 4 SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + I G +GA+ ++ KPF+ + L ++ + + Sbjct: 63 MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 226 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L+VD +R V + G+ V EA EA + K +++D M + Sbjct: 1 MNTILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAI-KTTSIQLVILDVMMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + ++ + L + + I G GA+ +++KPFN L ++ + Sbjct: 60 GIRACLKIREI-SNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLRR 118 Query: 121 QKSKDENQF 129 Q + +F Sbjct: 119 QALIGKEEF 127 >gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 247 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLILLDLMLPRVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTICQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 239 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A + EA E E P+ V+D + + F Sbjct: 12 RLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAE-EHNPDLAVLDVMLPDMDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D + + G G + ++ KPF+ + + +R + + + Sbjct: 71 TVTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130 Query: 123 SKDEN 127 D++ Sbjct: 131 PMDDD 135 >gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b str. SLCC5334] Length = 238 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA+ +A +++D M G + Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNY-EVILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 Query: 121 QKSKDEN 127 K E Sbjct: 122 AKQSSEE 128 >gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165] gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165] Length = 238 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA+ +A +++D M G + Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNY-EVILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 Query: 121 QKSKDEN 127 K E Sbjct: 122 AKQSSEE 128 >gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 227 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+V+ + + GF V A A E+ + +++D + G Sbjct: 1 MTRLLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGA-DLVLLDVMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ V V L + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRALRQKSS---VPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVL 116 Query: 119 QMQKSK 124 + + S+ Sbjct: 117 RRRGSE 122 >gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 238 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ + F++ EA + +A E + +++D + G+ Sbjct: 4 MARILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDY-DIILLDLMLPGMD 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L + + + G AG + +++KPF+ + + ++ + + Sbjct: 63 GIEVCQRVRE-FKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRR 121 Query: 121 QKSKD 125 + Sbjct: 122 SSATA 126 >gi|17232371|ref|NP_488919.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134016|dbj|BAB76578.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 407 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD KV + N GF V A + A +E LPN +++D M G+ Sbjct: 7 NSVLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKV-QETLPNLILLDVMMPGMDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H++ P D+ V ++ D + G + GA ++ KP E + + + Sbjct: 66 FETCRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHLE 125 Query: 120 MQKSK---DENQFLDAI 133 +++++ + + + ++ Sbjct: 126 LRRTQLKLAQEEKMSSL 142 >gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea] gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea] Length = 243 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ G+ V A++ EA KE P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKE-YPSLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L + I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122 >gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A+ EA + E E P+ +V+D + Sbjct: 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ L + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RSEIAA 125 >gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 236 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R + R D G+ V EA E E + + +++D + G Sbjct: 1 MKTILVVDDDADLRSLLRAYLTDQGYHVIEAAEGSELWTRLENSTV-DLIILDLMLPGED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + L D I G GA+ ++ KPF+ L +R + Sbjct: 60 GLALCRTIRAR---QTTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIF 116 Query: 119 QMQKSKDENQ 128 + + +++ Q Sbjct: 117 RRSEQQNQAQ 126 >gi|170077528|ref|YP_001734166.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC 7002] gi|169885197|gb|ACA98910.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC 7002] Length = 376 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 7/138 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L++D +R + G+ V A+ + P+ ++ D M + Sbjct: 1 MPQILVIDDDLAMRVLLERTLKRKGYQVTTASDGKTGLDLAIA-TRPDLIISDWMMPEMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E V+Q P + F L E + G AGA+ FL KP + L +R Sbjct: 60 GIEVCQAVKQHPDLSTTFFILLSALDAVEDKVMGLDAGADDFLCKPISSHELEARVRSGL 119 Query: 119 QM----QKSKDENQFLDA 132 ++ Q + + L++ Sbjct: 120 RICRLTQDLTAQKRALES 137 >gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 282 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A A E E P+ +++D + Sbjct: 46 RRILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEK-PDLILLDLMLPVKDG 104 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ VR + + L + + G GA+ ++ KPF L ++ + Sbjct: 105 MDVCREVR---GKLNTPIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHLR 161 Query: 120 MQ 121 Q Sbjct: 162 RQ 163 >gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri] gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112] Length = 235 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A A E E E P+ +++D + + Sbjct: 3 KKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAEN-PDLIILDLMLPKIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 62 LEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120 Query: 122 KSKD 125 + Sbjct: 121 ATLK 124 >gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 232 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+VD + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+VD +R++ + G+ VF A EA E +++ P+ +V+D M Sbjct: 14 SILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQH-PDLIVLDVMMPRLDGY 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + I G GA+ +++KPF+ + L +R + + Sbjct: 73 GVCRAIRK---TSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRR 129 >gi|153872867|ref|ZP_02001635.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070667|gb|EDN68365.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 379 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL+VD + GF V A A + E P+ +++D M G Sbjct: 9 KTLLIVDDIPANVSLLLDFLTKAGFKVLVAKDGESALKKTEYAH-PDLILLDVMMPGLSG 67 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ ++ + ++ + + G GA ++ KP E + + + Sbjct: 68 FEVCKILKSKEETKNIPIIFMTALSETVDKVKGFSLGAVDYITKPIQHEEVLARVTTHLK 127 Query: 120 MQKSKDENQ 128 +++ + + + Sbjct: 128 LRQLQRQLE 136 >gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+VD +R++ + G+ VF A EA E +++ P+ +V+D M Sbjct: 14 SILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQH-PDLIVLDVMMPRLDGY 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + + G GA+ +++KPF+ + L +R + + Sbjct: 73 GVCRAIRK---TSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRR 129 >gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 1299 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L D + +R R L + V A E + P+ ++ D M G+ F Sbjct: 646 RVVLADDNPDMRDYVRRLLGQ-DYEVEAVGDGGAALEAMRR-RRPDLVLTDVMMPGMDGF 703 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P D+ V L E + G AGA+ +L KPF+ L +R + Sbjct: 704 GLLQAMRSDPRLRDIPVVMLSARAGEEAKVEGLDAGASDYLSKPFSARELLARVRANIDL 763 Query: 121 QKSKDE--------NQFLDA 132 + + E N+ L+A Sbjct: 764 ARVRREAETTLRELNERLEA 783 Score = 94.9 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61 ++L+V+ + + + L D G+ A S +A + + ++ D M G+ Sbjct: 1173 NVLVVEDNPEIGEFSTQLLEDLGYRTVLARSGIDALRMLDDNPKRFDLVLSDVVMPGMDG 1232 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + G R G + + KP++ + L +R++ + Sbjct: 1233 VTLGQEIRRRLPTIPIVLNSGYSDV--LADGGRHGFS-LIHKPYSVDELSRVLRQVMAGR 1289 Query: 122 KSKDEN 127 + E Sbjct: 1290 ATSSEQ 1295 >gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD ++ K R G+ V A EA KE + +++D + + Sbjct: 3 NRVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMA-KENTYDIILLDLMLPKMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 LDVCQQIRE---FSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILR 118 Query: 120 MQKSKDENQ 128 + ++ + Sbjct: 119 RARKPEKAE 127 >gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +R++ R G+++ EA A + + +++D + G+ Sbjct: 6 NRILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDY-SIILLDVMLPGMDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 65 IEVCTRLRQ---TKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 235 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ R + G+ V A + EA E + + +++D + G Sbjct: 1 MTRILLVEDEESYRDPLSYQLGREGYDVVTAATGPEALERFAEHGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R +DV V L + D + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRRLRLD---SDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVL 116 Query: 119 QMQKSKDE 126 + + + Sbjct: 117 RRRDTSAR 124 >gi|15839182|ref|NP_299870.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|9107813|gb|AAF85390.1|AE004066_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c] Length = 266 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F +A+ EA + + +P+ +++D + G Sbjct: 38 KRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREA-QAVIADCVPDLILLDWMLPGTSG 96 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE R+ L ++ + L + + G AG + +++KPF+ L +R + + Sbjct: 97 LELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMR 156 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 157 RTRDDDED 164 >gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 224 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ H GF ++EA + +A + + + +++D M + Sbjct: 1 MPRILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDT-VKVDLVILDIMMPEID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++R+ D+ + L ++ + + G GA+ +L+KPF+ L ++ L Sbjct: 60 GWQLCHNIRK--YYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALL 117 Query: 119 QMQK 122 + + Sbjct: 118 RRYQ 121 >gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905] gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+++ + + ++ G++V A E E E+ PN +++D + Sbjct: 3 KTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAI-EIQPNLILLDLMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKQIRQQRM--NTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262] gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262] gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL J1-023] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA+ +A +++D M G + Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNY-EVILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 Query: 121 QKSKDEN 127 K E Sbjct: 122 AKQSSEE 128 >gi|320354561|ref|YP_004195900.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123063|gb|ADW18609.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 460 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+VD +R+ + L G+ V A A E EK + ++ D M G+ Sbjct: 3 MASILVVDDELSMREFLKILLEKEGYQVATAADGQAALERAEK-TAFDLVITDIRMPGMS 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R L D+ V + + + ++GA ++ KPFN + ++ +R + + Sbjct: 62 GLDLLARLKQLQADIGVIMITAFASPDDAVTAMKSGAFDYITKPFNVDEIKTVIRAVLKK 121 Query: 121 Q 121 + Sbjct: 122 R 122 >gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R G+ V A++ E + E P+ +V+D M V F Sbjct: 4 RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSED-PDVVVLDVMMPQVDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R G+ V L + + E + G GA+ +L+KPF E L +R L + + Sbjct: 63 EALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRK 121 >gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V T+ A E E P+ +V+D + G+ Sbjct: 5 RILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVE-RPDLIVLDLMLPGMDGL 63 Query: 63 IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ ++ + L + + ++ G GA+ ++ KPF+ + L +R + + Sbjct: 64 EVAKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAVLRR 123 Query: 121 QKSK 124 + ++ Sbjct: 124 KATE 127 >gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A+ EA + E E P+ +V+D + Sbjct: 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ L + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RSEMAA 125 >gi|226326821|ref|ZP_03802339.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198] gi|225204658|gb|EEG87012.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF V A+ +A + + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIASDGEQALKLLDAS--VDLLLLDIMMPRKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIETLKELRQNF---QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRSNWSEQKQ 125 >gi|220909969|ref|YP_002485280.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219866580|gb|ACL46919.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 1002 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + +R L ++ + V A + A E ++ LP+ ++ D M + F Sbjct: 647 RILLVDDNADMRDYVGRLLSER-WQVETAANGAIALERL-QQDLPDLVLTDVMMPEMDGF 704 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R PL + V L IAG AGA+ +L+KPF+ L + QM Sbjct: 705 QLLQVLRSDPLTQSIPVILLSARAGEVATIAGLAAGADDYLIKPFSARELIARVETQLQM 764 Query: 121 QKSKDEN 127 + + E Sbjct: 765 SRLRQEE 771 >gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 252 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LLV+ + + + GF V EA + E LP+ +++D + G Sbjct: 24 TRILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLD-ESLPDLVLLDWMLPGVSG 82 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R + + L + + I G GA+ +++KPF+ L +R L + Sbjct: 83 LEICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLR 142 Query: 120 MQK 122 + Sbjct: 143 RSR 145 >gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ ++++ GF+ A+ EA + ++ P+ +++D + Sbjct: 4 KILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQI-RDYAPDLILLDWMLPSTSGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R DV + L D + G +GA+ ++ KPF+ L +R + + Sbjct: 63 VLAKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVMRR 122 Query: 121 Q 121 Sbjct: 123 H 123 >gi|302866838|ref|YP_003835475.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503253|ref|YP_004082140.1| response regulator receiver modulated diguanylate cyclase [Micromonospora sp. L5] gi|302569697|gb|ADL45899.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409872|gb|ADU07989.1| response regulator receiver modulated diguanylate cyclase [Micromonospora sp. L5] Length = 318 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + + GF V A EA E E++ P+ V+D M LE Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGFEVLHAADGQEALEVIERQ-RPDLAVVDLMMPRIDGLE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P+ + + V L + + + G GA+ +L+KPF+ L + + Sbjct: 70 LTRRLRADPMTSALPVIMLTAKGMTQDKVNGLSVGADDYLVKPFDTLELVARVNSTLRRN 129 Query: 122 KSKDE 126 K E Sbjct: 130 KEFRE 134 >gi|108761373|ref|YP_630825.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108465253|gb|ABF90438.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 970 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++V+ +R L + V EA + + R+ +E P+ ++ D M + Sbjct: 599 RIMVVEDDPEIRSFLARLLAQH-YRVMEAINGDDGRQRALRE-RPDLILSDVMMPVMSGL 656 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P D+ V L + + G GAN +L KPF+ L + ++ Sbjct: 657 QMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPFSPNELLARIETQLRL 716 Query: 121 QKS---KDENQFLDAI 133 +++ EN+ L AI Sbjct: 717 REAAVRAAENERLAAI 732 >gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 233 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F EA + P+ +++D + G+ Sbjct: 5 QKILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHI-FHPDLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + + G GA+ +++KPF+ + L +R + + Sbjct: 64 YQVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] Length = 235 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD ++ K R G V A EA E K + +++D + Sbjct: 1 MAKILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEY-DMVLLDVMLPKHD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +D+ + L + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GYEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIM 116 Query: 119 QMQKSKDENQ 128 + +N+ Sbjct: 117 RRSGKNRKNR 126 >gi|189468013|ref|ZP_03016798.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM 17393] gi|189436277|gb|EDV05262.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM 17393] Length = 1451 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 59/126 (46%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R + + + V EA + E E +E +P+ ++ D M + Sbjct: 1191 SILIVEDNMELRSFLHTILS-ENYKVIEAINGQEGLERA-QEHVPDLIISDIMMPVMDGL 1248 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119 + ++++ + + L + + I+G G + ++ KPF+ L+ ++ L Q Sbjct: 1249 DMVKNIKENREICHIPIILLSAKSSLDDRISGLEQGIDDYITKPFSATYLKARIKSLLHQ 1308 Query: 120 MQKSKD 125 ++ +D Sbjct: 1309 RKQLQD 1314 >gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 233 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD VR+ R G+ V A +A E E+E P +++D M + Sbjct: 1 MK-VLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREH-PEIVILDVMMPRMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + L + + G AGA+ +L KPF E L +R L Sbjct: 59 GLEVCRTLRSQGDDRS--ILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLV 116 Query: 119 QMQKSKDEN 127 + + N Sbjct: 117 RRSAVESNN 125 >gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD ++ + G+ A+ A + P+ +++D + + Sbjct: 5 RILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAH-PDLIILDLMLPRMDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + L D ++ G GA+ ++ KPF+ L + L + Sbjct: 64 EVCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRR 123 Query: 121 QKSKDENQFL 130 + +E + + Sbjct: 124 TRMTEETRQI 133 >gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium HTCC2083] gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium HTCC2083] Length = 227 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+V+ R+V + G+ V + S E +E +P+ +V+D + + +E Sbjct: 6 ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGL-LLARENVPDLIVLDWMLPEMSGIE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+ + + L + + G GA+ ++ KP++ + L ++ + Sbjct: 65 VCRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRRT 124 Query: 122 KSKDENQFLD 131 + LD Sbjct: 125 RPAALGAQLD 134 >gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 241 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + + G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKG-QALAVQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V L + I G +GA+ +L KPF+ E + +R L Sbjct: 60 GFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|220908072|ref|YP_002483383.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7425] gi|219864683|gb|ACL45022.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7425] Length = 392 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL+D I++++ + + G+ V A+S E K P ++ D MEG+ Sbjct: 11 ILLIDDDRILQRILQKTLQEQGYDVSLASSGEAGLELV-KHTHPQLIICDWLMEGMDGLE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P F L E + G GA+ FL KP + L +R ++ Sbjct: 70 VCQRIKTDPDLDHPFFILLTSRSAVEDRVQGLNTGADDFLSKPIDPSELIARVRAGLRLY 129 Query: 122 KSKDENQFLD 131 +S E + L Sbjct: 130 QSNQELKQLA 139 >gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis CS] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ ++++ + G V A +A+ E LP+ +++D + G L Sbjct: 4 TILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAE-LPDLILLDWMLPGASGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V V L + + + G AGA+ ++ KPF+ + L ++ + + Sbjct: 63 SLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + + +D Sbjct: 123 RAPQLTDDIID 133 >gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM 30120] gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM 30120] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A + LP+ +++D + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLV-DPLPDLVLLDWMIPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+++ DV V L + E + G GA+ +L+KPF+ + L ++ + + Sbjct: 62 IQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + + R G+ V A E + + P+ L++D M + Sbjct: 3 QRIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSD-PDLLILDVMMPQMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + R G+ V V L D + + G GA+ +L+KPF E L +R L + + Sbjct: 62 WEVCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRK 121 Query: 122 KSKDE 126 + E Sbjct: 122 PDRQE 126 >gi|332297564|ref|YP_004439486.1| response regulator receiver modulated metal dependent phosphohydrolase [Treponema brennaborense DSM 12168] gi|332180667|gb|AEE16355.1| response regulator receiver modulated metal dependent phosphohydrolase [Treponema brennaborense DSM 12168] Length = 338 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 2/131 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L D S +R+ L + + V S EA E + +++D M G+ + Sbjct: 7 KILCADDSTSIRQYLTGLLTSWNYDVTACASGTEALEAYRTYSEYSVVLLDWIMPGMTGI 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R ++ L + E ++ AGA+ +L+KPF+ L+ ++ ++ Sbjct: 67 DVCRQIRAADKQGYTYIIMLTSKDSTENIVEALNAGADDYLIKPFHPAELQARIQTAFRI 126 Query: 121 QKSKDENQFLD 131 + + + + + Sbjct: 127 YQYEQKLKRTE 137 >gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 249 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V A + + +L P+ +++D + V Sbjct: 1 MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKG-QALAVQLQPDLVMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ + L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 218 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +DV + +L + + + G R G + +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRRYT 117 Query: 123 SKDENQFLD 131 +++ + + Sbjct: 118 KQEQQEEIQ 126 >gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ VF A EA + E+ P+ +++D + + Sbjct: 3 KKILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQV-NEVDPDLIILDLMLPKIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 62 LEVA-REVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120 >gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] Length = 239 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LLLV+ + ++ + F + G+ V + EA E +P+ +++D +EG + Sbjct: 15 KLLLVEDDPALAELLEYRFANEGYDVRVTSDGDEAL-LLAAEDVPDLVILDWMIEGTSGI 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + L + I G GA+ +L KPF+ L + + + Sbjct: 74 EVCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRR 133 Query: 121 QK 122 + Sbjct: 134 IR 135 >gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LLV+ R++ + GF V A + EA E LP+ +++D M +E Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAI-LLVAEALPDLIILDWMMPLLSGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ V L + + G GA+ +++KP++ L +R + Sbjct: 67 VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126 Query: 122 K 122 + Sbjct: 127 R 127 >gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e] gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland 1988] gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL R2-561] gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161] gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL J2-003] gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28] gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e] gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 237 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + N GF V+ A EA E E E+ P+ +++D + G Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119 Query: 120 MQ 121 Sbjct: 120 RH 121 >gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens TA208] Length = 235 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + G+ V A EA E E EL P+ +++D + Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVE-ELQPDLILLDIMLPNKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQ 121 Q Sbjct: 119 RQ 120 >gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 227 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ GF V A + A ++ + +++D + + Sbjct: 1 MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGA-DIVLLDLMLPEMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V + + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRQR---SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVL 116 Query: 119 QMQ 121 + Q Sbjct: 117 RRQ 119 >gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268] gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268] Length = 224 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 2/129 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++K+ + + V A + EA + KE +++D M + + Sbjct: 5 KILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEKSIALIILDVMMPKMDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + V V L + + G GA+ ++ KPF+ + L + L + Sbjct: 65 T-ALKTIREHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRSG 123 Query: 123 SKDENQFLD 131 + E + L+ Sbjct: 124 VQKE-ELLE 131 >gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032] gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032] Length = 240 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ + + + EA + EA + + + +++D M G Sbjct: 7 TKILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDY-DLILLDLMMPGTDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + L + + + G AG + +++KPF+ + ++ L + Sbjct: 66 IEVCNQIR---DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis] gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein Length = 243 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ G+ V A++ EA ++ P+ +V+D M Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEAL-LVFRKEYPSLVVLDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L + I G GA+ +++KPF+ + L +R + + Sbjct: 66 GVCQELRKE---SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122 >gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 230 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ + EA EA + P+ +++D + G Sbjct: 4 KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREA-HALIVDKHPDLVLLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ D+ + L +V+ + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 VELARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|298385028|ref|ZP_06994587.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298262172|gb|EFI05037.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1450 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + ++ +++ + + V A + E + +P+ ++ D M + Sbjct: 1192 TILVVEDNEELKAFLKNILS-ENYTVITAPNGKEGLQHAVDN-IPDLIISDVMMPVMDGL 1249 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1250 EMIRKIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309 Query: 121 QKSKDE 126 +KS E Sbjct: 1310 RKSLQE 1315 >gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis] gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 240 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A+ EA + E E P+ +V+D + Sbjct: 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ L + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RSEIAA 125 >gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V + G+ V A A+E PN +V+D + G+ Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPNLVVLDMMLPGIDGM 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + ++V V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 123 SKDEN 127 ++ + Sbjct: 125 GEEPD 129 >gi|90409613|ref|ZP_01217630.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] gi|90328966|gb|EAS45223.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] Length = 241 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ GF V A E + P+ +++D M G Sbjct: 5 KKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRL-ASGYPDLILMDVMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++R+ +DV + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 64 FTLCQYIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLR 120 Query: 120 MQK 122 K Sbjct: 121 RVK 123 >gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 227 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + + + G+ + EA++ EA E + +++D M + Sbjct: 1 MKTNILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEAL-ILINENNFDLIILDVMMPVL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A ++ + + +L + + I G GA+ ++ KPF L ++ + Sbjct: 60 DGISACLKIREDY-TMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQLR 118 Query: 120 MQK 122 K Sbjct: 119 RYK 121 >gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 234 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + ++ R F A + +A EF +L P+ +V+D + L Sbjct: 2 NILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFF-GQLQPDVIVLDIMLPELDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P D ++ L + I G GA+ +L+KPF+ L +R L + Sbjct: 61 EVCTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120 >gi|117620062|ref|YP_854674.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561469|gb|ABK38417.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 244 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ GF V A E + P+ +++D M G Sbjct: 9 KQLLIVDDDQEIRELLNEYLTRAGFEVLTAAEGNE-MRKLLAQHNPDLIILDIMMPGDDG 67 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V + L D + G GA+ ++ KPF+ L+ ++ L + Sbjct: 68 FTLCQQIRRD---SQVPIIMLTAASDEADRVIGLELGADDYITKPFSPRELQARIKALLR 124 Query: 120 MQKSKDENQ 128 + + + Sbjct: 125 RAEFRQPEK 133 >gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDE 126 K +DE Sbjct: 120 RTKLQDE 126 >gi|330962192|gb|EGH62452.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 245 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGA-GFRQAFNEASSDLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+VD + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|172038635|ref|YP_001805136.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700089|gb|ACB53070.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 377 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + ++ + ++ G+ V +A + A ++ P+ +++D +M + Sbjct: 7 NILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTI-HQVAPDLILLDINMPSMNGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ + ++ D + G ++ KPF E + + + Sbjct: 66 EVCQQLKDDPDTKDIPIIFISALDDVLDKVKAFELGGVDYITKPFQAEEVIARIENQLTI 125 Query: 121 QKSKDENQF 129 Q+ K + Q Sbjct: 126 QRQKKQLQQ 134 >gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii] Length = 238 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + D G+ V A E + LV+D + G+ Sbjct: 3 KRILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRW-DALVLDLMLPGIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 62 LEICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRT 121 Query: 122 KSKDENQFLDA 132 + + N LDA Sbjct: 122 DALERNARLDA 132 >gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42] gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42] gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens LL3] Length = 240 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ R +++ EA + EA + + +++D M G Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDY-DLVLLDLMMPGTDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + L + + + G AG + +++KPF+ + ++ L + Sbjct: 66 IEVCRQLREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555] gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555] Length = 231 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + + G+ A+ EA + KE P +++D + G+ Sbjct: 5 KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIA-KEERPKLILLDVMLPGMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 64 DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 123 >gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter denitrificans OCh 114] gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter denitrificans OCh 114] Length = 229 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ R+V + GF V A + EA E P+ +V+D M +E Sbjct: 8 VLVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAM-MLVDETAPDLIVLDWMMPNLSGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + L + + G GA+ +++KP++ L +R + Sbjct: 67 VCRRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLRRV 126 Query: 122 KSKDENQFLD 131 + L+ Sbjct: 127 RPAATGGQLE 136 >gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 222 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +RK+ R G++V EA A + + +++D M + Sbjct: 3 NKILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNNDIDLIIMDVMMPKMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR++ V + L + + + + G G + ++ KPF+ + L + L + Sbjct: 63 WQLCKEVRKLSK---VPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] Length = 233 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 8/139 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59 M +L+V+ +R+ G+ V EA S A + E+ + ++D M G+ Sbjct: 1 MKRILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGI 60 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++ + L + + G GA+ ++ KPF+ L + L Sbjct: 61 DGLTVCKELRKKSG--NLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSL 118 Query: 118 PQM---QKSKDENQFLDAI 133 + + ++EN F + + Sbjct: 119 YRRVAIAEMREENNFQEEL 137 >gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB [Marinobacter algicola DG893] gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB [Marinobacter algicola DG893] Length = 230 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ + EA EA + P+ +++D + G Sbjct: 4 KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREA-HALIVDKQPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ ++ + L +V+ + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 VELARRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+++ + + ++ G++V A E E +L PN +++D + Sbjct: 3 KTILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAI-DLQPNLILLDLMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKQIRQQRM--NTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 231 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + G+ V + A E + L P+ +++D + G+ Sbjct: 9 RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPR-LRPDLVLLDLMLPGMDGI 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L D ++ G AGA+ +L KPF E L ++ + Sbjct: 68 EVCRRLRRESG---VPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRR 124 Query: 121 QKSKDENQF 129 + Q Sbjct: 125 SEEPTTEQL 133 >gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + +V G+ + EA + P+ +++D + G + Sbjct: 7 KVLIVDDDENICEVINMYLISAGYETRRCHNGREACAVF-GDFKPDLVLLDIMLPGVDGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ + V L + D + GA+ +++KPF + L ++ + + Sbjct: 66 EVLKWIRKSSE---IPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRR 122 Query: 121 QKSKDEN 127 ++N Sbjct: 123 YNYDEKN 129 >gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Taylorella equigenitalis MCE9] gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Taylorella equigenitalis MCE9] Length = 233 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ ++++ G V A +A + LP+ +++D + L Sbjct: 4 TILVVEDEPAIQELISVNLTFAGHKVLRALDAQQA-KILIDAELPDLILLDWMLPTTSGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R D+ + L + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 SLARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 235 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + + G+ V A +A E E LP+ +++D + Sbjct: 5 RILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAET-TLPDLVILDLMLPKLDGW 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + + L D + ++AG GA+ +L KPF+ L ++ + Sbjct: 64 EVCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRA 123 Query: 121 Q 121 + Sbjct: 124 R 124 >gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 228 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 2/131 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ + + R + G+ V + EA E L P LV+D + G+ Sbjct: 1 MPRPILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLE-HLEPALLVLDVRLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + D+ V L D E + G RAGA+ +L KPF E L + L + Sbjct: 60 DGVEVCRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLR 119 Query: 120 MQKSKDENQFL 130 K + L Sbjct: 120 RSKRQPTRHLL 130 >gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] Length = 231 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 7/136 (5%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD +RK+ R + V EA++ EA + + + +++D M Sbjct: 7 MKQLKILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMPK 66 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R++ V + L + + + G G + ++ KPF+ L + Sbjct: 67 MDGWEACREIRKISK---VPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDA 123 Query: 117 LPQMQKSKDENQFLDA 132 + + + ++Q A Sbjct: 124 ILRRTNNIGQDQIEQA 139 >gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 256 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R++ + G+ + A +A + P+ +++D + G+ F Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTY-RLFKPSLVILDVMLPGIDGF 89 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L + G AGA+ +L KPF L M+ L + Sbjct: 90 ELCRLIRTESS---VPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 121 QKSKDEN 127 ++++ Sbjct: 147 SQTQNSQ 153 >gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V + G+ V A A+E P+ +V+D + G+ Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPSLVVLDMMLPGIDGM 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + ++V V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 123 SKDEN 127 ++ + Sbjct: 125 GEEPD 129 >gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 227 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ G+ + E E + L P+ +++D + G+L Sbjct: 1 MPVILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANR-LQPDLILLDLMLPGML 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + V L + + G GA+ +++KPF+ L ++ + Sbjct: 60 GTDVCKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAIL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ R + + EA + EA E + +++D M G Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITK-GLEANYDLILLDLMMPGTDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + L + + + G AG + +++KPF+ + ++ L + Sbjct: 66 IEVCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 229 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + + A EA + + +P+ +++D + G Sbjct: 3 KQILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREA-QAAIADRVPDMILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE R+ L +V + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 122 RSREDDED 129 >gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 231 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R+ GF+V A +A E E +P+ +++D + G +E Sbjct: 3 VLIVEDEEALTTLLRYNLEAEGFLVDSAARGDDA-ELLLAERIPDLVLLDWMLPGLSGIE 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L + + G GA+ +++KPF+ L +R L + Sbjct: 62 LCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRRA 121 Query: 122 KSKDENQFLDA 132 K + L A Sbjct: 122 KPAHVSDRLAA 132 >gi|168069753|ref|XP_001786566.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660993|gb|EDQ48622.1| predicted protein [Physcomitrella patens subsp. patens] Length = 717 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + +V R+L G+ + A++ EA E + + ++ D M G+ L Sbjct: 401 TVLMVDDDPVNLQVLRNLLALEGYRLMTASNGQEALEKIQSGQSIDLVIADWMMPGMSGL 460 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR+ + + + L E + G AGAN FL KP + E LR +R L ++ Sbjct: 461 DLCRSVRRQFSLSALPILLLTARSLPEDVRIGLSAGANDFLRKPVDAEELRARVRTLLEL 520 Query: 121 QKS-----KDENQFLDA 132 ++S E FL A Sbjct: 521 RRSVRNAISAEMAFLQA 537 >gi|153829131|ref|ZP_01981798.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148875389|gb|EDL73524.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 1177 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 889 ASKAELRRIE 898 >gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37] gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R G V A A +E P+ +V+D + + F Sbjct: 2 KILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRET-PDLIVLDIGLPEMDGF 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +DV V +L D I G GA+ ++ KPF+ + + + + Sbjct: 61 EVCRRLRAR---SDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRR 117 >gi|260223180|emb|CBA33484.1| hypothetical protein Csp_B19290 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 396 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + +R+ + + GF V A EA + P+ ++ D M G+ F Sbjct: 14 KILIAEDEPSLRENLQWMLELEGFEVLAACDGLEALAMAQTHK-PDLVLTDVMMPGLDGF 72 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ P + + + L D G GA+ +L KP RE L A+ + Sbjct: 73 GLVKALRENPGSSTLPIIMLTARADRTDTRTGMNLGADDYLTKPCRREELLEAVHARLER 132 Query: 121 QKSKD 125 + + Sbjct: 133 SRIQQ 137 >gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ H + + R G++V A S E + P+ +++D + + Sbjct: 7 RILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNP-PDLVILDLMLPEMSGE 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ L D+ + L + E IAG AGA+ ++ KPFN E L +R + Sbjct: 66 EVCRRLRE-GLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRR 124 Query: 121 QKSKDE 126 ++ +++ Sbjct: 125 RQPQEK 130 >gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + G++V EA +A + ++ + +++D M + + Sbjct: 15 KVLMVDDESRMRKLVKDFLTREGYIVLEAGDGEQALDIFMEDKNISLVILDVMMPKMDGW 74 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ + V V L + D + G G + ++ KPF+ + L + + + Sbjct: 75 -ETLKEIRKFSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRRTS 133 Query: 123 SKDENQFLDA 132 + L A Sbjct: 134 DAASEERLSA 143 >gi|254247533|ref|ZP_04940854.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184] gi|124872309|gb|EAY64025.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184] Length = 256 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 16 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 74 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 75 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 134 Query: 120 MQKS 123 +++ Sbjct: 135 RRRA 138 >gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 229 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R+V + G+ V EA EA + E + +V+D M + Sbjct: 5 RVLVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESW-DLIVLDVMMPKMDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V + L + D I G GA+ ++ KPF+ L ++ + + Sbjct: 64 TVCQEIRKVSK---VPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRR 120 Query: 121 QKSKDENQ 128 ++++ + Sbjct: 121 VGTEEKKE 128 >gi|260771832|ref|ZP_05880750.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio metschnikovii CIP 69.14] gi|260613124|gb|EEX38325.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio metschnikovii CIP 69.14] Length = 1139 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A E E KE P L++D M G+ Sbjct: 734 LLIADDEPVNLRVLDSFLRLEGYRVRTALDGHEVIEAIAKEK-PELLLLDVMMPGMSGYQ 792 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + L + I G AGAN +L KPFN++ L ++ Sbjct: 793 VCEQLREQYDHAQLPIIMLTALTQSDDRIRGFAAGANDYLSKPFNKQELAARIKAHL--S 850 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 851 ASKAEQRRIE 860 >gi|254251724|ref|ZP_04945042.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158] gi|124894333|gb|EAY68213.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158] Length = 256 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 16 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 74 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 75 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 134 Query: 120 MQKS 123 +++ Sbjct: 135 RRRA 138 >gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 232 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ N G++V EA S EA + K L P+ +V+D + G+ F Sbjct: 7 KILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKL-KMLDPDIVVLDIMLPGIDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V L I G GA+ +++KPFN L ++ + + + Sbjct: 66 EVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRRRN 125 Query: 123 SKDENQF 129 E + Sbjct: 126 GPKETKQ 132 >gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 235 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ +R++ + GF V A++ EA E + +V+D + Sbjct: 1 MGKILIVEDEKNIRELVKFNLEGAGFKVLTASNGKEALEKISTN--IDLVVLDLMLPEID 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + + L + + + I G GA+ ++ KPF+ L ++ + Sbjct: 59 GMEVCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIF 118 Query: 119 QMQKSKDENQ 128 + + ++ Sbjct: 119 RRMEELKLDK 128 >gi|15640642|ref|NP_230271.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587963|ref|ZP_01677717.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|121728271|ref|ZP_01681303.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|147675649|ref|YP_001216115.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|153818929|ref|ZP_01971596.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|153822991|ref|ZP_01975658.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227080803|ref|YP_002809354.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|254850855|ref|ZP_05240205.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|298500739|ref|ZP_07010542.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|9655056|gb|AAF93788.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547810|gb|EAX57898.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|121629465|gb|EAX61892.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|126510546|gb|EAZ73140.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|126519498|gb|EAZ76721.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|146317532|gb|ABQ22071.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|227008691|gb|ACP04903.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|227012447|gb|ACP08657.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|254846560|gb|EET24974.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|297540520|gb|EFH76578.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 1177 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 889 ASKAELRRIE 898 >gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545] Length = 234 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QK 122 + Sbjct: 119 SQ 120 >gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA3] gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA2] gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL097PA1] gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL099PA1] gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266] Length = 232 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD VR+ G+ V A EA P+ +++D M + Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHL-SGTHPDAVIMDVMMPRLDGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A G DV + L + + G AGA+ +++KPF + L +R L + + Sbjct: 64 ATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123 Query: 124 KDEN 127 + E Sbjct: 124 EPEQ 127 >gi|153801748|ref|ZP_01956334.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|153825707|ref|ZP_01978374.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|254291241|ref|ZP_04962036.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|124122713|gb|EAY41456.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|149740644|gb|EDM54753.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|150422805|gb|EDN14757.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 1177 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 889 ASKAELRRIE 898 >gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 237 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++R ++V A E EK + +++D + + Sbjct: 6 KKILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKH-AFDLVILDLMLPKLSG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R ++V + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 65 ERVCRAIR---DTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFR 121 Query: 120 MQKSK 124 S+ Sbjct: 122 RTYSE 126 >gi|254226732|ref|ZP_04920308.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] gi|125620749|gb|EAZ49107.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] Length = 1177 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 889 ASKAELRRIE 898 >gi|120434408|ref|YP_860117.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117576558|emb|CAL65027.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 1352 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + +RK L + V E + EA E + P+ ++ D M + Sbjct: 1107 SILIVEDNKEIRKYISGLLKPY-CRVIEVENGKEALEEI-TQNQPDLIISDIMMPIMDGV 1164 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + G GA++++ KPFN E L ++ L + Sbjct: 1165 SLTRKLKTSTETSHIPVILLTARATSIQRMEGYETGADAYITKPFNEEMLMIRIKNLLRN 1224 Query: 121 QKSKDE 126 + E Sbjct: 1225 RNLLQE 1230 >gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus COL] gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus JH1] gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719] gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299] gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115] gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300] gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 132] gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819] gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MR1] gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus COL] gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719] gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299] gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115] gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300] gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus TW20] gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 04-02981] gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819] gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus T0131] gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21172] gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21189] gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21193] Length = 234 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD H + + ++ G+ V A EA E E E P+ +++D + Sbjct: 3 QKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESE-QPDLIILDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ VR V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLD 131 + E + +D Sbjct: 120 RSQFVKEVEEID 131 >gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 227 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ VR V R GF V A +A E + P+ +++D + Sbjct: 6 ILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTA-VNPDLVILDIMLPKKDGWS 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 65 VCREIRRQTA---VPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRS 121 Query: 122 KS 123 + Sbjct: 122 NA 123 >gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e] gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 1/2a F6854] gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes HCC23] gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes Finland 1988] gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL R2-561] gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes 10403S] gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes J0161] gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818] gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900] gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL J2-003] gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578] gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923] gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071] gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e] gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 1/2a F6854] gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes HCC23] gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900] gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578] gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923] gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071] gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818] gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 238 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA+ +A +++D M G + Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNY-EVILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 Query: 121 QKSKDEN 127 K E Sbjct: 122 AKQSSEE 128 >gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E+ + + +++D + + Sbjct: 3 KKILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARR-CEYDLVLLDVMLPKLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D+ + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FQVCQQIRE---FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDEN 127 + E Sbjct: 119 RTAKRKEE 126 >gi|297583783|ref|YP_003699563.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142240|gb|ADH98997.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 56/131 (42%), Gaps = 2/131 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + D G+ +A + E + + + + +++D M + Sbjct: 7 TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKV-DLVLLDVMMPEMDGM 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ + V + + D + G R+GA+ +++KPF+ + L + + Sbjct: 66 -EALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNY 124 Query: 123 SKDENQFLDAI 133 ++++ + + Sbjct: 125 GYNDDESKEEL 135 >gi|119511790|ref|ZP_01630892.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463563|gb|EAW44498.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 378 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D ++ + + + G+ V A++ E P ++ D M G Sbjct: 1 MFQILVIDDDISIQTLLKRMLEKQGYKVVAASNGEEGIAQAIA-YQPALVICDWIMPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ P + F +L + G AGA+ F+ KP + L+ +R Sbjct: 60 GLEVCKRMKTDPNLSTTFFIFLTSLDSIADRVKGLDAGADDFISKPIEQNELKARVRAGL 119 Query: 119 QMQKSKDEN 127 ++ + + Sbjct: 120 RLHQLSQDL 128 >gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 230 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + + + + G+ V A EA E P+ +++D + +E Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLA-SERAPDLVILDWMLPKVSGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +V + L + I G GA+ +++KPF+ L +R + + Sbjct: 64 VCRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMRRI 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 238 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA + + + P+ +V+D + Sbjct: 3 QKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDA-VQPDLVVLDVMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKS 123 + Sbjct: 120 RSQQ 123 >gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42] gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42] gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens LL3] Length = 236 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + G+ V A EA E E EL P+ +++D + Sbjct: 4 KKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVE-ELQPDLILLDIMLPNKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQ 121 Q Sbjct: 120 RQ 121 >gi|154493674|ref|ZP_02032994.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184] gi|154086884|gb|EDN85929.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184] Length = 1348 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 ++LL D + V + + ++V +A + EA E E P+ ++ D M + Sbjct: 1097 QTVLLADDNQEVLQYLEQQLS-LDYIVVKAFNGKEALAMIE-ESYPHIVISDIMMPEMNG 1154 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +++ + V L + ++ G AGA+ +++KPF L+ +R L Sbjct: 1155 LELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNLLS 1214 Query: 120 MQKSKDEN 127 +++ Sbjct: 1215 LREKMKTM 1222 >gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] Length = 230 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ + EA EA + P+ +++D + G Sbjct: 4 KQVLIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQK-PDLILLDWMLPGVSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +EF +++ +++ + L + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 IEFARRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + ++ + GF + A + K P+ +++D + G++ Sbjct: 1 MQTVLIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAK-PDLILLDLMLPGMM 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + + L + + + G GA+ +++KPF+ L +R + Sbjct: 60 GTEVCRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVL 119 Query: 119 QMQKSK 124 + + Sbjct: 120 RRSSEQ 125 >gi|86135169|ref|ZP_01053751.1| two-component system response regulator [Polaribacter sp. MED152] gi|85822032|gb|EAQ43179.1| two-component system response regulator [Polaribacter sp. MED152] Length = 229 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + ++ + + G+ VF A + EA + +K P+ +++D M + Sbjct: 7 KILLVDDEPDILEIVGYNLRNEGYQVFTAENGQEAIKSAKKNT-PHLILLDIMMPEMDGI 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +V + +L + +AG AGA+ ++ KP + L ++ L + Sbjct: 66 EACEKIRKIKNLDNVIIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKIKSLLRR 125 Query: 121 QKSKDENQ 128 KS++E++ Sbjct: 126 LKSEEESE 133 >gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] Length = 229 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+++ R+V + F G+ V A + A +E P+ +V+D + G +E Sbjct: 8 ILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEP-PDLIVLDWMLPGVSGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V L + + G GA+ ++ KP++ L R + Sbjct: 67 ICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRRT 126 Query: 122 K 122 + Sbjct: 127 R 127 >gi|300714679|ref|YP_003739482.1| two-component response regulator [Erwinia billingiae Eb661] gi|299060515|emb|CAX57622.1| Two-component response regulator [Erwinia billingiae Eb661] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFDVLVAGDGEQALTLI--DNTIDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQF 129 + ++ Q Sbjct: 116 RRSNWSEQQQQ 126 >gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59 M +L+ + +R+ G+ V + +A + E E + +++D M G+ Sbjct: 1 MKRILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + + + + L ++G GA+ ++ KPF+ L + + + Sbjct: 61 DGFTVCKKIREKSSTIGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAIYR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2] gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 243 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + GF V A A + +V+D M G Sbjct: 10 KVLVVDDDARIRDLLHRYLTQEGFDVMAAEDGK-ALNRLLLRETVDIIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 123 SKD 125 +++ Sbjct: 129 AQE 131 >gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] Length = 229 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LLLV+ + ++ + F + G+ V + EA E +P+ +++D +EG + Sbjct: 5 KLLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEAL-LMASEDVPDLVILDWMIEGTSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + L + + G GA+ +++KPF+ L + + + Sbjct: 64 EVCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMRR 123 Query: 121 QKSKDENQFLDA 132 + + + A Sbjct: 124 IRPALAGETIQA 135 >gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 231 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ + GF A + EA E + + +V+D + Sbjct: 3 KRILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEAS-MYDLIVLDLMLPEVDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + + + L + + + G GA+ +L KPF+ + + ++ + + Sbjct: 62 MEVCRTLRMNQV--NTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILR 119 Query: 120 MQKS 123 + Sbjct: 120 RSQL 123 >gi|262163963|ref|ZP_06031702.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio mimicus VM223] gi|262027491|gb|EEY46157.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio mimicus VM223] Length = 1177 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A E E ++E P L++D M G+ Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREK-PELLLLDIMMPGMSGYQ 830 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 889 ASKAELRRIE 898 >gi|258623081|ref|ZP_05718094.1| sensory box sensor histidine kinase/response regulator [Vibrio mimicus VM573] gi|258584694|gb|EEW09430.1| sensory box sensor histidine kinase/response regulator [Vibrio mimicus VM573] Length = 1177 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A E E ++E P L++D M G+ Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREK-PELLLLDIMMPGMSGYQ 830 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 889 ASKAELRRIE 898 >gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB [Thalassiobium sp. R2A62] gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB [Thalassiobium sp. R2A62] Length = 229 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ R+V + GF+V A EA E+ P+ +V+D + +E Sbjct: 8 VLVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEAL-MLIDEVAPDVIVLDWMLPNVSGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ + L + + G GA+ +++KP++ L +R + Sbjct: 67 VCRQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRRV 126 Query: 122 KSKDENQFL 130 + Q L Sbjct: 127 RPTTMGQVL 135 >gi|188532256|ref|YP_001906053.1| DNA-binding transcriptional regulator CpxR [Erwinia tasmaniensis Et1/99] gi|188027298|emb|CAO95141.1| Two-component response regulator [Erwinia tasmaniensis Et1/99] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALALL--DNTVDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRSNWSEQQQ 125 >gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] Length = 229 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LLV+ R++ + GF V A + EA E LP+ +++D M +E Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAI-LLVAEALPDLIILDWMMPLLSGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ V L + + G GA+ +++KP++ L +R + Sbjct: 67 VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126 Query: 122 K 122 + Sbjct: 127 R 127 >gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 239 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A + +A E P+ V+D + + F Sbjct: 12 KLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELH-APDLAVLDVMLPDMDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L + D E + G G + ++ KPF+ + + +R + + + Sbjct: 71 TVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130 >gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 227 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ G+ + +AT +A E + P+ ++D M + Sbjct: 1 MAKILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEA-VRPDMAIMDIMMPRMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G D+ + L + + + GA+ +L+KPF+ L ++ L Sbjct: 60 GWALCEALR-DSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALL 118 Query: 119 QMQK 122 + K Sbjct: 119 KRYK 122 >gi|332827076|gb|EGJ99861.1| hypothetical protein HMPREF9455_03734 [Dysgonomonas gadei ATCC BAA-286] Length = 1355 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLV+ + + + ++ + + V A++ EA + K+ + ++ D M + Sbjct: 1108 VLLVEDNEELLTLIGNILSKH-YHVLTASNGVEALDRV-KDNDIDIVISDVMMPRMDGLE 1165 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + I AGA+ ++ KPF + L + + Sbjct: 1166 LCRRLKKDIETSHIPVILLTAKNSADDRIECYNAGADGYISKPFELKVLEARINNFLTNK 1225 Query: 122 KSKDEN 127 K + + Sbjct: 1226 KDRQKE 1231 >gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 225 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + G+ V EA EA + ++ +++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFYEQNDIALIILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREVRMHSK---VPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 ++ +DA Sbjct: 122 TNVFAADEVVDA 133 >gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] Length = 223 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ + ++ + + G+ V EARE + + +V+D + G Sbjct: 1 MARVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKY-DIIVLDLMLPGVN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ VR + D + L D + + G AGA+ ++ KPF+ + L + + Sbjct: 60 GLDLCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVL 119 Query: 119 QMQKSKDENQF 129 + + +F Sbjct: 120 RRAGYSEVLEF 130 >gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603] Length = 236 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA + E P+ +V+D + Sbjct: 3 QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELS-QPDLIVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLD 131 + +E + + Sbjct: 120 RSQFVNEVEQSE 131 >gi|260221594|emb|CBA30315.1| hypothetical protein Csp_C22930 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 433 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + + L D + V A + A + E P+ +++D M G+ Sbjct: 59 TVLVVDDTPENLLLMQSLLRD-DYKVKGANNGERALKIVAGEAPPDLILLDIMMPGMDGY 117 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V +L + E G GA ++ KP + + +R + Sbjct: 118 EVCRRIKADPKARHIPVIFLTAKSQTEDEAFGLSLGAADYITKPISPPIVLARVRNQLAV 177 Query: 121 QK----SKDENQFLDA 132 + +D+N+FL++ Sbjct: 178 KASADFLRDQNEFLES 193 >gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F EA E PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFES-YQPNLMLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + + + G GA+ ++LKPF+ + L ++ + + Sbjct: 64 YQVCREIRSK---HNTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RYQ 123 >gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F EA + PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFD-NYSPNLVLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +D + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRAK---SDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQKSKDEN 127 ++ + Sbjct: 121 RYQAPRQE 128 >gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 240 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ +R++ + GF A +A + E LP+ +++D + G + Sbjct: 5 NILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDA-QKALDEALPDLILLDWMLPGVSGV 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E+ +++ P+ ++ + L + E + G GA+ ++ KPF+ + L +R + + Sbjct: 64 EWARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRR 123 >gi|237799889|ref|ZP_04588350.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806381|ref|ZP_04593085.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022744|gb|EGI02801.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027494|gb|EGI07549.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 245 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + E + L++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEASSDLLILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|198274045|ref|ZP_03206577.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135] gi|198273123|gb|EDY97392.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135] Length = 1367 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R F D + V A + E + E +P+ +V D M + Sbjct: 1098 ILVVEDNADIRDYIADSFTDL-YEVKTAANGKEGLQIA-TECIPDIVVSDIMMPVMNGIM 1155 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L + G +AGA+S+L KPF+ L+ + L + Sbjct: 1156 MCQKLKADMRTSHIPVILLTAKDSITDKEEGYQAGADSYLTKPFSASLLQSRISNLLTQR 1215 Query: 122 KSKDE 126 + E Sbjct: 1216 RLLSE 1220 >gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5] gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5] Length = 249 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E+ + + +++D + + Sbjct: 24 KKILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYA-RNCEYDLVLLDVMLPKLDG 82 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D+ V L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 83 FQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 139 Query: 120 MQKSKDE 126 ++E Sbjct: 140 RTAKREE 146 >gi|269140794|ref|YP_003297495.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Edwardsiella tarda EIB202] gi|267986455|gb|ACY86284.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Edwardsiella tarda EIB202] gi|304560554|gb|ADM43218.1| Copper-sensing two-component system response regulator CpxR [Edwardsiella tarda FL6-60] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L + GF V A +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDAS--IDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQFLDA 132 + ++ Q D+ Sbjct: 116 RRSNWNEQQQNSDS 129 >gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 7/128 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+ D + ++ R G+ V A EA E P+ +++D M + Sbjct: 5 KILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAE-APDLILLDIMMPKLDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D + + + + + G G++ +++KPF+ + + ++ + + Sbjct: 64 QVCREIRKK---SDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRR 120 Query: 121 -QKSKDEN 127 KS EN Sbjct: 121 ASKSSAEN 128 >gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 248 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A EA C +E P+ +V+D M Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALT-CFQECEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + ++ Sbjct: 126 VEKEN 130 >gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system with phor [Ralstonia solanacearum CFBP2957] gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum CFBP2957] Length = 237 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G A + +A ++LP+ +++D + G Sbjct: 4 SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + I G GA+ ++ KPF+ + L ++ + + Sbjct: 63 MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 237 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R++ + + V +A + A + + + +V+D M G+ Sbjct: 6 RILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKAL-DYDYDLIVLDLMMPGMDGI 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + + + G AG + +++KPF+ + ++ L + Sbjct: 65 EVCEKIRKQ---KATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|158521788|ref|YP_001529658.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510614|gb|ABW67581.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfococcus oleovorans Hxd3] Length = 465 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + + G+ V A + +A E K+ ++++ D M + Sbjct: 9 KNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQP-FDFILCDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + D V + + + + GA ++ KPF + + A+++ + + Sbjct: 68 LAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASERE 127 Query: 122 KSKDEN 127 + K EN Sbjct: 128 RLKREN 133 >gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 231 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ GF A A E P+ +V+D + V Sbjct: 3 QRILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTE-RPDLMVLDLMLPDVDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R P + + L VD I G GA+ ++ KPFN + +R + + Sbjct: 62 ADLTRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB [Enhydrobacter aerosaccus SK60] gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB [Enhydrobacter aerosaccus SK60] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+V+ +R++ GF +A+ V +A + PN +++D + Sbjct: 1 MKNETILVVEDEPAIREMIVTTLEMAGFDCLQASEVSQA-HHLVVDHRPNLILLDWMLPN 59 Query: 59 V---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 ++ +++ + +++ + L + + + + G AGA+ ++ KPF+ L ++ Sbjct: 60 GLSGIDLCRRLKKDEMLSEIPIIMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIK 119 Query: 116 ELPQMQKSKD 125 + + + Sbjct: 120 AVLRRSSALS 129 >gi|254411506|ref|ZP_05025283.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182007|gb|EDX76994.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 419 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L VD V+ + + L G V A A + +E P+ ++ D M Sbjct: 1 MAKILAVDDDITVQIILQELLESEGHDVLLADDGEAALQK-TQEFQPDLIICDWMMPKLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ P +F+ + + + G +GA+ FL KP L+ +R Sbjct: 60 GLELCRRIKADPQLATIFLILITIREQVADRVQGLDSGADDFLSKPIEPSELQARVRSGL 119 Query: 119 QMQKSKDEN 127 ++++ + Sbjct: 120 RLRQLNQQL 128 >gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] Length = 240 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ + + + EA + EA + + + +++D M G Sbjct: 7 TKILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDY-DLILLDLMMPGTDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + L + + + G AG + +++KPF+ + ++ L + Sbjct: 66 IEVCNQIR---DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 226 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + GF V A++ +A E ++ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V L + + G GA+ ++ KPF+ L MR + Sbjct: 60 GTEVCRELRAR---SNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGDAEE 124 >gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 247 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + V R GF V A A E P+ +++D + G+ Sbjct: 16 RRILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLA-AERHPDLVLLDRMLPGLDG 74 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ V V L + I G GA+ ++ KPF+ L +R + + Sbjct: 75 VEVCRRLRQ---TMSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLR 131 Query: 120 M 120 Sbjct: 132 R 132 >gi|54303563|ref|YP_133556.1| putative DNA-binding response regulator [Photobacterium profundum SS9] gi|46916994|emb|CAG23756.1| putative DNA-binding response regulator [Photobacterium profundum SS9] Length = 241 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ GF V A E + P+ +++D M G Sbjct: 5 KKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRL-AGGYPDLILMDVMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++R+ +DV + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 64 FTLCQYIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLR 120 Query: 120 MQK 122 K Sbjct: 121 RVK 123 >gi|84393815|ref|ZP_00992561.1| Sensory box sensor histidine kinase/response regulator [Vibrio splendidus 12B01] gi|84375555|gb|EAP92456.1| Sensory box sensor histidine kinase/response regulator [Vibrio splendidus 12B01] Length = 1129 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V A E E EKE P L++D M G+ Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEK-PELLLLDIMMPGMSGYQVC 785 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R+ + + L E + G AGAN +L KPFN++ L + S Sbjct: 786 EALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL--SAS 843 Query: 124 KDENQFLD 131 K E + L+ Sbjct: 844 KAEQRRLE 851 >gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ VR+V R D G+ V E + E P+ +V+D + G+ Sbjct: 6 RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGL-WWAVEHAPDAVVLDLMLPGMDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L + E + G + GA+ +++KPF+ L + + + Sbjct: 65 QVCRELRARR--PQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRR 122 Query: 121 QKSKD 125 + Sbjct: 123 SAPEA 127 >gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus pseudintermedius ED99] Length = 234 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA + EKE P+ +V+D + Sbjct: 3 QRVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQK-EKETKPDLIVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKTIRSDKN--QVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQ 128 D + Sbjct: 120 RSSLVDHVR 128 >gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 239 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + ++ G+ V +A EA + E + ++D + G+ Sbjct: 4 KSILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNET-DMFIVDIMLPGMDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++R V +L + + + G GA+ ++ KPF+ + +R + + Sbjct: 63 FELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFR 122 Query: 120 MQKSKDENQ 128 + + + Sbjct: 123 RIQQSAQAK 131 >gi|300863635|ref|ZP_07108575.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506] gi|300338377|emb|CBN53719.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506] Length = 945 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD + +R + F V A + E E K P+ +V D M L Sbjct: 594 TVLVVDDNPDLRTYVARILRQANFSVVLARNGAEGLEMA-KSDDPDVIVTDLMMPVVSGL 652 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + I +R+ + V L + D + I G GA+++L KPFN L +R L + Sbjct: 653 DLIRMIREDDVLKGTPVILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLVAL 712 Query: 121 QKSKDENQFLD 131 ++++ Q L+ Sbjct: 713 KQNERRVQQLN 723 >gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 229 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E + + +++D + + Sbjct: 3 RKVLVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEY-DIILLDLMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 LEVCQQIRE---FSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIR 118 Query: 120 MQKSKDENQ 128 SK + Q Sbjct: 119 RAGSKQDKQ 127 >gi|197287013|ref|YP_002152885.1| DNA-binding transcriptional regulator CpxR [Proteus mirabilis HI4320] gi|227354741|ref|ZP_03839159.1| two component system response regulator [Proteus mirabilis ATCC 29906] gi|194684500|emb|CAR46276.1| two component system response regulator [Proteus mirabilis HI4320] gi|227165184|gb|EEI50012.1| two component system response regulator [Proteus mirabilis ATCC 29906] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF V AT +A + + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVLATDGEQALKLLDAS--IDLLLLDIMMPRKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIETLKELRQNF---QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRSNWSEQKQ 125 >gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551] gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551] gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 237 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G A + +A ++LP+ +++D + G Sbjct: 4 SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + I G GA+ ++ KPF+ + L ++ + + Sbjct: 63 MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 227 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ GF V A + A ++ + +++D + + Sbjct: 1 MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGA-DIVLLDLMLPEMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V + + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRQR---SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVL 116 Query: 119 QMQ 121 + Q Sbjct: 117 RRQ 119 >gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 227 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ GF V A + A ++ + +++D + + Sbjct: 1 MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGA-DIVLLDLMLPEMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V + + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRQR---SYVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVL 116 Query: 119 QMQKSKD 125 + Q ++ Sbjct: 117 RRQSTEA 123 >gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL S4-120] gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL S4-120] Length = 238 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA+ +A +++D M G + Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNY-EVILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 Query: 121 QKSKDEN 127 K E Sbjct: 122 AKQSSEE 128 >gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 232 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A+ CEA + + + + +++D M + Sbjct: 5 TILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQ-QVHLIILDIMMPNMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 EACIKIRE-HKNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRR 120 >gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family [Thioalkalivibrio sp. K90mix] Length = 229 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLV+ +R++ + + G+ V EA V A+ E P+ +++D + L Sbjct: 4 KILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLL-EDPPDLILLDWMLPDTSGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ P+ D+ + L + E + G G + ++ KPF+ L ++ + + Sbjct: 63 DWARTLKASPITKDIPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVLRR 122 >gi|17231256|ref|NP_487804.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132898|dbj|BAB75463.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 369 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L VD + + + + G+ + A+ A + E+ P+ +++D M G+ Sbjct: 11 RILAVDDTRDNLILVQTILESEGYEIDLASDGISALQKVEQSP-PDLILLDVMMPGMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + + + + ++ G GA+ F+ KPF+ + L +R L ++ Sbjct: 70 EVTRRIRNNPALSYIPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLRL 128 Query: 121 QKSKDENQFLD 131 + S DE + + Sbjct: 129 KHSLDEQKKMA 139 >gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 225 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ LL++D + K + + GF V A E + + +++D + + Sbjct: 1 MERLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNY-DLVILDIMLPKLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R +++ + L + I G GA+ +L KPFN L +R L Sbjct: 60 GFSVCREIR---TFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 229 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + ++ GF VF A E +E P+ +V+D + G+ Sbjct: 5 RLLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREK-PDLVVLDLMLPGMSGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++MP + V L + I G GA+ +++KPF+ L ++ + + Sbjct: 64 DVCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAVLKR 123 Query: 121 QKSKDENQ 128 E + Sbjct: 124 GAPFTEQE 131 >gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 242 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D + V G+ V ++ + + +L P+ +++D + V Sbjct: 1 MKPRILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQG-QALAVQLSPDLILLDLMLPQV 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R+ P D+ + L + G AGA+ +L KPF E + +R L Sbjct: 60 DGFTICQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRAL 119 Query: 118 PQM 120 + Sbjct: 120 LRR 122 >gi|212712531|ref|ZP_03320659.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM 30120] gi|212684747|gb|EEB44275.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM 30120] Length = 232 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF V A +A + + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDSS--IDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ+ V L + G GA+ +L KPFN L +R L Sbjct: 59 GIETLKELRQI---HQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALL 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRSNWSEQTQ 125 >gi|119490895|ref|ZP_01623178.1| Response regulator receiver (CheY) modulated Serine phosphatase [Lyngbya sp. PCC 8106] gi|119453713|gb|EAW34872.1| Response regulator receiver (CheY) modulated Serine phosphatase [Lyngbya sp. PCC 8106] Length = 379 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 7/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D ++R++ R G+ V A++ E E K L P ++ D M Sbjct: 1 MFKILVIDDDTVIRELLRRTLKKQGYDVSVASNGEEGIEKA-KVLRPALIICDWIMPRLT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E V+ P + + L + G AGA+ F+ KP L +R Sbjct: 60 GIEVCRQVKDNPELSTTQFFLLTSLGSISDRVKGLDAGADDFISKPLEMNELYARVRAGL 119 Query: 119 QMQK----SKDENQFLD 131 ++ + + + Q L+ Sbjct: 120 RLHQLSQDLQTQKQLLE 136 >gi|56752243|ref|YP_172944.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300669|ref|YP_400877.1| two component LuxR family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687202|dbj|BAD80424.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169550|gb|ABB57890.1| two component transcriptional regulator, LuxR family [Synechococcus elongatus PCC 7942] Length = 235 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LLVD +R+ + D GF V A + E E ++ P+ ++ D M + Sbjct: 10 ILLVDDEPGLREAVQAYLEDSGFRVRTAANAQEGWEQL-QQARPDLVITDVMMPRVDGYQ 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+A +R + V L I G AG + ++ KPF+ + L + L + + Sbjct: 69 FLAQLRGDDRFKALPVILLTARGMTGDRIQGYEAGCDDYIAKPFDPDELVVRVENLLRRR 128 Query: 122 K 122 + Sbjct: 129 R 129 >gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 230 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 1/129 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + H +R G+ V EA + EA ++ E++ + L++D M V Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQT-FDILLLDIMMPEVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + V + L E + G GA+ ++ KPF+ L ++ L + Sbjct: 60 GFAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRR 119 Query: 121 QKSKDENQF 129 ++ + Sbjct: 120 VETLRRRKQ 128 >gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED133] gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus JKD6159] gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O11] gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O46] Length = 234 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD H + + ++ G+ V A EA E E E P+ +++D + Sbjct: 3 QKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENE-QPDLIILDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ VR V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLD 131 + E + +D Sbjct: 120 RSQFVKEVEEID 131 >gi|261346810|ref|ZP_05974454.1| transcriptional regulatory protein CpxR [Providencia rustigianii DSM 4541] gi|282565210|gb|EFB70745.1| transcriptional regulatory protein CpxR [Providencia rustigianii DSM 4541] Length = 232 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF V A +A + + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDSS--IDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ+ V L + G GA+ +L KPFN L +R L Sbjct: 59 GIETLKELRQL---HQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALL 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRSNWSEQTQ 125 >gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] Length = 228 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ R V + GF V +A + EA E+E P+ +V+D + + Sbjct: 6 TVLVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEET-PDIIVLDWMLPAVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + + L + + G GA+ +++KP++ L +R + Sbjct: 65 EVCRRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRR 124 Query: 121 QKSKDENQFL 130 + Q L Sbjct: 125 VRPATVGQQL 134 >gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes serotype 4b str. F2365] gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b H7858] gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes Clip81459] gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL J1-194] gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL R2-503] gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes HPB2262] gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL J2-064] gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL J1-175] gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL N1-017] gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes serotype 4b str. F2365] gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b H7858] gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL R2-503] gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes HPB2262] gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL J1-194] gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL N1-017] gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes 1816] gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes 220] gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes str. Scott A] Length = 238 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA+ +A +++D M G + Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNY-EVILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 Query: 121 QKSKDEN 127 K E Sbjct: 122 AKQSSEE 128 >gi|153870406|ref|ZP_01999815.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073131|gb|EDN70188.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 358 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD KV GF V A S A P+ +++D M Sbjct: 8 TILVVDDIPTNIKVLFDYLKSIGFKVRIAKSGEHALAQIALSP-PDLILLDVMMPKIDGF 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ ++ V ++ + + + G GA ++ KPF +E + + + Sbjct: 67 EVCRRLKADVKTREIPVIFMTAKTETVDKVKGFEVGAVDYVTKPFQQEEVLARINAHLTI 126 Query: 121 QK----SKDENQFLDA 132 +K + NQ LDA Sbjct: 127 RKLQNSLQQHNQELDA 142 >gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] Length = 238 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD ++ K + G+ V EA E + +++D M + Sbjct: 12 MK-ILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGG-FDLIILDLMMPKID 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R ++V + L + I G GA+ ++ KPFN L+ +R L + Sbjct: 70 GLQACMRIRE-FSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRR 128 Query: 121 QKSKDENQ 128 + + Sbjct: 129 AGMAAQKE 136 >gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica CNB-440] gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family [Salinispora tropica CNB-440] Length = 227 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ GF V A + A ++ + +++D + + Sbjct: 1 MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGA-DIVLLDLMLPEMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V + + + G GA+ ++ KP++ L +R + Sbjct: 60 GSEVCRQLRQR---SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRK 119 >gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 233 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 9/125 (7%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + V + + V A EA + KE + +++D + Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLF-KETSFHLIILDLMLP 59 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + +R+ ++V + L +V+ E + G GA+ +L KPF+ L ++ Sbjct: 60 KLSGEEVCSKIRES---SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116 Query: 116 ELPQM 120 L + Sbjct: 117 ALIRR 121 >gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] Length = 228 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M + +V+ + + ++ + VF + + E + +K + P+ +++D + Sbjct: 1 MKAKIFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKK-IEPDLILLDWMLPDL 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +++ + + L + E + G GA+ +L+KPF+ L + L Sbjct: 60 SGIEICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINAL 119 Query: 118 PQMQKSKD 125 + K + Sbjct: 120 LRRVKPQA 127 >gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 243 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 2/128 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++LLV+ + + G+ A A E +E P+ +++D + Sbjct: 11 KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E H+R+ DV V + + + G GA+ +++KPF+ L +R L + Sbjct: 71 TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130 Query: 120 MQKSKDEN 127 + +N Sbjct: 131 RTERPADN 138 >gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 228 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 +L+VD + +V + G+ V A A+E PN +V+D + G+ Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPNLVVLDMMLPGIDRM 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ ++V V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 EVLKWIRKD---SNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122 Query: 121 QKSKDEN 127 ++ + Sbjct: 123 YSGEEPD 129 >gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] Length = 240 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R G+ V A E EK + +V+D + + Sbjct: 6 KKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKH-QFDLVVLDLMLPKIPG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + E I G GA+ +L+KPF+ L +R L + Sbjct: 65 ERVCRTIR---DTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFR 121 Query: 120 MQKSKDE 126 DE Sbjct: 122 RAHQADE 128 >gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 230 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ + EA EA + P+ +++D + G Sbjct: 4 KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALII-DKQPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ D+ + L +V+ + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 VELARRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+VD + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response transcriptional regulator PhoB [Acidovorax ebreus TPSY] gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax ebreus TPSY] Length = 235 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ GF A A+ + +LP+ +++D + Sbjct: 1 MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDA-VLPDVILLDWMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L+ R + + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GQSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKD 125 + + + + Sbjct: 120 AVLRRRAPEQ 129 >gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 233 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ L++D + + Sbjct: 1 MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAEN-PDILILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ + + Sbjct: 60 GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRR 118 Query: 121 QK 122 + Sbjct: 119 SE 120 >gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] Length = 229 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD ++ K R G V A EA E KE + +++D + Sbjct: 3 KRVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKA-KEKEYDMILLDIMLPKLTG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + V + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 LEVCQQIRE---FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDENQ 128 + ++ + Sbjct: 119 RMRKEEAKE 127 >gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 233 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ L++D + + Sbjct: 1 MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAEN-PDILILDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ + + Sbjct: 60 GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRR 118 Query: 121 QK 122 + Sbjct: 119 SE 120 >gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] Length = 231 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F A E P+ +++D + G+ Sbjct: 5 QKILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAV-TEFRPDLMILDLMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ ++ + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREVRRN---NNLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQKSKDENQFLDA 132 + + DA Sbjct: 121 RYQQPKADTAADA 133 >gi|323495068|ref|ZP_08100157.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546] gi|323310725|gb|EGA63900.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546] Length = 240 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V + + E++ P+ +++D + G F Sbjct: 4 KILVVDDDQEICELLEEYLTKQGYQVDAVNDGEQMKATLEQQGYPDLILLDVMLPGDDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ V + L D I G GA+ ++ KPFN L ++ + + Sbjct: 64 TLCQQVRRHSS---VPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAVLRR 120 Query: 121 QKSKDEN 127 +E Sbjct: 121 VNVSEEL 127 >gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + ++ N G+ E + A E E P+ +++D + Sbjct: 1 MLKILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFES-FYPDLVLLDVMLPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + L + + + G GA+ +++KPF+ + L ++ + Sbjct: 60 GYDVCKEIRKQ---HRTPIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 238 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + ++ +H GF + A + E P+ +++D + G+ Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMF-HERPPDLIILDLMIPGLDGLE 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A +RQ P D ++ L + + + G GA+ +++KPF+ L +R L + Sbjct: 62 VCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRS 121 Query: 122 -KSKDENQ 128 + +NQ Sbjct: 122 LRQGGQNQ 129 >gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 223 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD + ++ + G+ + S A ++ E + +++D M + Sbjct: 1 MYTILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKA-DLVLLDIMMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ +DV + + ++ G GA+ ++ KPF+ L + + Sbjct: 60 GWETCKRIRE---FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+++ + + ++ G++V A E E ++ PN +++D + Sbjct: 3 KTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAI-DIQPNLILLDLMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKQIRQQRM--NTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1] gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1] Length = 223 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + G+ VF A + EA + + E + +++D M + Sbjct: 2 NILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSES-IDLVLLDIMMPFMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A +++ +DV + L + + + + G + GA+ +++KPF+ + L + + K Sbjct: 61 EAA-QEIRTFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSK 119 >gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens TC1] gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens TC1] Length = 239 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A + EA + P+ V+D + + F Sbjct: 12 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHS-PDLAVLDVMLPDMDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L + D E + G G + ++ KPF+ + + +R + + + Sbjct: 71 TVTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130 Query: 123 SKDEN 127 +++ Sbjct: 131 PLEDD 135 >gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 238 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A A + E E +P+ +++D + + Sbjct: 3 KKILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVE-EDVPDLVILDLMLPKIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 62 LEVA-REIRKKHDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120 Query: 122 KSKDENQ 128 + Q Sbjct: 121 NTAAHAQ 127 >gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 236 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R + R GF V EA A E P+ +V+D M + Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEK-PDLVVLDLMMPEMG 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L +++ I G GA+ ++ KPFN L +R + + Sbjct: 60 GY-EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRR 118 Query: 121 QKS 123 + Sbjct: 119 TQQ 121 >gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 235 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ GF A A+ + +LP+ +++D + Sbjct: 1 MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDA-VLPDVILLDWMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L+ R + + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GQSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKD 125 + + + + Sbjct: 120 AVLRRRAPEQ 129 >gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus CGS00] Length = 233 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD H + + ++ G+ V A EA E E E P+ +++D + Sbjct: 3 QKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENE-QPDLIILDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ VR V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLD 131 + E + +D Sbjct: 120 RSQFVKEVEEID 131 >gi|300866673|ref|ZP_07111359.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335347|emb|CBN56519.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 425 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + V + V AT +A E+ P +++D M + F Sbjct: 9 ILIVDDNTTNLSVLSQALKAAQYKVRMATDGEDALAQVERHH-PELILLDIEMPNMDGFE 67 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + + ++ D EK + G GA ++ KPF + ++ +++ Sbjct: 68 TCRRLQANPTTQGIPIIFMTSLADTEKKVKGLSLGAVDYITKPFEASEVLARIKVHWRLK 127 Query: 122 KSKDENQF 129 + D + Sbjct: 128 QLTDSLER 135 >gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB [Candidatus Pelagibacter sp. HTCC7211] gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB [Candidatus Pelagibacter sp. HTCC7211] Length = 227 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + + + + + ++ G V + EA + K+ P+ +++D + + Sbjct: 5 VFIAEDETSIVTLLKYNLEKEGHKVSFCENGEEALKQI-KDKQPDLILMDWMLPDLSGVD 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++++ D+ + L + + E + GA+ ++ KPF+++ L ++ L + Sbjct: 64 ICKNLKKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLLRRS 123 Query: 122 KSKD 125 K + Sbjct: 124 KPQS 127 >gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 255 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD VR++ + G+ V A+ EA E+E P+ +V+D + Sbjct: 15 KILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQE-APDLIVLDVMLPKLDGY 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +DV + L D I G GA+ +L KPF+ + L + + + Sbjct: 74 GVCRELRKL---SDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRR 130 >gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ LL++D + K + + GF V A E + + +++D + + Sbjct: 1 MEKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNY-DLVILDIMLPKLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R +++ + L D I G GA+ +L KPFN L +R L Sbjct: 60 GFSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALL 116 Query: 119 QMQ-----KSKDENQF 129 + K KDE + Sbjct: 117 RRATNPYTKRKDEIRR 132 >gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 242 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 1/125 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + F V AT+ +A E + +++D + + Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHY-DIVLLDLMLPEMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R D V L + + G GA+ ++ KPF+ + + + + Sbjct: 60 GEEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119 Query: 121 QKSKD 125 + + Sbjct: 120 YEKSE 124 >gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112] gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112] gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 241 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A A E E E P+ +++D + + Sbjct: 9 KKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAEN-PDLIILDLMLPKIDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 68 LEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 126 Query: 122 KSKD 125 + Sbjct: 127 ATLK 130 >gi|209525497|ref|ZP_03274036.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209493996|gb|EDZ94312.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 598 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + + G+ V EA A E LP+ +++D M + Sbjct: 14 ILIVDDTPGNLHLLSRILRKKGYQVREAIDGKTALEEV-NNKLPDLILLDIMMPDIDGYT 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P +V + +L D + +G ++ KPF + + ++ ++ Sbjct: 73 VCNQLKSDPNTAEVPIIFLSALDDIFDKVKAFESGGVDYISKPFQFQEVLIRVKNQLTLR 132 Query: 122 KSKDENQFLD 131 +++ + Q L+ Sbjct: 133 RTQQQLQILN 142 >gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL J1-175] Length = 225 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|224371412|ref|YP_002605576.1| putative chemotaxis response regulator [Desulfobacterium autotrophicum HRM2] gi|223694129|gb|ACN17412.1| putative chemotaxis response regulator [Desulfobacterium autotrophicum HRM2] Length = 396 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+LLVD + +V H G + A + A +K P+ +++D M G+ F Sbjct: 24 SILLVDDQPVNLQVLMHTLERLGCKLLVAKNGETALTIAQKA-RPDLILLDIMMPGIDGF 82 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V +L D + G + GA ++ KPF E + + + Sbjct: 83 EVCRRLKADPSTQKIPVIFLSALDDTGDKVRGLQLGAVDYVAKPFQPEEVIARVNTHLTI 142 Query: 121 QKSKDENQF 129 + E Q Sbjct: 143 HRLSREVQQ 151 >gi|254476369|ref|ZP_05089755.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. R11] gi|214030612|gb|EEB71447.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. R11] Length = 423 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S + R++ +GF V EA S A E C + P+ ++ D M G+ Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICLADP-PDLILSDWMMPGMNG 77 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 LEF R+ + L + + ++ G AGA+ FL KP + + LR + Sbjct: 78 LEFCRAFREQSKDNYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 137 Query: 117 LPQMQKSKDENQFL 130 + +MQ+ E + Sbjct: 138 ILRMQRELSEKNRI 151 >gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1] gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1] Length = 239 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 55/124 (44%), Gaps = 5/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A E R+ +E +P+ +++D + Sbjct: 3 KKILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEE-VPDLMILDLMLPKIDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQIRQQKVM--IPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILR 119 Query: 120 MQKS 123 ++ Sbjct: 120 RSQA 123 >gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580] gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580] gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] Length = 240 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ + + + EA + EA + + +++D M G Sbjct: 7 TKILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDY-DLILLDLMMPGTDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR + L + + + G G + +++KPF+ + ++ L + Sbjct: 66 IEVCRQVR---DKKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|186681898|ref|YP_001865094.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464350|gb|ACC80151.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 374 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L VD + + + + G+ + + +A EK P+ +++D M G+ Sbjct: 11 RILAVDDTRDNLILVQAILESEGYEIDLVSDGIKALRQVEKSP-PDLILLDVMMPGMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + + + + ++ G AGA+ F+ KPF+ + L +R L ++ Sbjct: 70 EVTRRIRNNPAISYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLRL 128 Query: 121 QKSKDENQFL 130 + S DE Q + Sbjct: 129 KHSLDEQQKM 138 >gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1199 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD +V L G+ A + A C P+ +++D M E Sbjct: 13 ILIVDDQPDNLRVLSALLRKRGYECRRAINGQLALRACNSNP-PDLILLDIVMPVVDGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ V +L + + + + AG ++ KPF+ E + + MQ Sbjct: 72 VCKQLKSGEKTCDIPVIFLSAKGEVFEKVKAFAAGGADYISKPFHSEEVLARVEHQLTMQ 131 Query: 122 KSK----DENQFLDA 132 + + ++NQ L A Sbjct: 132 RLQKQLKEQNQILQA 146 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + I R + R+L GF + EA E E P+ +++D M + Sbjct: 970 RKVLVVDDNQINRDILRNLLEPLGFEIIEAADGKECLNKAV-EFKPDVILMDLVMPVMDG 1028 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108 F +R +P D+ + + + G+++FL+KP + Sbjct: 1029 FEATRRLRYLPELKDIVLLAISASAFDNTKLDFLLGGSDNFLIKPIEVK 1077 >gi|150003546|ref|YP_001298290.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931970|gb|ABR38668.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1378 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R R LF+ + + A + E KE +P+ ++ D M + F Sbjct: 1118 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKE-IPDLVITDVMMPVMNGF 1175 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L D E ++ G GA+ ++LKPFN E LR ++ L Sbjct: 1176 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI-- 1233 Query: 121 QKSKDENQFL 130 KS+ E + + Sbjct: 1234 -KSRTELKRI 1242 >gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1014 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLL D + +R R + + F V A E +P+ ++ D M Sbjct: 652 RLLLADDNADMRDYVRRVLSSS-FEVEAVPDGQAALEAARA-CVPDLILTDVMMPRLDGF 709 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ PL V V L E + G AGA+ +++KPF+ L + ++ Sbjct: 710 GLLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARVCSTLEL 769 Query: 121 QKSKDENQFLDA 132 + + E+ +A Sbjct: 770 SRMRRESSLQEA 781 >gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 229 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K R GF V A+ EA + +V+D + GV Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGD-FDLIVLDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR + + L + D I G GA+ ++ KPFN L +R + Sbjct: 60 GLTICREVRAAGM---TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVL 116 Query: 119 QMQKSKDENQF 129 + ++ Sbjct: 117 RRAEAASRQDR 127 >gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ + A+ EA + C E + +++D M Sbjct: 1 MPKILIVDDEPNIVTLISRYAQREGYDIVTASDGREAIDKCRSED-FDVIIMDVMMPDTD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +++ D+ V L + G G + ++ KPF+ L ++ + Sbjct: 60 GFTAC-KKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILSH 118 Query: 121 QKSKDE 126 ++ ++ Sbjct: 119 SRNAEQ 124 >gi|254432753|ref|ZP_05046456.1| two-component response regulator [Cyanobium sp. PCC 7001] gi|197627206|gb|EDY39765.1| two-component response regulator [Cyanobium sp. PCC 7001] Length = 240 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 + +VD +R++ + D G+ V + + + P+ +V+D + G Sbjct: 6 RIWVVDDDPELRQMLQRYLGDQGYEVRCLANGQQ-LTARLESQRPDLVVLDLMLPGDDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D+ V L + D I G GA+ +L KPF L + + + + Sbjct: 65 CLLRRLRDGGDDLPVLMLTGKGDAVDRIIGLEQGADDYLAKPFLPRELTARIEAVLRRRG 124 Query: 123 S 123 S Sbjct: 125 S 125 >gi|84387714|ref|ZP_00990730.1| Response regulator [Vibrio splendidus 12B01] gi|84377397|gb|EAP94264.1| Response regulator [Vibrio splendidus 12B01] Length = 242 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ GF V E + + P+ +++D + G Sbjct: 5 TRILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R ++V + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 65 FTLCQRVRKQ-SNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRV 123 Query: 122 K 122 + Sbjct: 124 Q 124 >gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 240 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ D G+ + A EK + L++D + GV Sbjct: 5 KKILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + G GA+ +L KPF+ L ++ L + Q Sbjct: 64 LEICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123 Query: 122 KSKDENQFLDA 132 ++ N +DA Sbjct: 124 EAMSRNLKMDA 134 >gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 230 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ V A EA + K++ P +++D + + Sbjct: 3 KKVLIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKA-KDIKPGLILLDLMLPIMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ D + L + + I G GA+ ++ KPF+ + L ++ + + Sbjct: 62 TKVCSKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVTR 121 Query: 120 MQKSKDE 126 + + Sbjct: 122 RYAAPSQ 128 >gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 241 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + G+ V A EA E P+ +++D + + F Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEK-PDLVILDVMLPDMDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + +L + D + G +AG + ++ KPF E + + + + K Sbjct: 70 TVTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129 Query: 123 SKDENQFL 130 Q L Sbjct: 130 RSAVEQPL 137 >gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD +R++ + L + GF V EA EA E + + +++D M + Sbjct: 1 MNKILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLET-IKVDMVILDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ + L + + + + G + G + +L+KPF L ++ L Sbjct: 60 GWQLCRELREH---YDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALL 116 Query: 119 QMQK 122 + + Sbjct: 117 KRYQ 120 >gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] Length = 251 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ F EA E P+ +++D + G Sbjct: 5 QRILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVP-EYRPDLIILDLMLPGIDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R V V L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YEVCRRLRMRSS---VPVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 234 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVL 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRNQM 121 >gi|75907784|ref|YP_322080.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701509|gb|ABA21185.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 369 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L VD + + + + G+ + A+ A + E+ P+ +++D M G+ Sbjct: 11 RILAVDDTKDNLILVQTILESEGYEIDLASDGISALQKVEQSP-PDLILLDVMMPGMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + V + + ++ G GA+ F+ KPF+ + L +R L ++ Sbjct: 70 EVTRRIRNNPALSYVPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLRL 128 Query: 121 QKSKDENQFLD 131 + S DE + + Sbjct: 129 KHSLDEQKKMA 139 >gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 234 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD H + + ++ G+ V A EA E E E P+ +++D + Sbjct: 3 QKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESE-QPDLIILDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ VR V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLD 131 + E + +D Sbjct: 120 RSQFVKEVEEVD 131 >gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 247 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +RK+ + + G+ V + A + E +++++D + + Sbjct: 1 MKKVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLA-SEKNFDFIILDLMLPSMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + + + L + D + I G GA+ ++ KPF+ + M+ + Sbjct: 60 GMDVCKQLRQDKV--NTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAIL 117 Query: 119 QMQK 122 + + Sbjct: 118 RRSR 121 >gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + R D G+ V A E E E + LV+D + G+ Sbjct: 15 RRVLIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLE-EGDWDALVLDLMLPGIDG 73 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L +R L + Sbjct: 74 LEICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRS 133 Query: 122 KSKDENQFLDA 132 + + N +DA Sbjct: 134 SAIERNARIDA 144 >gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 238 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R++ + + V EA + +A E+ + +++D M G+ Sbjct: 6 KILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLAL-EIDYDLILLDIMMPGMDGI 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V L + + + G G + +++KPF+ + ++ L + Sbjct: 65 EVCQELRK---TKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|159897248|ref|YP_001543495.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890287|gb|ABX03367.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 531 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 7/133 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD V + + G+ A S EA E++ +P+ +++D M + Sbjct: 8 ILIVDDQTTNVMVLQRMLERAGYATACARSGFEALTMLEQQ-VPDLILLDVMMPEMDGYQ 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 + +R+ + + ++ + + G GA+ ++ KP NR+ L MR L + Sbjct: 67 TLQAIRERNHLPFIPIIFVSAKQTTADTVTGLDLGADDYVTKPVNRDELLARMRVLLRLK 126 Query: 120 --MQKSKDENQFL 130 + E + L Sbjct: 127 HTRRALHREQERL 139 >gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] Length = 248 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 L+V+ + ++ ++ G+ V A A +E P+ +++D + +E Sbjct: 24 LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMAL-LMVEERQPDIVLLDWMLPKLSGIEV 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++ + L + I G GA+ +++KPF+ L+ +R + + + Sbjct: 83 CRRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRRIR 142 >gi|238921655|ref|YP_002935170.1| DNA-binding transcriptional regulator CpxR [Edwardsiella ictaluri 93-146] gi|238871224|gb|ACR70935.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Edwardsiella ictaluri 93-146] Length = 232 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L + GF V A +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAILDAS--IDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQFLDA 132 + ++ Q D+ Sbjct: 116 RRSNWNEQQQNSDS 129 >gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family [Desulfomicrobium baculatum DSM 4028] Length = 231 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++++ + + G+ F A + + + E P+ +++D + G+ Sbjct: 4 KIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSE-RPDLVLLDLMLPGMSGT 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ P + + L D I G GA+ +++KPF+ L ++ + + Sbjct: 63 DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122 >gi|329961484|ref|ZP_08299565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531696|gb|EGF58525.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1361 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R+ + EA + EA KE + ++ D M + Sbjct: 1109 SILIVEDNADIRQYLSRELGKS-YRTLEAENGEEALNIL-KEQEIDLILTDVMMPVMDGL 1166 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q + V L + D ++ I G + GA+ ++ KPF+ + +R L + Sbjct: 1167 KLCKHIKQNLYTCHIPVIMLSAKTDLKEQIEGLQMGADDYIPKPFSMALVTTKIRNLFRT 1226 Query: 121 QKSKDE 126 + E Sbjct: 1227 RHRAIE 1232 >gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] Length = 225 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ F V EA EA + +E + L++D M + + Sbjct: 5 KVLVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDLFFEEKDISLLILDVMMPKMDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + V V L + + G GA+ ++ KPF+ + L + L + Sbjct: 65 -AVLKSIREHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRRSG 123 Query: 123 SKDEN 127 + E Sbjct: 124 IQQEE 128 >gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] Length = 232 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+VD + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 232 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD VR+ G+ V A EA P+ +++D M + Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHL-SGTHPDAVIMDVMMPRLDGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A G DV + L + + G AGA+ +++KPF + L +R L + + Sbjct: 64 ATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123 Query: 124 KDEN 127 + E Sbjct: 124 EPEQ 127 >gi|229512884|ref|ZP_04402351.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae TMA 21] gi|229350133|gb|EEO15086.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae TMA 21] Length = 1129 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 724 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 782 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 783 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 840 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 841 ASKAELRRIE 850 >gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] Length = 248 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 17 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 75 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 76 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 132 Query: 117 LPQM 120 + Sbjct: 133 QLRR 136 >gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 234 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + ++ R F A S +A E +L P+ +++D + G+ Sbjct: 2 NILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIF-GQLQPDLIILDLMLPGLDGL 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ P D ++ L + I G GA+ +L+KPF+ L +R L + Sbjct: 61 EVCTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120 >gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria pomeroyi DSS-3] gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria pomeroyi DSS-3] Length = 229 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+V+ R+V + GF V A + EA E P+ +V+D M + Sbjct: 7 SVLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAM-LLVDEDTPDIIVLDWMMPNLSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + V L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 VRPSTVGLRLE 136 >gi|332711421|ref|ZP_08431353.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332349970|gb|EGJ29578.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 516 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++VD S V L ++ GF V A A + P+ +++D M G+ F Sbjct: 33 IVIVDDSPTNLGVMFELLSNSGFKVLVAQDGYSALQKVNY-TQPDLILLDIMMPGIDGFE 91 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ V +L D + G + GA +L KP +E +R + ++ Sbjct: 92 TCRRLKAQESTRDIPVIFLTARTDTLDKVKGFKLGAVDYLTKPVQQEEVRARVNTHLKLG 151 Query: 122 KSKDENQ 128 + + + Q Sbjct: 152 RLQKQLQ 158 >gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 235 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A + EA E + P+ V+D + + F Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADE-PDLAVLDVMLPDMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V +L D + G G + ++ KPF+ + + +R + + Sbjct: 68 TITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127 Query: 123 S-KDEN 127 S +DEN Sbjct: 128 SGEDEN 133 >gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9605] gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9605] Length = 245 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A E +++LP+ ++ D M Sbjct: 20 RLLLVDDEPGLRAAVQAYLEDEGFEVTTAVDGEEGFAKA-QQMLPDVVISDVMMPRLDGY 78 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V +L + G AG + ++ KPF+ + L +R + Q Sbjct: 79 GLLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 138 Query: 121 -QKSKDENQFLD 131 Q+ E Sbjct: 139 QQRLLQEAARFA 150 >gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 7/132 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + ++ GF V A S EA + EK + +V+D M Sbjct: 5 RILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEK-RKFDLVVLDIMMPEVSGF 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R+ + V +L + + G G + ++ KPF+ L +R + + Sbjct: 64 DVLRRIREK---IQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRR 120 Query: 121 QK-SKDENQFLD 131 K S+ N L+ Sbjct: 121 AKPSEAANTILE 132 >gi|294777639|ref|ZP_06743090.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294448707|gb|EFG17256.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1374 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R R LF+ + + A + E KE +P+ ++ D M + F Sbjct: 1114 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKE-IPDLVITDVMMPVMNGF 1171 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L D E ++ G GA+ ++LKPFN E LR ++ L Sbjct: 1172 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI-- 1229 Query: 121 QKSKDENQFL 130 KS+ E + + Sbjct: 1230 -KSRTELKRI 1238 >gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA + E E + +++D M + Sbjct: 4 KILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLE-EKEFDLILLDVMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + L + + I G +GA+ +L KPFN L ++ + K Sbjct: 63 EACLKIREE-QTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRHK 121 >gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B] gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B] Length = 239 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++++D + ++ G+ V +A E K+ + ++D + G+ Sbjct: 4 RRIMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEI-KDKEIDMFLVDIMLPGMDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++R V +L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 FEFVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFR 122 Query: 120 MQKSKDE 126 + + Sbjct: 123 RMQLSTQ 129 >gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + + R+ G+ V A + + ++ P+ +V+D + + Sbjct: 1 MATVLIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRD-QPDLVVLDIMLPRLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ +DV + L D IAG GA+ ++ KPF+ +R + Sbjct: 60 GFSVCRILRQE---SDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAIL 116 Query: 119 QMQKSK 124 + + + Sbjct: 117 RRSERQ 122 >gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD V V G+ V A E P+ +V+D + G+ Sbjct: 3 QRVLVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEP-PDLVVLDLMLPGLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R P G V + L D + G + GA+ +L KPF+ L + + + Sbjct: 62 LEVCRRLRTKPGG--VPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] Length = 747 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + G+ V A EA E P+ +++D M + F Sbjct: 12 TILVVDDNPVNLGLVADHLELRGYQVVVALGGNEALERVAFA-RPDLVLLDVMMPDIDGF 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V ++ D + +AG AG ++ KPF E L ++ + Sbjct: 71 ETCRRLKAQADYKDIPVIFMTALTDVDSKVAGFAAGGVDYVSKPFQIEELLARVQTHLAL 130 Query: 121 QKSKDENQFLDA 132 +++ + + L A Sbjct: 131 RRT--QLELLAA 140 >gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL F6-596] gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL F6-596] Length = 238 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA+ +A + +++D M G + Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNY-EVILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCRELRE---FKATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 Query: 121 QKSKDEN 127 K E Sbjct: 122 AKQNSEE 128 >gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 227 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ R GF V EA +A E C KE + +++D M + Sbjct: 1 MSRILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKED-FDLIIMDVMMPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + L + I G G++ +++KPF+ + L + + Sbjct: 60 GFSACREIRK---FKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVI 116 Query: 119 QMQKSKDENQ 128 + + + Sbjct: 117 KRSQGAQNEE 126 >gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 8/125 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + R + + VF A+S EA E + L P+ +++D M G Sbjct: 1 MREKILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIK--LYPDLILLDIMMPGK 58 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +R + + +L + + ++ G +G + ++ KPF+ L+ + Sbjct: 59 NGYEVCNDIRDI---VSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAH 115 Query: 118 PQMQK 122 + +K Sbjct: 116 LRREK 120 >gi|229505755|ref|ZP_04395265.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae BX 330286] gi|229509211|ref|ZP_04398696.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae B33] gi|229519579|ref|ZP_04409022.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae RC9] gi|229520913|ref|ZP_04410335.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae TM 11079-80] gi|229608866|ref|YP_002879514.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae MJ-1236] gi|255744160|ref|ZP_05418113.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholera CIRS 101] gi|262155734|ref|ZP_06028858.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae INDRE 91/1] gi|262169924|ref|ZP_06037614.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae RC27] gi|229342146|gb|EEO07142.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae TM 11079-80] gi|229344268|gb|EEO09243.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae RC9] gi|229353783|gb|EEO18719.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae B33] gi|229357978|gb|EEO22895.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae BX 330286] gi|229371521|gb|ACQ61944.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae MJ-1236] gi|255738100|gb|EET93492.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholera CIRS 101] gi|262021658|gb|EEY40369.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae RC27] gi|262030445|gb|EEY49085.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae INDRE 91/1] Length = 1129 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 724 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 782 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 783 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 840 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 841 ASKAELRRIE 850 >gi|229530428|ref|ZP_04419816.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae 12129(1)] gi|229332201|gb|EEN97689.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae 12129(1)] gi|327483425|gb|AEA77832.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae LMA3894-4] Length = 1129 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 724 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 782 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 783 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 840 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 841 ASKAELRRIE 850 >gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M S+LLVD + + GF AT+ +A + +P+ +++D + Sbjct: 1 MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRR-RVPDLVLLDVMLPDVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P V V L + D + G GA+ ++ KPF+ L ++ + Sbjct: 60 GTEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVL 119 Query: 119 QMQKSKDENQFLDAI 133 + ++ ++ +++ Sbjct: 120 RRSAARPSDRPPESV 134 >gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 238 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 4/128 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + ++ +H GF + A +++ P+ +++D + G+ Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQEQP-PDLIILDLMIPGLDGLE 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A +RQ P D ++ L + + + G GA+ +++KPF+ L +R L + Sbjct: 62 VCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRS 121 Query: 122 -KSKDENQ 128 + +NQ Sbjct: 122 LRQGGQNQ 129 >gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E + + +++D + + Sbjct: 3 RKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKY-DIILLDLMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 LEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDENQ 128 +S+ E + Sbjct: 119 RARSEHEEK 127 >gi|146282783|ref|YP_001172936.1| two-component response regulator GltR [Pseudomonas stutzeri A1501] gi|145570988|gb|ABP80094.1| two-component response regulator GltR [Pseudomonas stutzeri A1501] gi|327481121|gb|AEA84431.1| two-component response regulator GltR [Pseudomonas stutzeri DSM 4166] Length = 244 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD +R++ + + GF V + R E + +++D + Sbjct: 6 KNILLVDDDQEIRELLQTYLSRSGFQVRGVPDGAQFRSALCAEPA-DLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ + + L D + G GA+ +L KPF+ L ++ L + Sbjct: 65 FSLCRWIRQHERLASMPIIMLTASSDEADRVVGLELGADDYLGKPFSPRELLARIKALLR 124 Query: 120 MQKSKDE 126 E Sbjct: 125 RVSFAQE 131 >gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio splendidus LGP32] gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 1129 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V A E E EKE P L++D M G+ Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEK-PELLLLDIMMPGMSGYQVC 785 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R+ + + L E + G AGAN +L KPFN++ L + S Sbjct: 786 EALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL--SAS 843 Query: 124 KDENQFLD 131 K E + L+ Sbjct: 844 KAEQRRLE 851 >gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 240 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R R + V EA++ EA + +E LP+ +V+D M + F Sbjct: 12 TILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRL-REHLPDLVVLDVMMPEMDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V V L + + I G GA+ ++ KPF+ L +R L + Sbjct: 71 -ETLKAIREVSTVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRR 127 >gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 239 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 8 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 66 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 67 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 123 Query: 117 LPQM 120 + Sbjct: 124 QLRR 127 >gi|148976462|ref|ZP_01813168.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3] gi|145964285|gb|EDK29541.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3] Length = 242 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ GF V E + + P+ +++D + G Sbjct: 5 TRILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R ++V + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 65 FTLCQRVR-RNSNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRV 123 Query: 122 KSKD 125 + D Sbjct: 124 QVVD 127 >gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] Length = 228 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E+ + + +++D + + Sbjct: 3 KRILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKA-CEYDLVLLDVMLPKLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D+ V L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDE 126 + E Sbjct: 119 RTSKRKE 125 >gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + GF V A A + E P+ +++D + + Sbjct: 3 NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTE-RPDLIILDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDEN 127 K ++E Sbjct: 120 RTKLQEEQ 127 >gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 239 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + GF VF A++ EA E P+ +V+D + + F Sbjct: 12 RLLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREA-TENQPDLVVLDVMLPDMDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + +L + + + +AG G + ++ KPF+ E + +R + + Sbjct: 71 TVTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 130 Query: 123 SKDE 126 E Sbjct: 131 GGAE 134 >gi|222054285|ref|YP_002536647.1| response regulator receiver modulated serine phosphatase [Geobacter sp. FRC-32] gi|221563574|gb|ACM19546.1| response regulator receiver modulated serine phosphatase [Geobacter sp. FRC-32] Length = 383 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD + ++ + + + A + A + LP+ +++D +M + Sbjct: 5 RILLVDDTPENLELLAEILGES-YATISAGNGEAALVAASTQPLPDLILLDINMPDMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ PL ++ V +L + + +AG ++ KPF + ++ + ++ Sbjct: 64 EVCRRLKEDPLLREIPVIFLSGLDATQDKVKAFKAGGVDYITKPFQFDEMQARVTTHVRL 123 Query: 121 QKSKDENQF 129 ++ + E + Sbjct: 124 RQFQSELEQ 132 >gi|94268821|ref|ZP_01291291.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451451|gb|EAT02291.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 461 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 1/132 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + L + G+ VF A S +A E K+ + ++ D M G+ Sbjct: 1 MQTILVVDDEPNYLVILEELLREEGYEVFCAESGQQALEII-KQSDLDLVITDMRMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 D+ V + + EK +A R GA ++L KPF+ + L ++R+ Sbjct: 60 GLELLKSSKERNPDLPVIMITAFGEVEKAVAAMRTGAFNYLTKPFDNDELLVSVRQAVDH 119 Query: 121 QKSKDENQFLDA 132 + EN L A Sbjct: 120 YRVIKENTRLRA 131 >gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 231 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ R + G+ V + EA + K P+ +V+D + G+ Sbjct: 4 KHVLVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKII-KSKQPDLMVLDLMLPGIDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ P +++ + L + + ++ G GA+ ++ KPF+ L ++ + + Sbjct: 63 FEVARFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAILR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EA EA + + ++D + G+ Sbjct: 1 MSKVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGID 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + + +L +V + + GA+ + KPF+ L ++ L + Sbjct: 61 GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRR 120 Query: 121 QKSKDE 126 E Sbjct: 121 VNVYRE 126 >gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + ++ + GF V A EA +E P+ +V+D + +E Sbjct: 5 VLVVEDEDALSELLSYNLKKEGFRVSLAADGEEAM-MLVEERQPDVVVLDWMLPKISGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R ++ + L + I G GA+ +++KPF + L +R + + Sbjct: 64 VCRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLRRI 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2] gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2] Length = 235 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD + + + GF V A EA + E+ P+ +++D + Sbjct: 3 KTILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIA-SEIQPDLMLLDIMLPNRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREIRKKYDF---PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 Q + Sbjct: 119 RQNIAPAEE 127 >gi|299144918|ref|ZP_07037986.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298515409|gb|EFI39290.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1346 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + R R+ + V A + EA E ++E LP+ ++ D M + Sbjct: 1099 LLIVDDNEDFRIFMRYSLELQ-YRVKLAVNGKEAWEMMQEE-LPDLVISDVMMPQMDGNE 1156 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + V L + E + G + GA+ ++ KPFN L +R+L ++ Sbjct: 1157 LCRLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIELS 1216 Query: 122 KSKD 125 + Sbjct: 1217 RYHR 1220 >gi|257059714|ref|YP_003137602.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 8802] gi|256589880|gb|ACV00767.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 8802] Length = 379 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + + + G+ V + + +EL P+ ++ D M G Sbjct: 1 MAQILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKA-QELCPDLIICDWVMPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + V+ P F L E + G AGA+ FL KP L +R Sbjct: 60 GLEVCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSGL 119 Query: 119 QMQKSKDENQ 128 ++ + + + Sbjct: 120 RLHELSQDLK 129 >gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L+++ + ++ G+ A E P+ +++D + G+L Sbjct: 1 METILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANA-GHCHPDLIILDLMLPGML 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++++ + V L + + + G GA+ +++KPF+ L ++ + Sbjct: 60 GTEVCKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVL 119 Query: 119 QMQKSK 124 + ++ Sbjct: 120 RRSNTE 125 >gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi] Length = 242 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A + E + P+ L++D M G+ F Sbjct: 18 RVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARA-FRPDALILDVMMPGMDGF 76 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D V +L E + G GA+ ++ KPF+ E + +R + + Sbjct: 77 GMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAG 136 Query: 123 SKDENQ 128 D+ Q Sbjct: 137 HSDDKQ 142 >gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 227 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 + +VD + ++ GF V + A + +E P +++D + G+ Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKI-QEKPPKLVILDIMLPGIDGI 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ + V + L + D + GA+ +++KPF+ + L ++ + + Sbjct: 65 ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121 Query: 121 QKSKDENQF 129 + + + + Sbjct: 122 YEPESDEKQ 130 >gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] Length = 235 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ R G+ V EA EA + +E +++D M + Sbjct: 14 KILVVDDESRMRKLVRDFLEREGYAVLEAGDGMEAMDIFYEEKDIALIILDVMMPHMDGW 73 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L + + G G + ++ KPF+ + L + + + Sbjct: 74 QTCREIRKESK---VPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRR 130 Query: 121 QKSKDENQFLDA 132 + + L A Sbjct: 131 TNALASDDLLHA 142 >gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1065 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +++VD I R+V ++ G V EA + +A E +V+D M G+ Sbjct: 694 RVIVVDDEPINRQVLKNHLTLIGCEVREAANGVDAIRLVRDEGPFELMVLDIMMPGMSGY 753 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + +L + +IA AG N +L KPF++ L + L + Sbjct: 754 DVCTVLRESYSLYQLPILFLTAKNQIADIIAALEAGGNDYLAKPFDKRELISRAKNLITL 813 Query: 121 QKSKDENQFLDAI 133 +K+ +E AI Sbjct: 814 KKAVEEQNKFIAI 826 >gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] Length = 230 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + V G+ A+ A ++ LP+ +V+D + + Sbjct: 4 RILIVDDDPDILDVTGFAVEKAGYETLFASDGLNAL-KASRQQLPDLIVLDIGLPEMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L D I G GA+ +L KPF+ L ++ + + Sbjct: 63 EVCREIRKS---SDVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAILKR 119 >gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] Length = 248 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ + G+ V A+ EA E C + P+ +V+D M Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVITASDGNEALE-CFRVNEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + Sbjct: 126 VDKEQ 130 >gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2] gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 5/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A E ++ E P+ +V+D + Sbjct: 3 KKILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEK-PDLIVLDLMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRQQKI--ATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQK 122 + Sbjct: 120 RTQ 122 >gi|224537099|ref|ZP_03677638.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus DSM 14838] gi|224521276|gb|EEF90381.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus DSM 14838] Length = 752 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ + + +R ++ + + V EA++ EA +L P+ +V D M Sbjct: 503 TILVAEDNDDMRLFLKNSLST-DYHVVEASNGEEAMNMAL-QLNPDIIVCDIMMPVLNGD 560 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + + L D E +I G GA+ ++ KPF+ L+ +R L Sbjct: 561 AVCSRIKTSVETSHIPFILLTALADKEDIIKGLDCGADDYITKPFDISILKARIRNLLAN 620 Query: 121 QKSKDE 126 +K E Sbjct: 621 RKKIRE 626 >gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 227 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 + +VD + ++ GF V + A + +E P +++D + G+ Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKI-QEKPPKLVILDIMLPGIDGI 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ + V + L + D + GA+ +++KPF+ + L ++ + + Sbjct: 65 ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121 Query: 121 QKSKDENQF 129 + + + + Sbjct: 122 YEPESDEKQ 130 >gi|218437504|ref|YP_002375833.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218170232|gb|ACK68965.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 373 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD S + + + + G V A A + KE P +++D M + F Sbjct: 14 KILVVDDSPDNLFLIQTILEEQGLNVILAQDGIAALKLV-KEKSPKLILLDVMMPKMDGF 72 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + + + + G GA+ F+ KP + + L +R L ++ Sbjct: 73 EVTRQIRSNPNIPYIPILLITAYDQPS-AVKGLDVGADDFIRKPVDVDELLARVRSLLRL 131 Query: 121 QKSKDENQFL 130 ++S DE + + Sbjct: 132 KQSVDEREQM 141 >gi|115377600|ref|ZP_01464797.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|310820429|ref|YP_003952787.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365401|gb|EAU64439.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|309393501|gb|ADO70960.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1020 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL D + +R+ L + + V A + P+ ++ D M Sbjct: 634 RILLADDNADMREYVARLLSPR-WTVEAVADGAAALDVALARP-PDLVLTDVMMPRLDGF 691 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGA+ +L+KPF+ L + ++ Sbjct: 692 GLLRALRSQASTRAIPVIMLSARAGEEARVEGMEAGADDYLVKPFSARELLARVSARLEI 751 Query: 121 QKSKDEN 127 + + N Sbjct: 752 SRMRMAN 758 >gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 233 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E E P+ L++D + V Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAE-QPDILILDLMLPEVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L ++ L + Sbjct: 60 GLDVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRR 118 Query: 121 QKS 123 + Sbjct: 119 SEL 121 >gi|238754750|ref|ZP_04616102.1| Transcriptional regulator in 2-component system [Yersinia ruckeri ATCC 29473] gi|238707058|gb|EEP99423.1| Transcriptional regulator in 2-component system [Yersinia ruckeri ATCC 29473] Length = 232 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF + A +A + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNIVVAYDGEQALNLL--DNSIDLLLLDIMMPRKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQFLD 131 + ++ Q +D Sbjct: 116 RRSNWNEQQQNVD 128 >gi|297580749|ref|ZP_06942675.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297535165|gb|EFH74000.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 1177 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 831 VCVKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 889 ASKAELRRIE 898 >gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] Length = 234 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 5/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ EA + ++ P+ +++D + + Sbjct: 3 KRILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQD-PDLVLLDLMLPKMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R G + V L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 FDVCRSIRA--EGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIR 119 Query: 120 MQKS 123 ++ Sbjct: 120 RREM 123 >gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 234 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D V ++ + V EA + EA E P+ +++D M Sbjct: 5 KVLVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSK-PDIILLDIMMPDIDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +V + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 64 EVCKEIRKKA---NVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRR 120 >gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL F2-515] Length = 220 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + N GF V+ A EA E E E+ P+ +++D + G Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119 Query: 120 MQ 121 Sbjct: 120 RH 121 >gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ D +R++ + G+ V A+ EA + K+ P+ +V+D M Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLF-KDYEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + Sbjct: 126 IDKEQ 130 >gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 225 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + R + G+ V A + E + +V+D + + Sbjct: 1 MTRILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNY-DLVVLDLMLPVID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R ++V + L +AG AGA+ +L+KPF E L +R + Sbjct: 60 GFEVARRIRAA-SNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRR 118 Query: 121 QKSKDENQFL 130 Q++ + L Sbjct: 119 QQTYQHQEVL 128 >gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 226 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + E + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDEN--QFLDA 132 + + +E Q L+A Sbjct: 117 RRRGEPEEAVPQALEA 132 >gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 230 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + R G+ V A EA E L P+ +++D + V F Sbjct: 5 ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRA-LQPDLILLDVMLPEVDGF- 62 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ-- 121 +R + + V V L + D + G GA+ ++ KPF+ L ++ + Sbjct: 63 DVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122 Query: 122 --KSKDENQF 129 + EN+ Sbjct: 123 VLREHKENER 132 >gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] Length = 233 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F EA + PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDS-YQPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R ++ + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRAK---SNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLR 120 Query: 120 MQKSKDEN 127 + + Sbjct: 121 RYQPAKQE 128 >gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus Kuenenia stuttgartiensis] Length = 230 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + G+ A A E K P +++D + G+ Sbjct: 4 TILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALE-LSKSERPALIILDIMLPGMNGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +D + L + + + G + GA+ ++ KPF+ + L + + + Sbjct: 63 EVCKRLKSDEALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVLRR 122 Query: 121 QKSKD-ENQFLD 131 K+ + + L+ Sbjct: 123 TKNASFKKELLE 134 >gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 256 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 7/132 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+ D +R++ R G +V EA + + E ++ + L++D M Sbjct: 34 RVLVADDEAGLRQLVRLYLEKEGMIVGEAATGRQTLERLHQDKY-DLLILDLMMPDGDGW 92 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ D+ + L + + G GA+ ++ KPF+ L ++ L + Sbjct: 93 TVCREVRREM---DLPIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRR 149 Query: 121 QKS-KDENQFLD 131 ++ + + L Sbjct: 150 ARNERARGERLQ 161 >gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Leuconostoc gasicomitatum LMG 18811] gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 49/125 (39%), Gaps = 1/125 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ G+ V AT A E ++ + +++D + + Sbjct: 1 MTKILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQT-FDAILLDLMLPVMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V + + D + G GA+ ++ KPF+ + ++ + + Sbjct: 60 GMTVLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRR 119 Query: 121 QKSKD 125 +++ Sbjct: 120 SQTER 124 >gi|229592349|ref|YP_002874468.1| putative two-component response regulator [Pseudomonas fluorescens SBW25] gi|229364215|emb|CAY51897.1| putative two-component response regulator [Pseudomonas fluorescens SBW25] Length = 244 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + + GF V E + +++D + Sbjct: 6 KSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGA-GFRQAMNEAPCDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ ++ KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124 Query: 120 M 120 Sbjct: 125 R 125 >gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] Length = 239 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 9/125 (7%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + V + G+ V A EA + KE+ + +++D + Sbjct: 7 MKKLFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 65 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + +R+ ++V + L +V+ E + G GA+ +L KPF+ L ++ Sbjct: 66 KLSGEEVCSKIRES---SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 122 Query: 116 ELPQM 120 L + Sbjct: 123 ALIRR 127 >gi|86750927|ref|YP_487423.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573955|gb|ABD08512.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1426 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R L + + V A E K P+ ++ D M + Sbjct: 648 RILLADDNPDMRDYVTRLLGES-YEVETVGDGVAALEAAWKH-RPDLVISDIMMPRLDGL 705 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R DV V +L E + G AGA+ +L KPF+ L +R + Sbjct: 706 SLLKALRSDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNLDI 765 Query: 121 QKSKDENQFLD 131 + + E + Sbjct: 766 AEVRREALRTE 776 Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 13/121 (10%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL--LPNYLVIDESMEGVLE 61 +L+V+ + V + L +D G+ ATS +A + +++ + ++ D M G+ Sbjct: 1305 VLVVEDNAEVGEFSTQLLHDLGYETVLATSAEQALQLLDQDDAARFHLVLSDVVMPGMDG 1364 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDF--EKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ + V + G L KP++ E L +R Sbjct: 1365 VALGREIRRR--LPHLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRA 1417 Query: 118 P 118 Sbjct: 1418 L 1418 >gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911] gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911] Length = 237 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A ++F +E P+ +V+D + Sbjct: 3 KKVLVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQE-RPDLIVLDLMLPKLNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKQLRQEKI--HTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQ 128 + Q Sbjct: 120 RTQLTAGQQ 128 >gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V A+S EA + + P+ L++D M G+ F Sbjct: 12 RVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRT-VKPDLLILDVMMPGMDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R DV V L + E + G + G++ ++ KPF+ L + + + Sbjct: 71 TLLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRR 128 >gi|198274925|ref|ZP_03207457.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135] gi|198272372|gb|EDY96641.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135] Length = 1373 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+++ + +R+ R L + V EA + E + E +P+ ++ D M + Sbjct: 1119 QTVLIIEDNTDMRRYLRDLMKKH-YRVLEAENGEEGVKVAV-EQVPDLVLSDVMMPVMDG 1176 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F A +R+ + + L + + + + + GA+ ++ KPFN E L + L Sbjct: 1177 FTCCAELRKRKETAHIPILLLTAKAEDKDSVEASYRGADDYVRKPFNPEVLLAKVAHLLD 1236 Query: 120 MQKSKDE 126 M++ + Sbjct: 1237 MRRRLKQ 1243 >gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ R +++ EA + EA E + +++D M G Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAK-GLEANYDLILLDLMMPGTDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + L + + + G AG + +++KPF+ + ++ L + Sbjct: 66 IEVCRQVREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|294638284|ref|ZP_06716537.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC 23685] gi|291088537|gb|EFE21098.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC 23685] Length = 232 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L + GF V A +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDAS--IDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRSSWNEQQQ 125 >gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 223 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 52/129 (40%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + + G+ V A + E + + +++D + + Sbjct: 1 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENKDIKIILLDIMLPDIS 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + V V + + + G GA+ +++KPF+ + ++ + Sbjct: 61 GWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAIL 117 Query: 119 QMQKSKDEN 127 E+ Sbjct: 118 SRTYGSQED 126 >gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] Length = 234 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R+ + G+ V A + E E K + +++D + G+ Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVL 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRNQM 121 >gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1] gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1] Length = 238 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ R +++ EA A E + +++D M G+ Sbjct: 6 KVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEY-DCILLDLMMPGMDGI 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ V L + + + G G + +++KPF+ + ++ L + Sbjct: 65 EVCKELRQK---KSTPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida subsp. salmonicida A449] gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida subsp. salmonicida A449] gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida subsp. salmonicida] Length = 231 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + GF V A E E N +++D M + Sbjct: 1 MHKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLLRL-AEQDFNLVLLDVMMPRLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D V L D + + G AGA+ +L KPF+ L +R + + Sbjct: 60 GFAMLAKLRE-THDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRR 118 Query: 121 QKSKDENQ 128 +S + Sbjct: 119 TQSAQPQR 126 >gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 227 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + F V EA EA + +E L++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L D + G G + ++ KPF+ + L + + + Sbjct: 65 EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 N L A Sbjct: 122 TGQDAGNDVLSA 133 >gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 236 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R + R GF V EA A E P+ +++D M + Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEK-PDLVILDLMMPEMG 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L +++ I G GA+ ++ KPFN L +R + + Sbjct: 60 GY-EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRR 118 Query: 121 QKS 123 + Sbjct: 119 TQQ 121 >gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)] gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 256 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 2/116 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V +V + G+ V A EA P+ +V+D + G+ Sbjct: 30 RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARA-AGHRPDLVVLDLMLPGMDGL 88 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R G V V L D + + G GA+ ++ KPF+ L + + Sbjct: 89 EVCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 143 >gi|262172302|ref|ZP_06039980.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio mimicus MB-451] gi|261893378|gb|EEY39364.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio mimicus MB-451] Length = 1112 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A E E ++E P L++D M G+ Sbjct: 707 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREK-PELLLLDIMMPGMSGYQ 765 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 766 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 823 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 824 ASKAELRRIE 833 >gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 239 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L++VD +R++ GF VF A A + ++ P+ +V+D + + F Sbjct: 7 RLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLV-RDTEPDLVVLDVMLPDMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V +L D + I G G + ++ KPF+ E + +R + + Sbjct: 66 TVTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 123 >gi|284037394|ref|YP_003387324.1| Fis family transcriptional regulator [Spirosoma linguale DSM 74] gi|283816687|gb|ADB38525.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirosoma linguale DSM 74] Length = 488 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD V G+ V A A E LP+ +++D M G+ F Sbjct: 12 TILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQA-TFALPDLILLDIMMPGMDGF 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q P + V ++ + + G GA ++ KPF + + + + Sbjct: 71 ETCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTHLSL 130 Query: 121 QKSKDENQFLDA 132 ++ + + L A Sbjct: 131 RRLQQSMEQLVA 142 >gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL F2-208] gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL N1-067] gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL S4-171] Length = 237 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + N GF V+ A EA E E E+ P+ +++D + G Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119 Query: 120 MQ 121 Sbjct: 120 RH 121 >gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] Length = 228 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 44/127 (34%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R G+ EA + EA + ++D + + Sbjct: 1 MKKVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRNPDIKVALLDIMLPDMD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + + + L + G GA+ ++ KPF+ L + L + Sbjct: 61 GFEVCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRR 120 Query: 121 QKSKDEN 127 ++ Sbjct: 121 TGGAEKE 127 >gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 975 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLL D + +R R + + F V A E +P+ ++ D M Sbjct: 613 RLLLADDNADMRDYVRRVLSSS-FEVEAVPDGQAALEAARA-CVPDLILTDVMMPRLDGF 670 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ PL V V L E + G AGA+ +++KPF+ L + ++ Sbjct: 671 GLLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARVCSTLEL 730 Query: 121 QKSKDENQFLDA 132 + + E+ +A Sbjct: 731 SRMRRESSLQEA 742 >gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 237 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ G+ V A S EA +E + +V+D + G+ Sbjct: 1 MGHVLIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKV-REGNVDLVVLDVMLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G + V +L D + G G + ++ KPF L ++ + + Sbjct: 60 GLSLCRSWRDDGIGIPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLRR 119 Query: 121 QKSKDENQ 128 + Q Sbjct: 120 AAASSRRQ 127 >gi|153869319|ref|ZP_01998959.1| sensory box/GGDEF family protein [Beggiatoa sp. PS] gi|152074149|gb|EDN71035.1| sensory box/GGDEF family protein [Beggiatoa sp. PS] Length = 576 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + R L + G+ + A + EA + E +P+ +++D M G+ F Sbjct: 6 TILIVDDETVSRYTVEVLLSAEGYNLVFAENGEEALKKA-AESIPDLMLLDVMMPGMDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P ++ + + D + + G AGA+ F+ KPF+R LR +R + ++ Sbjct: 65 EVCQRLRTNPRLAELPIVMVTALDDRDSRLRGIEAGADDFMSKPFDRAELRARVRTITRL 124 Query: 121 QKSKDENQFLDAI 133 + + + + + Sbjct: 125 NRYRRLIETEEQL 137 >gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 232 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+VD + ++ + G+ FEA S A E K + +++D M Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEIL-KHNKVDLVILDIMMSDKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++ V L + + I G GA+ ++ KPF+ + L ++ L Sbjct: 60 GYEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119 Query: 119 QMQKSKD 125 + +S Sbjct: 120 RRVESLK 126 >gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL J2-003] Length = 225 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIIETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|119488886|ref|ZP_01621848.1| sensory box histidine kinase [Lyngbya sp. PCC 8106] gi|119455047|gb|EAW36189.1| sensory box histidine kinase [Lyngbya sp. PCC 8106] Length = 401 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+VD + + + G+ V A + A + P+ +++D M Sbjct: 7 SILIVDDIEDNLLLLTAILTEKGYQVQSAVNGLSALSLAVQN-RPDLILLDIMMPDINGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ + ++ + + GA +L KP L ++ + Sbjct: 66 EVCHRLKADPRTKDIPIIFISALGEVFDQVKAFSIGAVDYLTKPIRIPELLSRVKTHLSL 125 Query: 121 QKSKDENQFLDA 132 + + E + +A Sbjct: 126 HQLQKELKEKNA 137 >gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 256 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ + G A EA E E P +++D + F Sbjct: 33 TVLVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLE-ERRPQVIILDVMLPDTDGF 91 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + L + G GA+ ++ KPF+ L ++ L + + Sbjct: 92 TLCRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTE 151 Query: 123 SKDEN 127 + + Sbjct: 152 GRRQQ 156 >gi|218440571|ref|YP_002378900.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7424] gi|218173299|gb|ACK72032.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7424] Length = 380 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 7/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D ++K+ V A++ E E K L P+ ++ D M G+ Sbjct: 1 MAQILIIDDDSAIQKLLSRALTRSHHEVILASNGTEGIEKAIK-LRPDLIICDWLMPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 V+ +P + F L E I G AGA+ FL KP L+ +R Sbjct: 60 GIQVCRQVKMIPELSTTFFILLTALGSVEDRIIGLDAGADDFLCKPIEINELQARVRSGL 119 Query: 119 QMQK----SKDENQFLD 131 ++ + + + + L+ Sbjct: 120 RLHQLSHDLQQQKKLLE 136 >gi|323498262|ref|ZP_08103264.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326] gi|323316690|gb|EGA69699.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326] Length = 240 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ G+ V ++ E P+ +++D + G F Sbjct: 4 RILVVDDDEEIRELLDEYLTKSGYQVATVGDGEALKQHLEVHGYPDLVLLDVMLPGDDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++R+ V + L D I G GA+ ++ KPFN L ++ + + Sbjct: 64 TLCQYIRRESS---VPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKAVLRR 120 Query: 121 QKSKDENQFLDAI 133 +E++ DA+ Sbjct: 121 VHL-NEDKTSDAL 132 >gi|255028239|ref|ZP_05300190.1| hypothetical protein LmonL_01479 [Listeria monocytogenes LO28] Length = 202 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|126738480|ref|ZP_01754185.1| response regulator [Roseobacter sp. SK209-2-6] gi|126720279|gb|EBA16985.1| response regulator [Roseobacter sp. SK209-2-6] Length = 423 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 + +L+VD S + R++ +GF V EA S A E C +E P+ ++ D M G+ Sbjct: 19 NRVLVVDDSRLQRRILVASLKKWGFEVIEADSGEAAMEICLQES-PDLILSDWMMPGMSG 77 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 +EF RQ + L + + ++ G AGA+ FL KP + + LR + Sbjct: 78 IEFCQAFRQRSKDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 137 Query: 117 LPQMQKSKDENQFL 130 + +MQ+ E + Sbjct: 138 ILRMQRELSEKNRI 151 >gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 235 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A A E E E P+ +++D + + Sbjct: 3 KKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAEN-PDLIILDLMLPKIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 62 LEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120 Query: 122 KSKD 125 + Sbjct: 121 ATLK 124 >gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 233 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 9/125 (7%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + V + + V A EA + KE + +++D + Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLF-KETSFHLIILDLMLP 59 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + +R+ ++V + L +V+ E + G GA+ +L KPF+ L ++ Sbjct: 60 KLSGEEVCSKIRES---SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116 Query: 116 ELPQM 120 L + Sbjct: 117 ALIRR 121 >gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] Length = 226 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + G++V EA EA E +E +++D M + Sbjct: 5 KILIVDDESRMRKLVKDFLGREGYLVREAGDGMEALEIFYEEKDIALIILDVMMPRMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 QTCREIRQS---SQVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 + +DA Sbjct: 122 SHAIGTGDVIDA 133 >gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 238 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R++ + F + EA + A E E + +++D M + Sbjct: 6 RILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMAL-ETEYDVILLDLMMPKLDGM 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 QVCEELRK---TKATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRR 121 Query: 121 QKSKD 125 + Sbjct: 122 ASATK 126 >gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 230 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A + E K+ + +++D M + F Sbjct: 4 KILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKV-KDSNFDLIILDVMMPKIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ + + L + D I G GA+ +++KPF+ L ++ + + Sbjct: 63 TV-LRELRKTRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRYD 121 Query: 123 SKDE 126 + E Sbjct: 122 FETE 125 >gi|281421933|ref|ZP_06252932.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri DSM 18205] gi|281403987|gb|EFB34667.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri DSM 18205] Length = 231 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ V A S EA E + L++D M G+ Sbjct: 5 MKRILVVDDEQDLCEILKFNLETEGYEVETANSAEEALEMDIAS--FDLLLLDVMMGGMS 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ P+ +V + +L + G GA+ ++ KPF+ + +R + Sbjct: 63 GFQLAKQLKGNPMTANVPIIFLTARDTENDTVTGFNIGADDYISKPFSIREVMVRVRAVL 122 Query: 119 QMQKSKD 125 + + Sbjct: 123 RRTAEQA 129 >gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17] gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17] Length = 230 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD + ++ G++ +A A + P+ +++D + G Sbjct: 4 KTILIVDDESAICEMVTVALEMAGYVCLQAADAKAA-HTLIVDKRPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ + + L +V+ + I G +GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 230 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + + + + G++V A EA E P+ +++D + +E Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMA-SERAPDLVILDWMLPKVSGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +V + L + I G GA+ +++KPF+ L +R + + Sbjct: 64 VCRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLRRI 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|332708874|ref|ZP_08428845.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya majuscula 3L] gi|332352416|gb|EGJ31985.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya majuscula 3L] Length = 381 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 7/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D ++ + + G+ V A++ E EK L P ++ D M G+ Sbjct: 1 MNQILIIDDDPAMQMLLKRALCHQGYEVAVASNGEEGLVQVEK-LRPALVICDWIMPGMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + + E + G AGA+ FL KP L +R Sbjct: 60 GLDVCRQLKVTPGLSTTIFILVTSRNSIEDRVEGLDAGADDFLCKPIEIAELNARVRAGL 119 Query: 119 QMQK----SKDENQFLD 131 ++ + + + Q L+ Sbjct: 120 RLHQLSHDLQHQKQLLE 136 >gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R G+ V A +A + P+ LV+D +M + Sbjct: 2 RILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASN-RPDALVLDLNMPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D+ + L ++G AGA+ +L KPF E L MR L + Sbjct: 61 EVCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ D +R++ + G+ V A+ EA + K+ P+ +V+D M Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLF-KDYEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] Length = 229 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LLLV+ + ++ + F + G+ V EA E +P+ +++D +EG + Sbjct: 5 KLLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAM-VLASEDVPDLIILDWMIEGTSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + L + + G GA+ +L KPF+ L + + + Sbjct: 64 EVCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRR 123 Query: 121 QKSKDENQFLD 131 + + ++ Sbjct: 124 IRPALAGETIE 134 >gi|312131620|ref|YP_003998960.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311908166|gb|ADQ18607.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1299 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + R + F + EA + EA E P+ +V D +M G+ L Sbjct: 1051 KILVVEDNEDFRFYLLDNLREE-FALEEARNGEEAWEKVLS-YHPDLIVSDINMPGMSGL 1108 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ P + V L I G +GA+ +++KPFN E L +R + Sbjct: 1109 ELCRKIRRDPRTKHIPVILLTAISSDSAQIEGLDSGASDYIIKPFNVELLLTKLRTQLKQ 1168 Query: 121 QKSKDE 126 + S ++ Sbjct: 1169 KSSLEK 1174 >gi|262404218|ref|ZP_06080773.1| putative two-component response regulator [Vibrio sp. RC586] gi|262349250|gb|EEY98388.1| putative two-component response regulator [Vibrio sp. RC586] Length = 236 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ + GF V A + + E P+ +++D M G Sbjct: 5 KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHN-PDLIILDIMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + + G GA+ ++ K F+ L ++ + + Sbjct: 64 FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120 Query: 120 MQKSKD 125 + D Sbjct: 121 RSQLSD 126 >gi|262165983|ref|ZP_06033720.1| putative two-component response regulator [Vibrio mimicus VM223] gi|262025699|gb|EEY44367.1| putative two-component response regulator [Vibrio mimicus VM223] Length = 236 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ + GF V A + + E P+ +++D M G Sbjct: 5 KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHN-PDLIILDIMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + + G GA+ ++ K F+ L ++ + + Sbjct: 64 FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120 Query: 120 MQKSKD 125 + D Sbjct: 121 RSQLSD 126 >gi|153825200|ref|ZP_01977867.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] gi|149741179|gb|EDM55230.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] Length = 236 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ + GF V A + E P+ +++D M G Sbjct: 5 KQILVVDDNQELREALKDYLGKVGFEVICAENGSAMWNRLENHH-PDLIILDIMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + + G GA+ ++ K F+ L ++ + + Sbjct: 64 FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120 Query: 120 MQKSKD 125 + D Sbjct: 121 RSQLSD 126 >gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 241 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR----EFCEKELLPNYLVIDESM 56 M +LLVD + L G+ V A A + ++ L + L++D + Sbjct: 1 MSQILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWML 60 Query: 57 E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +E +R V +L + + + G AGA+ +L+KPF L + Sbjct: 61 PKLSGIEVCQELRSQSQL--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARV 118 Query: 115 RELPQMQKSKDE 126 R L + + + Sbjct: 119 RALLRRSEQFSQ 130 >gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 238 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + ++ GF F A A+ + +LP +++D + G L Sbjct: 13 RVLIVEDEPAIAELIAINLRHNGFQPFWAEDGESAQRELDA-VLPEVILLDWMLPGQSGL 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + L D +AG AGA+ ++ KPF+ + L +R + + Sbjct: 72 SLARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRR 131 Query: 121 QKSKD 125 + + Sbjct: 132 RAPEQ 136 >gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A++ E E + P+ ++ D M + Sbjct: 5 KRLLLIDDDPNLILLVKDYLEFRGYEVVAASNGLEGLEAM-RHFTPDLIICDVMMPEMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ +R + V +L + G GA+ +L+KPF E L + + + Sbjct: 64 YTFVQTIRSNSATDWIPVIFLSARGQTADRVRGLNTGADVYLVKPFEPEELVAQVESVLK 123 Query: 120 MQKSKDENQ 128 + + Q Sbjct: 124 HTERLLQMQ 132 >gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] Length = 226 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 58/136 (42%), Gaps = 5/136 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + ++ + + G+ V + + KE P+ +++D + Sbjct: 1 MKKILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLK-TKEFQPDLILLDWMLPNIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +R + V L + E + G GA+ ++ KPF+ + + + + Sbjct: 60 GIDLLKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVL 119 Query: 119 QMQK--SKDENQFLDA 132 + K S ++ + L A Sbjct: 120 RRYKYTSNEKIEVLKA 135 >gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M S+LLVD + + GF AT+ +A + +P+ +++D + Sbjct: 1 MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRR-RVPDLVLLDVMLPDVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P V V L + D + G GA+ ++ KPF+ L ++ + Sbjct: 60 GTEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVL 119 Query: 119 QMQKSKDENQFLDAI 133 + ++ + +++ Sbjct: 120 RRAGARPSERPPESV 134 >gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 228 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +R + + G +A EA + E + + +++D M + Sbjct: 3 TSILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLE-QKEFDLIILDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 62 IEACMKIREE-RNLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRY 120 Query: 122 K 122 K Sbjct: 121 K 121 >gi|113476325|ref|YP_722386.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167373|gb|ABG51913.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1119 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + +V R+ + + EA + EA E EK L+P+ +++D M + Sbjct: 717 TVLIVDDEPVNLQVIRNNLALQNYAITEANNGIEALEMIEKGLMPDLILLDVMMPHMTGY 776 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ L ++ + L + ++ G +GAN +L+KPF+++ L ++ ++ Sbjct: 777 EVAKKLREKYLHIELPIIMLTAKPLVSDLVEGFVSGANDYLIKPFSKQELLARIKIHIRL 836 Query: 121 QK 122 K Sbjct: 837 SK 838 >gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08] Length = 227 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + L G+ V A EA E+ P+ LV D M + Sbjct: 6 TVLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAA-TSPDLLVADVVMPVMDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G V + L D +AG AGA+ +L KPF + L +R + + Sbjct: 65 GLCRMLRA--AGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARR 122 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+V+ + ++ + G+ F ++ A +F + P +++D + Sbjct: 21 MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFV-QHRAPQLVLLDWMLPDRS 79 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L ++ +R + V L + E IAG GA+ ++ KPF+ L ++ L Sbjct: 80 GLHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALL 139 Query: 119 QMQKSKDENQFLDA 132 + + + + + A Sbjct: 140 RRKSPEHAQEVMSA 153 >gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 229 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R++ + + G+ V +T EA +KE P+ +++D + + Sbjct: 5 KILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKES-PDLVILDLWLPDLDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + + IAG GA+ ++ KPF+ L ++ + + Sbjct: 64 EVCRQLRAKYA---IPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRR 120 Query: 121 QKSKD 125 + D Sbjct: 121 VQGSD 125 >gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ D +R++ + G+ V A EA + K+ P+ +V+D M Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLF-KDYDPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + Sbjct: 126 IDKEQ 130 >gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816] gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes str. Scott A] Length = 225 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 229 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + R GF V A E + + +++D + GV Sbjct: 1 MSRILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTD-QFDLVILDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VRQ + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICREVRQK---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + +V + + G+ A EA++ K P+ +++D M Sbjct: 1 MSKILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQV-KGFKPDLILLDIIMPETD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R+ V L + D + G GA+ +++KPF+ + L ++ + Sbjct: 60 GYEILKWIRRE---HQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 233 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R + + G+ V + EA + E P+ +V+D + G+ Sbjct: 4 RILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARP-PDLVVLDLMLPGMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V+V L + G GA+ ++ KPF+ L +R + + Sbjct: 63 EVCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRRLQ 122 Query: 123 SKDE 126 E Sbjct: 123 LDRE 126 >gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD V KV G+ V +AT+ EA E +E P+ +V+D + + F Sbjct: 5 SILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRES-PDLIVLDVMLPKMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 64 AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120 >gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC 12478] Length = 1405 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + +R+ L + V + +A E +P+ ++ D M + Sbjct: 647 RVLVADDNADMREYLTRLLRSADYRVEAVSDGRQALAVIRAE-VPDLVISDVMMPRLDGL 705 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R P V V L E + G AGA+ +L+KPF L +R QM Sbjct: 706 ALVAQLRADPRTAAVPVLLLSARAGQEASVEGLDAGADDYLVKPFAATELLARVRANVQM 765 Query: 121 QKSKDENQF 129 + ++ + Sbjct: 766 TRLRNHHAR 774 >gi|218246672|ref|YP_002372043.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 8801] gi|218167150|gb|ACK65887.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 8801] Length = 379 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + + + G+ V + + +EL P+ ++ D M G Sbjct: 1 MAQILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKA-QELCPDLIICDWVMPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + V+ P F L E + G AGA+ FL KP L +R Sbjct: 60 GLEVCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSGL 119 Query: 119 QMQKSKDENQ 128 ++ + + + Sbjct: 120 RLHELSQDLK 129 >gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] Length = 265 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + + GF+V EA E E +P+ +++D + G L Sbjct: 29 RILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEA-EIRLSETMPDLVILDWMLPGVSGL 87 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + V L + + + G GA+ +++KPF+ L +R L + Sbjct: 88 EICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRR 147 Query: 121 QKSKDENQFLDA 132 + L A Sbjct: 148 ARPDRVAAVLSA 159 >gi|312795607|ref|YP_004028529.1| phosphate regulon transcriptional regulatory protein phoB [Burkholderia rhizoxinica HKI 454] gi|312167382|emb|CBW74385.1| Phosphate regulon transcriptional regulatory protein phoB [Burkholderia rhizoxinica HKI 454] Length = 256 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+++ + ++ G A + +A + ++LP+ +++D + G Sbjct: 27 SILVIEDEPAISELIAVNLQHAGHCPIRAYNAEQA-QRLISDVLPDLVLLDWMLPGKSGV 85 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + + G GA+ ++ KPF+ + L ++ + + Sbjct: 86 AFARELRSNERTKHIPIIMLTARGEEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 145 Query: 121 QKSK 124 + + Sbjct: 146 RAPQ 149 >gi|258591258|emb|CBE67555.1| Two-component response regulator (fragment) [NC10 bacterium 'Dutch sediment'] Length = 329 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+VD + ++ L G+ V A EA P+ +++D M + Sbjct: 12 RLLVVDDNAQNIELLTALMEAEGYEVISAADGLEALTHVAAAP-PDLILLDIMMPKLDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ V + L E I G AGA+ F+ KPF+R L+ +R L ++ Sbjct: 71 AVCRRLKEEAATRLVPIVLLTALGAEEARIRGIEAGADDFITKPFSRTELKARIRSLLRL 130 Query: 121 QKSKDENQFLDAI 133 + DE + + + Sbjct: 131 KSFTDELEHAETM 143 >gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] Length = 232 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA + E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161] gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 225 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 273 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + + + GF V EA + +E P+ +++D + G + Sbjct: 42 KILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEP-PDLILLDLMLPGTDGI 100 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + + + + + G GA+ ++ KPF+ L ++ + Sbjct: 101 EICRKVREKYR---MPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRR 157 Query: 121 QKSKDE 126 + E Sbjct: 158 VRDHGE 163 >gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] Length = 229 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V + GF V +A + E E +P+ +V+D M + Sbjct: 7 TVLIVEDELAQREVLAYNLEADGFRVLKAENGEEGL-LVVDEQMPDVIVLDWMMPNLSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 SRPSAVGLRLE 136 >gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ R G+ V A EA L P+ +++D + G+ Sbjct: 5 RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNA-LKPDIILLDIMLPGIDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + + +V+ + G GA+ +++KPF+ + + ++ + + Sbjct: 64 QVCREIRKK---SNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120 Query: 121 QKSKDENQFLDAI 133 + + Sbjct: 121 VGQSSAESEIKEV 133 >gi|239908712|ref|YP_002955454.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239798579|dbj|BAH77568.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 389 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 6/136 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + RK+ G+ V T+ EA + ++ P ++D M + Sbjct: 2 RILIAEDDPASRKILTVCLEKLGYQVVATTNGLEAWQAMQQADAPKLAILDWMMPEIDGV 61 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117 +R + ++ L E + G AGA+ +L KPFN L+ ++ L Sbjct: 62 EVCRRLRAINARQQPYLILLSALGTKEDIAKGLDAGADDYLTKPFNVLELQARIKVGVRL 121 Query: 118 PQMQ-KSKDENQFLDA 132 +MQ + + + ++A Sbjct: 122 LEMQARLRQSMETIEA 137 >gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 232 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + R + + A + +A + E+ + +++D + + Sbjct: 7 NILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIF-EITYDLILLDIMLPLMDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + V L D E + G GA+ +L KPF+ L +R L + Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125 Query: 123 SKD 125 +D Sbjct: 126 KRD 128 >gi|159898864|ref|YP_001545111.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891903|gb|ABX04983.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 243 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + R G V A + +A E +E +P+ +++D M G+ Sbjct: 11 KLILVVDDEPRLVTFMRVNLEAEGCRVISAENGRKALEKV-REDMPDAVLLDIMMPGLDG 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R++ + + V +L + + + I G GA+ ++ KPF+ L +R + + Sbjct: 70 Y-ETLRRLREFSSIPVIFLTAKDEEDDRIRGLELGADDYIGKPFSHRELVSRLRAVLRRH 128 >gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 224 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + R G+ V A+ +A + ++ P+ +V+D + G+ Sbjct: 1 MSTILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQP-PDLVVLDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ +DV + L +AG AGA+ +L+KPF E L +R + Sbjct: 60 GLEVA-RRLRAASDVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRR 118 Query: 121 QKSKDENQFL 130 ++ +D L Sbjct: 119 RQREDAATVL 128 >gi|75761471|ref|ZP_00741436.1| Two-component response regulator yycF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491032|gb|EAO54283.1| Two-component response regulator yycF [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 173 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + GF + A EA E +E P+ +++D + G Sbjct: 4 KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119 Query: 120 MQKS 123 + Sbjct: 120 RHQQ 123 >gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 243 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ R D G+ V A E E E + LV+D + G+ Sbjct: 5 RRVLIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLE-EGGWDALVLDLMLPGIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L +R L + Sbjct: 64 LEICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRT 123 Query: 122 KSKDENQFLDA 132 ++ + N +DA Sbjct: 124 EALERNARIDA 134 >gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 232 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M S+L+VD + ++ + G+ FEA S A E K + +++D M Sbjct: 1 MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEIL-KHNKVDLVILDIMMSDKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++ V L + + I G GA+ ++ KPF+ + L ++ L Sbjct: 60 GYEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119 Query: 119 QMQKSKD 125 + +S Sbjct: 120 RRVESLK 126 >gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 226 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 6/135 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+ D ++R++ G+ V EA +A + ++ P+ +++D M G Sbjct: 1 MERILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQK-PDLVLLDVMMPGYD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V + + + + + G + ++ KPF+ + L M+ L Sbjct: 60 GWTVCREIR---RTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALL 116 Query: 119 QMQKSKDENQFLDAI 133 + + E DA+ Sbjct: 117 RRLHGEGEENGADAV 131 >gi|255035394|ref|YP_003086015.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948150|gb|ACT92850.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1366 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+ + + +R L + + V +A EA + K +LPN ++ D M + Sbjct: 1114 TVLIAEDNAELRDYMASLLENQ-YTVLKAADGQEALSWARK-VLPNLIISDLMMPRMDGM 1171 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + E I G + GA+ +L KPF+ E L + L ++ Sbjct: 1172 ELTVSIKSDERTSHIPVILLTAKSGQESRIDGLKTGADDYLTKPFSVEELTVRVANLIEL 1231 Query: 121 QKSKDE 126 +K E Sbjct: 1232 RKKLAE 1237 >gi|268593356|ref|ZP_06127577.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM 1131] gi|291311053|gb|EFE51506.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM 1131] Length = 232 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF V A +A + + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDSS--IDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ+ V L + G GA+ +L KPFN L +R L Sbjct: 59 GIETLKELRQI---HQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALL 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRSNWSEQTQ 125 >gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6] gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R + G+ V A EA E P +V+D + + Sbjct: 4 RILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAV-HWRPEVIVLDLGLPVMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + L + GA+ +L+KPF + L +R + Sbjct: 63 EVCRRIR---GWSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALRH 119 Query: 121 QKSKDEN 127 N Sbjct: 120 SSHIQAN 126 >gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria sp. R11] gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria sp. R11] Length = 229 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V + GF V A + EA +E P+ +V+D M + Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVLRAENGEEAL-LIVEEDTPDIIVLDWMMPNLSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ ++ + L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 VRPSTVGVRLE 136 >gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 234 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R+ + D F V A++ E E +K P+ ++ D M Sbjct: 8 RLLLVDDEPGLREAVQAYLEDSNFNVDVASNGREGWELLQKNP-PDLVISDIMMPQVDGY 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F++ +R+ P + V +L + I G +AG ++++ KPF+ + L + L Sbjct: 67 QFLSQMREDPRFKAMPVVFLTAKGMTTDRIQGYQAGCDAYISKPFDPDELVAIVTNLLVR 126 Query: 121 QKSKDE 126 + + E Sbjct: 127 RAAAKE 132 >gi|86608608|ref|YP_477370.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557150|gb|ABD02107.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 339 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 7/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+VD R + L G+ V EA S +A + K P+ +++D M G+ F Sbjct: 24 LLIVDDQPNSRLLLGDLLQSIGYRVSEAESGNQALQML-KTFQPDLILLDVMMPGLDGFE 82 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V + D + + G AGA+ FL KPF+ L +R L + + Sbjct: 83 VCRRIKANDETRLIPVVLVTAASDHKNRVRGIEAGADDFLSKPFDESELLARVRSLVRQK 142 Query: 122 KSKDEN----QFLDAI 133 ++ Q L AI Sbjct: 143 HLNEDLDHAAQVLFAI 158 >gi|312962809|ref|ZP_07777296.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311282836|gb|EFQ61430.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 244 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + + GF V E + +++D + Sbjct: 6 KSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGA-GFRQAMNEAPCDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ P V + L D + G GA+ ++ KPF+ L+ ++ L + Sbjct: 65 FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124 Query: 120 M 120 Sbjct: 125 R 125 >gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M S+LLVD + + GF AT+ +A + +P+ +++D + Sbjct: 1 MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRR-RVPDLVLLDVMLPDVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P V V L + D + G GA+ ++ KPF+ L ++ + Sbjct: 60 GTEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVL 119 Query: 119 QMQKSKDENQFLDAI 133 + ++ + +++ Sbjct: 120 RRAGARPSERPPESV 134 >gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] Length = 240 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ GF V + KE + +++D + G+ Sbjct: 3 KRILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRA-KEADFDLIILDLMLPGMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + V + L + D + G GA+ ++ KPF+ + +R + + Sbjct: 62 MDVCRQLRQEQIF--VPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILR 119 Query: 120 MQKS 123 + Sbjct: 120 RIEQ 123 >gi|294505895|ref|YP_003569953.1| two-component system sensor histidine kinase/response regulator, hybrid [Salinibacter ruber M8] gi|294342223|emb|CBH23001.1| two-component system sensor histidine kinase/response regulator, hybrid [Salinibacter ruber M8] Length = 802 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + +V + R + V EA E LLP+ ++ D M Sbjct: 533 TTVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLART-LLPDLVISDVMMPEVDG 590 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++Q P V V +L D E + G GA+++L KPF E L + L Sbjct: 591 FELCRKIKQDPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLIA 650 Query: 120 MQKSKDE 126 +++ E Sbjct: 651 TRRTLRE 657 >gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4] Length = 238 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 5/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ G+ V A E E + P+++V+D + + Sbjct: 3 KKILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDK-PDFIVLDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++RQ + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKNLRQQKMM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILR 119 Query: 120 MQK 122 + Sbjct: 120 RTQ 122 >gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563] Length = 255 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ G+ V +A E +++++D + + Sbjct: 1 MKKVLIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAM-NHQLDFIILDLMLPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++RQ + + + L + D + I G GA+ ++ KPF+ + M+ + Sbjct: 60 GMDVCKNLRQNKI--NTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIL 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] Length = 227 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + F V EA EA + +E L++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L D + G G + ++ KPF+ + L + + + Sbjct: 65 EVCREIRKNSK---VPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 N L A Sbjct: 122 TGQDAGNDVLSA 133 >gi|115352497|ref|YP_774336.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282485|gb|ABI88002.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 251 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 11 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 69 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 70 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 129 Query: 120 MQKS 123 +++ Sbjct: 130 RRRA 133 >gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262] gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL J2-064] gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL J1-208] gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262] gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816] gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220] gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes str. Scott A] Length = 237 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + N GF V+ A EA E E E+ P+ +++D + G Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119 Query: 120 MQ 121 Sbjct: 120 RH 121 >gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 238 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V A EA + K++ P+ +++D + V Sbjct: 3 KKILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQV-KDVDPDLIILDLMLPKVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D + + + + G GA+ ++ KPF+ L ++ + Q Sbjct: 62 LEVA-REVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120 >gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 232 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+VD + ++ + G+ FEA S A E K + +++D M Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEIL-KHNKVDLVILDIMMSDKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++ V L + + I G GA+ ++ KPF+ + L ++ L Sbjct: 60 GYEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119 Query: 119 QMQKSKD 125 + +S Sbjct: 120 RRVESLK 126 >gi|237725226|ref|ZP_04555707.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229436492|gb|EEO46569.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1446 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ + +R+ + + + V A E E+E +P++++ D M + Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEE-VPDFIITDIMMPRMDGI 1247 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I H+++ D+ + L + E I G + G + ++ KPF+ + L+ + L + Sbjct: 1248 ELIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307 Query: 121 QK-----------SKDENQFLDAI 133 +K ++ + + L+AI Sbjct: 1308 RKVLQSAFLSKYGAQPKKEPLEAI 1331 >gi|186476911|ref|YP_001858381.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184193370|gb|ACC71335.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 241 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 3 TQILVVDDDVELRDLLRDYLARQGIEVSVLHDASS-LERRIERERPDLIVLDLMMPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + G D+ V L D I G GA+ +L KPFN L ++ + + + Sbjct: 62 LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121 Query: 122 K 122 K Sbjct: 122 K 122 >gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 227 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + ++ GF + + A KE LP +++D + G+ Sbjct: 5 KKIYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKI-KEELPLLIILDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ T+V + L + D + G GA+ +++KPF+ + L ++ + + Sbjct: 64 MTLCKEVRK---FTNVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLR 120 Query: 120 MQKSKD 125 + ++ Sbjct: 121 RYEHEE 126 >gi|83815858|ref|YP_444228.1| sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83757252|gb|ABC45365.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Salinibacter ruber DSM 13855] Length = 802 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + +V + R + V EA E LLP+ ++ D M Sbjct: 533 TTVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLART-LLPDLVISDVMMPEVDG 590 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++Q P V V +L D E + G GA+++L KPF E L + L Sbjct: 591 FELCRKIKQDPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLIA 650 Query: 120 MQKSKDE 126 +++ E Sbjct: 651 TRRTLRE 657 >gi|291568908|dbj|BAI91180.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 483 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD ++ +++ G+ V ATS A + P+ +++D M + Sbjct: 14 TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTR-FRPDLILLDIMMPEMDGY 72 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ P D+ V +L + + G +L KPF E ++ + Sbjct: 73 QVCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQLTL 132 Query: 121 QKSKDENQ 128 + + + + Sbjct: 133 RSLQKQLE 140 >gi|284050575|ref|ZP_06380785.1| response regulator receiver modulated diguanylate cyclase [Arthrospira platensis str. Paraca] Length = 487 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD ++ +++ G+ V ATS A + P+ +++D M + Sbjct: 18 TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTR-FRPDLILLDIMMPEMDGY 76 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ P D+ V +L + + G +L KPF E ++ + Sbjct: 77 QVCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQLTL 136 Query: 121 QKSKDENQ 128 + + + + Sbjct: 137 RSLQKQLE 144 >gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 242 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E + ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFK-FVLLDIMMPKMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 134 RRTNEHKQIQ 143 >gi|212690595|ref|ZP_03298723.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855] gi|212666841|gb|EEB27413.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855] Length = 1440 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ + +R+ + + + V A E E+E +P++++ D M + Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEE-VPDFIITDIMMPRMDGI 1241 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I H+++ D+ + L + E I G + G + ++ KPF+ + L+ + L + Sbjct: 1242 ELIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1301 Query: 121 QK-----------SKDENQFLDAI 133 +K ++ + + L+AI Sbjct: 1302 RKVLQSVFLSKYGAQPKKEPLEAI 1325 >gi|307152260|ref|YP_003887644.1| AraC family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982488|gb|ADN14369.1| two component transcriptional regulator, AraC family [Cyanothece sp. PCC 7822] Length = 265 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + + GF + A + + + + LP+ ++ D M + Sbjct: 1 MTRILLIEDDDLNCTLLQECLESEGFHIISAENGLQGLQQARQH-LPDLILCDIMMPELD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ P+ + +L + + G GA+ +L KP E + A+ Sbjct: 60 GYSVLLQLRQDPITAFIPFIFLTAKTTKAEQRRGMELGADDYLTKPLTAEEVIAAVEARL 119 Query: 119 QMQKSKDE 126 + + + Sbjct: 120 ERKAMLER 127 >gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 231 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M + +++ + ++ + F GF V + A E ++E P+ +V+D M Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEK-PDIVVLDLMMPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LEF VR + + L + I G GA+ ++ KPF+ L ++ L Sbjct: 60 GLEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALL 119 Query: 119 QMQKS 123 + KS Sbjct: 120 RRSKS 124 >gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 248 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD V KV G+ V +AT+ EA E +E P+ +V+D + + F Sbjct: 5 SILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRES-PDLIVLDVMLPKMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 64 AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120 >gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 267 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 43 MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALD-AGLQGGIDLVVLDLGLPGMD 101 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + L D + G AGA+ ++ KPF L +R L + Sbjct: 102 GLEVARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 161 >gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] Length = 229 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K G V A EA E+ +K + +++D + + Sbjct: 3 KKILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKK-CEYDLVLLDVMLPKLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D+ V L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDEN 127 + E Sbjct: 119 RTAKRKEE 126 >gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 246 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + +V + GF E++ E P+ +++D + + Sbjct: 25 KILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFI-EYNPDLVLLDIMLPSMDGI 83 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + V L + + + G GA+ +++KPF + L ++ + + Sbjct: 84 DVLKWIRKE---HETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRR 140 >gi|330996298|ref|ZP_08320183.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila YIT 11841] gi|329573490|gb|EGG55097.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila YIT 11841] Length = 230 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + R +FG V A A +E + + LV+D M + Sbjct: 6 MAKILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAML-QEGVFDLLVLDVIMPKMD 64 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R V L E ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 65 GLEVCRQFRLKEGY-HTPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 123 Query: 119 QMQKSKDENQF 129 + K + + Q Sbjct: 124 RRGKERPDRQL 134 >gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R F V EA + EA + E P+ +++D + + F Sbjct: 4 RILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEK-PDLVLLDIMLPDMDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V L + G GA+ +++KPF+ L ++ + + Sbjct: 63 QVCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRRAG 122 Query: 123 SKD 125 ++ Sbjct: 123 KQN 125 >gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 237 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A E +++LP+ ++ D M Sbjct: 12 RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFSKA-QQMLPDVVITDVMMPRLDGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V +L + G AG + ++ KPF+ + L +R + Q Sbjct: 71 GLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 130 Query: 121 QK--SKDENQFLDA 132 Q+ ++ +F DA Sbjct: 131 QQRLLQEAARFADA 144 >gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1322 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + + + + + +G+ V A A + E LP+ +++D M + Sbjct: 12 NILVVDDNPVNLVILSKVLSKYGYKVRSAPDGEMALKSVEA-KLPDLILLDIMMSDMNGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ D+ V ++ + + G ++ KPF + + + ++ Sbjct: 71 EVCNRLKTNEKTRDIPVIFISALEEPLDKVKAFTLGGADYIAKPFQTQEVIARVENQLRI 130 Query: 121 QKSK----DENQFL 130 ++ + ++N+ L Sbjct: 131 RRLQNQLVEQNEQL 144 Score = 107 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 9/132 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 LL+V++ ++ L GF V+ A + E E ++ P+ + +D M + Sbjct: 1104 RLLIVENQWESQQFLAELLVPLGFEVYTAENGQEGVELWQR-CQPHLIFMDIQMPVMNGY 1162 Query: 61 EFIAHVRQMPLG------TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 E +R M + + L E+ G + F+ KPF E L + Sbjct: 1163 EATQKIRAMEMNNLTDILQPTKIIALTASAFEEQRTYILSIGCDDFICKPFREEFLLNKL 1222 Query: 115 RELPQMQKSKDE 126 E ++ E Sbjct: 1223 AEHLGIKYIYAE 1234 >gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] Length = 240 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLVD + ++ + G+ A A + E E +++++D + + Sbjct: 1 MKKHILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHY-DFILLDIMLPQL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R G + + + + + GA+ ++ KPF+ L ++ + + Sbjct: 60 DGIEVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|323703413|ref|ZP_08115061.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] gi|323531594|gb|EGB21485.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] Length = 454 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + G+ V AT + E E +P+ +++D M + Sbjct: 3 RKILVIDDEEHMCWALEKGLRQEGYQVLTATRGKQGLELIRNE-VPSLVILDLKMPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR + + V + + I + GA ++ KPF+ + L+ +++ + Sbjct: 62 LEVLVRAKEMMPKLPVIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKLVVKQALMVN 121 Query: 122 KSKDENQFLDA 132 + + E FL + Sbjct: 122 QLEVEVNFLRS 132 >gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 244 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ R +++ EA + EA + + +++D + G + Sbjct: 12 KILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDY-DLILLDLMLPGKDGI 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G AG + +++KPF+ + ++ L + Sbjct: 71 EVCKQLREK---KATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 127 >gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 245 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A E +++LP+ ++ D M Sbjct: 20 RLLLVDDEPGLRTAVQAYLEDEGFDVTTAVDGEEGFTKA-QQMLPDVVISDVMMPRLDGY 78 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V +L + G AG + ++ KPF+ + L +R + Q Sbjct: 79 GLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNVAQR 138 Query: 121 -QKSKDENQFLD 131 Q+ E Sbjct: 139 QQRLLQEAARFA 150 >gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e] gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL R2-561] gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e] Length = 225 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] Length = 232 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] Length = 233 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E P+ +++D + + Sbjct: 1 MKRILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAEN-PDVIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-RTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QK 122 + Sbjct: 119 SE 120 >gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676] gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676] Length = 242 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 134 RRTNEHKQIQ 143 >gi|170078959|ref|YP_001735597.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886628|gb|ACB00342.1| Two-component response regulator; GGDEF domain protein [Synechococcus sp. PCC 7002] Length = 602 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+++ +R++ L + V EA + E P+ ++ D M G+ Sbjct: 9 TILVIEDEDSIRELIVTLLIAEDYQVLEAENGQIGVGIAI-ENRPDLIICDIMMPGMDGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ P + +L + E + G GA+ +L KPF L A++ + Sbjct: 68 GVLEILQADPETETIPFIFLTAKGTKENIRQGMNLGADDYLTKPFTTYELLDAIKTRLRK 127 Query: 121 QKS 123 +S Sbjct: 128 HRS 130 >gi|158338729|ref|YP_001519906.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158308970|gb|ABW30587.1| diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] Length = 333 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 17/147 (11%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD ++ + + G+ V +A + A + P +++D M + Sbjct: 35 KILLVDDQPQNLRLLTDVLEEQGYEVLQALNGNVALQAV-SLDQPQLILLDIQMPEMDGY 93 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P D+ V ++ + + G ++ KPF + ++ ++ Sbjct: 94 TVCQKLKADPSTQDIPVVFVSALDESWDKVKAFSVGGVDYITKPFKVVEVLARVQNQLKI 153 Query: 121 QKSKD--------------ENQFLDAI 133 Q+ + E Q L A+ Sbjct: 154 QQLQQALKTQNAQLHQANLELQRLAAL 180 >gi|50123231|ref|YP_052398.1| DNA-binding transcriptional regulator CpxR [Pectobacterium atrosepticum SCRI1043] gi|49613757|emb|CAG77208.1| two-component response regulator [Pectobacterium atrosepticum SCRI1043] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A + + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQIV--DNTIDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + D+ Q Sbjct: 116 RRSNWTDQQQ 125 >gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 225 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+++ + ++ G+ A E P+ +++D + G Sbjct: 1 MKTILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAARSNP-PDLILLDLMLPGLM 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +++ + + L + + + G GA+ +++KPF+ L ++ + Sbjct: 60 GTEICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D + ++ ++ G+ EA E + +E P+ +++D + + F Sbjct: 4 RILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLA-QEKNPDLILLDVMLPKMDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 TV-LRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRR 119 >gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 248 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ D +R++ + G+ V A+ EA + K+ P+ +V+D M Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLF-KDYDPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + Sbjct: 126 IDKEQ 130 >gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125] gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125] Length = 238 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R + + + V EA+ EA E + +++D M + Sbjct: 6 KILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALA-FDYDVILLDLMMPEMDGI 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + + + G G + +++KPF+ + ++ L + Sbjct: 65 EVCQKLRKQ---KATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 Query: 121 QKSKD 125 S Sbjct: 122 SSSTK 126 >gi|237709630|ref|ZP_04540111.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229456266|gb|EEO61987.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1446 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ + +R+ + + + V A E E+E +P++++ D M + Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEE-VPDFIITDIMMPRMDGI 1247 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I H+++ D+ + L + E I G + G + ++ KPF+ + L+ + L + Sbjct: 1248 ELIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307 Query: 121 QK-----------SKDENQFLDAI 133 +K ++ + + L+AI Sbjct: 1308 RKVLQSAFLSKYGAQPKKEPLEAI 1331 >gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland 1988] gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S] gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] Length = 225 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF EA +A E E P+ +++D + + F Sbjct: 4 KILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEK-PDLILLDIMLPKLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ + + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 TVC-RKLRESISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVA 121 Query: 123 SKDENQ 128 S E Q Sbjct: 122 SSAETQ 127 >gi|302877367|ref|YP_003845931.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302580156|gb|ADL54167.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 632 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 6/132 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD +R + + L G V A + EA E + +P ++ D M + Sbjct: 322 RILLVDDDRAIRLLYKTLLEKSGHTVTTACNGREALESLQAS-VPQLIISDWMMPEMDGI 380 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117 F +R+ P ++V+ + + +++I AGAN +L KP N + L +R + Sbjct: 381 EFCRELRKNPEWHKIYVFIVTAQESTDRLIEAFEAGANDYLSKPINPKVLAARLRSAQRI 440 Query: 118 PQMQKSKDENQF 129 QMQ++++E++ Sbjct: 441 VQMQEAQEEDRL 452 >gi|253686544|ref|YP_003015734.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753122|gb|ACT11198.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A + + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQVL--DNTIDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + D+ Q Sbjct: 116 RRSNWTDQQQ 125 >gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 214 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R D GF+V A S +E +P+ +V D M + Sbjct: 1 MQKILIVDDDRTLRAAITRYLEDRGFVVNSAASGLAGFNSFSQE-VPDLIVSDIVMPDMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R G + +L + E I G GA+ +L+KPF+ L + Sbjct: 60 GFELCTKIRNTDAGQLLPFIFLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKIEAQL 119 Query: 119 QM 120 Sbjct: 120 AR 121 >gi|134296588|ref|YP_001120323.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139745|gb|ABO55488.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] gi|325521611|gb|EGD00393.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 241 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R++ GF V A EA F E+ + P+ +V+D + + F Sbjct: 10 RLLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAER-IRPDLVVLDVMLPDMDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +G + V +L + +AG R A+ ++ KPF+ E + +R + + + Sbjct: 69 AVAGRLREMGGQMPVVFLTARDATDDKVAGLRV-ADDYVTKPFSLEEVLARIRAVLRRTR 127 >gi|262171161|ref|ZP_06038839.1| putative two-component response regulator [Vibrio mimicus MB-451] gi|261892237|gb|EEY38223.1| putative two-component response regulator [Vibrio mimicus MB-451] Length = 236 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ + GF V A + + E + P+ +++D M G Sbjct: 5 KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQN-PDLIILDIMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + + G GA+ ++ K F+ L ++ + + Sbjct: 64 FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120 Query: 120 MQKSKD 125 + D Sbjct: 121 RSQLSD 126 >gi|258621380|ref|ZP_05716414.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] gi|258626807|ref|ZP_05721614.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258580854|gb|EEW05796.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258586768|gb|EEW11483.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] Length = 236 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ + GF V A + + E + P+ +++D M G Sbjct: 5 KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQN-PDLIILDIMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + + G GA+ ++ K F+ L ++ + + Sbjct: 64 FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120 Query: 120 MQKSKD 125 + D Sbjct: 121 RSQLSD 126 >gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 246 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKG-QALAVQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V L + + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] Length = 227 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A +E P+ +++D + G+ F Sbjct: 4 RILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQF-QEHNPDLVLLDVMLPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D + L D ++ G AGA+ ++ KPF + L +R + Sbjct: 63 DVCRAIRRV---SDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119 Query: 121 QKSKDENQFLD 131 ++ ++ L Sbjct: 120 REDSQADEGLS 130 >gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + N G+ V EA EA + + LV+D M + + Sbjct: 5 KILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTKGIDLLVLDVMMPRMDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 VR++ ++V + L + + G G + ++ KPF+ + L + + + + Sbjct: 65 -EVVREIRKVSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRRTR 123 Query: 123 SKDENQFLDA 132 +D + L A Sbjct: 124 QQD-GEVLKA 132 >gi|221199375|ref|ZP_03572419.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] gi|221205723|ref|ZP_03578738.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221211588|ref|ZP_03584567.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|221168949|gb|EEE01417.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|221174561|gb|EEE06993.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221180660|gb|EEE13063.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] Length = 241 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 60 DGLTALRQLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|220907491|ref|YP_002482802.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7425] gi|219864102|gb|ACL44441.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7425] Length = 379 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D R + N G+ V A E E K LP+ ++ D M Sbjct: 1 MFRILVIDDDPTTRLLLSRKLNQQGYGVEVARDGVEGLEQAAK-FLPHLVICDWMMPMID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ P F L + D I G AGA+ FL KP + LR ++ Sbjct: 60 GLEVCRRLKADPRFATTFFVLLTAKDDIADRIQGLDAGADEFLSKPLEMDELRARVQAGL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + E + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 228 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V + G+ V A A+E PN +V+D + G+ Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPNLVVLDMILPGIDGM 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + ++V V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 123 SKDEN 127 ++ + Sbjct: 125 GEEPD 129 >gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 223 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 54/133 (40%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + + G+ V A + E+ + +++D + + Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPDIS 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ V V + + + G GA+ +++KPF+ + + ++ + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAIL 117 Query: 119 QMQKSKDENQFLD 131 + E + + Sbjct: 118 ARTSGESEVEKTE 130 >gi|227329683|ref|ZP_03833707.1| DNA-binding transcriptional regulator CpxR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A + + + L++D M Sbjct: 1 MNKILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQIL--DNTIDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + D+ Q Sbjct: 116 RRSNWTDQQQ 125 >gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 227 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + ++ GF A KE LP +++D + G+ Sbjct: 5 KKIYIVDDDRNICEIISLYLEKEGFATVRIGDGVTALNKI-KEELPLLIILDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ TDV + L + D + G GA+ +++KPF+ + L ++ + + Sbjct: 64 MTLCKEVRK---FTDVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLR 120 Query: 120 MQKSKD 125 + ++ Sbjct: 121 RYEHEE 126 >gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 231 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L+VD + ++ + +F GF V A+S A + CE++ P+ +++D M G+ Sbjct: 4 KRILVVDDETDLLEMVKSIFTRAGFTQVLTASSGEAALKMCEEQE-PDMMILDVMMPGMD 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A ++++ + + V L + E G GA+ +LLKPF + L F ++ + + Sbjct: 63 GF-AALKELRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKR 121 Query: 121 QKSKDENQ 128 + E + Sbjct: 122 VYPEKERK 129 >gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 234 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + ++ GF V A++ EA ++ P+ +V+D + + F Sbjct: 9 RLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQR-RRPDLIVLDVMLPDMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G+ V YL E + G G + ++ KPF+ + + +R + + Sbjct: 68 EIVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRR 125 >gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 47/125 (37%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V E + EA + + ++D + G+ Sbjct: 1 MSKVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGID 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + + +L +V + + GA+ + KPF+ L ++ L + Sbjct: 61 GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRR 120 Query: 121 QKSKD 125 + Sbjct: 121 VNVQR 125 >gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 228 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ + ++ GF A E ++ P+ +V+D + G+ Sbjct: 1 MKQRILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAA-RDSKPDLIVLDLMLPGM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L +R+ + + V + + D + G GA+ +++KPF+ L +R + Sbjct: 60 LGTEVCKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAI 119 Query: 118 PQM 120 + Sbjct: 120 LRR 122 >gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] Length = 225 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + ++ GF V A +A + ++ + +++D + G Sbjct: 1 MTRVLVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGA-DIVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + V V + + D + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQIRA---TSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|265754262|ref|ZP_06089451.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263234971|gb|EEZ20526.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1446 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ + +R+ + + + V A E E+E +P++++ D M + Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEE-VPDFIITDIMMPRMDGI 1247 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I H+++ D+ + L + E I G + G + ++ KPF+ + L+ + L + Sbjct: 1248 ELIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307 Query: 121 QK-----------SKDENQFLDAI 133 +K ++ + + L+AI Sbjct: 1308 RKVLQSAFLSKYGAQPKKEPLEAI 1331 >gi|261819497|ref|YP_003257603.1| DCpxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603510|gb|ACX85996.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A + + + L++D M Sbjct: 1 MNKILLVDDDKELTALLKELLEMEGFNVVVAYDGEQALQIV--DNTIDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + D+ Q Sbjct: 116 RRSNWTDQQQ 125 >gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|116625704|ref|YP_827860.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228866|gb|ABJ87575.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1134 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R+ L D + V S EA P ++ D M G+ F Sbjct: 636 RILLADDNPDMREYVERLLRDR-YDVTAVASGEEALHAAISNP-PGLILSDVMMPGLDGF 693 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ P + + + E + G AGA+ +L+KPF L + M Sbjct: 694 GLLKELRERPETRTIPLILVSARAGEESRVEGLGAGADDYLIKPFTARELLARVGAHLSM 753 Query: 121 QKSKDENQ 128 + + + + Sbjct: 754 SRRRRDAE 761 >gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] Length = 229 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R V A EA + +E + +++D + + Sbjct: 3 KKVLVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKA-REGDYDLILLDVMLPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R + ++V + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVC-RAVREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRV 120 Query: 122 KSKDENQ 128 +S++ + Sbjct: 121 RSREAEE 127 >gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601] gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601] Length = 237 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + N GF V+ A EA + E E+ P+ +++D + G Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVE-EVQPDLILLDIMLPGRDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 VEVCREVRKK---YDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 119 Query: 120 MQ 121 Sbjct: 120 RH 121 >gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 229 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L+V+ + + ++ G+ V A +A E E P+ +++D + Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAE-ETTPDLVMVDWMLPKV 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R +V + L + + G GA+ +++KPF+ L +R + Sbjct: 60 SGIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAV 119 Query: 118 PQMQK 122 + + Sbjct: 120 LRRIR 124 >gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 236 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + + GF + A +++ P+ +++D + G+ Sbjct: 3 ILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQEQP-PDLIILDLMIPGLDGLE 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A +RQ P D ++ L + + + G GA+ +++KPF+ L +R L + Sbjct: 62 VCARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRALLRRS 121 Query: 122 -KSKDENQ 128 + +NQ Sbjct: 122 LRQGGQNQ 129 >gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+++ +R + + + + EA + EA + K+ P+ +++D + + Sbjct: 1 MEKILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQLVKQ--PDLVILDLMLPDID 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + + + I G GA+ ++ KPFN + ++ Sbjct: 59 GLSICKSIRKKYYY---PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQL 115 Query: 119 QMQKSKDEN 127 + K DEN Sbjct: 116 RRYKQYDEN 124 >gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 233 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E P+ L++D + + Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAES-PDILILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-RTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKDENQ 128 + E+Q Sbjct: 119 TELTVESQ 126 >gi|146342589|ref|YP_001207637.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146195395|emb|CAL79420.1| putative sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 1231 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL D + +R R L + V A E + P+ ++ D M + Sbjct: 642 RILLADDNADMRDYVRRLLVTR-YDVEAVADGKAALEAIARAK-PDLVLSDVMMPQLDGM 699 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A VR + V V L E + G +AGA+ +L+KPF+ L + +M Sbjct: 700 QLLARVRADAQFSTVPVILLSARAGEESRVEGMQAGADDYLIKPFSARELLARVEAHLKM 759 Query: 121 QKSKDEN-QFLDA 132 + + E + L A Sbjct: 760 ARLRAEATERLRA 772 >gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 230 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ G+ V A+ A + KE N +++D + + Sbjct: 1 MTKILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKA-KEQQFNAILLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + D + G GA+ ++ KPF+ + ++ + + Sbjct: 60 GMTVLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRR 119 Query: 121 QK 122 + Sbjct: 120 SQ 121 >gi|113477434|ref|YP_723495.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110168482|gb|ABG53022.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 351 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M + +L+VD + R + G M+ A+ +A E + + +++D M Sbjct: 1 MKNDRGNVLVVDDNQFNRDLLARRVKRQGHMISSASDGFQALEMV-RNHSFDLVLLDIMM 59 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + + ++ P + V + D + ++ GA +L KPFN L+ + Sbjct: 60 PQMNGYQVLETLKADPALRHIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPILLKARI 119 Query: 115 RELPQMQKSKDENQ 128 + ++ +D+ Q Sbjct: 120 NACLEKKRLRDQEQ 133 >gi|186685939|ref|YP_001869135.1| response regulator receiver modulated PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] gi|186468391|gb|ACC84192.1| response regulator receiver modulated PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] Length = 294 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + ++ + G+ + + A + + P+ +++D M + Sbjct: 36 NILVVDDTPDNLRLLSAMLTQLGYEIRRVINGPTALKTAQAAP-PDLILLDIMMPEMNGY 94 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E H++ + D+ V ++ + + G ++ KPF+ E + + + Sbjct: 95 EVCQHLKASEITRDIPVIFISALDEVFDKVKAFAVGGVDYITKPFSEEEVFARVENNLTI 154 Query: 121 QKSKDEN 127 ++ + + Sbjct: 155 RRLQKQL 161 >gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W] gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W] gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ L GF AT +A E ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCRELRQRSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 225 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D +R++ + + GF VFEA + +A + +E + V+D M + Sbjct: 1 MNKVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEK-IDLCVLDIMMPQMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR+ D+ + L + + + + G GA+ +L KPF + L ++ L Sbjct: 60 GYEFCKQVRR--YYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALL 117 Query: 119 QMQK 122 + K Sbjct: 118 RRYK 121 >gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989] gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989] Length = 233 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + +R++ R L G+ V EA E + + + +V+D M + Sbjct: 3 TRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDSS--IDLIVLDIMMPNMNG 60 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 + ++ ++V + +L + G +GA+ +L KPF+ L ++ L + Sbjct: 61 YQTCLKLRE-TSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRY 119 Query: 121 --QKSKDENQFLD 131 K K E LD Sbjct: 120 QVYKGKKEETLLD 132 >gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] Length = 226 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + + GF V EA EA + + +++D M + + Sbjct: 5 KILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVFFAQKDIALVLLDVMMPKMDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + V V L + + G G + ++ KPF+ + L + + + Sbjct: 65 -EVLRTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121 >gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 229 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD VR + + ++ GF V A EA +E P+ +++D M + Sbjct: 4 KTILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGRE-QPDLILLDVMMPKLDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + V L + + G GA+ ++ KPF L +R + + Sbjct: 63 F-QFMQTFRKRHNTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRR 120 >gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 236 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F EA E PN +++D + G+ Sbjct: 5 QRILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFP-EFKPNLVLLDLMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YSVCREMRAQSP---VPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQKS 123 + Sbjct: 121 RYQQ 124 >gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + F GF V A EA + +++D + + F Sbjct: 4 RILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASD-FDLVILDIMLPKLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ + V + L + D + G GA+ ++ KPF+ L +R + + + Sbjct: 63 TVC-REIRRFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTR 121 Query: 123 SKDENQFLDA 132 + ++ A Sbjct: 122 VAESSRSRTA 131 >gi|209528443|ref|ZP_03276873.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328] gi|209491122|gb|EDZ91547.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328] Length = 352 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + I R + G+ V A++ EA + + + +++D M + Sbjct: 8 VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIM-RSTALDLVLLDIMMPQMNGYQ 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ + V + D + ++ GA +L KPFN LR + + + Sbjct: 67 VLESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACLEKK 126 Query: 122 KSKDENQ 128 + +D+ Q Sbjct: 127 RLRDQEQ 133 >gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E KE + +++D + + Sbjct: 3 RKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKA-KENKYDIILLDLMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 LEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDENQ 128 +S+ E + Sbjct: 119 RARSEHEEK 127 >gi|255320055|ref|ZP_05361251.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SK82] gi|262380561|ref|ZP_06073715.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255302923|gb|EET82144.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SK82] gi|262298007|gb|EEY85922.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 236 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60 +L+VD +R++ + GF +A +A + + P +++D M G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQ-RPALILLDWMMPGGISGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ +++ V L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 121 QKSKDENQFLDA 132 + + +DA Sbjct: 125 ANALSGEKTIDA 136 >gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] Length = 230 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R G+ V A EA E K+ P+ ++D M + Sbjct: 2 KILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKD-RPDLAILDVMMPKLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D+ V L + +AG AGA+ +L KPF E L +R L + Sbjct: 61 DVCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRSA 120 Query: 123 SK 124 + Sbjct: 121 LE 122 >gi|182415603|ref|YP_001820669.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177842817|gb|ACB77069.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 376 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD I ++ + G V A + EA + K P+ +++D M + Sbjct: 5 SILVVDDQPINVQLLKRKLEREGIQVTAAYNGLEALDLVRKTK-PDLILLDVMMPDMDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++ L + + ++ E I G GA ++ KP + + ++ + Sbjct: 64 EVCQRLQADELTRSIPIIFITARTSKEGKIEGLNVGAVDYITKPIDLDETLARVQTQLRF 123 Query: 120 ---MQKSKDENQFL 130 ++ D + L Sbjct: 124 VTINREMLDLQRRL 137 >gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 266 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ V +V GF+V A A + E+ P+ +V+D + G+ Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAER-FHPDLIVLDRMLPGIDG 98 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R DV + L ++ IAG AGA+ ++ KPF+ L ++ + + Sbjct: 99 SEVCRRIRSRG---DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILR 155 Query: 120 M 120 Sbjct: 156 R 156 >gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] Length = 266 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ GF V A + RE + +V+D M G Sbjct: 33 KRLLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGH-FDLIVLDIMMPGDDG 91 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +++ +++ + L D I G GA+ ++ KPFN L ++ + + Sbjct: 92 FTLC-KEVRTKSNIPIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRRY 150 Query: 122 K 122 + Sbjct: 151 E 151 >gi|332708948|ref|ZP_08428919.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332352490|gb|EGJ32059.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 373 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 4/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L VD S + + L + G+ + A + A E E P +++D M + F Sbjct: 15 ILAVDDSPDNLFLLQTLLEEEGYEITLAENGRVALERIESSP-PELVLLDVMMPEMDGFE 73 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P + + + ++ G GA+ F+ KP + L +R L +++ Sbjct: 74 VTKRIRSNPKLPFIPILLITAYDHPS-VVKGLDMGADDFIRKPVEVDELLARVRSLLRLK 132 Query: 122 KSKDENQFLD 131 S DE + Sbjct: 133 HSVDERDEIA 142 >gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 248 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V KV G+ V+ AT+ EA E ++ P+ +V+D + + F Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDS-PDLIVLDVMLPKMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 64 AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120 >gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + GF V EA EA + ++ +++D M + + Sbjct: 5 KILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V + L + + + G + G + ++ KPF+ + L + + + Sbjct: 65 -EVLKTIRKYSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRR 121 >gi|146306182|ref|YP_001186647.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145574383|gb|ABP83915.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 243 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V E E + +++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFAVRAVADG-EGLRAALVEEPADLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V V L D + G GA+ +L KPF+ L ++ L + Sbjct: 65 FSLCRWIREHQRFAAVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLR 124 Query: 120 MQKSKDE 126 E Sbjct: 125 RASFAKE 131 >gi|260172987|ref|ZP_05759399.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] gi|315921265|ref|ZP_07917505.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695140|gb|EFS31975.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1342 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + R R+ + V A + EA E ++E LP+ ++ D M + Sbjct: 1095 LLIVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEE-LPDLVISDVMMPQMDGNE 1152 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + V L + E + G + GA+ ++ KPFN L +R+L ++ Sbjct: 1153 LCRLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIELS 1212 Query: 122 KSKD 125 + Sbjct: 1213 RYHR 1216 >gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL D + + + F+ G+ V A + EA E + +P+ +++D M + Sbjct: 1 MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAAD-MPDIVILDVMMPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++Q+ + V V L + D I G GA+ +L KPFN L ++ + + Sbjct: 60 GF-ETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR 118 Query: 121 QKSKDEN 127 + E+ Sbjct: 119 ASQERED 125 >gi|107023338|ref|YP_621665.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690421|ref|YP_836044.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170733741|ref|YP_001765688.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206560945|ref|YP_002231710.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|105893527|gb|ABF76692.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116648510|gb|ABK09151.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169816983|gb|ACA91566.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|198036987|emb|CAR52908.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 241 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912] Length = 233 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAEN-PDVIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-RTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKDENQF 129 + + Q Sbjct: 119 SEFAADPQL 127 >gi|219847541|ref|YP_002461974.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] gi|219541800|gb|ACL23538.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] Length = 313 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+ D +R + + GF V A A +E LP+ +++D + G Sbjct: 9 TVLIADDDPNLRFLLSDMLQRAGFDVLVAEDG-SALLQIAQEQLPDIILVDLMLPGVDGY 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R + + + + ++ G GA+ ++ KPFN L +R L + Sbjct: 68 EAIRQLRNDTRTAHLPIIIVTARTNPADVVIGFDTGADDYVTKPFNEAELIARIRSLLRR 127 Query: 121 QKSK 124 + Sbjct: 128 TTQR 131 >gi|189351171|ref|YP_001946799.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|189335193|dbj|BAG44263.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 241 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 236 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + K+ + F A A + + + P+ +++D + Sbjct: 1 MK-ILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQE-PDLIILDLMLPKLD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ D ++ L + + + G GA+ +L+KPF+ L +R L Sbjct: 59 GLEVCTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 238 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +R++ + G+ + EA A + +++D + G+ Sbjct: 6 NRILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDY-GLILLDVMLPGIDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ+ V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 65 VEVCNRLRQV---KATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMR 121 Query: 120 MQKSKD 125 + Sbjct: 122 RASATA 127 >gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str. Twist] gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str. Twist] Length = 251 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + G+ V A + A E P+ +++D + + Sbjct: 28 TKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEE-PDLIIMDVMLPDMSG 86 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F A R G V +L E I G G + ++ KPF+ + + + + + Sbjct: 87 FAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRT 146 Query: 122 KSKD 125 K D Sbjct: 147 KIDD 150 >gi|330466987|ref|YP_004404730.1| response regulator receiver modulated diguanylate cyclase [Verrucosispora maris AB-18-032] gi|328809958|gb|AEB44130.1| response regulator receiver modulated diguanylate cyclase [Verrucosispora maris AB-18-032] Length = 326 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + + GF V A+ EA E E++ P+ V+D M LE Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGFDVMLASDGQEALELIERQ-RPDLAVVDLMMPRIDGLE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P+ + V L + + + G AGA+ +L+KPF+ L + + Sbjct: 70 LTRRLRADPMTAVLPVIMLTAKGMTQDKVNGLSAGADDYLVKPFDTLELLARVTSTLRRN 129 Query: 122 KSKDE 126 K E Sbjct: 130 KEFRE 134 >gi|310820597|ref|YP_003952955.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309393669|gb|ADO71128.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 971 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R + + V EA + E R+ + P+ +V D M + Sbjct: 594 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQS-APDLIVSDVMMPVMSGL 651 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R+ D+ V L + + + G GAN ++ KPF+ L + ++ Sbjct: 652 QMLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLRL 711 Query: 121 QKS---KDENQFLDA 132 + + EN+ L A Sbjct: 712 RDAAVRAAENERLAA 726 >gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] Length = 237 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T++ + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|222081138|ref|YP_002540501.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725817|gb|ACM28906.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 241 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 9/134 (6%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M + +VD +R + G+ V A S A + + +V+D M Sbjct: 1 MQKAAHIAVVDDHADIRNLVGQYLEQQGYRVSVADSGV-ALRRILERSAVDLVVLDVMMP 59 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G H+R DV + +L + I G GA+ +L+KPFN L +R Sbjct: 60 GEDGLSVCRHLRA---TMDVPIIFLTAMTEDTDRIIGLELGADDYLVKPFNPRELLARIR 116 Query: 116 ELPQMQKSKDENQF 129 + + S + Q Sbjct: 117 AVLRRANSVPQQQR 130 >gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062] gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062] Length = 233 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R+V + A + EA +++ + + +++D M + Sbjct: 1 MQNILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPV-DLIILDIGMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ V + +L + I G G + ++ KPF+ L + + Sbjct: 60 GFEVCREIRKHSE---VPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAIL 116 Query: 119 QM 120 + Sbjct: 117 KR 118 >gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] Length = 232 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916] Length = 280 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR+V G+ V A +A E E P+ +V+D + + F Sbjct: 36 TILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSES-PDLVVLDVMLPKMDGF 94 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 95 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 151 >gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + R GF V A +E + +++D + G+ F Sbjct: 9 RILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAA-RERPADLVILDIMLPGMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G+DV + L + + G +GA+ +L+KPF E L +R L + Sbjct: 68 EVCRRLRA---GSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRR 124 Query: 121 QKSKDE 126 ++ E Sbjct: 125 HVARTE 130 >gi|323525232|ref|YP_004227385.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382234|gb|ADX54325.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 241 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 3 TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + G D+ V L D I G GA+ +L KPFN L ++ + + + Sbjct: 62 LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121 Query: 122 K 122 + Sbjct: 122 R 122 >gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V KV G+ V+ AT+ EA E ++ P+ +V+D + + F Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDS-PDLIVLDVMLPKMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 64 AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120 >gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ + G+ V EA + KE P+ +V+D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLDAEGYEVETVARGDEA-DTWLKERTPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKDENQFLD 131 + L Sbjct: 123 ASPERLATILS 133 >gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 217 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R++ + G+ V EA +A E ++ + +++D + + Sbjct: 1 MKKILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGY-DLVILDIMLPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V V L + I G A+ ++ KPFN L ++ + Sbjct: 60 GWSVCREIRRESM---VPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIF 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|254505752|ref|ZP_05117898.1| two-component system response regulator [Vibrio parahaemolyticus 16] gi|219551405|gb|EED28384.1| two-component system response regulator [Vibrio parahaemolyticus 16] Length = 235 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ GF V A + E + +K P+ +++D M G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVIGAGNGREMWQQLKKHT-PDLIILDIMMPGDDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + + + L + +AG GA+ ++ K F+ L ++ + + Sbjct: 63 FTLCQKLRRD---SQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119 Query: 120 MQKSKDENQF 129 + + Q Sbjct: 120 RSQLNPQTQL 129 >gi|172036101|ref|YP_001802602.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697555|gb|ACB50536.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1349 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 13/142 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-------ELLPNYLVIDES 55 +L+V+ + +R + L + + + V EA + + ++ D Sbjct: 960 KILIVEDNGDMRDYLKKLLDPY-YEVETVNDGLEALTLIRNVSDHNNNGGMYDLVLTDIM 1018 Query: 56 ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 M E + +R P + + + E + G AGA+ +L KPF+ L Sbjct: 1019 MPRLDGFELLRSLRNKPETQKIPIIMISARTGEESQVEGLEAGADDYLGKPFSARQLLTR 1078 Query: 114 MRELP---QMQKSKDENQFLDA 132 + +M+K + N+ L+A Sbjct: 1079 VESHLKLTRMRKVQALNETLEA 1100 >gi|292486595|ref|YP_003529463.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Erwinia amylovora CFBP1430] gi|292897832|ref|YP_003537201.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291197680|emb|CBJ44775.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291552010|emb|CBA19047.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Erwinia amylovora CFBP1430] gi|312170655|emb|CBX78918.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Erwinia amylovora ATCC BAA-2158] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDST--VDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GLDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQF 129 + ++ Sbjct: 116 RRSNWSEQQHL 126 >gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] Length = 224 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ R GF V EA EA + KE + +V+D M + Sbjct: 1 MVKILVVDDEQRIREMIRKYAEYEGFAVDEACDGLEAVDKAMKENY-DLIVMDIMMPNLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +V V L + I G G + +++KPF+ + L + + Sbjct: 60 GFSACREIRK--THENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAIL 117 Query: 119 QMQKSKDENQFLD 131 + ++ + + Sbjct: 118 KRTSQSEKKELIK 130 >gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD ++ K + V A EA E KE + +++D + G Sbjct: 1 MRKVLVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKA-KENQYDIILLDVMLPGLT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ + V + L + + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GFEVCQAIRE---FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIL 116 Query: 119 QMQKSKDENQFLDA 132 + D + A Sbjct: 117 RRSAHHDVKEEESA 130 >gi|186474905|ref|YP_001856375.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184191364|gb|ACC69329.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 1631 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LL+VD + +R R + G V+ A EA L P +V D M Sbjct: 644 KLLVVDDNADLRDYMRRILTAAGHQVYVAADGMEALAAARA-LQPELVVSDVMMPKLDGF 702 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R ++ V L E + G +GA+ +L+KPF L + Q+ Sbjct: 703 GLLRALRADDGLREMPVLLLSARAGEEAKVDGLESGADDYLIKPFAARELLARVAGNLQL 762 Query: 121 QKSKDE--NQFLDA 132 + + E N+ + Sbjct: 763 ARLRRETGNRLREE 776 Score = 90.6 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 7/126 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 ++L+V+ VR + + G+ V +A A E + + L D M G L Sbjct: 1361 TILVVEDDEDVRTTVVEMLSALGYRVLKAKDAQSALAIVESGVPIDLLFTDVVMPGSLRS 1420 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118 E R+ + V + D + AG G L KP++RE L + Sbjct: 1421 TELARKARERQ--PGIAVLFTSGYTDNAIVHAGRLDEGV-ELLSKPYSREALARKIEHAL 1477 Query: 119 QMQKSK 124 +Q ++ Sbjct: 1478 HVQYAR 1483 Score = 72.9 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L V+ +VR L FG V EA+ +A + E + L+ D + G Sbjct: 1516 RILFVEDDELVRVSTAELLRTFGVEVAEASGAVQALDLL-HEKSFDVLLTDIGLAGASGI 1574 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA-GANSFLLKPFNRETLRFAMRELPQ 119 + + + V ++ R GA+ L KP++ L A+R + Sbjct: 1575 DLAIDATGRESRLRVIFVTGSDAALSPEQQLRLPGASQ-LRKPYDPLDLVNALRGCVE 1631 >gi|90580895|ref|ZP_01236697.1| transcriptional regulatory protein CpxR [Vibrio angustum S14] gi|90437966|gb|EAS63155.1| transcriptional regulatory protein CpxR [Vibrio angustum S14] Length = 230 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + + GF V EA + + E + + +++D M + Sbjct: 1 MAKILLVDDDIELTALLKDILELEGFDVIEANNGQQGLEKV--DNSIDLILLDVMMPVMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V L + D + G GA+ +L KPF+ L +R + + Sbjct: 59 G-TEMLRRLREAHSTPVMMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARIRAVLRR 117 Query: 121 QKSKDE 126 ++ +E Sbjct: 118 TQASNE 123 >gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + F V EA + EA + +E +++D M + Sbjct: 13 KILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDIFYEEKDIALIILDVMMPKMDGW 72 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L D + G G + ++ KPF+ + L + + + Sbjct: 73 EVCREIRKNSK---VPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 129 Query: 121 QKSKDENQFLDA 132 + + A Sbjct: 130 TGQNNPEDVISA 141 >gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 242 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFK-FVLLDIMMPKMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 134 RRTNEHKQIQ 143 >gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 230 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + R G+ V A EA + L P+ +++D + V F Sbjct: 5 ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRA-LQPDLILLDVMLPEVDGF- 62 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ-- 121 +R + + V V L + D + G GA+ ++ KPF+ L ++ + Sbjct: 63 DVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122 Query: 122 --KSKDENQF 129 + EN+ Sbjct: 123 VLREHRENER 132 >gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1846 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +LLVD + +RK + ++ F V A E +P+ ++ D M + Sbjct: 1477 VLLVDDNADMRKYLTRILSEH-FQVEAVADGKTALAVAI-EQVPDLILSDVMMPRLDGVE 1534 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R P +V L E +I G AGA+ +L+KPF+ + L + QM Sbjct: 1535 LLQALRSDPRTKEVPFILLSARAGEESIIKGLEAGADDYLIKPFSAQELVSRVNAHLQMA 1594 Query: 122 KSKDE 126 K + E Sbjct: 1595 KLRGE 1599 >gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + E + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A A + E +++V+D + + Sbjct: 3 QHILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNES-FDFIVLDLMLPEMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + + L + D + G GA+ +L KPF+ + +R + + Sbjct: 62 LEVCKQLRQNKIM--TPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILR 119 Query: 120 MQKSKDENQ 128 K+ ++ Sbjct: 120 RTKAAKRSE 128 >gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 236 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++LLV+ + + +V G+ V A A + +E P+ +V+D + Sbjct: 1 MTTILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLARE-QPDLVVLDWMLPQVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + +RQ V L + + G GA+ +L KPF+ L +R L Sbjct: 60 GLEVLRRLRQESP---TPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALL 116 Query: 119 QMQKSKDENQFLDA 132 + Q L+A Sbjct: 117 RRTDLVR--QMLEA 128 >gi|170703741|ref|ZP_02894459.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170131352|gb|EDS99961.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 241 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ + + V +A EA + K + +++D M L Sbjct: 2 RVLVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKKNGL 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ G + V +L + I G AGA+ ++ KPFN + ++ L + Sbjct: 62 EVLEEIRKQ--GLNFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRR 119 Query: 121 QKSKDE 126 Q+ ++ Sbjct: 120 QQLLNQ 125 >gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ R + V EA A + +E +++D M + Sbjct: 5 KILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDIFYQEKNIALIILDVMMPKMNGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + D E + G G + ++ KPF+ + L + + + Sbjct: 65 EVCREIRE---TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRR 121 Query: 121 Q-KSKDENQFLD 131 K+ +E + L Sbjct: 122 IGKAPEEGKLLS 133 >gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] Length = 234 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R+ GF V A EA + E P+ +++D + G +E Sbjct: 6 ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEA-DLRLHETTPDLVLLDWMVPGLSGIE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L + + G GA+ +++KPF+ L +R L + Sbjct: 65 LCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRA 124 Query: 122 K 122 K Sbjct: 125 K 125 >gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] Length = 234 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + + R+ GF V EA + +E +P+ +++D + G Sbjct: 3 TRILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEA-DIRLREQIPDLVLLDWMVPGLSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + + L + + G GA+ +++KPF+ L +R L + Sbjct: 62 IELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLR 121 Query: 120 MQK 122 K Sbjct: 122 RAK 124 >gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916] Length = 248 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD R++ + G+ V A EA E C + + P+ +V+D M Sbjct: 10 TILVVDDEASSRRILETRLSMIGYNVITACDGNEALE-CFRNVEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + Sbjct: 126 VDKEQ 130 >gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + G+ V A A E E E PN +++D + G Sbjct: 3 QKILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEK-PNLILLDIMLPGKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + VR+ ++ V L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 NEVLREVRK---TQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 118 Query: 120 MQKSKDE 126 ++ DE Sbjct: 119 REQVPDE 125 >gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola granulosus HTCC2516] gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola granulosus HTCC2516] Length = 230 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ R+V + GF A +A +E P+ +V+D + +E Sbjct: 9 VLIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQAL-MLVQEDRPDVMVLDWMLPNLSGIE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P DV + L + + G GA+ +++KP++ L +R + Sbjct: 68 VCRQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 127 Query: 122 KSKDENQFL 130 + Q L Sbjct: 128 RPSTVGQVL 136 >gi|113476774|ref|YP_722835.1| response regulator receiver protein [Trichodesmium erythraeum IMS101] gi|110167822|gb|ABG52362.1| response regulator receiver protein [Trichodesmium erythraeum IMS101] Length = 121 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ S R++ L + G V A EA K P+ +V+D M + Sbjct: 1 MSKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRL-KNTKPDIVVLDIVMPKMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P + V + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRIKSDPQTKHIPVVMCSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 290 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD V ++ G+ V A EA E +E P+ LV+D + + F Sbjct: 27 TILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHRE-QPDLLVLDVMLPKMDGF 85 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ ++ KPF+ + L + + + Sbjct: 86 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142 >gi|332667187|ref|YP_004449975.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332336001|gb|AEE53102.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1381 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + +R R + V EA + E E ++L+P+ ++ D M E Sbjct: 1122 VLVVEDNADIRTYIRRSL-YPDYEVIEAENGQEGLEK-TRKLIPDIIISDVIMPELDGFE 1179 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+Q + V L + G GA+ ++ KPF+ + L+ +R L + Sbjct: 1180 LCRTVKQEEATAHIPVILLSARSSQMYQVEGYDTGADDYIAKPFSIDLLQARIRNLLNNR 1239 Query: 122 KSKDE 126 + Sbjct: 1240 ERIQR 1244 >gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family [Megamonas hypermegale ART12/1] Length = 230 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + + G+ A EA + ++E P+ +++D M Sbjct: 1 MK-VLIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRE-RPDIILLDVMMPKID 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ ++V + + + + I G GA+ +++KPF+ + ++ + Sbjct: 59 GFEVCRVIRK---TSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAIL 115 Query: 119 QMQKSKDEN 127 + + K EN Sbjct: 116 RRIQPKTEN 124 >gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 230 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+ + H +R GF VFEAT+ EA ++E + +++D M + Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREP-FDVVLLDVMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A L +V + L E I G GA+ ++ KPF+ L ++ L + Sbjct: 60 GFEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRR 119 Query: 121 QK--SKDENQFLDA 132 + + +++ L + Sbjct: 120 VEKVKRKDSKRLKS 133 >gi|223934982|ref|ZP_03626901.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896435|gb|EEF62877.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 213 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R+ GF V A E P+ ++ D M G+ Sbjct: 1 MKKILVIEDQPEMRRSLETTLEMEGFEVLLAEDGRMGLELALAA-RPDLILCDVMMPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + +L D + G GA+ +L KP + L A+ Sbjct: 60 GHGLLQVLRADNRTAHLPFIFLTARADKQDARTGMNLGADDYLTKPVAKSDLLAAISS-- 117 Query: 119 QMQKSKDENQFLD 131 ++Q+++ + + LD Sbjct: 118 RLQRAEVQKRRLD 130 >gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 237 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A E ++LLP+ ++ D M Sbjct: 12 RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFGKA-QQLLPDVVITDVMMPRLDGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V +L + G AG + ++ KPF+ + L +R + Q Sbjct: 71 GLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 130 Query: 121 QK--SKDENQFLDA 132 Q+ ++ +F DA Sbjct: 131 QQRLLQEAARFADA 144 >gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A A + E+E + +++D + V Sbjct: 1 MSRILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQY-DAVLLDLMLPEVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + V + + D I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GMSVLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRR 119 Query: 121 QKSKDENQ 128 + N+ Sbjct: 120 YHEQSTNR 127 >gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] Length = 236 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR51-B] gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR51-B] Length = 236 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + +R + R F E ++ +A E P+ +++D + G + Sbjct: 5 KILVVDDEYAIRDMLRMALEIADFDCIETDNISDAHSLVVDE-RPDLVLLDWMLPGGSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +++ + V L + + +I G GA+ +L KPF L ++ L + Sbjct: 64 ELLRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKALLRR 123 Query: 121 QKSKDENQFLD 131 + ++NQ L Sbjct: 124 SQGMEDNQRLA 134 >gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] Length = 235 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD ++ K R G V A EA E +K + +++D + Sbjct: 1 MARVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEY-DIVLLDVMLPKYD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +D+ + L + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GYEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAII 116 Query: 119 QMQKSKDENQFLDA 132 + + +A Sbjct: 117 RRSGKSKRQKREEA 130 >gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 224 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD +R V + G+ V EA +A E + + + +++D M + Sbjct: 1 MKRLLIVDDEANIRLVVKEYAEFEGYEVAEAEDGMQAVELVKSQD-FDVIIMDIMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +++ ++ V L + + G G + +++KPF+ + L ++ + + Sbjct: 60 GFSAC-KEIKKYKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIKR 118 Query: 121 QK 122 + Sbjct: 119 SE 120 >gi|218708873|ref|YP_002416494.1| DNA-binding response regulator [Vibrio splendidus LGP32] gi|218321892|emb|CAV17879.1| DNA-binding response regulator [Vibrio splendidus LGP32] Length = 242 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ GF V E + + P+ +++D + G Sbjct: 5 TRILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R ++V + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 65 FTLCQRVRKQ-SNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRV 123 Query: 122 K 122 + Sbjct: 124 Q 124 >gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+VD + ++ + G+ FEA S A E K + +++D M Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEIL-KHNKVDLVILDIMMSDKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++ V L + + I G GA+ ++ KPF+ + L ++ L Sbjct: 60 GYEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119 Query: 119 QMQKSKD 125 + +S Sbjct: 120 RRVESLR 126 >gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + ++ + G+ E + + + +++D + G+ Sbjct: 3 QKILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTY-DLIILDIMLPGMNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + G+ V L E+++ G + GA+ ++ KPF L + + + Sbjct: 62 FEVLSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRRT 121 Query: 122 KSKD 125 +K+ Sbjct: 122 GNKE 125 >gi|312130834|ref|YP_003998174.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907380|gb|ADQ17821.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1291 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LLLV+ + +R++ + + + + + + EAT E +E+ P+ ++ D M + Sbjct: 1046 LLLVEDNREIRQMIKEILSPY-YQIREATDGMEGWNMA-QEISPDLIISDIMMPQMDGIE 1103 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + + V L G GA++++ KPF+ L ++ L + Sbjct: 1104 LCGKLKTDPKTSHIPVILLTARATVAYKQEGYETGADAYITKPFSPNLLLVRIKNLLHQR 1163 Query: 122 K 122 K Sbjct: 1164 K 1164 >gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] Length = 236 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V + + E +++++D + G+ Sbjct: 1 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQY-DFIILDVMLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 D + L + + I G GA+ +L KPF+ + M+ + + Sbjct: 60 GLEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QK 122 K Sbjct: 120 LK 121 >gi|259906787|ref|YP_002647143.1| DNA-binding transcriptional regulator CpxR [Erwinia pyrifoliae Ep1/96] gi|224962409|emb|CAX53864.1| Two-component response regulator [Erwinia pyrifoliae Ep1/96] gi|283476573|emb|CAY72401.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Erwinia pyrifoliae DSM 12163] gi|310765997|gb|ADP10947.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A + + L++D M Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDST--VDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQF 129 + ++ Sbjct: 116 RRSNWSEQQHL 126 >gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 261 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + GF+V A E +E P+++++D + Sbjct: 26 KRVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEE-RPDFIILDLMLPKLDG 84 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 85 IEVCKQLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 142 Query: 120 MQKSKDENQFLD 131 + + + Sbjct: 143 RTVIHGQEEKQE 154 >gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 212 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A + EA + E++ +P+ ++ D M + Sbjct: 10 KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALDILEQQQIPDMIICDVMMPEMDG 69 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ +R + + +L + + I G R GA+ +++KPF E L + Sbjct: 70 YAFVEKLRDDARTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129 Query: 120 M 120 Sbjct: 130 R 130 >gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +++D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVILDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|86146088|ref|ZP_01064414.1| Response regulator [Vibrio sp. MED222] gi|85836035|gb|EAQ54167.1| Response regulator [Vibrio sp. MED222] Length = 242 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ GF V E + + P+ +++D + G Sbjct: 5 TRILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R ++V + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 65 FTLCQRVRKQ-SNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRV 123 Query: 122 K 122 + Sbjct: 124 Q 124 >gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120] gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120] Length = 225 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEA-ERIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF + L F +R L + Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +++D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVILDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|254412249|ref|ZP_05026024.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181215|gb|EDX76204.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 414 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD V+ V ++L V A + EA K P+ ++ D M Sbjct: 1 MAKILVVDDDLTVQLVLKNLLTSQNHDVAIANNGEEALRQV-KLFHPDLIICDWIMPRLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE V+ P F+ L M + G AGA+ F+ KP + E L +R Sbjct: 60 GLEVCRQVKADPELATTFIILLTMRDQITDRVQGLDAGADEFISKPIDMEELLARVRAGL 119 Query: 119 QMQKSKDEN 127 + ++ + Sbjct: 120 RSRQLTQQL 128 >gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ D +R++ + G+ V A EA + K+ P+ +V+D M Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLF-KDYEPDLVVLDVMMPKLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 69 GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 Query: 121 QKSKD 125 + Sbjct: 126 IDKEQ 130 >gi|115380175|ref|ZP_01467204.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|115362817|gb|EAU62023.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] Length = 946 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R + + V EA + E R+ + P+ +V D M + Sbjct: 569 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQS-APDLIVSDVMMPVMSGL 626 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R+ D+ V L + + + G GAN ++ KPF+ L + ++ Sbjct: 627 QMLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLRL 686 Query: 121 QKS---KDENQFLDA 132 + + EN+ L A Sbjct: 687 RDAAVRAAENERLAA 701 >gi|77460594|ref|YP_350101.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384597|gb|ABA76110.1| putative two-component response regulator [Pseudomonas fluorescens Pf0-1] Length = 243 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ GF V E + +++D + Sbjct: 6 KSILLVDDDQEIRELLETYLTRAGFQVRATADGA-GFRQALNEAPSDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWVRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus ATCC 53653] gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + E + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ +R V R GF V A + E E +E P+ +++D ++ G+ Sbjct: 4 TILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRE-RPDLVILDLNLPGMDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +DVF+ L + +AG R GA+ +++KPF+ L + + + ++ Sbjct: 63 EVAARLRQE-SDVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRRRR 121 Query: 123 SKD 125 S Sbjct: 122 SAS 124 >gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD VR+ G+ V A EA P+ +++D M + Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHL-SGTHPDAVIMDVMMPRLDGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A G DV + L + + G AGA+ +++KPF + L +R L + + Sbjct: 64 ATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123 Query: 124 K 124 + Sbjct: 124 E 124 >gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R+ + D F V A++ E + EK LP+ ++ D M Sbjct: 7 KILLVDDEPGLREAVQAYLEDSHFNVDVASNANEGWDILEKN-LPDLVITDVMMPQVDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F+ +R+ P + V +L + I G +AG +++L KPF+ E L + L + Sbjct: 66 QFLQKLREEPRFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVNNLLER 125 Query: 121 QKSKD 125 + S Sbjct: 126 RASAQ 130 >gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA E E P+ +++D + + Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAEN-PDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-RTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QKSKDENQF 129 + + Q Sbjct: 119 SEFAADPQL 127 >gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 261 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D VR++ R F + AT EA E EKE P+ +++D M + Sbjct: 33 MK-VLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKE-QPDVVILDVMMPQLD 90 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A R++ D + L + + + G GA+ ++ KPF+ + +R + + Sbjct: 91 GFEAC-REIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 121 QKSKDENQFLDAI 133 + K + + A+ Sbjct: 150 LQPKPKVEDEAAL 162 >gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA + E + +++D + + Sbjct: 3 KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMA-TENHYDMILLDIMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H+R+ +D+ + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQHIRE---FSDMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 234 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + + R+ GF V EA + +E +P+ +++D + G Sbjct: 3 TRILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEA-DIRLREQVPDLVLLDWMVPGLSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + V L + + G GA+ +++KPF+ L +R L + Sbjct: 62 IELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLR 121 Query: 120 MQK 122 K Sbjct: 122 RAK 124 >gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ + GF A A + + + +V+D + + Sbjct: 3 QRILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLA-ADDSFDLIVLDLMLPEMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ+ + + L + D + G GA+ +L KPF+ + +R + + Sbjct: 62 LEVCKSLRQLKV--STPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILR 119 Query: 120 MQKSKDENQ 128 +++ Sbjct: 120 RSAVPKQDK 128 >gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator [uncultured prokaryote AT5] Length = 234 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M ++L+V+ + + R+ G+ V EA + KE P+ +++D + G Sbjct: 2 MKANILIVEDEEALVLLLRYNLEAEGYGVETVARGDEA-DLLLKERSPDLVILDWMLPGL 60 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R + + L + + + G GA+ +++KPF+ L +R L Sbjct: 61 SGIELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRAL 120 Query: 118 PQM 120 + Sbjct: 121 LRR 123 >gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8] gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98] gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8] gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98] gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] Length = 236 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V + + E +++++D + G+ Sbjct: 1 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQY-DFIILDVMLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 D + L + + I G GA+ +L KPF+ + M+ + + Sbjct: 60 GLEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QK 122 K Sbjct: 120 LK 121 >gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L] gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 225 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + ++ G+ V + EA ++ + +V+D + G+ Sbjct: 4 QHILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARV-RDGAFDCVVLDVMLPGMSG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F A R + +DV + +L + I G G + ++ KPF+ + ++ L + Sbjct: 63 FEAC-RAIRAFSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRRY 121 Query: 122 KSKDEN 127 + E Sbjct: 122 RPSAEQ 127 >gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA + + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQP-IDLVVLDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|91976145|ref|YP_568804.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91682601|gb|ABE38903.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1427 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R L + + V A E K+ P+ ++ D M + Sbjct: 650 RVLLADDNPDMRDYVARLLGES-YEVDAVGDGVAALEAAWKQ-RPDLVISDIMMPRLDGL 707 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R DV V +L E + G AGA+ +L KPF+ L +R + Sbjct: 708 SLLKALRNDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNLDI 767 Query: 121 QKSKDENQFLD 131 + + E + Sbjct: 768 AEVRREALRTE 778 Score = 84.9 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 12/120 (10%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62 +L+V+ + V + L +D G+ A+S +A + +++ N ++ D M G+ Sbjct: 1307 VLVVEDNSEVGEFSTQLLHDLGYETVLASSAEQALKLLDQDADRFNIVLSDVVMPGMDGV 1366 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDF--EKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ ++ V + G L KP++ E L +R Sbjct: 1367 ALGREIRKR--LPNLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRAM 1419 >gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8] gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans A8] Length = 242 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ R D G+ V A E E E + LV+D + G+ Sbjct: 5 RRVLIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLE-EGSWDALVLDLMLPGIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L +R L + Sbjct: 64 LEICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRS 123 Query: 122 KSKDENQFLDA 132 + + N +DA Sbjct: 124 DALERNARIDA 134 >gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 221 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD +R+V G V EAT+ EA + + +++D + + Sbjct: 1 MARVLLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLL---PQADVVILDLMLPQLT 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + + I G GA+ ++ KPF+ + +R L + Sbjct: 58 GWQVAQELRRDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRR 117 Query: 121 QKSKDEN 127 K E Sbjct: 118 SGFKQEL 124 >gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F +A + PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDT-YAPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R ++ + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCRDIRSR---SNTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RYQ 123 >gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 9/125 (7%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + V + G+ V A EA + KE+ + +++D + Sbjct: 1 MKKLFKILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 59 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + +R+ ++V + L +V+ E+ + G GA+ +L KPF+ L ++ Sbjct: 60 KLSGEEVCSKIRES---SNVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVK 116 Query: 116 ELPQM 120 L + Sbjct: 117 ALIRR 121 >gi|158338214|ref|YP_001519391.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158308455|gb|ABW30072.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris marina MBIC11017] Length = 545 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++VD + +V + G+ V A S A + P +++D M + F Sbjct: 7 IMVVDDTPANLEVISETLSSAGYRVAAAISGERALKRLHTHP-PALILLDIQMPVMDGFE 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + ++ D + ++ G GA ++ KPF L +R Q+ Sbjct: 66 VCRQIKANAATANIPIIFITARSDTQSILHGFEMGAVDYISKPFQEAELLARVRTHLQL 124 >gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +++D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVILDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|160895287|ref|ZP_02076058.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50] gi|156862980|gb|EDO56411.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50] Length = 229 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + G+ ++EA + EA E KE + +++D M + Sbjct: 1 MYNILICDDEKDIVSALKIYLKTSGYNIYEAYNGKEALEQI-KEHDIHLVLMDIMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ V L + + I G GA+ ++ KPFN + ++ + Sbjct: 60 GITAMLKIREET-NLPVILLTAKSEDTDKILGLEVGADDYITKPFNPVEVIARVKSQLRR 118 >gi|153873722|ref|ZP_02002207.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Beggiatoa sp. PS] gi|152069810|gb|EDN67791.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Beggiatoa sp. PS] Length = 299 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD KV F + A A E + P+ +++D M + F Sbjct: 146 KILLVDDMPANIKVLFTFLKKQNFELLIAEDGEMALESVLWDH-PDLILLDVMMPKMDGF 204 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ D+ V ++ D I G + GA ++ KPF+ E + ++ + Sbjct: 205 EVCQRLKENEKTKDIPVIFMTALSDTIDKIKGFKLGAVDYISKPFDVEEVLLRIKTHLTI 264 Query: 121 QKSKDENQF 129 + + Q Sbjct: 265 HHLQQQLQL 273 >gi|22299208|ref|NP_682455.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22295390|dbj|BAC09217.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 288 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + +V L G+ V A S A E E P+ +++D M + Sbjct: 12 RILIVDDTPENVEVLTTLLQLEGYDVRGAISGQMALMGIEAEP-PDVILLDIMMPDMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q P + + ++ D + G ++ KPF + + ++ + Sbjct: 71 ELCQTLKQNPKTKHIPIIFISALDDVFDKVKAFEIGGADYITKPFQQAEVLARVKNQLTI 130 Query: 121 QKSKDENQFLDA 132 + + + +A Sbjct: 131 ALLQRKLRQKNA 142 >gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145] gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145] Length = 241 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + N+ GF V A+ + + + LV+D + G Sbjct: 7 KILVVDDDARLRSLLERYLNEQGFQVRVASDAEQ-MDRLLTRENYHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V L + D I G GA+ +L KPFN L +R + + + Sbjct: 66 SICKRLRQTNNTIPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRRRG 125 Query: 123 SKD 125 + Sbjct: 126 VEA 128 >gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++LLV+ + + G+ V A + A E E+ P+ +V+D + Sbjct: 1 MTTVLLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELAEEN--PDIVVLDILLPEID 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ V + L + D I G GA+ +L KPF+ L ++ L Sbjct: 59 GLEVCRRLRQRSS---VPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALL 115 Query: 119 QMQKS 123 + + Sbjct: 116 RRRSL 120 >gi|269925905|ref|YP_003322528.1| response regulator receiver protein [Thermobaculum terrenum ATCC BAA-798] gi|269789565|gb|ACZ41706.1| response regulator receiver protein [Thermobaculum terrenum ATCC BAA-798] Length = 278 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + + + G+ V A S A + P+ +++D + G Sbjct: 1 MSRILVVDDEPALLDLLKEHLTMEGYTVDTAPSGEYALDLMRIRP-PDLVILDIMLPGID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P D+ V L + ++AG +GA ++ KPF+ + L +R Sbjct: 60 GYEVCTRMQADPKLQDIPVIMLTAKSLTSDLVAGYESGAEDYVTKPFDIDELLIRIRARL 119 >gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 238 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ + G++V EA + +A + E + +++D M Sbjct: 6 TVLVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMAL-EKDYHCILLDLMMPEKDGV 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + L + + + G AGA+ +++KPF+ + ++ + + Sbjct: 65 AVAT-ELRETKMTPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAILRRSA 123 Query: 123 S 123 + Sbjct: 124 A 124 >gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD VR+ G+ V A EA P+ +++D M + Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHL-SGTHPDAVIMDVMMPRLDGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A G DV + L + + G AGA+ +++KPF + L +R L + + Sbjct: 64 ATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123 Query: 124 K 124 + Sbjct: 124 E 124 >gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA [Mycobacterium intracellulare ATCC 13950] Length = 228 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA E P+ LV+D M + Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELI-ASDRPDALVLDVMMPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L MR L + K Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 123 SKDENQ 128 +DE + Sbjct: 121 PEDEAE 126 >gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 220 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + +R++ L G+ V A + EA + + +++D M + Sbjct: 1 MTHILIAEDEFDIRELLTELLESSGYHVTSAANGMEAL-KLHQSATFDLMILDIMMPYLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +Q+ + + +L D + + G G + ++ KPF+ L + + + Sbjct: 60 GFEVA-QQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRR 118 Query: 121 QKSKDENQF 129 ++ DE Q Sbjct: 119 IRTNDEEQL 127 >gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] Length = 237 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + V + G+ V A EA E E P+ +++D+ + + Sbjct: 1 MSKILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASEN-PDLVLLDQMLPE-I 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ+ + V + + + G GA+ ++ KPF+ L ++ + Sbjct: 59 EGTEVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRR 118 Query: 121 QKS 123 Q + Sbjct: 119 QDA 121 >gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + + V A + EA + N +++D M + Sbjct: 5 RVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKY-NLIILDLMMPKVDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R T+V + L + I G GA+ ++ KPF+ + ++ L + Sbjct: 64 EVCRRLRNK---TNVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRR 120 >gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R V A EA E + + +++D + + Sbjct: 3 KKVLVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKY-DIILLDLMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ +DV + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 LEVCQQIRE---FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDENQ 128 + + Q Sbjct: 119 RAHLEAKTQ 127 >gi|224536541|ref|ZP_03677080.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM 14838] gi|224521797|gb|EEF90902.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM 14838] Length = 1493 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R + R++ + + + EA + E + E +P+ ++ D M + Sbjct: 1227 SILIVEDNRELRSLLRNILSKK-YTILEAANGEEGLKLA-SEAIPDMIISDVMMPVMDGL 1284 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ V + L + + I G + ++ KPF+ L+ + L Sbjct: 1285 EMIKRIKENKDICYVPIILLSAKASLDDRITALEQGIDDYITKPFSSSYLKARIASLFTK 1344 Query: 121 QKSKDE--NQFLDA 132 +K E + L A Sbjct: 1345 RKQLQEIFMKQLSA 1358 >gi|16329618|ref|NP_440346.1| CheY family protein [Synechocystis sp. PCC 6803] gi|1652101|dbj|BAA17026.1| CheY subfamily [Synechocystis sp. PCC 6803] Length = 147 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M+++LLV+ S R++ + D G+ V A EA E + P+ +V+D M + Sbjct: 27 MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKL-QNFSPDLVVLDIVMPRMN 85 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G R GA++++ KPF L +++L Sbjct: 86 GYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145 Query: 119 Q 119 + Sbjct: 146 R 146 >gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L++D + + R G+ V AT + +E P+ +V+D M Sbjct: 5 KKILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQE-RPDLVVLDLMMPKLSG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +RQ V L + I G GA+ ++ KPF L ++ + + Sbjct: 64 NDVCRIIRQESE---TPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLR 120 Query: 120 MQKSK 124 + + Sbjct: 121 RTEHR 125 >gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus lugdunensis HKU09-01] gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus lugdunensis HKU09-01] Length = 236 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA E EK + P+ +V+D + Sbjct: 3 QKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEK-VQPDLIVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDE 126 + +E Sbjct: 120 RSQFVNE 126 >gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 235 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFK-FVLLDIMMPTMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + + Q Sbjct: 134 RRTNQRTQIQ 143 >gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+VD +R++ + G++V EA + +A E E + +++D M L Sbjct: 8 SVLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEK-SLEKEYHCILLDIMMPEKDGL 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A +R+ + L + + + G GA+ +++KPF+ + ++ + + Sbjct: 67 EVCAEIRERAA---TPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRR 123 Query: 121 QKS 123 ++ Sbjct: 124 SQA 126 >gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 246 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 3/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V EA + + ++LP+ +V+D + V Sbjct: 1 MPRVLVIDDDPAILELVAFNLEMSGYEVLEAPDGHKG-QAFALQMLPDLIVLDLMLPQVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ ++ + L + + G AGA+ ++ KPF E L +R L Sbjct: 60 GLTICQRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALL 119 Query: 119 QMQKSKDENQFLDAI 133 + + I Sbjct: 120 RRTDRMPQAARHAEI 134 >gi|227113247|ref|ZP_03826903.1| DNA-binding transcriptional regulator CpxR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF V A +A + + + L++D M Sbjct: 1 MNKILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQVL--DNTIDLLLLDVMMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDENQ 128 + D+ Q Sbjct: 116 RRSNWTDQQQ 125 >gi|163742633|ref|ZP_02150019.1| response regulator [Phaeobacter gallaeciensis 2.10] gi|161384218|gb|EDQ08601.1| response regulator [Phaeobacter gallaeciensis 2.10] Length = 422 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S + R++ +GF V EA S A E CE + P+ ++ D M G+ Sbjct: 18 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDP-PDLILSDWMMPGMNG 76 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 LEF R + L + + ++ G AGA+ FL KP + + LR + Sbjct: 77 LEFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGER 136 Query: 117 LPQMQKSKDENQFL 130 + +MQ+ E + Sbjct: 137 ILRMQRELSEKNRI 150 >gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei TW08/27] gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma whipplei TW08/27] Length = 227 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + G+ V A + A E P+ +++D + + Sbjct: 4 TKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEE-PDLIIMDVMLPDMSG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F A R G V +L E I G G + ++ KPF+ + + + + + Sbjct: 63 FAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRT 122 Query: 122 KSKD 125 K D Sbjct: 123 KIDD 126 >gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 236 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60 +L+VD +R++ + GF +A +A + + P +++D M G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQ-RPALILLDWMMPGGVSGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ +++ V L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DLCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 121 QKSKDENQFLDA 132 + + +DA Sbjct: 125 ANALSGEKTIDA 136 >gi|238028314|ref|YP_002912545.1| putative two-component system, response regulator [Burkholderia glumae BGR1] gi|237877508|gb|ACR29841.1| Putative two-component system, response regulator [Burkholderia glumae BGR1] Length = 241 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A R G D+ V L D I G GA+ +L KPFN L + + + Sbjct: 60 DGLTALRRLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 231 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 8/138 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLVD VR+ + F V A++ EA + +E +P ++ D M Sbjct: 6 KVLLVDDEPGVRESVQAYLQYGDDFEVRTASNANEAWDLLNQE-IPELVISDIMMPQVDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +F+ +R+ + V +L I G AG +++L KPF+ E L ++ L + Sbjct: 65 YQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALIKSLIE 124 Query: 120 MQK----SKDENQFLDAI 133 ++ + EN L+ I Sbjct: 125 RRRQSLQATSENARLEEI 142 >gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 4/123 (3%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + G+ A EA E + + +V+D M + Sbjct: 1 MTRTILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQP-FDLIVLDVMMPRM 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V + + + + I G GA+ ++ KPFN L ++ L Sbjct: 60 DGLELCRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSL 119 Query: 118 PQM 120 + Sbjct: 120 LRR 122 >gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + F V EA EA + + +++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDKNIALIILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L D + G G + ++ KPF+ + L + + + Sbjct: 65 EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLD 131 ++ L Sbjct: 122 TGQTNKEDVLS 132 >gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 229 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+++ VR+ R G V A + + E + P+ +++D + G+ Sbjct: 1 MPRVLIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELL-RSFRPDAVILDLMLPGMP 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R V + D ++ G AGA+ +++KP L +R + Sbjct: 60 GLEVCRRIRAH---HQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+VD +R++ + G++V EA + +A E E + +++D M L Sbjct: 6 SVLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEK-SLEKEYHCILLDIMMPEKDGL 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A +R+ + L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCAEIRERAA---TPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRR 121 Query: 121 QKS 123 ++ Sbjct: 122 SQA 124 >gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD VR+ R G+ V A EA E+E P+ V+D M Sbjct: 1 MK-ILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQE-QPDLTVLDVMMPQLD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L +R G D + L +AG AGA+ +L KPF E L +R L Sbjct: 59 GLGVCRELR--SSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLL 116 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 117 RRARADAIQQ 126 >gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 227 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ R GF V A A ++ P+ +++D + Sbjct: 1 MAFVLVVDDDPGIVRLVRSYLEQAGFRVASAFDGATA-RRLIRQERPDLVILDLMLPDED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R P + + L +D I G GA+ +++KPFN + ++ + Sbjct: 60 GFDIARSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVL 119 Query: 119 QMQKSKDENQFLD 131 + L+ Sbjct: 120 RRVSGGTVRNRLE 132 >gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51] gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ G+ V EA S +A E LP+ +V+D + G+ Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALL-TEFLPDLVVLDLMLPGIDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 D + L + I G GA+ +++KPFN L ++ + + + Sbjct: 66 EVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRD 125 Query: 123 SKDENQ 128 + + Sbjct: 126 RYEAGR 131 >gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1] gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 230 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A+ E + KE L + +++D + G+ Sbjct: 3 KKVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKL-DVIILDLMLPGMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D I G GA+ ++ KPF+ + ++ + + Sbjct: 62 MDVCKQLRL--GKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|317479680|ref|ZP_07938804.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316904181|gb|EFV26011.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 885 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + + ++ L + V A + EA + E + +V D M + Sbjct: 633 TILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNED-IDLIVSDVMMPVMDGI 690 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +V+ + + V L + E GA++F+ KPFN L +R L + Sbjct: 691 EFCRYVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLLKY 750 Query: 121 QKSKDEN 127 ++ K + Sbjct: 751 KERKAHD 757 >gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 224 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + + G+ V A + E + + +++D + + Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + V V + + + G GA+ +++KPF+ + ++ + Sbjct: 62 GWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAIL 118 Query: 119 QM 120 Sbjct: 119 SR 120 >gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V AT+ E + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 246 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R+ + D F+V A + E ++ LP+ ++ D M Sbjct: 21 RLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQN-LPDLVITDIMMPEVDGY 79 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F+ +R P + V +L + I G +AG +++L KPF+ E L ++ L + Sbjct: 80 QFLEQMRSDPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLER 139 Query: 121 QKSKDEN 127 + + + Sbjct: 140 RAATRQE 146 >gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 230 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D VR+ R G+ V A +A E EKE P +++D M + Sbjct: 1 MK-ILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKE-QPTLVILDVMMPQMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G D + L +AG AGA+ +L KPF E L +R L Sbjct: 59 GLEVCRTLR--STGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLF 116 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 117 RRSITESQ 124 >gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] Length = 234 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 + +L+VD +R++ F V EA + E E P+ +++D + Sbjct: 4 NRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDE-RPDLVLLDWMLPSVTG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ +V + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLR 122 Query: 120 MQKSKDENQFLD 131 S + ++ Sbjct: 123 RASSVAAEKAIE 134 >gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 228 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ R+V + GF V A + EA +E P+ +V+D + +E Sbjct: 7 VLVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEAL-VAVRETPPDVIVLDWMLPHVSGIE 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V L + + G GA+ ++ KP++ L +R + Sbjct: 66 VCRQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRRV 125 Query: 122 KSKDENQFLD 131 + + L+ Sbjct: 126 RPSTVAERLE 135 >gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P] gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P] Length = 232 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 64/128 (50%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + ++ + + G+ +F AT+ EA + +K +P+ +++D M + Sbjct: 7 KILLVDDEPDIIEIVGYNLRNEGYQIFTATNGQEAIKSAKKN-IPHLILLDIMMPEMDGI 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +V + +L + +AG AGA+ ++ KP + L ++ L + Sbjct: 66 EACEKIRKISSLENVLIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKSLLRR 125 Query: 121 QKSKDENQ 128 KS+ +N+ Sbjct: 126 LKSEKQNE 133 >gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 246 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + G+ + +A + + +L P+ +++D + V Sbjct: 1 MPRILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKG-QALAVQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +D+ V L + + G AGA+ +L KPF + +R L Sbjct: 60 GFTVCQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 230 Score = 144 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA + E + +++D + + Sbjct: 3 KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMA-TENAYDMVLLDIMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H+R+ +++ + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQHIRE---FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKD 125 + Sbjct: 119 RTAASQ 124 >gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 230 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D +R + R GF V EA + + + P+ +++D M + Sbjct: 1 MTKILLIDDDPHIRDIVRFALKREGFAVVEAGDGVQGLALAQADS-PDLILLDIGMPEID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + +L D I G G + ++ KPF+ L ++ + Sbjct: 60 GTEVCRRLRRESR---VPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 248 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +VR V G+ V EA +A E +E P +V+D M V Sbjct: 16 RILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREK-PALVVLDIEMPRVGGL 74 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V + + + G GA+ +L KPFN+E L +R L + Q Sbjct: 75 AVLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQA 134 Query: 123 SKDE-NQFLD 131 + + Q L Sbjct: 135 ATETPIQRLQ 144 >gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 249 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD VR+ + +FGF V A++ +A + ++ P ++ D M Sbjct: 25 KLLLVDDEPGVREAVKEYLAEFGFTVQVASNANDAWQMLQQNT-PELVISDIMMPKVDGY 83 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F+ +R P + V +L I G +AG +++L KPF+ + L ++ L + Sbjct: 84 QFLQQLRDDPRFKALPVVFLTARGMTSDRIQGYQAGCDAYLPKPFDPDELVAIVQNLLER 143 Query: 121 QKSKDEN 127 + + E+ Sbjct: 144 RAASSED 150 >gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLVD + + R GF V A A E +K P+ +++D + + F Sbjct: 6 ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSP-PDLMILDVMLPELDGFE 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + + L + I G GA+ ++ KPFN L ++ + + + Sbjct: 65 VCKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRRTRH 124 Query: 124 K 124 + Sbjct: 125 Q 125 >gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] Length = 231 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGV 59 M +L+ + ++R G+ V + ++ +A + E + + ++D M G+ Sbjct: 1 MKRILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGDFDIALLDIMMPGI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F R + + + L + + G GA+ ++ KPF+ L + + + Sbjct: 61 DGFEVCKRLRERSSTIGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAIHR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|172061354|ref|YP_001809006.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993871|gb|ACB64790.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 241 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|163737971|ref|ZP_02145387.1| response regulator receiver modulated serine phosphatase [Phaeobacter gallaeciensis BS107] gi|161388587|gb|EDQ12940.1| response regulator receiver modulated serine phosphatase [Phaeobacter gallaeciensis BS107] Length = 423 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S + R++ +GF V EA S A E CE + P+ ++ D M G+ Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDP-PDLILSDWMMPGMNG 77 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 LEF R + L + + ++ G AGA+ FL KP + + LR + Sbjct: 78 LEFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGER 137 Query: 117 LPQMQKSKDENQFL 130 + +MQ+ E + Sbjct: 138 ILRMQRELSEKNRI 151 >gi|298675086|ref|YP_003726836.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] gi|298288074|gb|ADI74040.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] Length = 296 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ G+ A + EA E + + +++D M Sbjct: 9 KILIVDDEPELVELLADYL--DGYNTIAAYNGQEAINIIESDN-IDVILLDVMMPDINGF 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E H++ + V + D + I G +GA+ FL KP + E L +R ++ Sbjct: 66 EVCTHIKNDDSLNYIPVLMITALSDHDNKIHGLDSGADDFLTKPVDGEELNARVRSALRI 125 Query: 121 QKSKDEN 127 +K DE Sbjct: 126 KKLHDEL 132 >gi|294775873|ref|ZP_06741372.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294450242|gb|EFG18743.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1344 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ R F D + V A E E + +PN +V D M + Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQA-RIPNIIVSDIMMPVMDGIE 1151 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 Query: 122 KSKDENQFLDAI 133 K L I Sbjct: 1212 KKIASLLALADI 1223 >gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F A + P+ +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFR-FKPDLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRRE---NNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQKSKDEN 127 + N Sbjct: 121 RYTATQSN 128 >gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis CH188] gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis CH188] gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF] Length = 236 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V + E +++++D + G+ Sbjct: 1 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQY-DFIILDVMLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 D + L + + I G GA+ +L KPF+ + M+ + + Sbjct: 60 GLEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QK 122 K Sbjct: 120 LK 121 >gi|254412104|ref|ZP_05025879.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181070|gb|EDX76059.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 450 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + F V A A E + P+ +++D M G+ F Sbjct: 10 KLLIVDDNPTNLGFLFEYLTQSDFKVLVALDGESAIEQVQYA-QPDLILLDVMMPGLDGF 68 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ P D+ V ++ D + G + GA ++ KP E + ++ + Sbjct: 69 TTCKHLKSDPSTQDIPVIFMTALSDTVDKVQGFKIGAVDYITKPLQPEEVLCRVQTHLAL 128 Query: 121 QKSKDEN 127 + + Sbjct: 129 RNLQKRL 135 >gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 204 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D +R+ L N GF V EA + E E +E P+ ++ D +M + Sbjct: 1 MKRILVIDDEAKLRRQFAELLNLEGFAVSEARNGREGVELARRE-RPDLVMCDITMPEMN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R P + V +L + E + G GA+ +L+KP L A++ Sbjct: 60 GHRVLEALRAEPATSHVPFIFLTGWGEREDVRTGMNLGADDYLVKPVEPADLIAAVQARL 119 Query: 119 QMQKSKDENQ 128 + ++ + + Sbjct: 120 RRAQAANPAR 129 >gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|150003100|ref|YP_001297844.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931524|gb|ABR38222.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1340 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ R F D + V A E E + +PN +V D M + Sbjct: 1090 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQA-RIPNIIVSDIMMPVMDGIE 1147 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1148 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1207 Query: 122 KSKDENQFLDAI 133 K L I Sbjct: 1208 KKIASLLALADI 1219 >gi|90408203|ref|ZP_01216371.1| elongation factor P [Psychromonas sp. CNPT3] gi|90310733|gb|EAS38850.1| elongation factor P [Psychromonas sp. CNPT3] Length = 241 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ F V A E + + P+ +++D + G Sbjct: 5 KQVLVVDDDKDIRELLAEYLTKNNFSVITAGDGIE-MDAHLAQTEPDLIILDVMLPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ + V + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 64 FILCQRIRQ---TSMVPIIMLTANSDELDRILGLEIGADDYIAKPFSPRELLARIKALLR 120 Query: 120 MQKSKDEN 127 +E Sbjct: 121 RNHFVNEQ 128 >gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590] gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590] Length = 249 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA E EK + P+ +V+D + Sbjct: 16 QKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEK-VQPDLIVLDVMLPKKDG 74 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 75 IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 132 Query: 120 MQKSKDE 126 + +E Sbjct: 133 RSQFVNE 139 >gi|325104532|ref|YP_004274186.1| histidine kinase [Pedobacter saltans DSM 12145] gi|324973380|gb|ADY52364.1| histidine kinase [Pedobacter saltans DSM 12145] Length = 1368 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+VD ++ + N + V A + +A + E + ++ D M + Sbjct: 1118 KLLVVDDNYEIVDFLSSHLNK--YQVAVAYNGKQALDILE-NDSFDLIISDVMMPEIDGI 1174 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + + + I G AGA+ ++ KPF+ L ++ + + Sbjct: 1175 QLCKKIKQNINTCHIPVILLTAKNETQHQIKGLEAGADDYVTKPFSMSLLTAKVQSILKS 1234 Query: 121 QKSKDE 126 ++ E Sbjct: 1235 RRRLKE 1240 >gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 233 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R++ R GF V EA A E +V+D + + Sbjct: 5 KILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDY-AVIVLDLMLPELDGR 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R+ D V L D I G GA+ +++KPF+ L ++ L + Sbjct: 64 EVCAQLRKQ---KDTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKR 120 >gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 220 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ EAR+ E E + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETE-QVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 134 RRTNQHAQIQ 143 >gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 242 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 134 RRTNQHAQIQ 143 >gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 246 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R+ + D F V A + E E ++ LP+ ++ D M Sbjct: 21 RLLLVDDEPGLREAVQAYLEDSDFTVDVAGNAREGWELLQQN-LPDLVITDIMMPEVDGY 79 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F+ +R+ PL + V +L + I G +AG +++L KPF+ E L ++ L + Sbjct: 80 QFLKQMREDPLFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVVIVKNLLER 139 Query: 121 Q 121 + Sbjct: 140 R 140 >gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium 4_1_37FAA] Length = 241 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F EA + PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDS-YSPNLVLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +D + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRAK---SDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQKSKDEN 127 ++ + Sbjct: 121 RYQAPRQE 128 >gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 235 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V A + E +++++D + + Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSED-FDFIILDVMLPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + L + D I G GA+ +L KPF+ + M+ + + Sbjct: 60 GIEITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QKSK 124 + + Sbjct: 120 LEPR 123 >gi|330807931|ref|YP_004352393.1| two-component Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376039|gb|AEA67389.1| Putative two-component Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 243 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + + +++D + Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTTPDGA-GFRQALNDAPSDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWVRQHPRQAHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola F0402] Length = 228 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ + R G+ V A A E E + P+ L++D + + Sbjct: 1 MNKVLIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDT-PDILLLDIMLPQLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V V L + ++G +GA+ +L KPF E L MR + + Sbjct: 60 GL-EVLRRIRKTSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRR 118 Query: 121 QKSK 124 + + Sbjct: 119 NEVR 122 >gi|298483673|ref|ZP_07001848.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298270243|gb|EFI11829.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1344 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210 Query: 121 QKSKDE 126 +K + Sbjct: 1211 RKLLQQ 1216 >gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 1128 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V + E E+E P L++D M G+ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 784 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ K+ Sbjct: 785 SELRETHDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 844 Query: 124 K---DENQFLDA 132 + EN+ L++ Sbjct: 845 EMRHMENKVLES 856 >gi|302873857|ref|YP_003842490.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|307689897|ref|ZP_07632343.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|302576714|gb|ADL50726.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] Length = 366 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 8/135 (5%) Query: 1 MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M +L+VD + K+ + + G+ ++ TS EA E K + N +++D Sbjct: 1 MKDNSQIKILVVDDTPFNIKIVSTILQEVGYNIYSTTSGREALEMV-KNIRFNLILLDVM 59 Query: 56 MEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 M + I ++ D+ + +L D E ++ GA +L+KPFN + L Sbjct: 60 MPEMDGYEVIRKLKNDEDTRDIPIIFLTARGDSESVVRAFDEGAYDYLIKPFNPKELLSR 119 Query: 114 MRELPQMQKSKDENQ 128 ++ +++ +++ + Sbjct: 120 VKTHIELKFARENLE 134 >gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis] Length = 245 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++VD +R++ + G+ V A S EA E + P+ +++D + + F Sbjct: 8 TIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTK-PDMIILDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D + + G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|95931140|ref|ZP_01313865.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132830|gb|EAT14504.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 454 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 1/132 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+ + D GF V + A + +E P+ +++D M G+ Sbjct: 1 MKHILVVDDERNIRESITGILQDEGFQVTTSCDGATALDAVTEEK-PDLVLLDIWMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ V + E + + GA F+ KP + E L + ++ Sbjct: 60 GIETLTQIRNQYDDLQVIMMSGHATIETAVTATKLGAYDFIEKPLSLEKLLVCIHNALKV 119 Query: 121 QKSKDENQFLDA 132 + +EN+ L A Sbjct: 120 HELVEENKTLKA 131 >gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL N1-067] Length = 236 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + DV + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 232 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD ++ K R G+ V A EA E KE + +++D + G Sbjct: 1 MARVLVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERA-KEREYDVVLLDVMLPGHD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +++ + L + D I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GFEVCQTIRE---FSEMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAII 116 Query: 119 QMQKSKD 125 + K Sbjct: 117 RRNNKKS 123 >gi|224536597|ref|ZP_03677136.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM 14838] gi|224521853|gb|EEF90958.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM 14838] Length = 1364 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LLLV+ + + KV + + + +AT+ EA E EK ++ D M + Sbjct: 1115 KKLLLVEDNEELLKVMADSLSRE-YHIIKATNGKEAIEQLEKTKDIVVVISDVMMPVMNG 1173 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++++ + + L + +I G AGA+ ++ KPF L ++ L + Sbjct: 1174 IELCHYMKKQDEWLHIPIILLTAKSSESDIIEGYEAGADDYITKPFQLTLLLVKIKSLLK 1233 Query: 120 MQKSKDEN 127 +++ +N Sbjct: 1234 NKENLLKN 1241 >gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] Length = 233 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 4 NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2M] gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2] gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD1] gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD1] gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2] gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2M] Length = 235 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 6 NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 65 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124 Query: 121 QKSK 124 + + Sbjct: 125 RAPQ 128 >gi|88602714|ref|YP_502892.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1] gi|88188176|gb|ABD41173.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1] Length = 393 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+VD +R+ ++ G+ V EA +A E E+ + +++D M G Sbjct: 7 RLLIVDDDPAIREFLKNRLMMEGYEVSEAEDAEKALERLEEHPDTDLILLDVIMPGASGF 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +++ + V + + R GA +L KPF+ + + + Sbjct: 67 DLLRTLKEDRRYCQIPVIMVTALGLVQDKELAFRLGAGDYLTKPFDTREMLARIGTHITL 126 Query: 121 QKSKD----ENQFLDAI 133 +K D NQ L I Sbjct: 127 KKKNDAITHTNQVLSTI 143 >gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550] gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550] Length = 242 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 134 RRTNEHKQIQ 143 >gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] Length = 225 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +RK+ + F V EA EA + K+ + ++ D M + F Sbjct: 5 KIMVVDDESRMRKLVKDFLKKKDFEVIEAADGEEALDIFFKDKSISLIICDVMMPKINGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+++ + V + L + + + G G + ++ KPF+ + L + + + Sbjct: 65 -DVVKEIRQYSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRRSN 123 Query: 123 SKDENQFLDA 132 + + L A Sbjct: 124 NLSTGEVLKA 133 >gi|254424776|ref|ZP_05038494.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192265|gb|EDX87229.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 262 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + ++ + + GF A + + + P+ +++D + G+ Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRF-RLIQPDLIILDLMIPGLDGLE 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A VRQ D ++ L + I G GA+ +++KPF+ L +R + + Sbjct: 62 VCARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRR 120 >gi|218778401|ref|YP_002429719.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218759785|gb|ACL02251.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 319 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD KV + D + + A + +A E E P+ +++D M + Sbjct: 6 RILIVDDERQNIKVLKDFLRD-DYKIMAAKTGEQALEAARSEHPPDLILLDIVMPEMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + ++ G GA ++ KPF ++ ++ Q+ Sbjct: 65 DLCRILKEDEKTMHIPIIFVTGLGSTNDEAKGFELGAVDYITKPFRPVIVKARIKTHIQL 124 Query: 121 QKSKDENQFLDAI 133 ++ D L +I Sbjct: 125 KRKSDLLDRLASI 137 >gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 255 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD VR R + G+ V A +A E +KE P +++D M G+ Sbjct: 24 MK-ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKE-QPALVILDVMMPGMD 81 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G D + L + + G AGA+ +L KPF E L +R L + Sbjct: 82 GLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 141 >gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp. ATCC 51142] gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp. ATCC 51142] Length = 237 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + K+ + F A A + +++ P+ +++D + Sbjct: 1 MK-ILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQ-APDLIILDLMLPKLD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ D ++ L + + + G GA+ +L+KPF+ L +R L Sbjct: 59 GLEVCTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|167585829|ref|ZP_02378217.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 241 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 980 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 + +VD + +V + + + A++ EA EK P+ +++D M + Sbjct: 725 KIFVVDDEPVNIQVLINHLTLQNYAISIASNGLEALAQVEKGYKPDIILLDVMMPKMTGY 784 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R++ ++ + L + ++ G +GAN +L KP ++ L ++ Q+ Sbjct: 785 EVCRKLREVFPVNELPIVMLTAKNQVSDLVEGLESGANDYLTKPISKHELIARLKMHLQL 844 Query: 121 QKS 123 K Sbjct: 845 SKL 847 >gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 231 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLVD +R+ + + GF V A++ E + ++ P+ ++ D M + Sbjct: 5 LLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQST-PDLVISDVMMPQVDGYQ 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R+ P + V +L + I G +AG +++L KPF+ + L + L + Sbjct: 64 FLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLLTRR 123 Query: 122 KSK 124 SK Sbjct: 124 NSK 126 >gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5] gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5] Length = 226 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + G++V EA EA + ++ +++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLTREGYLVLEAGDGMEAMDLFYEDKDIALVILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREIREHSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 +S + +DA Sbjct: 122 TQSTESGDVMDA 133 >gi|294495691|ref|YP_003542184.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] gi|292666690|gb|ADE36539.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] Length = 285 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + + + + A S E + E E + +++D M G+ Sbjct: 8 KILIVDDEPQNLDLMEAYLSHL-YEITLAESGEECLQKVE-EKDIDLILLDIMMPGMSGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ + + + + E I GA+ FL KP NR L ++ L ++ Sbjct: 66 DVAKTLKESESTRHIPIIMVTALSEKEDRIKSIEVGADDFLTKPVNRVELLTRVKSLLRI 125 Query: 121 QKSKDEN 127 + DE Sbjct: 126 KSLHDEL 132 >gi|294647220|ref|ZP_06724819.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|292637507|gb|EFF55926.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] Length = 1344 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210 Query: 121 QKSKDE 126 +K + Sbjct: 1211 RKLLQQ 1216 >gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 225 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 231 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 8/138 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLVD VR+ + G F V A++ +A E EKE +P+ ++ D M Sbjct: 6 KILLVDDEPGVRESVQAYLEYSGDFNVKVASNANQAWELIEKE-IPDLIISDIMMPQVDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +F+ +R+ P + V +L I G AG +++L KPF+ E L ++ L + Sbjct: 65 YQFLGKLREDPRYQSLPVVFLTARGMTSDRIQGYHAGCDAYLSKPFDPEELEAIVKNLLE 124 Query: 120 MQ----KSKDENQFLDAI 133 + K+ E+ L+ I Sbjct: 125 RRKVSIKASSESVKLEEI 142 >gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 225 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 228 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + R + + V A++ EA + + + + +++D M + Sbjct: 1 MMRVLIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLY-DAVFDLVILDVMMPHID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G ++ V L + D E + G GA+ +L KPF+ + L +R L + Sbjct: 60 GLSLLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRR 119 Query: 121 QKSK 124 + + Sbjct: 120 SEGR 123 >gi|237714923|ref|ZP_04545404.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229445248|gb|EEO51039.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1344 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210 Query: 121 QKSKDE 126 +K + Sbjct: 1211 RKLLQQ 1216 >gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] Length = 230 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ R G+ V + EA L P+++++D + G+ Sbjct: 5 KILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNA-LKPDFVLLDVMLPGLDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 64 QVCREIRKK---SNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRR 120 Query: 121 QKSKDENQFLDAI 133 ++ + + Sbjct: 121 LGQSNQQAEVKEV 133 >gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 238] gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 238] Length = 227 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+++ R+V + N G+ V A + + E P+ +V+D + +E Sbjct: 6 VLVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGL-LVVAEDAPDVIVLDWMLPHVSGIE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + L + + G GA+ +++KP+ L +R + Sbjct: 65 ICRQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124 Query: 122 KSKDENQFL 130 + Q L Sbjct: 125 RPSKVGQVL 133 >gi|317405401|gb|EFV85716.1| sensor protein [Achromobacter xylosoxidans C54] Length = 744 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L D + +R+ R L + V A A ++ P+ ++ D M G+ Sbjct: 225 RILCADDNADLREYLRSLL-AADYDVRIAADGATALRSARQDP-PDLVITDIMMPGMDGL 282 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V V L E + G AGA+ +L+KPF+ L+ + ++ Sbjct: 283 TLLQALRGDARTRTVPVILLSARAGQEARVEGLDAGADDYLVKPFSPAELQARVGAHLRL 342 Query: 121 QKSKDENQ 128 + E Q Sbjct: 343 AMLRQETQ 350 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + FG V A +A + E P +++D M G+ Sbjct: 604 RILVVDDNTDSADTTAMVLQAFGAQVGVARDGRQALAMLD-EFAPAVMLVDIGMPGMDGH 662 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR P G V + + E AG + L+KP + L + L + Sbjct: 663 EVARRVRSAPSGQGVVLIAMTGWGQDEDRRHSHEAGFDHHLVKPVDFAALEQLLVSLARR 722 Query: 121 QKSK 124 ++ + Sbjct: 723 RQRR 726 >gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + GF V A +A P+ +V+D M G+ Sbjct: 8 RILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAV-IVASNFEPHVVVLDVMMPGMDGL 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G DV V L + + + + G GA+ +++KPF+ E L ++ + Q Sbjct: 67 EVCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQ 125 >gi|312797029|ref|YP_004029951.1| transcriptional regulatory protein ompR [Burkholderia rhizoxinica HKI 454] gi|312168804|emb|CBW75807.1| Transcriptional regulatory protein ompR [Burkholderia rhizoxinica HKI 454] Length = 240 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D +R + R G V E + P+ +V+D M GV Sbjct: 3 TQILVIDDDQELRDLLRDYLTRQGIEVSVLHDAAS-LERRLERERPDLIVLDLMMPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + G D+ V L D I G GA+ +L KPFN L ++ + + + Sbjct: 62 LTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121 Query: 122 KS 123 +S Sbjct: 122 RS 123 >gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011] gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011] Length = 245 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++VD +R++ + G+ V A S EA E + P+ +++D + + F Sbjct: 8 TIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTK-PDMIILDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D + + G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|160885098|ref|ZP_02066101.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483] gi|156109448|gb|EDO11193.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483] Length = 1325 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1131 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1132 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1191 Query: 121 QKSKDE 126 +K + Sbjct: 1192 RKLLQQ 1197 >gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] Length = 227 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A +E P+ +++D + G+ F Sbjct: 4 RILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQF-QEHNPDLVLLDVMLPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D + L D ++ G AGA+ ++ KPF + L +R + Sbjct: 63 DVCRAIRRV---SDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119 Query: 121 QKSKDENQFLD 131 ++ ++ L Sbjct: 120 REDSQADEGLS 130 >gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 229 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLVD +R+ + GF V A++ E ++ ++ P+ ++ D M + Sbjct: 5 LLLVDDEPGLREAVSDYLQESGFSVQVASNAREGWDWMQQNT-PDLVISDVMMPQVDGYQ 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R+ P V V +L + I G +AG +++L KPF+ + L + L + Sbjct: 64 FLKQLREDPRFQTVPVIFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENLLSRR 123 Query: 122 KSKDENQFLDAI 133 +K + + I Sbjct: 124 LTKATGEESETI 135 >gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis] gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus faecalis 62] Length = 236 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V + E +++++D + G+ Sbjct: 1 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQY-DFIILDVMLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 D + L + + I G GA+ +L KPF+ + M+ + + Sbjct: 60 GLEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119 Query: 121 QK 122 K Sbjct: 120 LK 121 >gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88] gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88] Length = 233 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++++VD +R + + G+ V +A + +A E EKE + + +++D M + Sbjct: 4 NTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKV-DLIILDIMMPNMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + ++ + L + + I G AGA+ ++ KPFN L ++ + Sbjct: 63 IEACTKIREE-KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRY 121 Query: 122 K 122 K Sbjct: 122 K 122 >gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] Length = 232 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+VD + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQ-RIDLVVLDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQVRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + G+ V EA EA + N LV+D M + + Sbjct: 5 KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSTKGINLLVLDVMMPKMDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+++ + V + L + + + G G + ++ KPF+ + L + + + Sbjct: 65 -EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRT- 122 Query: 123 SKDENQFLDA 132 + E + ++A Sbjct: 123 VQTEGEQIEA 132 >gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRSR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|126031095|pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D53a And Y102c Length = 127 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++ + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLAWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+R+ + D+ V L + E + G GA+ + KPF+ + L ++ + + Sbjct: 62 IQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans TK24] gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+++ VR R G V A + + E + P+ +V+D + G+ Sbjct: 1 MPRVLIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQL-RSFRPDAVVLDLMLPGMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R V + D ++ G AGA+ +++KP L +R + Sbjct: 60 GLEVCRRIRAHD---QVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVL 116 Query: 119 QMQKSKDENQ 128 + ++Q Sbjct: 117 RRVGGTADDQ 126 >gi|253987643|ref|YP_003038999.1| osmolarity response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779093|emb|CAQ82253.1| transcriptional regulatory protein ompr [Photorhabdus asymbiotica] Length = 239 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +R + + GF V A + + + + +V+D + G Sbjct: 5 NKILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQ-MDRLLTRESISLIVLDLMLPGEDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 64 LSVCQRLRNQNNSVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 Query: 122 KSK 124 +K Sbjct: 124 ANK 126 >gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + + G+ V EA +A + + +++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + D + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREIRRH---STVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILRR 121 Query: 121 QKS 123 + Sbjct: 122 SGA 124 >gi|170691903|ref|ZP_02883067.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170143187|gb|EDT11351.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 241 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 3 TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + G D+ V L D I G GA+ +L KPFN L ++ + + + Sbjct: 62 LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121 Query: 122 K 122 + Sbjct: 122 R 122 >gi|160884659|ref|ZP_02065662.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483] gi|156109694|gb|EDO11439.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483] Length = 1346 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + R R+ + V A + EA E ++E LP+ ++ D M + Sbjct: 1099 LLVVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEE-LPDLVISDVMMPQMDGNE 1156 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + V L + E + G + GA+ ++ KPFN L +R+L ++ Sbjct: 1157 LCRLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIELS 1216 Query: 122 KSKD 125 + Sbjct: 1217 RYHR 1220 >gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 250 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ V +A + + +L P+ +++D + V Sbjct: 1 MPRILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] Length = 232 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 58/127 (45%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ +R++ + F V A V +A +++ P+ +++D + G + Sbjct: 5 NVLVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQE-PDLILLDWMLPGVSGV 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E+ +++ D+ + + + E I G GA+ ++ KPF+ L +R + + Sbjct: 64 EWARRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRR 123 Query: 121 QKSKDEN 127 + + Sbjct: 124 SNRQSKL 130 >gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 238 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ ++ + R G A EA + P+ +V+D + GV Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEA-DRLALRHRPDLVVLDWMLPGVDGLA 72 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + GA+ +L KPF+ + L ++ L + Sbjct: 73 LCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRR 129 >gi|330997905|ref|ZP_08321739.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569509|gb|EGG51279.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1370 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ R F V EA E E + LP+ +V D M + Sbjct: 1112 KKILVVEDHDEFRHFLVEQLQK-DFCVVEARDGVEG-ELAARTELPDLIVSDLMMPRMDG 1169 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + L + I G AGA+S++ KPFN E L+ +R+L + Sbjct: 1170 MELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIE 1229 Query: 120 MQKSKDEN 127 ++ + + Sbjct: 1230 QKERRQKM 1237 >gi|295084690|emb|CBK66213.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1344 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210 Query: 121 QKSKDE 126 +K + Sbjct: 1211 RKLLQQ 1216 >gi|262406809|ref|ZP_06083358.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262355512|gb|EEZ04603.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1325 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1131 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1132 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1191 Query: 121 QKSKDE 126 +K + Sbjct: 1192 RKLLQQ 1197 >gi|209516015|ref|ZP_03264875.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209503475|gb|EEA03471.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 241 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 3 TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + G D+ V L D I G GA+ +L KPFN L ++ + + + Sbjct: 62 LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121 Query: 122 K 122 + Sbjct: 122 R 122 >gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 238 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L+V+ + ++ R++ GF+ ++ +A L P+ +++D + G+ Sbjct: 1 MKPTILIVEDEKEIAQLVRNMLETEGFICETLSNGADAL-RVVTVLQPDLVILDLMLPGL 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +RQ L D ++ L + I G GA+ +L KPF+ L +R L Sbjct: 60 DGLEVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRAL 119 Query: 118 PQMQKSKDENQFL 130 + +++ L Sbjct: 120 LRRSLRGEQSDHL 132 >gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1343 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R+ + + + A + EA KE + ++ D M + Sbjct: 1098 NILIVEDNTDIRQYLCEELGNS-YHILTAENGEEALSIV-KEQEIDLILTDVMMPVMDGL 1155 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + L + D ++ + G + GA+ ++ KPF+ + +R L + Sbjct: 1156 QLCKQIKQNLRTCHIPIIILSAKTDLKEQLEGLQVGADDYIPKPFSMAVIVAKIRNLFRT 1215 Query: 121 Q 121 + Sbjct: 1216 R 1216 >gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] Length = 231 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 11/133 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + G+ V AT+ EA + + + + ++ D M + Sbjct: 1 MTHILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAV-DLIITDIMMPQMD 59 Query: 61 E-----FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R+ ++ + I GA+ +L KPF+ L ++ Sbjct: 60 GYDFIDAVLQLREDQ-----PFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVK 114 Query: 116 ELPQMQKSKDENQ 128 L + + K Q Sbjct: 115 NLLRRIQPKKAGQ 127 >gi|186682101|ref|YP_001865297.1| response regulator receiver modulated serine phosphatase [Nostoc punctiforme PCC 73102] gi|186464553|gb|ACC80354.1| response regulator receiver modulated serine phosphatase [Nostoc punctiforme PCC 73102] Length = 396 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 11/143 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D IVR V + + G+ A + E + L P ++ D M Sbjct: 1 MFKILVIDDDPIVRTVLKKTLQNQGYDTSVAKNGEEGIRQAQL-LRPALIICDWMMSQLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLM----EVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 LE +R P F L + E + G AGA+ F+ KP L+ + Sbjct: 60 GLEVCRRIRTDPELATTFFILLTAKGAARGEEEDRVRGLDAGADEFISKPIEMNELKARV 119 Query: 115 RELPQMQK----SKDENQFLDAI 133 R ++ + + + + L+ + Sbjct: 120 RAGLRLHQLNQDLQSQKEVLETL 142 >gi|328469451|gb|EGF40397.1| putative two-component response regulator [Vibrio parahaemolyticus 10329] Length = 235 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ GF V A + A + P+ +++D M G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGG-AMWQLLNDHHPDLIILDIMMPGEDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D+ + L + +AG GA+ ++ K F+ L ++ + + Sbjct: 63 FTLCQKLRKN---SDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119 Query: 120 MQKSKD 125 +S Sbjct: 120 RSQSTA 125 >gi|302334934|ref|YP_003800141.1| response regulator receiver protein [Olsenella uli DSM 7084] gi|301318774|gb|ADK67261.1| response regulator receiver protein [Olsenella uli DSM 7084] Length = 303 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 3/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + + + V A A + ++E P+ +++D + Sbjct: 1 MKKILVVEDDPASLTLITEILKGYDYTVVSALDGRSALDVSKREN-PDLIILDVMLPALN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R M + + L + + + I AGAN FL KPF R L ++ L Sbjct: 60 GYQVCERLRSMSQFRNTPIIMLTVLNEDSQRIRALEAGANGFLSKPFKRVELLTRIKALL 119 Query: 119 QMQKSKDENQFLDAI 133 Q + DE L+ + Sbjct: 120 SAQVNSDEMVSLNTV 134 >gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + G+MV EA EA + ++ +++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLTREGYMVLEAGDGMEAMDLFYEDKDIALIILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ + V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREVRE---TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRR 121 Query: 121 QKSKDENQFLDA 132 N L+A Sbjct: 122 TLGAVGNDSLEA 133 >gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] Length = 239 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R+ GF V A EA + E P+ +++D + G +E Sbjct: 11 ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEA-DLRLHETTPDLVLLDWMVPGLSGIE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L + + G GA+ +++KPF+ L +R L + Sbjct: 70 LCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRA 129 Query: 122 K 122 K Sbjct: 130 K 130 >gi|153809460|ref|ZP_01962128.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185] gi|149127920|gb|EDM19142.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185] Length = 1338 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + G+ + + EA +E P+ ++ D M + Sbjct: 1078 QRILIVEDNDDLRNYLVDMLRT-GYNIQSCPNGKEAL-IIIREFNPDLVISDIMMPEMGG 1135 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A ++ + + V L D + M+ G GA++++ KPF+ L+ ++ + Sbjct: 1136 DELCATIKGDLEMSHIPVVLLTALGDEKHMLEGLEIGADAYITKPFSVGILKATIKNILT 1195 Query: 120 MQKSKDE 126 + Sbjct: 1196 NRALLRR 1202 >gi|115376892|ref|ZP_01464113.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|310825368|ref|YP_003957726.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115366071|gb|EAU65085.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|309398440|gb|ADO75899.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 989 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + +R L F V +A EF +E P+ ++ D M G Sbjct: 618 RVLVVDDNADMRAYIVGLLQPS-FAVEAVADGVKALEFL-REQTPDLILSDVMMPRLGGF 675 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR V L E + G AGA+ +L+KPF+ L +R +M Sbjct: 676 GLLREVRAKAEWKAVPFIMLSARTGEEASVEGFEAGADDYLVKPFSARELLARVRSSLEM 735 Query: 121 QKSKDENQFLDA 132 + + E +A Sbjct: 736 ARLRREAAVREA 747 >gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 237 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A E +++LP+ ++ D M Sbjct: 12 RLLLVDDEPGLRTAVQAYLEDEGFDVTTAEDGEEGFIKA-QQMLPDLVISDVMMPRLDGF 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G AG + ++ KPF+ + L +R + Q Sbjct: 71 GLLRKLREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 130 Query: 121 -QKSKDENQFLD 131 Q+ E Sbjct: 131 QQRLLQEAARFA 142 >gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 226 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + G+ V EA +A + KE + +++D M + Sbjct: 5 KILMVDDEERMRKLVKDFLTIKGYRVLEAGDGEQAIDIFFKEKDISLVILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 ETCKTIR---RYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRR 121 Query: 121 QKSKDENQFLDA 132 + L+A Sbjct: 122 GSGTSTGEILEA 133 >gi|212692193|ref|ZP_03300321.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855] gi|212665314|gb|EEB25886.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855] Length = 1373 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R + LF+ + + A + E KE +P+ ++ D M + F Sbjct: 1113 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKE-IPDLVITDVMMPIMNGF 1170 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L D E ++ G GA+ ++LKPFN E LR ++ L + Sbjct: 1171 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIKS 1230 Query: 121 QKSKDE 126 + + Sbjct: 1231 RTELKQ 1236 >gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032] gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 9/133 (6%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + ++ GF + A + EA EKE + + +V+D M Sbjct: 1 MKEQMHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPV-DLVVLDIMMP 59 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + F +RQ + + + +L E I G GA+ +++KPF+ L + Sbjct: 60 DMDGFEVCQRIRQ---TSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIE 116 Query: 116 ELPQMQKSKDENQ 128 + + + Sbjct: 117 TTLRRIRGLSLKR 129 >gi|126658533|ref|ZP_01729680.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] gi|126620120|gb|EAZ90842.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] Length = 416 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 8/139 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD KV + G + AT+ A + P +++D M + Sbjct: 8 KHILIVDDKPTNLKVLATTLTEAGLDIAVATNGKMALQQV-ANDPPELILLDVLMPEIDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ P D+ + ++ D + G GA ++ KPF E + + Q Sbjct: 67 FETCKQLKANPETKDIPIIFMTALSDTIDKVRGLSLGAVDYITKPFETEEVIARINTHLQ 126 Query: 120 MQKS----KDENQFL-DAI 133 ++ + +NQ L +A+ Sbjct: 127 LRYLSKTVEQKNQQLTEAL 145 >gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 225 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13] Length = 239 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R++ + +++ EA + A E E + +++D M G+ Sbjct: 6 RILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMAL-EKEYDVILLDVMMPGMDGM 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + + + G G + +++KPF+ + ++ L + Sbjct: 65 EVCKEIREK---KATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 242 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFK-FVLLDIMMPTMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + + Q Sbjct: 134 RRTNQRTQIQ 143 >gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 246 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R+ + D F+V A + E ++ LP+ ++ D M Sbjct: 21 RLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQN-LPDLVITDIMMPEVDGY 79 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F+ +R P + V +L + I G +AG +++L KPF+ E L ++ L + Sbjct: 80 QFLEQMRSEPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLER 139 Query: 121 QKSKDEN 127 + + + Sbjct: 140 RAATRQE 146 >gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311] gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311] Length = 255 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR+V G+ V A EA E E P+ +V+D + + F Sbjct: 11 TILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSES-PDLVVLDVMLPKMDGF 69 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 70 AVCRRLRAESC---VPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRR 126 >gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 237 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T++ + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|326800045|ref|YP_004317864.1| AraC family transcriptional regulator [Sphingobacterium sp. 21] gi|326550809|gb|ADZ79194.1| two component transcriptional regulator, AraC family [Sphingobacterium sp. 21] Length = 1349 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 57/130 (43%), Gaps = 4/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R+ R + ++V + +A + +P+ ++ D M + Sbjct: 1097 KRILVVDDDIDIREFLRRELSPA-YLVNTYANGEDAYKSML-NAVPDLVISDVMMPIMDG 1154 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ PL V + L + + + G GA+ +++KPFN + L ++ L + Sbjct: 1155 MILCKKIRENPLTHHVPIVLLTAKGEDNHQLQGLGLGADLYIVKPFNMDVLTENIKSLLR 1214 Query: 120 MQKSKDENQF 129 ++ N+ Sbjct: 1215 NREIVRVNER 1224 >gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 226 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 226 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V AT+ + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 226 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V AT+ + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 248 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + GF V A A ++E P+ +V+D + + F Sbjct: 15 RLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEE-PDLVVLDVMLPDMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + +L D + G G + ++ KPF E + +R + + Sbjct: 74 TVARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTH 133 Query: 123 S-KDEN 127 + +DEN Sbjct: 134 ATQDEN 139 >gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 256 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ ++ V G+ V+ A A + P+ +++D + G+ F Sbjct: 22 TILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWA-VRPDLVILDIMLPGMDGF 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV++ +L + + G GA+ +L KPF+ L ++ + + + Sbjct: 81 EVCRRIQQDF-DVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRRSR 139 >gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 248 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + GF EA E P+ +++D + + Sbjct: 25 MKTKILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNED-PDLILLDVMLPSM 83 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ + V + L D ++ G +GA+ ++ KPF + L +R Sbjct: 84 NGVDVCRAIRK---TSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQ 140 Query: 118 PQMQKS 123 + ++ Sbjct: 141 LRRREQ 146 >gi|300868139|ref|ZP_07112773.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300333874|emb|CBN57953.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 626 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD V GF V+ A+ A + + E P+ +++D M + F Sbjct: 11 VLVVDDHASNLAVLSDYLEQVGFEVWVASDGESALQAVQYE-APDIILLDIMMPCLDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 ++ P D+ + ++ + + G GA ++ KPF E + +R +M Sbjct: 70 TCRRLKANPRTKDIPLIFMSALSETVDKVKGLSLGAVDYITKPFQHEEVLVRLRLHLKMS 129 Query: 121 ---QKSKDENQFLDAI 133 ++ +++N L + Sbjct: 130 ILNKRMEEKNSLLSEL 145 >gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 238 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + + ++ GF V A E E P+ +V+D + + Sbjct: 3 KKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKAL-EGKPDLIVLDLMLPKMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121 Query: 122 K-SKDENQF 129 + EN+ Sbjct: 122 QIIAQENEQ 130 >gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 228 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + ++ GF + A++ +A EKE + + +V+D M Sbjct: 1 MKEQMHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPV-DLVVLDIMMP 59 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + F +RQ + + + +L E I G GA+ +++KPF+ L + Sbjct: 60 DMDGFEVCQRIRQ---TSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIE 116 Query: 116 ELPQMQKSKDENQ 128 + + + Sbjct: 117 TTLRRIRGLSLKR 129 >gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] Length = 237 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + ++ GF V A + +A E E P+ V+D + + F Sbjct: 9 KLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAED-PDLAVLDVMLPDIDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + +L + D + +AG G + ++ KPF+ + + +R + + + Sbjct: 68 SVTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 127 Query: 123 -SKDENQFLD 131 ++E+ L Sbjct: 128 PLEEEDSRLK 137 >gi|330831636|ref|YP_004394588.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328806772|gb|AEB51971.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ GF V A E R+ + P+ +++D M G Sbjct: 5 KQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLAQHS-PDLIILDIMMPGEDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V + L D + G GA+ ++ KPF+ L+ ++ L + Sbjct: 64 FTLCQQIRRD---SQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLR 120 Query: 120 MQKSKDENQ 128 + + + Sbjct: 121 RAEFRQPEK 129 >gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ + ++ ++ F V EA E + + +++D + G L+ Sbjct: 3 VLLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSY-DLIILDLMLPGASGLD 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + DV V L D + + G GA+ ++ KPF+ + L + + + Sbjct: 62 ICKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRR 120 >gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V GF V A + +A KE + + +++D + + Sbjct: 5 KKILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLF-KEEVIHLVILDLMLPRISG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + +DV + L + + E I+G GA+ +L KPF+ L ++ L + Sbjct: 64 EEICNKIRAV---SDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] Length = 228 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + G+ A+ E P+ +++D + + Sbjct: 7 KILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFF-EYKPDLVLLDVMLPHMDGI 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRRDSE---IPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122 Query: 121 QKSKDENQ 128 ++ ++ Sbjct: 123 YNTESVDR 130 >gi|167765313|ref|ZP_02437426.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183] gi|167696941|gb|EDS13520.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183] Length = 1354 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R F + EA + EA E K + ++ D M + Sbjct: 1105 TILIVEDNQEIRHYLSSGLAAL-FNILEAGNGEEALEKL-KNHEADIIITDVMMPVMDGI 1162 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++Q + V L + D + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1163 KLCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFSIAVLTSKIQNMMRT 1222 Query: 121 QK 122 ++ Sbjct: 1223 RR 1224 >gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family [Psychrobacter arcticus 273-4] Length = 240 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60 +LL++ + ++ + V A E + KE + +V+D + + Sbjct: 3 KQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPDMD 62 Query: 61 E--FIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R + + V + L + D + G GA+ ++ KPF L +R Sbjct: 63 GMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122 Query: 117 LPQMQKSKDE 126 + + + ++ Sbjct: 123 VIRRHEQPNQ 132 >gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 228 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLVD ++K+ H GF V A E P+ +++D + Sbjct: 6 RRILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNT-FEPHLIILDIMLPKLDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R +DV + L + D + G GA+ ++ KPF L +R + + Sbjct: 65 TEVCRRIRAQ---SDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMR 121 Query: 120 MQK 122 + Sbjct: 122 RAQ 124 >gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus ATCC 53653] gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus ATCC 53653] Length = 290 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A EA +EL P+ +V+D + + Sbjct: 66 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRT-TRELRPDAVVLDVMLPDMDGL 124 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 125 TVLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 184 Query: 123 SKD 125 + Sbjct: 185 AAA 187 >gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 237 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ + GF V A A E + P+ +++D + L Sbjct: 5 RILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAEL-VRPDLIILDIMLPQLDGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R M + + L + + + G GA+ ++ KPF+ + ++ + Sbjct: 64 EVCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLRA 123 Query: 121 QKSKDENQ 128 ++ + + Sbjct: 124 KRILEAEK 131 >gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 232 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + K GF V A + +A + P+ LV+D M + Sbjct: 4 KKILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNR-WQPDLLVLDVMMPKMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + +L + + I G G++ +L KPF+ L +R + + Sbjct: 63 YEVCRKIREQ---SNVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 243 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 4/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + V + G++ AT E + + + +++D + + Sbjct: 1 MERILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHMLPDMS 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ G + + +L D + + GA+ ++ KPF L +R + Sbjct: 61 GLDICKILRQ--EGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVL 118 Query: 119 QMQKSKDENQFLDA 132 + + + A Sbjct: 119 RRYQLSGNGEQRTA 132 >gi|294809168|ref|ZP_06767884.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294443562|gb|EFG12313.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1301 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210 Query: 121 QKSKDE 126 +K + Sbjct: 1211 RKLLQQ 1216 >gi|290477255|ref|YP_003470172.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289176605|emb|CBJ83414.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 230 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF V A +A ++ + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFTVVLAHDGEQALQYIDSS--IDLLLLDIMMPRKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIETLKELRQD---HQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDEN 127 + ++ Sbjct: 116 RRSNWSEQQ 124 >gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] Length = 247 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA++ EA E + +++D + + Sbjct: 11 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + L + + + G +GA+ +++KPF+ + ++ L + +S Sbjct: 70 VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128 >gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 223 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + + G+ V A + E+ +++D + + Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPDIS 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ V V + + + G GA+ +++KPF+ + + ++ + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAIL 117 Query: 119 QMQKSKDENQFLD 131 + E + + Sbjct: 118 ARTSGESEVEKTE 130 >gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 1128 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V + E E+E P L++D M G+ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 784 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ K+ Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 844 Query: 124 K---DENQFLDA 132 + EN+ L++ Sbjct: 845 EMRHMENKVLES 856 >gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 238 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ + F + EA A E + +++D M + Sbjct: 6 KILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDY-DVIILDIMMPEKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ D V L + + + G GA+ +++KPF+ ++ L + Sbjct: 65 EVCKELRKE---KDTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRR 121 >gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13] Length = 242 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A E +E + +V+D + Sbjct: 3 KKILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEE-RFDMIVLDLMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKELRQHKI--HTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 250 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R GF V A++ A + P +++D + + Sbjct: 1 MTKILVVDDEPQILRALRINLTARGFDVTTASTGAGAL-RAAAQCHPEVVLLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + T + V L D + + AGA+ ++ KPF + L +R + Sbjct: 60 GF-EVLAGLRGWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRR 118 >gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|315445373|ref|YP_004078252.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1] gi|315263676|gb|ADU00418.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1] Length = 1386 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D + +R+ L G+ V +A E E P+ ++ D M L Sbjct: 630 RVLVADDNADMREYLGRLLRSDGYAVEAVVDGRQALEAIRAEP-PDLVISDVMMPRLDGL 688 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +R V V L E I+G +AGA+ +L+KPF L +R Q+ Sbjct: 689 GLVSELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRANIQL 748 Query: 121 QKSKD 125 + ++ Sbjct: 749 ARLRE 753 >gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 234 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+ D V ++ + G+ V +A A E ++ P +V+D + + Sbjct: 8 KRILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQA-RQTSPALIVLDLMLPEMSG 66 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +++ + V L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 67 LEVCKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLR 126 Query: 120 MQKSKDE 126 + E Sbjct: 127 RASNGAE 133 >gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + +V GF V A A E P +++D M G+ Sbjct: 1 MKKILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHS-PQLVILDIMMPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ V L D + + G GA+ ++ KPF + + + + Sbjct: 60 GWSVLEKIREKSA---CPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVL 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRSAN 121 >gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1175 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 62/129 (48%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD + +R + + ++V A++ EA + +P+ +++D M + Sbjct: 7 NTILVVDDTQTIRHITKKTLEADNYVVLAASNGPEALSIA-ADKIPDLILLDVMMPDMDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + ++ D+ V ++ + E + G GA F+ KPF+ L + ++ + Sbjct: 66 FEVCSRLKADICTRDIPVVFITASGNKEHEVKGLDLGAEDFVHKPFHEGVLLARVGQILR 125 Query: 120 MQKSKDENQ 128 +++++ + Sbjct: 126 RLQAEEQLR 134 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 7/128 (5%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK----ELLPNYLVIDESMEGVL 60 L+VD + R++ R F +G EA + A + V+D M + Sbjct: 675 LIVDDNSTNREILRVRFGSWGMRPGEAANGSAALSMLHQAKAENDPFVLAVLDMQMPDMD 734 Query: 61 E--FIAHVRQMPLGTDVFVYYL-LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++++ D + + G +S L KP L ++ ++ Sbjct: 735 GETLGRNIKEDGQLKDTRLIMMSSATGQTGDSRRLHETGFDSILNKPVLPSELYASLEKI 794 Query: 118 PQMQKSKD 125 + D Sbjct: 795 LARTGAAD 802 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 5/101 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + + ++V + G + EA E + + +++D M + Sbjct: 826 RILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALE-NIPYDLVLMDVQMPEMGGL 884 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDF----EKMIAGARAGANS 99 A R + V L G GA Sbjct: 885 EATRRIRSMEHGTPVKPLSTTGSPLGCFTGQAGGMEHGAED 925 Score = 67.1 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 19/56 (33%) Query: 74 DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129 + + + E AG + + KP N + L + + ++++ Sbjct: 966 RIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWLSKERNQRTEDR 1021 >gi|260771196|ref|ZP_05880123.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio furnissii CIP 102972] gi|260613793|gb|EEX38985.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio furnissii CIP 102972] Length = 1113 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A E + +E P L++D M G+ Sbjct: 708 LLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEK-PELLLLDIMMPGMSGYQ 766 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + V L + + G AGAN +L KPFN++ L + Sbjct: 767 VCEELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 824 Query: 122 KSKDENQFLD 131 SK E + L+ Sbjct: 825 ASKAEQRRLE 834 >gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 232 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA + + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQP-IDLVVLDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD HIV ++ + GF V + + ++E P+ +++D + G Sbjct: 4 MGKVLVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDREN-PDVVILDIMLPGKD 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 GLTLC-RSLREIRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRR 121 Query: 121 QKSKD 125 ++ + Sbjct: 122 TQAVE 126 >gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 245 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G+ +A + + +L+P+ +++D + V Sbjct: 1 MPRILVIDDDPAIVELVSINLEMAGYDTTQANDGIKG-QALAVQLVPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V L + + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 235 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 6 NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 65 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124 Query: 121 QKSK 124 + + Sbjct: 125 RAPQ 128 >gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 234 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V + G+ V+EA + EA EK + + +V+D + + Sbjct: 6 KKILVVDDEKKIVEVVKSYLEHSGYEVYEAFTGKEALYVFEK-VPLSLIVLDLMLPDLSG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L + + E ++ G GA+ ++ KPF+ + L + + + Sbjct: 65 EEICKIIRKKSR---VPIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium sp. ORS278] gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Bradyrhizobium sp. ORS278] Length = 235 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ G+ V EA KE +P+ +V+D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRL-KERIPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKD 125 + Sbjct: 123 ASPER 127 >gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + + V A EA + N +++D M Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLF-THNTYNLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T++ + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCRRLRNN---TNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response regulator protein [Burkholderia sp. TJI49] Length = 233 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 4 NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + GF V A A +E +P+ +V+D M G+ F Sbjct: 8 RILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLA-QEFVPHVIVLDVMMPGMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G++V V L + + + + G GA+ +L+KPF+ + L +R + Q Sbjct: 67 ETCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRNQ 125 >gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] Length = 233 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ R G+ V A EA L P+ +++D + G+ Sbjct: 5 RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNA-LKPDIILLDIMLPGIDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + + +V+ + G GA+ +++KPF+ + + ++ + + Sbjct: 64 QVCREIRKK---SNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120 Query: 121 QKSKDENQFLDAI 133 + + Sbjct: 121 VGQSSAESEIKEV 133 >gi|269928581|ref|YP_003320902.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787938|gb|ACZ40080.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+ D + ++ R G+ V A + EA E E+E P+ +++D M Sbjct: 1 MRKDLVLVADDDAPILRLVRTKLQADGYSVVTAMNGREAVEIFERE-RPDIVILDLMMPV 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + F A R + ++ V L I G GA+ ++ KPF+ + L + + Sbjct: 60 MDGFEAMQRIRQM-SNAPVIMLTARSGQADKIRGLDLGADDYVTKPFSPDELSARVAAVL 118 Query: 119 QMQK 122 + K Sbjct: 119 RRAK 122 >gi|237708643|ref|ZP_04539124.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229457343|gb|EEO63064.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1344 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ R F D + V A E E + +PN +V D M + Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQA-RIPNIIVSDIMMPVMDGIE 1151 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 Query: 122 K 122 K Sbjct: 1212 K 1212 >gi|212691763|ref|ZP_03299891.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855] gi|212665664|gb|EEB26236.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855] Length = 1344 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ R F D + V A E E + +PN +V D M + Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQA-RIPNIIVSDIMMPVMDGIE 1151 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 Query: 122 K 122 K Sbjct: 1212 K 1212 >gi|171323011|ref|ZP_02911673.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171091604|gb|EDT37194.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 241 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 233 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A E+ EK N +++D + + Sbjct: 4 QQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEK-YNYNTVILDIMLPEMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + L +V+ + I G + GA+ +++KPF+ L +R L + Sbjct: 63 WEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIR 122 Query: 120 M-QKSKDENQFLD 131 Q KD+++ L+ Sbjct: 123 RDQDFKDKDKILE 135 >gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX] gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX] Length = 230 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ +L GF V A + A E ++ + +++D + G Sbjct: 1 MTRVLVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGA-DLVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ ++V V L + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRTLRQK---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKD 125 + + + D Sbjct: 117 RRRTADD 123 >gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] Length = 230 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + + + + G+ V A EA E P+ +++D + +E Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEAL-IMANERAPDLVILDWMLPKVSGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +V + L + I G GA+ +++KPF+ L +R + + Sbjct: 64 VCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRI 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 227 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ L GF V + A + P+ +++D + G+ Sbjct: 3 TRILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRAD-RPDLVLLDVMLPGLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ +DV + + D +IAG AGA+ ++ KPF L ++ + Sbjct: 62 VSVCRLIREE---SDVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLR 118 Query: 120 MQKSKDE 126 Q+ + E Sbjct: 119 RQEPEHE 125 >gi|302878209|ref|YP_003846773.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302580998|gb|ADL55009.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 635 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +LLVD +R + + L G V A + EA E + P ++ D M + Sbjct: 326 ILLVDDDRAIRLLYKALLEKSGHSVTTANNGREALESVKASP-PQLIISDWMMPEMDGIE 384 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---ELP 118 F +R+ P ++V+ + + EK+I AGAN +L KP N + L +R + Sbjct: 385 FCRELRKNPDWHRIYVFIVTAQESTEKLIEAFEAGANDYLSKPINPKVLAARLRSAQRIV 444 Query: 119 QMQKSKDENQF 129 QMQ++++E++ Sbjct: 445 QMQEAQEEDRL 455 >gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] Length = 233 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F + +A + PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDT-YQPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + + + G GA+ +++KPF+ + + +R + + Sbjct: 64 YQVCREIRAKSV---TPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLR 120 Query: 120 MQKSKDENQ 128 + + + Sbjct: 121 RYQVGRQAE 129 >gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 229 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 1 MPTILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117 Query: 119 QMQKSKDE 126 + + DE Sbjct: 118 RRIEVHDE 125 >gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces ambofaciens ATCC 23877] Length = 1368 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+ D + +R+ L + G+ V A E + P+ ++ D M G L Sbjct: 621 LVADDNADMREYLTRLLDGAGYQVDTVDDGLAALEAVRAD-APDLVISDVMMPGLDGLGL 679 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +A +R P V V L E I G +AGA+ +L+KPF L +R ++ + Sbjct: 680 VAALRTDPRTVSVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANVELAR 739 Query: 123 SKDENQF 129 ++ Sbjct: 740 LRNHQAR 746 >gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614] gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ G+ V A + +A ++ + +++D + G Sbjct: 1 MTRVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGA-DIVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ + V V + + D + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQIRQ---TSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 233 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 4 NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi] gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi] Length = 239 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ G+ V A+ EA +E PN +++D + + Sbjct: 9 KILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQE-QPNLVILDIMLPKLDGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ ++V + L D + G GA+ +++KPF + L +R L + Sbjct: 68 TVCSELRKK---SNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRR 124 Query: 121 QK 122 + Sbjct: 125 SE 126 >gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] Length = 234 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ G+ V EA + KE +P+ L++D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLEAAGYEVETVARGDEA-DTGLKERIPDLLILDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P ++ + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122 >gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 235 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + + F GF T+ EA ++ P+ +V+D + G Sbjct: 4 RILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLPGISGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + L + G AGA+ ++ KPF+ L ++ L + Sbjct: 64 DVCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKALMRR 123 Query: 121 QK 122 + Sbjct: 124 AQ 125 >gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 253 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R++ + G+ V A +A E ++E P+ +V+D M Sbjct: 15 KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRES-PDLVVLDVMMPRLNGY 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ + L D I G GA+ +L KPF+ + L + + + Sbjct: 74 GVCQKIREI---SDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130 >gi|269961959|ref|ZP_06176314.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi 1DA3] gi|269833282|gb|EEZ87386.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi 1DA3] Length = 1128 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V + E E+E P L++D M G+ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEK-PELLLLDIMMPGMSGYQVC 784 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ K+ Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASKA 844 Query: 124 KD---ENQFLDA 132 + EN+ L++ Sbjct: 845 EMRHIENKLLES 856 >gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 2/131 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +RKV R G+ V EA + EA C + +++D M + Sbjct: 1 MAHILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDY-DLIIMDVMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + A +++ ++ V L + + G G + +++KPF+ + L ++ + + Sbjct: 60 GYSAC-KEIHKSKNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKR 118 Query: 121 QKSKDENQFLD 131 ++ + LD Sbjct: 119 SARQESDAQLD 129 >gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] Length = 223 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + + V + A ++ E E + + +++D M + Sbjct: 2 RILLVEDDRSLSRAVSTILQKNNYSVDCVENGQMALDYLE-EDIYDAVIMDIMMPVMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A G+++ V L + + + + G GAN +L KPF+ L +R L + +K Sbjct: 61 TALKNLRKCGSNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIRVLTRSEK 120 Query: 123 SKD 125 +D Sbjct: 121 QQD 123 >gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 242 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + +I G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 134 RRTNEHKQIQ 143 >gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 240 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + GF V A E + P +++D M G F Sbjct: 7 ILIVDDDQEIRELLKEYLTRAGFDVLTACDGVEMYQQLALST-PELIILDIMMPGDDGFS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + V + L D + G GA+ ++ KPF+ L ++ L + Sbjct: 66 LCQQIRRK---SQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRRA 122 Query: 122 KSKDENQ 128 + + + Sbjct: 123 EFRQPEK 129 >gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 1113 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A E + +E P L++D M G+ Sbjct: 708 LLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEK-PELLLLDIMMPGMSGYQ 766 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + V L + + G AGAN +L KPFN++ L + Sbjct: 767 VCEELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 824 Query: 122 KSKDENQFLD 131 SK E + L+ Sbjct: 825 ASKAEQRRLE 834 >gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 227 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M + L + + + + + G+ + +A E + +++D M G Sbjct: 1 MFKIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINH-FDLVILDIMMPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R ++ + L + + G +AGA+ +L KPF+ + L + L Sbjct: 60 GIELCRQLR--SSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALL 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] Length = 240 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ + F + EA EA + +++D + + Sbjct: 1 MTKILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMAL-NTDYACILLDLMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R D + L + + + G +GA+ +++KPF+ + ++ L + Sbjct: 60 GIEVANRLRE-YKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 118 >gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] Length = 235 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + K+ + + GF T+ +A E E +++++D + + Sbjct: 3 KQVLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + + D + GA+ +L KPF+ L ++ + + Sbjct: 62 MEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121 Query: 122 KSKDE 126 K + E Sbjct: 122 KGEQE 126 >gi|86141687|ref|ZP_01060211.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] gi|85831250|gb|EAQ49706.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] Length = 227 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 7/132 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + ++ G+ V A++ E + +K P+ +++D M Sbjct: 1 MKKKEIKILLVDDEPDILEIVGYNLSNEGYQVITASNGKEGVKAAKKNN-PHLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R++P + + +L + +AG AGA+ ++ KP + L + Sbjct: 60 PEMDGIEACEQIRKLPGHEETIIAFLTARGEDYSQVAGYDAGADDYITKPIKPKVLVSKV 119 Query: 115 RELPQMQKSKDE 126 + L + K ++E Sbjct: 120 KALLRRLKEEEE 131 >gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD + ++ + GF V + + E+ E K + +V+D + G Sbjct: 4 KNILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELV-KNNDVDLIVLDLMLPGIDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+M + L + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IEVCKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLR 122 Query: 120 MQKSKDENQFLD 131 + K + + Sbjct: 123 RSEEKQTVRAIK 134 >gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL J1-208] Length = 225 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIVELEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 231 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA + P+ +V+D M + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLI-ASDRPDAVVLDVMMPRLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D+ + L + +AG AGA+ +L KPF E L MR L + Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 225 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 253 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R++ + G+ V A +A E ++E P+ +V+D M Sbjct: 15 KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRES-PDLVVLDVMMPRLNGY 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +D+ + L D I G GA+ +L KPF+ + L + + + Sbjct: 74 GVCQKIRAI---SDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130 >gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFK-FVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT] gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 230 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R++ + G+ + A +A + P +++D + G+ F Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALS-VYRLFKPALVILDVMIPGIDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L + G AGA+ +L KPF + L M+ L + Sbjct: 64 ELCRLIRAESS---VPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRR 120 Query: 121 QKSKD 125 + ++ Sbjct: 121 SQMQN 125 >gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V +A +E P+ +++D + G+ F Sbjct: 4 RILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAF-QEHHPDLVLLDVMLPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R ++V + L D ++ G AGA+ ++ KPF L +R + Sbjct: 63 EVCAALRAE---SNVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRG 119 Query: 121 QKSKDENQ 128 ++ E + Sbjct: 120 REDAGEER 127 >gi|301155678|emb|CBW15146.1| DNA-binding response regulator in two-component regulatory system with CpxA [Haemophilus parainfluenzae T3T1] Length = 234 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + GF V A + EA + +++D M + Sbjct: 1 MSKILLVDDDIELTDLLAEVLRLTGFEVEIANNGQEALDKLNSSHQ--LVLLDVMMPVLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ ++V V L + + G GA+ +L KPFN L ++ + + Sbjct: 59 G-IETLKKIRQTSNVPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAILRR 117 Query: 121 QKSKDENQFLDAI 133 + +Q A+ Sbjct: 118 VSPSESSQNSTAL 130 >gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A E + + +V+D + G+ Sbjct: 26 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGV-DLVVLDLGLPGMD 84 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 85 GLEVARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 144 >gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++++VD +R++ + GF + EA EA + E + +++D M + Sbjct: 1 MTTIMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLES-VAAQLVILDIMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + L + + + I G G + +L+KPF+ + L ++ L Sbjct: 60 GWELCRKLREHYDF---PLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALL 116 Query: 119 QMQKSKDENQ 128 + + +Q Sbjct: 117 KRYRIAASHQ 126 >gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] Length = 231 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 5/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +RK+ + G+ V EA EA ++ ++ +++D M + Sbjct: 10 TKILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDKDIALIILDVMMPKMDG 69 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V + L + + G G + ++ KPF+ + L + + + Sbjct: 70 WQVCREIRMHSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILR 126 Query: 120 MQK 122 + Sbjct: 127 RTQ 129 >gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 234 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD VR V R G+ V A A E P+ +V+D + G L Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETAL-RLHAERKPDLVVLDLMLPGVGGL 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V V L + + G GA+ +++KPF+ L + + + Sbjct: 69 EVCRRLRERGE---VPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 125 Query: 121 QKSKDENQ 128 ++ + Sbjct: 126 ARTSQPAE 133 >gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158] gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158] Length = 235 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 6 NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 65 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124 Query: 121 QKSK 124 + + Sbjct: 125 RAPQ 128 >gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 238 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + + ++ GF V A E E P+ +V+D + + Sbjct: 3 KKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKAL-EGKPDLIVLDLMLPKMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121 Query: 122 K-SKDENQF 129 + EN+ Sbjct: 122 QIIAQENEQ 130 >gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA + E + +++D + + Sbjct: 3 KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMA-TENAYDMVLLDIMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H+R+ +++ + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQHIRE---FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKD 125 + Sbjct: 119 RTAASQ 124 >gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 239 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + + R GF V A S EA P+ LV+D + Sbjct: 7 RLLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTA-RRPDLLVLDIMLPDGDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G +V V +L IAG G + ++ KPF+ + L +R + + + Sbjct: 66 ELCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRRTR 125 Query: 123 SKD 125 + Sbjct: 126 REQ 128 >gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 237 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ R+ + G+ V + EA + E P+ +++D + G Sbjct: 1 MTRILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDE-QPDLVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R DV V L + + G GA+ ++ KP++ L MR + Sbjct: 60 GTEVCRELRSRG---DVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVL 116 Query: 119 QMQKSKDENQ 128 + S ++ Sbjct: 117 RRHTSASASE 126 >gi|307728990|ref|YP_003906214.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583525|gb|ADN56923.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 241 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 3 TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + G D+ V L D I G GA+ +L KPFN L ++ + + + Sbjct: 62 LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121 Query: 122 K 122 + Sbjct: 122 R 122 >gi|187923123|ref|YP_001894765.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187714317|gb|ACD15541.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 241 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 3 TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + G D+ V L D I G GA+ +L KPFN L ++ + + + Sbjct: 62 LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121 Query: 122 K 122 + Sbjct: 122 R 122 >gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD + V + GF V A + A KE + +++D + G+ Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLF-KENSYDLVLLDLMLPGLSGE 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V L +V+ E + G GA+ +++KPF+ + ++ + + Sbjct: 61 EICREIRKISA---TPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRR 117 Query: 121 QKSK 124 + Sbjct: 118 THIE 121 >gi|300867146|ref|ZP_07111811.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300334847|emb|CBN56977.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 461 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + V ++ G+ V ATS A + E+ P+ +++D M G+ F Sbjct: 45 ILIVDDTPTNLDVISEALSNAGYKVAFATSGERALQQVERRP-PDLILLDVMMPGIDGFE 103 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ V ++ D + + G + GA ++ KPF + + ++ Q++ Sbjct: 104 TCKRLKANEKTCDIPVMFMTALADVDNKVKGLKLGAVDYVTKPFQEQEVLARVKTHLQLR 163 Query: 122 KSKDENQF 129 + Sbjct: 164 LLTQNLEQ 171 >gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 225 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++RK+ G++ EA +A + E + +++D + Sbjct: 4 KKILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPEYDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + L + + G GA+ ++ KPF+ L + + + Sbjct: 64 WTVCREIRKK---SSTPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] Length = 266 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA K N +++D M Sbjct: 30 MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNY-NLVILDLMMPK 88 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T++ + L + I G GA+ ++ KPF+ + ++ Sbjct: 89 VDGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 145 Query: 117 LPQM 120 L + Sbjct: 146 LMRR 149 >gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 233 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + GF V A+ EA + E E P+ ++D M G+ Sbjct: 6 TKVLVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAE-ESRPDAFILDVMMPGMDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + G D V +L + E I G GA+ +++KPF+ E + +R + + Sbjct: 65 FELLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRRG 124 Query: 122 KSKDENQ 128 K+++ + Sbjct: 125 KAEETEE 131 >gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 236 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + + + GF V A EA E +K +P +++D + +E Sbjct: 6 ILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKH-VPALILLDIMLPYRDGME 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 65 VCREVRKE---HDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRN 121 Query: 122 KSKDEN 127 + E+ Sbjct: 122 QRSAED 127 >gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 226 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 7/132 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + ++ + A + +A + E++ + + +++D MEG+ Sbjct: 4 KTVLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAV-DLVILDVMMEGMDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ + V L + + G + GA+ +++KPF+ + L + + Sbjct: 63 FHVCERIRQK---HSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALR 119 Query: 120 MQKSKD-ENQFL 130 + L Sbjct: 120 RANMDKIRGRRL 131 >gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 234 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + ++ G V A+ E ++E P+ +++D + + Sbjct: 1 MSHILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQE-QPDLVILDWMLPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V V L + D + + G GA+ ++ KPF+ L+ +R L Sbjct: 60 GVEVCRKIRETSI---VPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|295675889|ref|YP_003604413.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295435732|gb|ADG14902.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 241 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 3 TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + G D+ V L D I G GA+ +L KPFN L ++ + + + Sbjct: 62 LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121 Query: 122 K 122 + Sbjct: 122 R 122 >gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 230 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + GF V + +A +E P+ +++D + + F Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEE-PDLIILDVMLPDMNGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + +L + D E I G G + ++ KPF+ + + ++ + + Sbjct: 65 GVTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124 Query: 123 SKDENQFLDA 132 DE+ + A Sbjct: 125 HADEDAIIRA 134 >gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299] gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115] gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300] gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224] gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948] gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937] gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299] gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115] gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300] gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224] gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948] gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937] gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] Length = 247 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA++ EA E + +++D + + Sbjct: 11 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + L + + + G +GA+ +++KPF+ + ++ L + +S Sbjct: 70 VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128 >gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 235 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ G+ V EA KE +P+ +V+D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRL-KERVPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKDENQFLD 131 + L Sbjct: 123 ASPERLATVLS 133 >gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 229 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R+V + G+ EA + +A + +E+ + +++D + + Sbjct: 1 MKNILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALD-IHREVAVDLIILDLMLPDLS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L +V+ + G GA+ +++KPF+ + ++ + Sbjct: 60 GEEVCREIRRQSA---VPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|91782444|ref|YP_557650.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|296159047|ref|ZP_06841874.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|91686398|gb|ABE29598.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] gi|295890608|gb|EFG70399.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 241 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 3 TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + G D+ V L D I G GA+ +L KPFN L ++ + + + Sbjct: 62 LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121 Query: 122 K 122 + Sbjct: 122 R 122 >gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. MED193] gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. MED193] Length = 229 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ R+V + GF V A + E +E +P+ +V+D M + Sbjct: 7 TVLIIEDELAQREVLAYNLEADGFRVIRAENGEEGL-LLVEEDMPDIIVLDWMMPNLSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + + L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 VRPSTVGMRLE 136 >gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 240 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R++ GF V A A E E P+ +V+D + V F Sbjct: 12 RLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAE-EYHPDLVVLDVMLPDVDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V +L + + G G + ++ KPF+ E + +R + + Sbjct: 71 EVTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRRTG 130 Query: 123 S 123 S Sbjct: 131 S 131 >gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] Length = 230 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + + ++ G+ V EA + +E LP+ L++D + G Sbjct: 1 MPKVLIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEA-DLRLRESLPDLLLLDWMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + V L + + I G GA+ +++KPF+ L +R + Sbjct: 60 GIELCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAIL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 232 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EA+ EA + ++D + G+ Sbjct: 1 MSKVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + + +L +V + + GA+ + KPF+ L ++ L + Sbjct: 61 GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRR 120 Query: 121 QKSKDE 126 E Sbjct: 121 VNVHRE 126 >gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 245 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A + EA +EL P+ +++D + + Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGNGAEAL-RITRELRPDAVLLDIMLPDMDGL 79 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 80 TLLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 139 Query: 123 SKD 125 + Sbjct: 140 AAA 142 >gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 232 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD ++ K R G V A EA E +E + +++D + Sbjct: 1 MAKVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMA-REKEYDIVLLDVMLPKRD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +++ + L + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GFEVCQAIRE---FSEMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIM 116 Query: 119 QM--QKSKDENQ 128 + ++S+ + Q Sbjct: 117 RRSTRRSRKDAQ 128 >gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21] gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 225 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + ++ G+ A + P+ +++D + G++ Sbjct: 1 MPTVLVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARR-CKPDLILLDLMLPGMM 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ L + V L + + G GA+ +++KPF+ L +R + Sbjct: 60 GTEVCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVL 119 Query: 119 QMQKSKDE 126 + + E Sbjct: 120 RRKLPAAE 127 >gi|33860688|ref|NP_892249.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633630|emb|CAE18587.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 251 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M S+LL++ +R++ GF V +A + + + P+ +++D + Sbjct: 1 MKISILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L +R+ +++ + + + + G +GA+ ++ KPF+ E L ++ L Sbjct: 60 DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELYVRIKAL 119 Query: 118 PQMQKSKDEN 127 + N Sbjct: 120 LRRTNRAQLN 129 >gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 240 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 5/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60 +LL++ + ++ + V A E + + KE + +V+D + + Sbjct: 3 KQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPDMD 62 Query: 61 E--FIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R + + V + L + D + G GA+ ++ KPF L +R Sbjct: 63 GMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122 Query: 117 LPQMQKSKDE 126 + + + ++ Sbjct: 123 VIRRHEQPNQ 132 >gi|329956519|ref|ZP_08297116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328524416|gb|EGF51486.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1449 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+V+ ++ +R + + + V A++ E + +P+ ++ D M + Sbjct: 1188 NSILVVEDNNELRHFLKSSLSGS-YNVITASNGKEGLQRAIDN-VPDLIISDVMMPIMDG 1245 Query: 62 FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1246 LEMIGQIKANNNICHIPIIVLSAKASLDDRIAGLEHGIDDYITKPFSSTYLKIRITSLLR 1305 Query: 120 MQKSKDEN 127 +K E Sbjct: 1306 QRKELQEM 1313 >gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 268 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 25 KRILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGW-DALILDLMLPGVDG 83 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 84 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 143 Query: 122 KSKDENQFLDA 132 + ++ ++A Sbjct: 144 DALAKDSRIEA 154 >gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1] gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1] Length = 235 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 6 NILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 65 AFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124 Query: 121 QKSK 124 + + Sbjct: 125 RAPQ 128 >gi|229525275|ref|ZP_04414680.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae bv. albensis VL426] gi|229338856|gb|EEO03873.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae bv. albensis VL426] Length = 619 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 214 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAMKREK-PELVLLDIMMPGMSGYQ 272 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 273 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 330 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 331 ASKAELRRIE 340 >gi|224537165|ref|ZP_03677704.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM 14838] gi|224521220|gb|EEF90325.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM 14838] Length = 1288 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + +R + F + + + EA + EA E +KE P ++ D M + F Sbjct: 1043 ILIVDDNKDLRNFLKCSFENQ-YNILEAGNGNEAWELLQKES-PELIISDVMMPDMDGFE 1100 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L D + G GA ++ KPF+ L ++ L + + Sbjct: 1101 LCKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMRNR 1160 Query: 122 KSKDE 126 + E Sbjct: 1161 EIVRE 1165 >gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+V+ +R + F V EA + E E +E P +++D + G+ Sbjct: 1 MDKILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKA-REHKPEVVILDIMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ T++ + L + + G GA+ +++KPFN L ++ + Sbjct: 60 GLEVCKILRQ--EFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAIL 117 Query: 119 QMQKSKDEN 127 + + EN Sbjct: 118 RRVNAVKEN 126 >gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ +R V R GF V A S E E E P+ +++D ++ G+ Sbjct: 4 TILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHEC-PDLVILDLNLPGMDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +DVF+ L + +AG R GA+ +++KPF+ L + + + ++ Sbjct: 63 EVAARLRQD-SDVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRRRR 121 Query: 123 S 123 S Sbjct: 122 S 122 >gi|298489751|ref|YP_003719928.1| response regulator receiver modulated serine phosphatase ['Nostoc azollae' 0708] gi|298231669|gb|ADI62805.1| response regulator receiver modulated serine phosphatase ['Nostoc azollae' 0708] Length = 378 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + ++ + + G+ V A++ E P ++ D M G Sbjct: 1 MFQILVIDDDYSIQIFLKRMLEKQGYEVITASNGQEGILQALA-CPPALIICDWIMPGLT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E H+++ P + F L + G AGA+ F+ KP + L+ +R Sbjct: 60 GIEVCDHIKKDPNLSTTFFILLTSLDSVADRVKGLDAGADDFISKPIEQNELQARVRAGL 119 Query: 119 QMQKSKDENQ 128 ++ + + Q Sbjct: 120 RLHQLNRDLQ 129 >gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4] Length = 239 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ R +++ EA+ EA E + + +++D M + Sbjct: 6 RILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSY-DCILLDIMMPEKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G G + +++KPF+ + ++ L + Sbjct: 65 EVCQAIREK---KATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 Query: 121 QKSKD 125 ++ Sbjct: 122 TSTQS 126 >gi|153872512|ref|ZP_02001384.1| adenylate cyclase [Beggiatoa sp. PS] gi|152071021|gb|EDN68615.1| adenylate cyclase [Beggiatoa sp. PS] Length = 681 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+LLV+ S + ++ L F VF A + A E +K+ P+ +++D ++ G+ F Sbjct: 552 SILLVEDSALNARLLSFLLTKNAFNVFVAKNGNSALEMVKKQH-PHLILLDINLPGINGF 610 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V ++ D + G GA ++ KPF +E + +R ++ Sbjct: 611 EICKRLKSNTHTQDIPVIFMSAYTDTLDKVKGFELGAVDYITKPFQQEEVLARIRTHLKL 670 Query: 121 QKSKDENQF 129 + + +F Sbjct: 671 SHLQKQLKF 679 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEG--VLE 61 ++VD + R+V + + + +AT EA E E+ P+ +++D M + Sbjct: 1 MIVDDEPVNRQVLVNHLSLQNYKTIQATDGQEALNLVLEGEIKPDLILLDIMMPYKTGYD 60 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ ++ + L + ++ G GAN +L KP +++ L ++ + Sbjct: 61 VTQKIRKKWPADELPIILLTAKNQVSDLVVGLEMGANDYLTKPVSKDELLARIKTHLHIL 120 Query: 122 KSKDENQFLD 131 + K E+ L Sbjct: 121 QLKAESLQLA 130 >gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51] gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD + V + GF V A + A ++ + +++D + G+ Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPY-DLVLLDLMLPGLSGE 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V + L +++ E I G GA+ ++ KPF+ + ++ + + Sbjct: 61 EICKEIRKISA---VPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRR 117 Query: 121 QKSK 124 + Sbjct: 118 TDIE 121 >gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRSR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 223 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD + + + G+ + S A ++ E + + +++D M + Sbjct: 1 MYTILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKV-DLVLLDIMMPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ ++V + + ++ G + GA+ ++ KPF+ L + + Sbjct: 60 GWETCKRIRE---FSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] Length = 244 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + V + G+ V A EA E E P+ +++D+ + + Sbjct: 8 MSKILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASEN-PDLVLLDQMLPE-I 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ+ + V + + + G GA+ ++ KPF+ L ++ + Sbjct: 66 EGTEVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRR 125 Query: 121 QKS 123 Q + Sbjct: 126 QDA 128 >gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 233 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD V V G+ V A P+ +V+D + G Sbjct: 1 MARVLIVDDDPTVADVLSRYLQRAGYEVDLAADGHA-ALATAAATRPDLVVLDLMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ V V L I G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVCRRLRE---TGSVPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] Length = 227 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+++ R+V + G+ V A + +E P+ +V+D + +E Sbjct: 6 VLVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGL-LMVEEDAPDVIVLDWMLPHVSGIE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + L + + G GA+ +++KP+ L +R + Sbjct: 65 VCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124 Query: 122 KSKDENQFL 130 + Q L Sbjct: 125 RPSKVGQVL 133 >gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] Length = 230 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + + + + G+ V A EA E P+ +++D + +E Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEAL-IMANERGPDLVILDWMLPKVSGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +V + L + I G GA+ +++KPF+ L +R + + Sbjct: 64 VCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRI 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|262370815|ref|ZP_06064139.1| positive response regulator for the pho regulon [Acinetobacter johnsonii SH046] gi|262314177|gb|EEY95220.1| positive response regulator for the pho regulon [Acinetobacter johnsonii SH046] Length = 236 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60 +L+VD +R++ + GF +A +A + + P +++D M G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQ-RPALILLDWMMPGGVSGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ +++ V L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 121 QKSKDENQFLDA 132 + + +DA Sbjct: 125 ANALSGEKSIDA 136 >gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] Length = 226 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ + ++R+ +F D G+ + EA + EA + E P+++ +D M Sbjct: 1 MK-VLIAEDDILIREGLVDIFEDEGYQIAEAANGREALDLYHNEK-PDFICLDIMMPEIN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++ +D+ V +L + E + G GA+ ++ KPF + + +R + Sbjct: 59 GYDVCREIRKVD--SDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARVRAVT 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 233 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + ++ ++ G+ V A + +A + + ++ P+ +++D + G+ F Sbjct: 6 ILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVD-DIAPDLIILDIMLPGLDGFE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++M + + +L + + E + G GA +L KPF+ L ++ + + Sbjct: 65 VCHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRRI 124 Query: 122 KS 123 Sbjct: 125 NQ 126 >gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 250 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++VD +R++ + G+ V A S EA E + P+ +++D + + F Sbjct: 13 TIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTK-PDMIILDVMLPDIDGF 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D + + G G + ++ KPF+ E + +R + + + Sbjct: 72 TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 131 Query: 123 SKDEN 127 + E+ Sbjct: 132 EQVED 136 >gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 246 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + G+ + +A + + +L P+ +++D + V Sbjct: 1 MPRILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKG-QALAVQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V L + + G AGA+ +L KPF + +R L Sbjct: 60 GFTVCQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|46014953|pdb|1NXO|A Chain A, Micarec Ph7.0 gi|46014954|pdb|1NXP|A Chain A, Micarec Ph4.5 gi|46014955|pdb|1NXS|A Chain A, Micarec Ph4.9 gi|46014957|pdb|1NXV|A Chain A, Micarec Ph 4.2 gi|46014958|pdb|1NXW|A Chain A, Micarec Ph 5.1 gi|46014959|pdb|1NXX|A Chain A, Micarec Ph 5.5 gi|116666718|pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The Essential Response Regulator From S.Pneumoniae In Complex With Bef3 And The Effect Of Ph On Bef3 Binding, Possible Phosphate In The Active Site gi|116666719|pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec gi|116666720|pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-Rec On Bef3 Bound Length = 120 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++D + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QK 122 + Sbjct: 119 SQ 120 >gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862] Length = 233 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A EA + E E P+ +++D+ + L Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESED-PDLVLLDQMLPE-L 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ+ + V + + + G GA+ ++ KPF+ L ++ + Sbjct: 59 EGTEVLRQIRTKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRR 118 Query: 121 Q 121 Q Sbjct: 119 Q 119 >gi|309791481|ref|ZP_07685985.1| signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226478|gb|EFO80202.1| signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 495 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 6/134 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + L G+ + A+S EA + + P+ +++D M + F Sbjct: 7 ILVVDDQPRSQMALSSLLEPEGYRLAFASSGPEALAQM-RLIAPDLILLDVMMPDMDGFE 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P + V + D E ++ G R+GA+ F+ KPFNR LR +R + ++ Sbjct: 66 VCERIRADPAFATIPVVMVTALDDQESLLRGIRSGADDFVTKPFNRTELRARIRTITRLN 125 Query: 122 K---SKDENQFLDA 132 + DE + +++ Sbjct: 126 RFRTLLDEQRIVNS 139 >gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 233 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 9/125 (7%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + V + + V A EA + KE + +++D + Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLF-KETSFHLIILDLMLP 59 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + +R+ ++V + L +V+ E + G GA+ +L KPF+ L ++ Sbjct: 60 KLSGEEVCSKIRES---SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVK 116 Query: 116 ELPQM 120 L + Sbjct: 117 ALIRR 121 >gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 225 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ LL++D + K + + GF V A E + + +++D + + Sbjct: 1 MEKLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNY-DLVILDIMLPKLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R +++ + L D I G GA+ +L KPFN L +R L Sbjct: 60 GFSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALL 116 Query: 119 QMQ-----KSKDENQF 129 + K KDE + Sbjct: 117 RRATNPYTKRKDEIRR 132 >gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 245 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A E +++LP+ ++ D M Sbjct: 20 RLLLVDDEPGLRTAVQAYLEDEGFDVATAVDGEEGFTKA-QQMLPDVVISDVMMPRLDGY 78 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V +L + G AG + ++ KPF+ + L +R + Q Sbjct: 79 GLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNVAQR 138 Query: 121 Q-KSKDENQFLD 131 Q + E Sbjct: 139 QHRLLQEAARFA 150 >gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum JL354] Length = 229 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 L+LV+ + ++ F + G+ V EA E +P+ +++D +EG + Sbjct: 5 KLILVEDDPALAELLEFRFANEGYQVRVTADGDEAL-LMASEDVPDLIILDWMIEGTSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + L + + G GA+ +L KPF+ L + + + Sbjct: 64 EVCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRR 123 Query: 121 QKSKDENQFLD 131 + + ++ Sbjct: 124 IRPALAGETIE 134 >gi|261368040|ref|ZP_05980923.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM 15176] gi|282570028|gb|EFB75563.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM 15176] Length = 233 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R++ G+ V EA S A E K + ++D + G+ Sbjct: 1 MKRVLVVEDEASIREMVALNLKMAGWEVLEAPSAERALELMHKSEPCDAALLDIMLPGMD 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ + + + I G GA+ ++ KPF+ L + L Sbjct: 61 GLSLCETIRRDDN--DIGIIIVSAKGQESDKIRGLSIGADDYITKPFSVSELVARLEALT 118 Query: 119 QMQK 122 + K Sbjct: 119 RRIK 122 >gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 225 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ + +V + G++V A + +E P+ +++D + G+ Sbjct: 1 MKERILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLA-REHRPDLIILDWMLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + + L + + + G AGA+ ++ KPF E L +R L + Sbjct: 60 DGLEVCQRLR-TLCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLR 118 Query: 120 MQKSKD 125 + + Sbjct: 119 RTQMER 124 >gi|268317907|ref|YP_003291626.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] gi|262335441|gb|ACY49238.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] Length = 523 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + + G+ V + EA E+ + + +++D + G+ Sbjct: 396 RRILLVEDDPDIAALIQIRLQRDGYEVVHLANGREAAEWARQHTA-DLVILDVKLPGMDG 454 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +A +R P +V + L + ++ G GA+ +++KPF+ L +R L Sbjct: 455 FELLAFLRAQPAFAEVPIVMLTSLSQEQHVVRGFELGADDYVVKPFSPVELSARVRRLLH 514 Query: 120 MQ 121 Q Sbjct: 515 RQ 516 Score = 94.5 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LLLV+ + + + + + EA+++ +++ + ++ + + + Sbjct: 103 RLLLVEPDDGLADLLTAMLQTPYRQIHRVATAAEAQQWLQQQRSAHLIITELFLPDLDGR 162 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +RQ P + + L + GA+ L KPF+ L + L Q Sbjct: 163 SLILWIRQQPQTQQMPILVLSAHLSSAVKAECYALGADDVLEKPFDPAELSLIVASLLQR 222 >gi|149912107|ref|ZP_01900695.1| putative DNA-binding response regulator [Moritella sp. PE36] gi|149804813|gb|EDM64853.1| putative DNA-binding response regulator [Moritella sp. PE36] Length = 237 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++++ + GF V A E + P+ +V+D M G Sbjct: 5 KQILVVDDDVEIKELLSEYLDQAGFSVLTAGEGKE-MQRVLATNTPDLIVLDVMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + V + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 64 FTLCQKIR---RTSQVPIIMLTANSDEADRIVGLEIGADDYMAKPFSPRELLARIKALLR 120 Query: 120 MQKSKDENQ 128 Q Sbjct: 121 RSSYTKPTQ 129 >gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 231 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ GF A A+ + +LP+ +++D + Sbjct: 1 MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDA-VLPDVILLDWMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L R V + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKD 125 + + + + Sbjct: 120 AVLRRRAPEQ 129 >gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 233 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK--ELLPNYLVIDESMEG 58 M +LLVD + G+ V A + A E +K L N LV+D + Sbjct: 1 MARILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPE 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + R + + +L + + + G AGA+ +L+KPF L +R L Sbjct: 61 LSGLSLCQRVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALL 120 Query: 119 QM 120 + Sbjct: 121 RR 122 >gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family [Variovorax paradoxus EPS] gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family [Variovorax paradoxus EPS] Length = 230 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 5/135 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+V+ + ++ GF + A+ + LP+ +++D + G Sbjct: 1 MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDA-FLPDLILLDWMLPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 L+ R+ P + + L D +AG AGA+ ++ KPF+ + + +R Sbjct: 60 QSGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRA 119 Query: 117 LPQMQKSKDENQFLD 131 + + + + + ++ Sbjct: 120 VLRRRAPEVVTERVE 134 >gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 358 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + + G+ VF A S EA + + + P+ +V+D + G L Sbjct: 133 KILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALKKVDI-VQPDLIVLDLMLPGLSGL 191 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + V + L + + ++ G GA+ ++ KPF+ + L + + + Sbjct: 192 EVCKKIR---DSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRR 248 Query: 121 QKSK 124 + + Sbjct: 249 VQPE 252 >gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 225 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + + + GF EA +A + + + ++ID M + Sbjct: 6 KTVLIVDDEEDMRFLVKMYLENAGFSCLEAEDGDKALDVL-ANVKVDAVLIDIMMPKMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R +DV + +L + + G + G + +++KPF+ L + + + Sbjct: 65 FSLCERIRWQ---SDVPILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 233 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R+ + D F V A++ E E ++E +PN L+ D M Sbjct: 7 KILLVDDEPGLRESVQAYLEDSDFEVRVASNAQEGWELLQQE-IPNVLISDIMMPQVDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F+ VR+ + V +L I G +AGA+++L KPF+ E L + L + Sbjct: 66 QFLKQVREDARFQALPVVFLTARGMTSDRIQGYQAGADAYLPKPFDPEELVAIVTSLIER 125 Query: 121 QKSKDEN 127 + ++ + Sbjct: 126 RAAQAPD 132 >gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 1129 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + ++ G+ V E E+E P L++D M G+ Sbjct: 727 VADDEPVNLRILESFLRLEGYRVRTIADGPETLALIEQEK-PELLLLDIMMPGMSGYQVC 785 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ K+ Sbjct: 786 SKLREHFDHAELPIIMLTGMSQTEDRVKGFEAGANDYLTKPFNKQELAARIQAHLTASKA 845 Query: 124 KD---ENQFLDA 132 + EN+ L++ Sbjct: 846 EMRHIENKLLES 857 >gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + EA E P+ +++D + G+ Sbjct: 5 QRILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFP-EFRPHLVLLDLMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREMRS---ASQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RYQ 123 >gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family [Variovorax paradoxus S110] gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family [Variovorax paradoxus S110] Length = 230 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 5/135 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+V+ + ++ GF + A+ + LP+ +++D + G Sbjct: 1 MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDA-FLPDLILLDWMLPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 L+ R+ P + + L D +AG AGA+ ++ KPF+ + + +R Sbjct: 60 QSGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRA 119 Query: 117 LPQMQKSKDENQFLD 131 + + + + + ++ Sbjct: 120 VLRRRAPEVVTERVE 134 >gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 224 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + + G+ V A + E+ + +++D + + Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ V V + + + G GA+ +++KPF+ + + ++ + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117 Query: 119 QMQKSKDENQ 128 E + Sbjct: 118 SRTYGASEEE 127 >gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 233 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D +R + R + GF V EA++ E + + + +V+D M + Sbjct: 5 RVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTH-DVVVLDVMMPDMDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V + L + + + G GA+ +++KP + E L + L + Sbjct: 64 QVCKKMREIAP---VPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRR 120 Query: 121 QKSKD 125 + Sbjct: 121 SSHQA 125 >gi|294055133|ref|YP_003548791.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614466|gb|ADE54621.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 382 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD I+RK+ R + GF+V E+ S A + C E P+ +++D M+G+ F Sbjct: 13 RILVVDDDEIIRKLLRRVLERSGFIVDESDSGEAAIQ-CIVENQPDLILLDVVMDGIDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ M V + ++ D ++ G AG + ++ KP NR +R +M Sbjct: 72 ITCRKIKSMEGMESVPIIFVTGRSDTGSIVEGLDAGGSDYITKPINRHESLARIRNHLKM 131 Query: 121 QKSKD-ENQFLDAI 133 +K +++F+ + Sbjct: 132 RKLMQMQSEFISGL 145 >gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] Length = 229 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD ++ K R G V A EA + KE + +++D + Sbjct: 3 RRVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLA-KENAYDMILLDIMLPKHDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ +DV + L D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQQIRE---FSDVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDENQ 128 +D+ Q Sbjct: 119 RTSKRDKAQ 127 >gi|104783385|ref|YP_609883.1| two-component response regulator GltR [Pseudomonas entomophila L48] gi|95112372|emb|CAK17099.1| two-component response regulator GltR [Pseudomonas entomophila L48] Length = 240 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +R++ + GF V + + +++D + Sbjct: 6 KSILMVDDDQDIRELLQTYLARSGFQVHAEADG-QGFRRALDSSPCDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P + V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWVRQHPRLSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAE 127 >gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13] Length = 265 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R + R F GF V EA+ EA E + + ++D M + Sbjct: 45 KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIF-SENIVDLAILDIMMPKLDG 103 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++R++ ++ + L + E + G GA+ ++ KPF+ + L + L + Sbjct: 104 LAVCRNIREV---SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLR 160 Query: 120 MQKSKDENQFLD 131 + ++ LD Sbjct: 161 RTGTLNDKNILD 172 >gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 224 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + + G+ V A + E+ + +++D + + Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ V V + + + G GA+ +++KPF+ + + ++ + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117 Query: 119 QMQKSKDENQ 128 E + Sbjct: 118 SRTYGASEEE 127 >gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] Length = 252 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + GF V A A E P+ +V+D + + F Sbjct: 29 RLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTEN-PDLIVLDVMLPDMDGF 87 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R GT + V +L D I G G + ++ KPF E + +R + + Sbjct: 88 TVTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 145 >gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] Length = 236 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + EA + E PN +++D + G+ Sbjct: 5 QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFP-EFKPNLVLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V V L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCRELRAS---SQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQKS 123 ++ Sbjct: 121 RYQA 124 >gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] Length = 235 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + K+ + + GF T+ +A E E +++++D + + Sbjct: 3 KQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + + D + GA+ +L KPF+ L ++ + + Sbjct: 62 IEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121 Query: 122 KSKDE 126 K K E Sbjct: 122 KGKQE 126 >gi|159898013|ref|YP_001544260.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891052|gb|ABX04132.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 228 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL+D +R+V R G+ V EA++ EA E P+ +V+D M + Sbjct: 4 TILLIDDEAKLRQVIRLSLEQEGYRVVEASNGREALYRARIEK-PDLVVLDLMMPEMNG- 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ V L V+ I G GA+ ++ KPFN L +R + + Sbjct: 62 TEFLLAFSKESNTPVIMLTARVEDHDKIIGLELGADDYITKPFNMRELIARIRAVLRR 119 >gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L ++ + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis ATCC 14018] Length = 246 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA + E+ + P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIER-VHPDLIVMDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V +L D + I G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 123 SKDEN 127 DE+ Sbjct: 127 DPDED 131 >gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 237 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD VR V R G+ V A A E P+ +V+D + G L Sbjct: 13 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETAL-RLHAERKPDLVVLDLMLPGVGGL 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V V L + + G GA+ +++KPF+ L + + + Sbjct: 72 EVCRRLRERGE---VPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 128 Query: 121 QKSKDENQ 128 ++ + Sbjct: 129 ARTSQPAE 136 >gi|187921731|ref|YP_001890763.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187720169|gb|ACD21392.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 1646 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LL+VD + +R+ + G V A+ + P+ ++ D M Sbjct: 659 RLLVVDDNADLREYMSRILRAAGHDVRLASDGQA-ALEAARAEAPDLVLSDVMMPRLDGF 717 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P D V L E + G GA+ +L KPF+ L + Q+ Sbjct: 718 GLLRALRADPHLRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVSGNLQL 777 Query: 121 QKSKDENQF 129 + + E + Sbjct: 778 ARLRRETEM 786 Score = 85.2 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 13/139 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 ++L V+ VR + +D G+ V +A A E + + L D M G L Sbjct: 1376 TILAVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDMLFTDVVMPGPLRS 1435 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118 E + + V + D + +G G L KP+ E L +R + Sbjct: 1436 TELAR--KARERLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKVRYVL 1492 Query: 119 QMQK------SKDENQFLD 131 Q Q ++ E L+ Sbjct: 1493 QAQNPQAAEIAEAEQHLLE 1511 Score = 62.5 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ ++R L F F + EA +A + E + ++ D + G Sbjct: 1531 RILLVEDDELIRVSTAELLRTFDFDILEAEGEHDA-KQILSEHAISVMLTDVGLAGKSGV 1589 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + D+ V +L A + KP++ L A++ + Sbjct: 1590 DLALDVCRERPDLRVIFLTGYDLVLTPAQRAVLPHAM-LMRKPYDPLDLIDALKTPLR 1646 >gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium kansasii ATCC 12478] Length = 240 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A++ +A + +E P+ +++D M G+ F Sbjct: 15 RILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRA-REARPDAVILDVMMPGMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 74 GVLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 123 ---SKDENQFL 130 ++ N L Sbjct: 134 KGSAEPRNSRL 144 >gi|228957071|ref|ZP_04118843.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802604|gb|EEM49449.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 225 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|91789740|ref|YP_550692.1| multi-sensor signal transduction histidine kinase [Polaromonas sp. JS666] gi|91698965|gb|ABE45794.1| multi-sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 1003 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D + +R L + V EA ++ P+ ++ D M L Sbjct: 643 RVLVADDNRDLRTFLSSLLAPH-YDVQVVADGREALAAI-QQRKPDLVLSDVMMPNLDGL 700 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ P + V L E + G AGA+ +L KPF + L +R M Sbjct: 701 GLVRALREDPETRTLPVILLSARAGQEASLEGLSAGADDYLAKPFTSQELLARVRTHLTM 760 Query: 121 QKSKDE--------NQFLDA 132 +++DE N+ L+A Sbjct: 761 ARARDELNTELMHANEELEA 780 >gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + ++ + + G+ V A++ E + +KE P+ +++D M + Sbjct: 7 KILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEK-PHLIILDVMMPEMDGI 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++P + + +L + +AG AGA+ ++ KP + L ++ L + Sbjct: 66 EACEQIRKVPELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALLRR 125 Query: 121 QKSKDEN 127 K+++ N Sbjct: 126 LKAEEGN 132 >gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 239 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 54/133 (40%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD ++ + + GF V A +A + ++ + +++D + Sbjct: 1 MTKVLVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQK-IDIVLLDIMLPEES 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +R + + L D + G GA+ ++ KPF+ + + + Sbjct: 60 GVDVTRELRAEKN--QIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVL 117 Query: 119 QM--QKSKDENQF 129 + QK++ E + Sbjct: 118 RRFSQKTQTEKEQ 130 >gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA regulates genes involved in folding/degrading periplasmic proteins OmpR family protein [Xenorhabdus nematophila ATCC 19061] gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila] gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 230 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + L GF V A +A ++ + + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALQYIDSS--IDLLLLDIMMPRKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 59 GIETLKELRQ---YHQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 Query: 119 QMQKSKDEN 127 + ++ Sbjct: 116 RRSNWSEQQ 124 >gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 232 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + + R+ G+ V A + + ++ P+ +V+D + + Sbjct: 1 MATVLIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRD-QPDLVVLDIMLPRLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ +DV + L D IAG GA+ ++ KPF+ +R + Sbjct: 60 GFSVCRILRQE---SDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAIL 116 Query: 119 QMQKSK 124 + + + Sbjct: 117 RRSERQ 122 >gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 224 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+ D +RK+ G+ + EA +A + + +++D M G Sbjct: 5 KILIADDEARMRKLVADFLKKEGYAIIEAADGRQALDLFYGNNDIDLIILDVMMPGYDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + + G GA+ ++ KPF+ + L ++ L + Sbjct: 65 TVCREIRKS---SQVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRR 121 Query: 121 QKSKDENQFLDAI 133 ++ + D + Sbjct: 122 VQNNRTVRSFDGL 134 >gi|295108248|emb|CBL22201.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 224 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 7/123 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + F G++V+ A + EA K P+ +++D +M + Sbjct: 3 QSILIVDDEKDIVSMLNQYFYKIGYVVYTAINGKEALNAITKN--PDIILLDINMPDMNG 60 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + +L V+ I G GA+ +++KPF+ + L + + Sbjct: 61 FTVCEAIRN---YVSCPIIFLTARVEDCDKIKGFAIGADDYVVKPFSIDELEARVAAHLR 117 Query: 120 MQK 122 +K Sbjct: 118 REK 120 >gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD VR R + G+ + A +A + EKE P+ +++D M + Sbjct: 1 MK-IVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKE-QPDLVILDVMMPKMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 H+R G D + L +AG AGA+ +L KPF E L +R L Sbjct: 59 GLEVCRHLRSH--GDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLL 116 Query: 119 QMQKSKD 125 + ++ Sbjct: 117 RRAAAEA 123 >gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 234 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ GF+V A EA + E P+ +++D + G + Sbjct: 5 RILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEA-DLRLHETTPDLVLLDWMVPGLSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + V L + + G GA+ +++KPF+ L +R L + Sbjct: 64 ELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLRR 123 Query: 121 QK 122 K Sbjct: 124 AK 125 >gi|159897134|ref|YP_001543381.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159890173|gb|ABX03253.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 355 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD S R + + + V A + +A ++ + + +++D M + F Sbjct: 7 RILVVDDSEDNRYLLQRQLLRRNYGVVLAENGQQALDYVQSHT-IDLILLDIMMPVMNGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++Q + V + D E ++ G + GA +L KPFN LR + + Sbjct: 66 EVLQNLKQNEQLRHIPVIIVSAADDMENVVKGIQMGAEDYLAKPFNTTLLRARIEASLEK 125 Query: 121 QKSKDENQ-FLDAI 133 ++ D+ Q +L AI Sbjct: 126 KRLHDQEQAYLQAI 139 >gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum gilvum SL003B-26A1] gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1] Length = 231 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + + R+ G+ V EA E +E P+ L++D + G Sbjct: 1 MPKVLIVEDEEPLSLLLRYNLEAEGYAVEACERGDEA-EIRLRESQPDLLLLDWMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + V L + + I G GA+ +++KPF+ L +R + Sbjct: 60 GIELCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAIL 119 Query: 119 QMQKSK 124 + + + Sbjct: 120 RRARPE 125 >gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 228 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D + R + G+ V A + E + P+ +++D M + Sbjct: 6 ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSN-APDLVILDWLMPDMDGIE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R ++ + L + + + G AGA+ +L+KPF E L ++ L + Sbjct: 65 VCKRLRSAD---NIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRR 120 >gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 236 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD + + + G+ V A EA E E+ P+ +++D + Sbjct: 3 RTILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVE-EIQPDLILLDIMLPLKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMR 118 Query: 120 MQ 121 Sbjct: 119 RH 120 >gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W] gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W] Length = 225 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601] Length = 233 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEFIA 64 VD +R++ + G+ V A EA E K P+ +V+D M Sbjct: 2 VDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAD-PDLVVLDVMMPKLDGYGVCQ 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 61 ELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113 >gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] Length = 246 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E E+ + PN +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIER-VNPNLIVMDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V +L D + I G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 123 SKDEN 127 DE Sbjct: 127 EPDEE 131 >gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family [Prosthecochloris aestuarii DSM 271] Length = 236 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ H + K+ ++ G+ A S EA + + + + +++D + G+ F Sbjct: 6 ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSY-DIMLLDIMLPGMDGFE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 VRQ L D+ + L + + + G G + +++KPF+ L +R + + Sbjct: 65 VCRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRD 124 Query: 121 QKSKDENQ 128 ++ K E Q Sbjct: 125 RRGKREIQ 132 >gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] Length = 246 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E E+ + PN +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIER-VNPNLIVMDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V +L D + I G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 123 SKDEN 127 DE Sbjct: 127 EPDEE 131 >gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 230 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 59/125 (47%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ + +R++ + V+EA + EA + K + ++D M G+ F Sbjct: 2 NILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKND-IDLAILDIMMPGLDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ +++ V ++ + E I G GA+ +++KPF+ + ++ L + Sbjct: 61 -KVLKKIREKSNIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRRVG 119 Query: 123 SKDEN 127 + +N Sbjct: 120 TYSQN 124 >gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 233 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + ++ G+ V A + +A + +LP+ +++D + G Sbjct: 1 MSRVLVVEDESAIAELISINLRHAGYEVTIAATADQA-QLAIDSVLPDLVILDWMLPGQS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L R ++ V L + +AG AGA+ +L KPF+ L +R + Sbjct: 60 GLALAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVL 119 Query: 119 QMQKSKDENQFLD 131 + + + + ++ Sbjct: 120 RRKAPEALDSAVE 132 >gi|315922180|ref|ZP_07918420.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313696055|gb|EFS32890.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1322 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + R+ + + V+EA++ EA E E + +V D M G+ Sbjct: 1074 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEA-EAIANEKEVDIIVSDVMMPGMDG 1131 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ + +F+ L E +AG ++GA+ +L KPFN + L+ ++ L Sbjct: 1132 FELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLLA 1191 Query: 120 MQKSKDE 126 +Q+ + + Sbjct: 1192 LQQKRKQ 1198 >gi|260173915|ref|ZP_05760327.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1308 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + R+ + + V+EA++ EA E E + +V D M G+ Sbjct: 1060 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEA-EAIANEKEVDIIVSDVMMPGMDG 1117 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ + +F+ L E +AG ++GA+ +L KPFN + L+ ++ L Sbjct: 1118 FELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLLA 1177 Query: 120 MQKSKDE 126 +Q+ + + Sbjct: 1178 LQQKRKQ 1184 >gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781] gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763] gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719] gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781] gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763] gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719] gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] Length = 244 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA++ EA E + +++D + + Sbjct: 8 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + L + + + G +GA+ +++KPF+ + ++ L + +S Sbjct: 67 VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125 >gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268] gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268] Length = 244 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ + EA + EKE + +++D + G Sbjct: 5 QKILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPV-ALIILDLMLPGIDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R ++V + L + + + G GA+ ++LKPF+ + L ++ + + Sbjct: 64 YEVCRRIR---TSSNVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RSQ 123 >gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 247 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ + GF+ T A E+E +++V+D + + Sbjct: 10 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPY-DFIVLDIMLPQLDG 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G+ + + + D + GA+ ++ KPF+ L ++ + + Sbjct: 69 IEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 128 Query: 122 KSK 124 +++ Sbjct: 129 EAE 131 >gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 234 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A + +A + + E P +++D + G+ F Sbjct: 5 KILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAEN-PKLILLDLMLPGLDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V++ ++ + L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 DVCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 >gi|126031096|pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D53a And Y102c Length = 127 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ + GF EA A E P+ +++ + G Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLAWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ + KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 230 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA + P+ +V+D M + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLI-ANNRPDAVVLDVMMPRLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D+ + L + +AG AGA+ +L KPF E L MR L + Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|24987831|pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus Subtilis Length = 136 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A+ EA + E E P+ +V+D + Sbjct: 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ L + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 120 Query: 120 MQKSKD 125 + + Sbjct: 121 RSEIRA 126 >gi|163849322|ref|YP_001637366.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527316|ref|YP_002571787.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] gi|163670611|gb|ABY36977.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222451195|gb|ACM55461.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] Length = 390 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +LL+VD V ++ + G+ V A S EA + K LP+ L+ D + G Sbjct: 1 MKPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN-LPDALICDVLLPG 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + VRQ PL + + L + D IAG AGAN +L KPF + L + ++ Sbjct: 60 IDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKN 119 Query: 117 LPQM 120 + Sbjct: 120 ILAR 123 >gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + + + G+ V A + E ++ + L++D + Sbjct: 1 MK-ILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNY-DLLILDWMLPQQS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ ++R G V +L + + +AG AGA+ +L+KPF L +R L Sbjct: 59 GLQICQYLRNQ--GDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|153835385|ref|ZP_01988052.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] gi|148868087|gb|EDL67256.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] Length = 1128 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V + E E+E P L++D M G+ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEK-PELLLLDIMMPGMSGYQVC 784 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ ++ Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQA 844 Query: 124 KD---ENQFLDA 132 + EN+ L++ Sbjct: 845 EMRHIENKLLES 856 >gi|299147450|ref|ZP_07040515.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298514728|gb|EFI38612.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1459 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 59/128 (46%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ ++ +R ++ ++ + V EA + E ++ ++ +P+ ++ D M + Sbjct: 1196 TSILIVEDNNELRHFLWNILSET-YTVLEAANGKEGLKYA-QQYIPDLIISDVMMPVMDG 1253 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1254 LDMVKAIKADHNTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTRILSLLR 1313 Query: 120 MQKSKDEN 127 +K E Sbjct: 1314 QRKQLQEL 1321 >gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae NTUH-K2044] gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] Length = 238 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + + R D G+ + +A E + + + +++D + GV Sbjct: 3 KTILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQ-VWDAVILDLMLPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + V + + G GA+ +L KPF+ L ++ L + Q Sbjct: 62 LEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQ 121 Query: 122 KSKDENQFLDA 132 ++ +N +DA Sbjct: 122 EAMGQNLLMDA 132 >gi|28199836|ref|NP_780150.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71275218|ref|ZP_00651505.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71899561|ref|ZP_00681717.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170731213|ref|YP_001776646.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182682586|ref|YP_001830746.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|28057957|gb|AAO29799.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71164027|gb|EAO13742.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71730690|gb|EAO32765.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167966006|gb|ACA13016.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182632696|gb|ACB93472.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578868|gb|ADN62837.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 231 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + F +A+ EA + + +P+ +++D + G Sbjct: 3 KRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREA-QAVIADCVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE R+ L ++ + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + +E+ Sbjct: 122 RTRDDEED 129 >gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 227 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + GF V +A +E P+ +++D + G+ F Sbjct: 4 RILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQF-QEHHPDLVLLDVMLPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +DV + L D ++ G AGA+ ++ KPF + L +R + Sbjct: 63 DVCRAIR---HVSDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119 Query: 121 QKSKDENQ 128 + ++ Sbjct: 120 RDDNQADE 127 >gi|87302949|ref|ZP_01085753.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87282445|gb|EAQ74404.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 298 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++ +VD +R++ D G+ V T + E + P+ +V+D + G Sbjct: 63 TIWVVDDDPELRQLLGTYLTDQGYEVRCLTDGRQLMARLEFQ-RPDLVVLDLMLPGDDGL 121 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D+ V L + I G GA+ +L KPF L + + + + Sbjct: 122 TLLRRLRDSSDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFLPRELMARIEAVLRRR 180 >gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius nubinhibens ISM] gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius nubinhibens ISM] Length = 221 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 +LV+ R + + GF V A + EA E+ P+ +V+D + +E Sbjct: 1 MLVEDEPAQRDILTYNLEADGFEVAAAENGEEAL-LLVDEVSPDIIVLDWMLPNVSGIEV 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ V + L + + G GA+ +++KP++ L +R + + Sbjct: 60 CRQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRRTR 119 Query: 123 SKDENQFLD 131 L+ Sbjct: 120 PAAMGARLE 128 >gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LL+VD ++ K R+ G+ + A+ EA + K + +++D + L Sbjct: 4 KLLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGS-FDLIILDLMLPKIDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + + L + + I G GA+ ++ KPFN L+ ++ + + Sbjct: 63 EVCQTIRQ---TSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRR 119 Query: 121 QKSKDEN 127 +SK+ N Sbjct: 120 AQSKEGN 126 >gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 227 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ GF A EA + P +++D + G+ F Sbjct: 5 SILIVEDDEDIVELLAFNLQSAGFATETAKDGYEALTKARRTP-PAGIILDLMLPGLDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + L + I G GA+ +++KPF+ L +R + + Sbjct: 64 EVCKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123 Query: 121 QKSKDENQF 129 + E + Sbjct: 124 HAPETEKRQ 132 >gi|237711528|ref|ZP_04542009.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454223|gb|EEO59944.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1379 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R + LF+ + + A + E KE +P+ ++ D M + F Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKE-IPDLVITDVMMPIMNGF 1176 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L D E ++ G GA+ ++LKPFN E LR ++ L + Sbjct: 1177 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIKS 1236 Query: 121 QKSKDE 126 + + Sbjct: 1237 RTELKQ 1242 >gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] Length = 237 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T++ + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185] gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W] gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W] gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185] Length = 225 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 228 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+++ +R + + + + EA + +A + K+ P+ +++D + + Sbjct: 1 MEKILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQLVKQ--PDLVILDLMLPDID 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + + + I G GA+ ++ KPFN + ++ Sbjct: 59 GLSICKSIRKKYYY---PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQL 115 Query: 119 QMQKSKDEN 127 + K DEN Sbjct: 116 RRYKQYDEN 124 >gi|156975687|ref|YP_001446594.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116] gi|156527281|gb|ABU72367.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116] Length = 1128 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V + E E+E P L++D M G+ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEK-PELLLLDIMMPGMSGYQVC 784 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ ++ Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQA 844 Query: 124 KD---ENQFLDA 132 + EN+ L++ Sbjct: 845 EMRHIENKLLES 856 >gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49] gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49] Length = 239 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 7/129 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + ++ G+ V A + E E +KE P+ +++D M Sbjct: 13 MKKKDIKILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEK-PHLIILDVMM 71 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R +P ++ + +L + +AG AGA+ ++ KP + L + Sbjct: 72 PEMDGIEACEKIRSIPELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKV 131 Query: 115 RELPQMQKS 123 + L + KS Sbjct: 132 KALLRRFKS 140 >gi|71899946|ref|ZP_00682093.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71730309|gb|EAO32393.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] Length = 231 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R + + F +A+ EA + + +P+ +++D + G Sbjct: 3 KRVLIVDDEVAIRDMVAYALRKGEFESLQASDAREA-QAVIADCVPDLILLDWMLPGTSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE R+ L ++ + L + + G AG + +++KPF+ L +R + + Sbjct: 62 LELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMR 121 Query: 120 MQKSKDEN 127 + +E+ Sbjct: 122 RTRDDEED 129 >gi|332828802|gb|EGK01494.1| hypothetical protein HMPREF9455_02327 [Dysgonomonas gadei ATCC BAA-286] Length = 1473 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ +R+ ++ + + V +A E + +P+++V D M + Sbjct: 1215 TILVVEDDSDLRRFIVNILEPY-YNVLDAADGKEGYDKAVAN-VPDFIVSDIMMPEMDGT 1272 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + V L + D E + GA+ ++ KPF+ + LR + + + Sbjct: 1273 ELLQKIRSTTEISHIPVILLTAKTDMESKLDSLDYGADDYITKPFSVKYLRARIENIIRQ 1332 Query: 121 QK 122 +K Sbjct: 1333 RK 1334 >gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 242 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 134 RRTNQHAQIQ 143 >gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] Length = 232 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] Length = 233 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F + +A E PN +++D + G+ Sbjct: 5 QRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFET-YEPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V + L + + + G GA+ ++LKPF+ + + +R + + Sbjct: 64 YQVCREIRAKSG---VPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLR 120 Query: 120 MQK 122 Sbjct: 121 RYH 123 >gi|75907014|ref|YP_321310.1| response regulator receiver domain-containing protein [Anabaena variabilis ATCC 29413] gi|75700739|gb|ABA20415.1| Response regulator receiver domain protein (CheY) [Anabaena variabilis ATCC 29413] Length = 125 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLVD + + + G+ V A + K+ +P+ +++D + Sbjct: 1 MPHVLLVDDEVALCESLAYTLQKEGYTVTTVADGQSAIKQFHKQ-VPDVILLDLMLPEVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R +DV + L + I G AGA+ ++ KPFN L ++ + Sbjct: 60 GMEVCWRIRA---FSDVPIVMLTAKDQDIDKIWGLEAGADDYVTKPFNTRELLARIKAVL 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 RRRAGEQ 123 >gi|332705093|ref|ZP_08425175.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332356043|gb|EGJ35501.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 428 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + KV + G+ + AT A + E P+ +++D M + F Sbjct: 10 TILIVDDNPTNLKVLSEAIANSGWEILVATDGETAIDQSEYAT-PDLILLDVIMPVMDGF 68 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P ++ V ++ D I G GA ++ KPF E + ++ Q+ Sbjct: 69 ETCRRLKSNPATNEIPVIFMTALNDTVDKIKGLSLGAVDYITKPFQTEEVLARLKVHLQL 128 Query: 121 ----QKSKDENQFLDA 132 ++ +D+N +L+ Sbjct: 129 HFLTKQLEDQNLYLEE 144 >gi|228937889|ref|ZP_04100517.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228977345|ref|ZP_04137740.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782322|gb|EEM30505.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228821795|gb|EEM67795.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938368|gb|AEA14264.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 225 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFK-FVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 242 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF + A + E + + P+ ++ D M Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIIIAVDGEDGWEKAQT-IFPDLIISDVMMPRANGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R+ V +L + G AG + ++ KPF+ + L ++ + Sbjct: 75 DLLKKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 Query: 121 Q-KSKDENQFLDAI 133 Q + E I Sbjct: 135 QERLLKEAARFADI 148 >gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V KV G+ VF AT+ EA E ++ P+ +V+D + + F Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDS-PDLIVLDVMLPKMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 64 AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120 >gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 6/135 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + GF V A EA E E P ++++D + Sbjct: 3 KKVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAE-RPEFIILDLMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + L + D I G GA+ ++ KPF+ + ++ + + Sbjct: 62 VEVCKQLRQQKVM--TPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQK-SKDENQFLDAI 133 + S E + +D I Sbjct: 120 RTQFSNGETEAIDKI 134 >gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] Length = 232 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 MD LL+++ +R R L + G+ + EA E + + + L+ID M Sbjct: 1 MDKLLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQKFDST--FDLLIIDIMMPNIS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R+ + V + +L + + AG + +L+KPF+ L ++ L Sbjct: 59 GIEVCRRIREK---SYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALI 115 Query: 119 QMQKSKD 125 + + D Sbjct: 116 RRCRVYD 122 >gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 269 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R + R F GF V EA+ EA E + + ++D M + Sbjct: 49 KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIF-SENIVDLAILDIMMPKLDG 107 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++R++ ++ + L + E + G GA+ ++ KPF+ + L + L + Sbjct: 108 LAVCRNIREV---SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLR 164 Query: 120 MQKSKDENQFLD 131 + ++ LD Sbjct: 165 RTGTLNDKNILD 176 >gi|123965391|ref|YP_001010472.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123199757|gb|ABM71365.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 260 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M S+LL++ +R++ GF V +A + + + P+ +++D + Sbjct: 1 MKISILLIEDDRDMRELVAGHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L +R+ +++ + + + + G +GA+ ++ KPF+ E L ++ L Sbjct: 60 DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119 Query: 118 PQMQKSKDEN 127 + N Sbjct: 120 LRRTNRAQLN 129 >gi|154253256|ref|YP_001414080.1| response regulator receiver modulated diguanylate cyclase [Parvibaculum lavamentivorans DS-1] gi|154157206|gb|ABS64423.1| response regulator receiver modulated diguanylate cyclase [Parvibaculum lavamentivorans DS-1] Length = 457 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F VF+A S EA E KE P+ +++D M G+ F Sbjct: 4 RVLIVDDVPANLKLLDAKLTAEYFDVFKAASGPEALEAA-KEQQPDIILLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ MP + V + + + G AGA+ FL KP N L +R L ++ Sbjct: 63 EVCRRLKAMPETEHIPVVMVTALDQPKDRVQGLEAGADDFLTKPLNDLALFARVRSLVRL 122 Query: 121 QKSKDENQFLDA 132 + DE + +A Sbjct: 123 KMVTDELRMREA 134 Score = 85.6 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVLE 61 +L +D K V A + E + + + + L Sbjct: 157 RILAIDDRPTSLKRITETLASE-HNVTVAETQEELLQLANSGNFDLHIVSLTLQEFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + ++ E D +++ G N +L++P R L R + + Sbjct: 216 LCSQLRSLEATRQTPILAIVEEGDTGRLVRALDMGVNDYLVRPVERNELVARARSQLRRK 275 Query: 122 KSKD 125 + +D Sbjct: 276 RYQD 279 >gi|186682033|ref|YP_001865229.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464485|gb|ACC80286.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 421 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + V N GF A A E+ P +++D M G+ F Sbjct: 10 ILIVDDNPTNLSVLCAALNSEGFRFRVAVDGETAIAQAERN-QPELILLDVQMPGIDGFE 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P ++ + + D E G GA ++ KPF +E + +R Q++ Sbjct: 69 TCRRLKANPATQNIPIIFTTALADTESKTKGFSLGAVDYIPKPFAQEEVIARVRVHLQLK 128 Query: 122 KSKDENQF 129 K + + Sbjct: 129 KLTESLEQ 136 >gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V KV G+ V+ AT+ EA E ++ P+ +V+D + + F Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDS-PDLIVLDVMLPKMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 64 AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120 >gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 297 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + ++ L + GF V A + E + +++ P+ +++D + G Sbjct: 65 RTILVVDDDPEIGRLVAALLSREGFDVRTAENGME-LDDVLRKVRPDLIILDLMLPGEDG 123 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + L + D + G GA+ ++ KPF L +R L + Sbjct: 124 LSICRRMRSEGAF---PILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALLR 180 Query: 120 MQKSK 124 +S+ Sbjct: 181 RTQSQ 185 >gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 234 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 6/116 (5%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEFIA 64 VD +R++ + G+ V A EA E P+ +V+D M Sbjct: 2 VDDEASIRRILETRLSMIGYEVVTAADGEEAIATF-HESDPDLVVLDVMMPKLDGYGVCQ 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 61 ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113 >gi|293368763|ref|ZP_06615367.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292636068|gb|EFF54556.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1343 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQA-SSLQPQMIVSDIMMPVMSGL 1149 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1150 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1209 Query: 121 QKSKDE 126 +K + Sbjct: 1210 RKLLQQ 1215 >gi|237712721|ref|ZP_04543202.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229447235|gb|EEO53026.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1026 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R L + ++V ++ +A +E P+ ++ D M + Sbjct: 780 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 837 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A V+ + + V L D + M+ G GA++++ KPF+ LR +R + Sbjct: 838 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 897 Query: 120 MQKSKDE 126 + Sbjct: 898 NRALLRR 904 >gi|237726015|ref|ZP_04556496.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435823|gb|EEO45900.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1379 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R + LF+ + + A + E KE +P+ ++ D M + F Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKE-IPDLVITDVMMPIMNGF 1176 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L D E ++ G GA+ ++LKPFN E LR ++ L + Sbjct: 1177 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIKS 1236 Query: 121 QKSKDE 126 + + Sbjct: 1237 RTELKQ 1242 >gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1172 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD + +R + F V A E EF E P+ ++ D M Sbjct: 814 TTILVVDDNPDLRNYVSRILRKSNFNVVLARDGAEGFEFAEIHH-PHVIITDLMMPVVSG 872 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ I +R+ + L + D + I G GA+++L KPFN L +R L Sbjct: 873 LDLIKMIREEKQLRGTPIILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLLV 932 Query: 120 MQKSKDENQFLD 131 +++++ Q L+ Sbjct: 933 LKENERHMQELN 944 Score = 96.4 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 13/144 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + F + V A EA E EK ++ D+ M + Sbjct: 10 TKILVVDDEPYNLDLLYRTF-FQNYKVLRAEGGSEALEVLEKSGEVAVIISDQRMPKMSG 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMR----- 115 + L D E ++ +G ++ KP++ L+ ++ Sbjct: 69 TEFLSLTAEKYPNTIRIILTGYTDVEDLVEAINSGKVFKYVTKPWDDHELKALVKQGVDT 128 Query: 116 -ELP-----QMQKSKDENQFLDAI 133 + +++++ + L A+ Sbjct: 129 HNVLKSHTEELRRALQQESLLYAV 152 >gi|294776618|ref|ZP_06742087.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294449533|gb|EFG18064.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1441 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ + +R+ + + + V A E E+E +P++++ D M + Sbjct: 1185 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEE-IPDFIITDIMMPRMDGI 1242 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I H+++ D+ + L + E I G + G + ++ KPF+ + L+ + L + Sbjct: 1243 ELIRHIKENVNTCDIPLIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1302 Query: 121 QK-----------SKDENQFLDAI 133 +K ++ + + L+AI Sbjct: 1303 RKVLQSAFLSKYGAQPKKEPLEAI 1326 >gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 234 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F EA + E + PN +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFE-QYSPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR +V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREVRAKA---NVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RYQ 123 >gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 246 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + G+ + +A + + +L P+ +++D + V Sbjct: 1 MPRILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKG-QALAVQLQPDLIMLDLMLPKVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V L + + G AGA+ +L KPF + +R L Sbjct: 60 GFTVCQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003] Length = 243 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK + P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D V +L D + I G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|148546293|ref|YP_001266395.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148510351|gb|ABQ77211.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 260 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +R++ + + GF V + + +++D + Sbjct: 25 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGK-GFRHALETTPCDLVILDVMLPDEDG 83 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 84 FSLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 143 Query: 120 MQK 122 + Sbjct: 144 RSE 146 >gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 229 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA E P+ LV+D M + Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMI-ASDRPDALVLDVMMPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L MR L + K Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 123 SKDEN 127 DE+ Sbjct: 121 PDDED 125 >gi|167032026|ref|YP_001667257.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166858514|gb|ABY96921.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 241 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +R++ + + GF V + + +++D + Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGK-GFRRALESTPCDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAE 127 >gi|32491287|ref|NP_871541.1| DNA-binding transcriptional regulator CpxR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166494|dbj|BAC24684.1| cpxR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 231 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ LLLVD + + + L GF + A + +A + L++D M Sbjct: 1 MNKLLLVDDDKELISLLKELLEKEGFEIQVAYNGEQALSKL--NDTIDLLLLDIIMPKKN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +R+ + + L I G GA+ ++ KPFN+ L ++ + Sbjct: 59 GIDTLKEIRKNK--QHLPIIMLTARGSELDKIIGLELGADDYISKPFNKRELVARIKAIL 116 Query: 119 QMQKSKDE 126 + ++ Sbjct: 117 RRSYLFNQ 124 >gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum] gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR R + G+ V A +A E +KE P +++D M G+ Sbjct: 2 KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKE-QPALVILDVMMPGMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G D + L + + G AGA+ +L KPF E L +R L + Sbjct: 61 EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 118 >gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 236 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + + GF A + E E P+ +++D + G + Sbjct: 4 NILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLMLPGVSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + V L + + G AGA+ +++KPF L +R + + Sbjct: 64 EVCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAILRR 123 Query: 121 QKSKD 125 + + Sbjct: 124 VQPEQ 128 >gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712] Length = 269 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 2/116 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ V +V G V A EA E + +V+D + G+ Sbjct: 12 RILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRA-AERWADLIVLDLMLPGLDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R G V V L D E I G GA+ ++ KPF+ L + + Sbjct: 71 EVCRRLRATGP-VPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVL 125 >gi|325971498|ref|YP_004247689.1| transcriptional regulator [Spirochaeta sp. Buddy] gi|324026736|gb|ADY13495.1| two component transcriptional regulator, winged helix family [Spirochaeta sp. Buddy] Length = 224 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L+V+ +R++ R+ G+ V EA +A + + + + +++D M + Sbjct: 1 MNTILVVEDDSDIRELERYTLTSNGYAVLEAEHGKQALQVLGTQTV-DLIILDIMMPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 FI +R L + + + D +I GA+ +L KPF+ L +R + Sbjct: 60 GLSFIKTLR-FSLNDTTPIIVVSAKGDESDIITALELGADDYLTKPFSMNVLSSKIRAVL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|265752955|ref|ZP_06088524.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236141|gb|EEZ21636.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1379 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R + LF+ + + A + E KE +P+ ++ D M + F Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKE-IPDLVITDVMMPIMNGF 1176 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L D E ++ G GA+ ++LKPFN E LR ++ L + Sbjct: 1177 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIKS 1236 Query: 121 QKSKDE 126 + + Sbjct: 1237 RTELKQ 1242 >gi|229590586|ref|YP_002872705.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas fluorescens SBW25] gi|229362452|emb|CAY49358.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25] Length = 409 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+VD VRK+ L G+ A S EA + ++ P+ +++D M G+ Sbjct: 7 TLLIVDDEPQVRKLLETLLQHEGYQTLTAGSGEEALQLVAQQP-PDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + + L + + G AGA F+ KP R L +R L ++ Sbjct: 66 EVASQLKGDETTAGIPIIMLSALSEPSARVNGLEAGAEEFISKPVERVELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] Length = 234 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F EA + E + PN +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFE-QYNPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR +V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREVRAKA---NVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RYQ 123 >gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] Length = 240 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V AT+ +A + +E P+ +++D M G+ F Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 74 GVLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 123 ---SKDENQFL 130 ++ N L Sbjct: 134 KGSAEPRNSRL 144 >gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + G V++A +A E+ P +++D + G+ Sbjct: 1 MARVLVVEDEVAICNLICAELSAEGHTVYQANDGLQALTLVEQH-QPQLIILDWMLPGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR L + + L + I G GA+ ++ KPF+ L +R + Sbjct: 60 GLSVCRRVRLNYL---MPILMLTARNEEIDRILGLEVGADDYISKPFSMRELMARVRAIL 116 Query: 119 QMQKSKDENQFLD 131 + D +Q L Sbjct: 117 RRV---DLDQRLA 126 >gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 234 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ ++ + V A EA + +KE P+ +++D + G + Sbjct: 5 KILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEK-PSLILLDLMLPGISGM 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +++ + L + D I G GA+ ++ KPF+ L ++ + + Sbjct: 64 EVCKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLRR 123 >gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] Length = 268 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR+V G+ V A EA + P+ +V+D + + F Sbjct: 25 TVLIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIF-HQDQPDLIVLDVMLPKLDGF 83 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 84 AVCRRLRAESC---VPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140 >gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] Length = 230 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + R GF V A KE + +++D + GV Sbjct: 3 KRILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEE-FDLIILDLMLPGVDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VR + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 62 FEICREVRSQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLS 118 Query: 120 MQK 122 + Sbjct: 119 RYE 121 >gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + G+ V A + + + +++D + G+ Sbjct: 1 MTRILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGA-DLVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V V L + D + G GA+ ++ KP++ L ++ + Sbjct: 60 GTEVCREIR---RTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVL 116 Query: 119 QMQKSKDENQ 128 + + E + Sbjct: 117 RRRHDSGEAE 126 >gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 226 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|218781907|ref|YP_002433225.1| cyclic nucleotide-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218763291|gb|ACL05757.1| cyclic nucleotide-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 884 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD I V + + V A + EA + + P+ +++D M + F Sbjct: 7 KILIVDDEKIHISVLTKFLSG-DYDVSIALNGAEALMRAKADPPPDLILLDVMMPEMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V +L + D E G GA F+ KPF L +R M Sbjct: 66 EVCRRLKSDKSLKSIPVIFLTTKDDEENTARGFELGAVDFIRKPFRPAVLSARIRTHLAM 125 Query: 121 QKSKDENQF 129 K + Sbjct: 126 SNQKQLLEQ 134 >gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 225 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ LL++D + K + + GF V A + + + +++D + + Sbjct: 1 MEKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNY-DLVILDIMLPKLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R +++ + L D I G GA+ +L KPFN L +R L Sbjct: 60 GFSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALL 116 Query: 119 QMQ-----KSKDENQF 129 + K KDE + Sbjct: 117 RRATNPYIKRKDEIRR 132 >gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 251 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LL+VD +R + G+ V A + +A + + P+ +++D ++ G Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHD-PDLILLDVNLPDLGGF 86 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R G V V +L + + G G + F+ KPF + + +R L + Sbjct: 87 EVCRTLR--DRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRR 144 >gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 233 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD + + + GF V A E EK+ +V+D + + Sbjct: 4 KVIVVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAV-LIVLDLMLPEMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L + D + G GA+ +L KPF+ + ++ + + Sbjct: 63 EVCKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRSA 122 Query: 123 SKD 125 ++ Sbjct: 123 PQE 125 >gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704] gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704] Length = 235 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R+ G+ VF+A E + EKE + ++D M + Sbjct: 3 MNHVLIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEE-IHLAIVDVMMPRMD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D V +L + + I G GA+ ++ KPF L + + Sbjct: 62 GIQMTIKLREKY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRR 120 Query: 121 QK--SKDENQF 129 + ++ NQ Sbjct: 121 YRKFAEKLNQR 131 >gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 230 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R GF+V EA +A + + + +++D + + + Sbjct: 6 RILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMI-SSVSYDLIILDLMLPVIDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + D V L + + G GA+ +++KPF+ L ++ L + Sbjct: 65 TVCKKIREKY-DTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRRMA 123 Query: 123 SKD 125 SK Sbjct: 124 SKQ 126 >gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378] Length = 225 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ E + E E + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETE-QVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDENQ 128 E + Sbjct: 120 SNQASEAK 127 >gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 231 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ R F V EA EA ++ +++D M + Sbjct: 5 KILVVDDEARMRKLVRDFLIRNDFDVVEAGDGEEALNVFYEDKNVALIILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREIRKESK---VPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLD 131 ++ L Sbjct: 122 TNQISADETLS 132 >gi|312889015|ref|ZP_07748575.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311298533|gb|EFQ75642.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1377 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +LL++D + +R+ R +F + ++EA + E E KE LP+ ++ D M G+ Sbjct: 1111 KTLLVIDDNQDIREYIRQVF-KLDYNIYEANNGEEGYELI-KEHLPDIVISDVMMPGMSG 1168 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E + V++ + + V L E + G GA+ ++ KPF++E L+ + L + Sbjct: 1169 IELCSLVKEDMAISHIPVILLTASSSPEIKLKGIEGGADDYISKPFDKEILKARVTGLLK 1228 Query: 120 MQKSKDE 126 + + + Sbjct: 1229 SRNTLQQ 1235 >gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 1111 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V + E E+E P L++D M G+ Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 767 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ K+ Sbjct: 768 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 827 Query: 124 K---DENQFLDA 132 + EN+ L++ Sbjct: 828 EMRHMENKVLES 839 >gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] Length = 1111 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V + E E+E P L++D M G+ Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 767 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ K+ Sbjct: 768 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 827 Query: 124 K---DENQFLDA 132 + EN+ L++ Sbjct: 828 EMRHMENKVLES 839 >gi|260909644|ref|ZP_05916341.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 472 str. F0295] gi|260636255|gb|EEX54248.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 472 str. F0295] Length = 935 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + V +D + + A + E E +L+P+ +V D M G+ Sbjct: 683 QRVLVIDDNADVAAFIGSQLSDK-YGIIYAHDGQDGLEKAE-QLVPDVIVTDLMMPGIDG 740 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + + + + ++ + G AGA+++L KPFNR+ LR + +L + Sbjct: 741 LEVCRRIRANEVTSHIPIIVVTAKITENDRVKGLEAGADAYLSKPFNRDELRMRVEKLLE 800 Query: 120 MQKSKD 125 ++ Sbjct: 801 QRRMLR 806 >gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 224 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW--NEQPDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFREKE--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 119 QMQKSKD 125 + K K+ Sbjct: 117 RRVKKKE 123 >gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 224 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEG--PDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 116 Query: 119 QMQKSKD 125 + K K+ Sbjct: 117 RRVKKKE 123 >gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM 15053] gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM 15053] Length = 235 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R+ G+ V++A E E E+E + ++D M + Sbjct: 3 MNHVLIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIERED-IHLAIVDVMMPRMD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR D V L + + I G GA+ ++ KPF L + + Sbjct: 62 GITMVVRLREKH-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRR 120 Query: 121 QKSKDE 126 + E Sbjct: 121 YRKFAE 126 >gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] Length = 240 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V AT+ +A + +E P+ +++D M G+ F Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 74 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 123 ---SKDENQFL 130 ++ N L Sbjct: 134 KGSAEPRNSRL 144 >gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098] Length = 226 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] Length = 229 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E K + L++D + + Sbjct: 3 KRVLVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELA-KNNEYDLLLLDVMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R +DV + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FAVCQQIR---DFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDE 126 K+E Sbjct: 119 RTGRKEE 125 >gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 236 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes FSL R2-561] gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes J0161] gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] Length = 236 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|304319971|ref|YP_003853614.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] gi|303298874|gb|ADM08473.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] Length = 238 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + + A EARE C P+ +++D M G Sbjct: 5 KILIVDDEASIREPLADYLAGHHYDILRAKDGLEAREVCRTA-QPDLVLLDIMMPGEDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +R+ V L D I G GA+ ++ KPFN L ++ + + Sbjct: 64 -SLLREWQATGGPPVILLTAMADDTDRIVGLELGADDYVTKPFNPRELVARIKAVLRRAG 122 Query: 123 SKDEN 127 + N Sbjct: 123 GEGAN 127 >gi|224538431|ref|ZP_03678970.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM 14838] gi|224519936|gb|EEF89041.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM 14838] Length = 1426 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R ++ + + EA + +P+ ++ D M + Sbjct: 1179 ILIVEDNEELRHFLVNMLQK-DYRILEAADGKSGLD-LTVSAMPDLIISDIMMPVMDGIE 1236 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V++ + + L + + I G GA+ ++ KPF+ L+ + L + + Sbjct: 1237 LLEAVKKNHDISHIPFILLSAKASLDDRIQGLEYGADDYITKPFSSSYLKARISSLLKQR 1296 Query: 122 KSKDE 126 + Sbjct: 1297 DALRR 1301 >gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] Length = 236 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + + R+ G+ V EA E +E P+ L++D + G Sbjct: 6 MPKVLIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEA-EIRLRETQPDLLLLDWMLPGLS 64 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + V L + + I G GA+ +++KPF+ L +R + Sbjct: 65 GIELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAIL 124 Query: 119 QM 120 + Sbjct: 125 RR 126 >gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 233 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 4 NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|319640287|ref|ZP_07995012.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317388062|gb|EFV68916.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1346 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L +V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1147 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1148 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1208 ESRKLLAE 1215 >gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 719 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ H + + R D G+++ A + EK+ + +++D + V Sbjct: 1 MKQILLVEDDHDIAALLRLNLEDEGYIITHEPDGGNALQCLEKQPW-DAVILDLMLPNVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + V + I G GA+ +L KPF+ + L ++ L + Sbjct: 60 GLEICRRIRQITRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRR 119 Query: 121 QKSKDENQ 128 Q++ + Q Sbjct: 120 QQAMGQAQ 127 >gi|294777704|ref|ZP_06743155.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448772|gb|EFG17321.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1346 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L +V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1147 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1148 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1208 ESRKLLAE 1215 >gi|265753055|ref|ZP_06088624.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236241|gb|EEZ21736.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1351 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L +V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1095 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1152 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1153 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1212 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1213 ESRKLLAE 1220 >gi|254881285|ref|ZP_05253995.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254834078|gb|EET14387.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1351 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L +V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1095 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1152 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1153 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1212 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1213 ESRKLLAE 1220 >gi|237711636|ref|ZP_04542117.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454331|gb|EEO60052.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1356 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L +V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1100 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1157 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1158 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1217 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1218 ESRKLLAE 1225 >gi|237725922|ref|ZP_04556403.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435730|gb|EEO45807.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1344 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L +V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1088 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1145 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1146 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1205 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1206 ESRKLLAE 1213 >gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 225 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] Length = 225 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + + GF V EA EA + + +++D M + + Sbjct: 5 KILVVDDEARMRKLVKDFLTNKGFQVIEAGDGEEAVDIFFADKDIALVLLDVMMPKMDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + V V L + + G G + ++ KPF+ + L + + + Sbjct: 65 -EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123 Query: 123 S 123 Sbjct: 124 M 124 >gi|212695343|ref|ZP_03303471.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855] gi|212662072|gb|EEB22646.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855] Length = 1346 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L +V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1147 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1148 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1208 ESRKLLAE 1215 >gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 237 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD ++ + G+ V A EA + LLPN +++D + L Sbjct: 14 KILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKA-RSLLPNLIILDLMIPEVDGL 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ + + + L + + G GA+ ++ KPF+ L ++ L + Sbjct: 73 EVCKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLR 131 >gi|218780205|ref|YP_002431523.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218761589|gb|ACL04055.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 305 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ D + R++ + V A + E ++ P+ +++D M G+ F Sbjct: 6 ILITDDEPMQRELLEEYLKLSHYRVTHAKDGNQCLEMMQQHE-PDLVLLDIQMPGMDGFA 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R++P D V +L + G GA+ ++ KPF+ L ++ + Sbjct: 65 TLTQIRKIPAIADTPVLFLSSLDRQHLKVKGLELGADDYITKPFHPPELLARVKASLRRT 124 Query: 122 KSKDENQFLDA 132 + + L A Sbjct: 125 MRYRKTEGLMA 135 >gi|150003414|ref|YP_001298158.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931838|gb|ABR38536.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1346 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L +V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1147 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1148 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1208 ESRKLLAE 1215 >gi|149191185|ref|ZP_01869443.1| DNA-binding response regulator GltR [Vibrio shilonii AK1] gi|148835023|gb|EDL52002.1| DNA-binding response regulator GltR [Vibrio shilonii AK1] Length = 242 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + GF V A E F + + P+ +++D + G Sbjct: 5 THILVVDDDEEIRLLLDEYLTKSGFQVSTAEDGVEMELFIKAKGYPDLILLDVMLPGDDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R + V + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 65 FTLCQRVR-RDSQVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRT 123 Query: 122 KS 123 Sbjct: 124 HL 125 >gi|156743164|ref|YP_001433293.1| response regulator receiver modulated diguanylate cyclase [Roseiflexus castenholzii DSM 13941] gi|156234492|gb|ABU59275.1| response regulator receiver modulated diguanylate cyclase [Roseiflexus castenholzii DSM 13941] Length = 443 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D VR++ + G+ VF + + +E +P+ +++D M + Sbjct: 3 KRILIADDEPAVRQLLELVLRSQGYEVFVTQNGDQ-LVRTAQEWIPDLVIVDLMMPQMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +R V + L E ++ G GA+ ++ KPFN L +R + Sbjct: 62 YEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYITKPFNIPELLARIRAHLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262] gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262] gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023] Length = 225 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ E E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEG-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDENQ 128 E + Sbjct: 120 SNQASEAK 127 >gi|302338300|ref|YP_003803506.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301635485|gb|ADK80912.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 242 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD V K+ G+ A + E E P+ +++D + G Sbjct: 10 KTILVVDDEEHVVKLLSMNLTSRGYDCLCAYTGEEGLEQARSHH-PDLIILDVMLPGIDG 68 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ P + V L + + I G GA+ ++ KPF+ L + + Sbjct: 69 IEVCRLLKSDPRTQLIPVLMLSAKSEGIDKIHGLEGGADDYITKPFSLRELFLRVEASLR 128 Query: 120 M 120 Sbjct: 129 Q 129 >gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA [Mycobacterium ulcerans Agy99] gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans Agy99] Length = 232 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA E P+ LV+D M + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMI-ASDRPDALVLDVMMPRLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L MR L + K Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 123 SKD 125 +D Sbjct: 123 LED 125 >gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] Length = 249 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D + ++ G+ V +A + + +L+P+ +++D + V Sbjct: 1 MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKG-QALAVQLVPDLIMLDLMLPRV 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R+ ++ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 DGFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRAL 119 Query: 118 PQM 120 + Sbjct: 120 LRR 122 >gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 232 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLL++ + ++ F GF V + +A E E +P+ +++D +E +E Sbjct: 6 LLLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVE-ERVPDIVLLDWMIESLPGIE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ P +V + L + E I G GA+ ++ KPF+ L + + + Sbjct: 65 VCRRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRRL 124 Query: 122 KSKDENQFLD 131 + + L Sbjct: 125 RPALAGEMLS 134 >gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 234 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + + + G+ V A EA + E E P+ +++D+ + Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEE-PDLVLLDQMLPEVE 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R + V + + + G GA+ ++ KPF+ L ++ Sbjct: 60 GTEVLRQIR---TKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANL 116 Query: 119 QMQ 121 + Q Sbjct: 117 RRQ 119 >gi|153216364|ref|ZP_01950429.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124114317|gb|EAY33137.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 773 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A + E ++E P +++D M G+ Sbjct: 368 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 426 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 427 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 484 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 485 ASKAELRRIE 494 >gi|119488053|ref|ZP_01621497.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] gi|119455342|gb|EAW36481.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] Length = 469 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + KV DFGF V A EK + P+ +++D M GV F Sbjct: 9 ILIVDDNPTNIKVLSDFLKDFGFKVLIAKDGESCLHKLEK-IKPDLILLDVMMPGVDGFE 67 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + D+ V ++ D + G GA ++ KP E + +++ Sbjct: 68 TCRRIKALDSTKDIPVIFMTALTDPVDKLKGFTLGAVDYITKPLQHEEAIARVNVHLKLR 127 Query: 122 ----KSKDENQFLDA 132 + + +N L+ Sbjct: 128 SLTKQLEQQNHLLEE 142 >gi|83648723|ref|YP_437158.1| response regulator [Hahella chejuensis KCTC 2396] gi|83636766|gb|ABC32733.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 242 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++VD +R++ + GF V A + + P+ +++D + G Sbjct: 6 KHIVVVDDDLEIRQLLSQYLSKNGFDVSPAEDGET-LFKLLEGVTPDLIILDIMLPGDDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V + L D I G GA+ ++ KPFN L M+ + + Sbjct: 65 FTICQRLRKS---STVPIIMLTANADDTDRIVGLEMGADDYIAKPFNPRELLARMKAILR 121 Query: 120 MQKSKD 125 + K Sbjct: 122 RVQPKQ 127 >gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] Length = 225 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + TD+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCKKMRTSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] Length = 233 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F + +A E PN +++D + G+ Sbjct: 5 QRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFET-YEPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V + L + + + G GA+ ++LKPF+ + + +R + + Sbjct: 64 YQVCREIRAKSG---VPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLR 120 Query: 120 MQK 122 Sbjct: 121 RYH 123 >gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] Length = 226 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +RK+ G+ V EA EA + ++ LV+D M Sbjct: 5 KILVVDDESRMRKLVHDFLAREGYEVLEAGDGEEALDIFYQQKDIALLVLDIMMPRINGF 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + V + L + D + G GA+ ++ KPF+ + L + L + Sbjct: 65 EVCREIRQ---TSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRR 121 >gi|77919939|ref|YP_357754.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546022|gb|ABA89584.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter carbinolicus DSM 2380] Length = 455 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 1/132 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R+ + D GF A + +A E P+ +++D + G+ Sbjct: 1 MKTILIVDDEQSIRESLDGILQDEGFRTLSAETGEDALTLLCGEN-PDLILLDIWLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V + E + + GA F+ KP + E + ++ ++ Sbjct: 60 GLETLRRIRDNDPEQIVIMMSGHGTIETAVKATKLGAYDFIEKPLSLEKVLISIENALKV 119 Query: 121 QKSKDENQFLDA 132 + +EN+ L A Sbjct: 120 GRLVEENRSLKA 131 >gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 255 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + ++ + G A EA C +E P +++D + F Sbjct: 33 VLVVDDEDALLELVAYNLRRNGMEPVLARDGAEAL-RCIEERRPQVIILDVMLPDTDGFT 91 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 G + L + G GA+ ++ KPF+ L ++ L + + Sbjct: 92 LCRHLRERGVQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEG 151 Query: 124 KDEN 127 + + Sbjct: 152 RRQQ 155 >gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] Length = 1382 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + +R+ L G V A + P+ +V D M + Sbjct: 632 RVLVADDNADMREYLTRLLRSAGHEVRAVADGRAALDAARAHT-PDLVVSDVMMPRLDGL 690 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R V L E I G AGA+ +L+KPF L +R ++ Sbjct: 691 QLVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRANVEL 750 Query: 121 QKSKDENQF 129 + ++ + Sbjct: 751 ARLRNHHAR 759 >gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 226 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + EA + EK + +++D + Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGA-DIVLLDLMLPEKS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V + + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRELR---TTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB [Alcanivorax sp. DG881] gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB [Alcanivorax sp. DG881] Length = 234 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 + +L+VD +R++ F V EA + E E P+ +++D + Sbjct: 4 NRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDE-RPDLVLLDWMLPSVTG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ +V + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLR 122 Query: 120 MQKSKDENQFLD 131 S + ++ Sbjct: 123 RASSVAAEKAIE 134 >gi|146305399|ref|YP_001185864.1| osmolarity response regulator [Pseudomonas mendocina ymp] gi|145573600|gb|ABP83132.1| Two-component response regulator OmpR [Pseudomonas mendocina ymp] Length = 245 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ F++ G+ V +V + + L N +V+D + G Sbjct: 13 KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQ-MDRLLARELFNLVVLDLMLPGEDGL 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 72 SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQ 130 >gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304] gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304] Length = 249 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++VD +R + + GF V AT+ EA + + P+ +V+D + + F Sbjct: 8 TIVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTN-PDLIVMDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V +L D + + G G + ++ KPF+ E + +R + + K Sbjct: 67 TVTRRIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTK 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQAED 131 >gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD ++R++ + G V EA EA E C+ + +++D M + Sbjct: 1 MYKLLVVDDEKMIRELIKKYATFEGHEVTEAEDGMEAIEKCKMN-QFDLIIMDVMMPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ TD V L + I G G + +++KPF+ + L + + Sbjct: 60 GFSACREIRK---FTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAII 116 Query: 119 QMQKSKDE 126 + K K+E Sbjct: 117 KRGKVKEE 124 >gi|290960601|ref|YP_003491783.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260650127|emb|CBG73243.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 464 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 9/122 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL++ + + FG V + + + + +++D + + Sbjct: 4 RVLLIEDDETIAEPLADGLRHFGLTVHHVATGADGL----RGPYGDVVLLDLGLPDMDGI 59 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +DV + L + + G GA+ +L KPF+ L +R + + Sbjct: 60 DVCRGIR---RTSDVPLIILSARGEEADRVLGLELGADDYLAKPFSIRELVARIRAVSRR 116 Query: 121 QK 122 + Sbjct: 117 HR 118 >gi|260174235|ref|ZP_05760647.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315922504|ref|ZP_07918744.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696379|gb|EFS33214.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1343 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQA-SSLQPQMIVSDIMMPVMSGL 1149 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1150 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1209 Query: 121 QKSKDE 126 +K + Sbjct: 1210 RKLLQQ 1215 >gi|241763956|ref|ZP_04761998.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax delafieldii 2AN] gi|241366779|gb|EER61220.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax delafieldii 2AN] Length = 235 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ GF + A+ + +LP+ +++D + Sbjct: 1 MKKLPRVLIVEDEPAIAELIAVNLRHNGFQPIWSEDGESAQRELDA-VLPDVILLDWMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L R + + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GQSGLMLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKD 125 + + + + Sbjct: 120 AVLRRRAPEQ 129 >gi|237718248|ref|ZP_04548729.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452432|gb|EEO58223.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1324 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +RKV +F + V+ A E E L P +V D M + Sbjct: 1073 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQA-SSLQPQMIVSDIMMPVMSGL 1130 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E + G + GA+ ++ KPFN + L + Q Sbjct: 1131 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1190 Query: 121 QKSKDE 126 +K + Sbjct: 1191 RKLLQQ 1196 >gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] Length = 262 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + F V A S EA E EK + P+ +V+D + + F Sbjct: 27 SIVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 85 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V +L D + + G G + ++ KPF+ E + +R + + + Sbjct: 86 TVTRRIRQEGINAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 145 Query: 123 SKDEN 127 + E Sbjct: 146 EQTEE 150 >gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 233 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + F G++V A + EA ++ + +++D M + F Sbjct: 4 KILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNY-DLILLDIMMPKLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +DV V L + + G GA+ +++KPF+ L ++ + + Sbjct: 63 -EALREIRKTSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRR 119 >gi|218886726|ref|YP_002436047.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757680|gb|ACL08579.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 275 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + + GF A E E + +V+D + G Sbjct: 7 ILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRY-DLVVLDVMLPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R++ +++ V L D I G GA+ ++ KPFN L +R + + ++ Sbjct: 66 LC-RKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARA 124 Query: 124 KDEN 127 EN Sbjct: 125 LPEN 128 >gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368] Length = 235 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + K+ + + GF T+ +A E E +++++D + + Sbjct: 3 KQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + + D + GA+ +L KPF+ L ++ + + Sbjct: 62 IEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121 Query: 122 KSKDE 126 K + E Sbjct: 122 KGEQE 126 >gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6] gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae TIGR4] gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39] gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54] gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397] gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457] gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458] gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae] gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6] gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39] gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54] gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV104] gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV200] gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458] gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457] gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397] gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375] gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545] gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301] gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570] gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317] gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901] Length = 235 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + K+ + + GF T+ +A E E +++++D + + Sbjct: 3 KQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + + D + GA+ +L KPF+ L ++ + + Sbjct: 62 MEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121 Query: 122 KSKDE 126 K + E Sbjct: 122 KGEQE 126 >gi|208702171|ref|YP_002267282.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|208658026|gb|ACI30396.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 226 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59 M +L+V+ I+R+ H F+ G+ V A + E+E + +++D + + Sbjct: 1 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L D + + G GA+ ++ KPF L + L Sbjct: 61 DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117 Query: 118 PQMQKSKDENQ 128 + + ++Q Sbjct: 118 FKDTNQQVQHQ 128 >gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] Length = 233 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F A + PN +++D + G+ Sbjct: 4 QKILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDT-YKPNLILLDLMLPGIDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R ++ + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 63 YQVCREIRTR---SNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLR 119 Query: 120 MQK 122 + Sbjct: 120 RYQ 122 >gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 225 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|284993166|ref|YP_003411721.1| histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284066412|gb|ADB77350.1| histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 919 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + +R L + + V AT+ EA + P+ +V D M G+ Sbjct: 598 TSVLVVDDNADMRAYLTRLLSPV-WTVRTATNGQEALDAVRAA-RPHVVVTDVMMPGLDG 655 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + +R P DV V L E + G AG + +L KPF L +R + + Sbjct: 656 FDLLRALRADPALRDVPVVMLTARAGQEAAVEGFDAGVDDYLAKPFESAELIGRLRAVVE 715 Query: 120 MQKSKD 125 + Sbjct: 716 RAAGRA 721 >gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 228 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 + +L+V+ +R++ + + V EA A P +++D M G Sbjct: 3 NKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKL--GEKPELILLDWMMPGRSG 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + I ++++ P + + L E I G AGA+ ++ KPF+ + L + + + Sbjct: 60 IHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110] gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110] Length = 235 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + K+ + F A A + +++ P+ +V+D + Sbjct: 1 MK-ILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQ-APDLIVLDLMLPKLD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ D ++ L + + + G GA+ +L+KPF+ L +R L Sbjct: 59 GLEVCTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|331243018|ref|XP_003334153.1| transcriptional activator protein copR [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313143|gb|EFP89734.1| transcriptional activator protein copR [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 2152 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + +R + + + + + V EA +A + + P+ LV D M G+ F Sbjct: 1378 TVLIADDNSDMRAFLKSVLSRY-YNVVEAVDGQQAYQLAKLN-RPDILVSDVMMPGMDGF 1435 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L E I G GA+ +L+KPF + L + Q+ Sbjct: 1436 ELLRRLKADSDTAGMSVILLSARAGSESRIEGLAEGADDYLVKPFEAKELVARVNTHLQI 1495 Query: 121 QKSKDENQ 128 K + + Sbjct: 1496 AKMRQRLE 1503 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 13/137 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------LLPNYLVIDE 54 +L+V+ + I KV + G+MV A EA + + +++D Sbjct: 2015 THVLVVEDNTINVKVIKRQLTLKGYMVSVAMDGREALNRLYADASETSELPPIDIVLMDI 2074 Query: 55 SMEGVLEFIA--HVRQMPLGTDV----FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108 M + A H+R ++ V + E+ +G +S +KP+ + Sbjct: 2075 QMPVMNGLEAITHLRAAEKTGEIKKRYPVIAVTGNARKEQTEQCLASGFDSICVKPYKID 2134 Query: 109 TLRFAMRELPQMQKSKD 125 ++ M L + D Sbjct: 2135 DVQSRMEALLANLELND 2151 >gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] Length = 234 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD ++ K R V A EA K+ + +++D + Sbjct: 1 MARILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLA-KQKEYDVVLLDVMLPKFD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +++ + L + + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GYEVCQAIRE---FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIM 116 Query: 119 QM--QKSKDENQ 128 + +K++ E++ Sbjct: 117 RRNTKKNRRESR 128 >gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] Length = 230 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V GF A+ A +++ P+ +V+D + + Sbjct: 4 RILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAIN-AQQQEDPDLIVLDIGLPEMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V + +L + I G GA+ +L KPF+ L ++ + + Sbjct: 63 EVCREIRKISE---VPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAILKR 119 >gi|258627290|ref|ZP_05722076.1| sensory box sensor histidine kinase/response regulator [Vibrio mimicus VM603] gi|258580473|gb|EEW05436.1| sensory box sensor histidine kinase/response regulator [Vibrio mimicus VM603] Length = 769 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V A E E ++E P L++D M G+ Sbjct: 364 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREK-PELLLLDIMMPGMSGYQ 422 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 423 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 480 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 481 ASKAELRRIE 490 >gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides fragilis 3_1_12] gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis 3_1_12] gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 224 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LLV+ + +FG V A E +E + + L+ID M G+ Sbjct: 1 MAKILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQE-VFDLLIIDIIMPGMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE R+ V V L E ++ G AGA+ +L+KPF+ + L ++ + Sbjct: 60 GLELCRLYRRQYGYL-VPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKAIL 118 Query: 119 QMQKSKDENQF 129 + + Q Sbjct: 119 RRGREDSARQL 129 >gi|159030410|emb|CAO91308.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 378 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 8/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D +++ R + VF A+ E + +L P ++ D M G+ Sbjct: 1 MVRILVIDDDGVIQTFLRRALQKE-YEVFVASDGEEGLKQA-GQLKPAMIICDWMMPGID 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + F L E + G AGA+ FL KP L+ +R Sbjct: 59 GLEVCRQIKLNPQLSTTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEINELKARVRAGM 118 Query: 119 QMQK----SKDENQFLD 131 ++ + + + Q L+ Sbjct: 119 RLHQLSHDLQAQKQLLE 135 >gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus 132] gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754] gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus MR1] gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796] gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus] gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus] gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus subsp. aureus TW20] gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus aureus 04-02981] gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754] gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796] gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED133] gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS03] gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS00] gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus T0131] gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21189] gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21172] gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21193] Length = 241 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA++ EA E + +++D + + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + L + + + G +GA+ +++KPF+ + ++ L + +S Sbjct: 64 VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 >gi|319940657|ref|ZP_08015000.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis 3_1_45B] gi|319806023|gb|EFW02781.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis 3_1_45B] Length = 241 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ G+ A S EA + + P+ +V+D M G+ Sbjct: 3 KRILLVDDERNLNQLIATNLKFEGYETESAYSGIEAIDKLGR-FSPDLVVLDVMMPGMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + H+R + + V L + + I G GA+ +L KPF + L + + + Sbjct: 62 FEVLEHLR---HASSIPVILLTAKNRVDDRIRGLTLGADDYLGKPFAIDELTARIEAVLR 118 Query: 120 MQK 122 + Sbjct: 119 RSR 121 >gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 242 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ R D G+ + A E+ + LV+D + GV Sbjct: 5 KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHW-DALVLDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRT 123 Query: 122 KSKDENQFLDA 132 + N L++ Sbjct: 124 DALARNARLES 134 >gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 232 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 8/138 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLVD VR+ + F V A++ EA + +E +P ++ D M Sbjct: 7 KVLLVDDEPGVRESVQAYLQYGDEFEVRTASNANEAWDLLNQE-IPELVISDIMMPQVDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +F+ +R+ + V +L I G AG +++L KPF+ E L ++ L + Sbjct: 66 YQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALIKSLIE 125 Query: 120 MQK----SKDENQFLDAI 133 ++ + EN L+ I Sbjct: 126 RRRQSLQATSENARLEEI 143 >gi|148979053|ref|ZP_01815298.1| sensory box sensor histidine kinase/response regulator [Vibrionales bacterium SWAT-3] gi|145962026|gb|EDK27314.1| sensory box sensor histidine kinase/response regulator [Vibrionales bacterium SWAT-3] Length = 1129 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V A E E EKE P L++D M G+ Sbjct: 727 IADDEPVSLRVLDSFLKLEGYRVRTACDGPETIELIEKEK-PELLLLDIMMPGMSGYQVC 785 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R+ + + L E + G AGAN +L KPFN++ L + S Sbjct: 786 ETLRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL--SAS 843 Query: 124 KDENQFLD 131 K E + L+ Sbjct: 844 KAEQRRLE 851 >gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 1128 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ V + E E+E P L++D M G+ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 784 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ K+ Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 844 Query: 124 K---DENQFLDA 132 + EN+ L++ Sbjct: 845 EMRHMENKVLES 856 >gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 248 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D +R++ + G+ V A++ EA E + L P+ +V+D M Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKF-RNLEPDLVVLDVMMPKLDGYG 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 VIQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRI 126 Query: 122 KSK 124 + + Sbjct: 127 EKE 129 >gi|300867936|ref|ZP_07112576.1| response regulator receiver modulated serine phosphatase [Oscillatoria sp. PCC 6506] gi|300334073|emb|CBN57754.1| response regulator receiver modulated serine phosphatase [Oscillatoria sp. PCC 6506] Length = 377 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D V+++ R G+ V A++ + ++L P ++ D M Sbjct: 1 MFQILVIDDDTAVQELLRRTLKKQGYEVTVASNGEDGITQA-QQLRPALIICDWIMPRLT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E V+ P + + L + G AGA+ F+ KP L+ +R Sbjct: 60 GIEVCRRVKANPDLSTTQFFLLTSLGSVADRVKGLDAGADDFISKPIELNELQARVRAGL 119 Query: 119 QMQKSKDENQ 128 ++ + + Q Sbjct: 120 RLHQLSRDLQ 129 >gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R] gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R] Length = 255 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD VR R + G+ V A +A E +KE P +++D M + Sbjct: 24 MK-ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKE-QPALVILDVMMPRMD 81 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G D + L + + G AGA+ +L KPF E L +R L + Sbjct: 82 GLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 141 >gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 254 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK--ELLPNYLVIDESMEG- 58 LL+V+ +R+ GF V A + +V+D + G Sbjct: 25 RRLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPGL 84 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L+ +R++ + + + G GA+ +L+KPF L R L Sbjct: 85 GGLDLCRELRRLNNT--TPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRAL 142 Query: 118 PQMQKSKD 125 + + Sbjct: 143 LRRSSQSE 150 >gi|291569601|dbj|BAI91873.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 379 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD + +V D + V A + A P+ +++D M + Sbjct: 10 SILIVDDTPDNLRVLSATLGDRDYDVQCAINGQLAL-MAVANQPPDLVLLDIKMPEMDGY 68 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V +L D + G ++ KPF E + + + Sbjct: 69 QVCEALKSQQKTADIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQLTI 128 Query: 121 QKSKDENQ 128 ++ + + Q Sbjct: 129 RRLQKQLQ 136 >gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F EA + E + PN +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFE-QYNPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR +V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREVRAKA---NVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RYQ 123 >gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39] gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39] Length = 229 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ VF A + E +K + P+ +++D M + Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKK-VHPDLIILDIMMPKMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +P + F+ +L + IAG GA+ ++ KP L + + + Sbjct: 65 IEACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILR 124 Query: 120 MQKSKDE 126 S DE Sbjct: 125 RNSSSDE 131 >gi|332885780|gb|EGK06026.1| hypothetical protein HMPREF9456_02290 [Dysgonomonas mossii DSM 22836] Length = 1335 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R + F V A + + + LP+ ++ D M + Sbjct: 1078 KILIIDDEEEIRDFLSQELGEL-FKVITAVDGVDGLQVAI-DRLPDLIISDVMMPNMDGL 1135 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + + + L + +++ I G GA+++L KPFN E L + L Sbjct: 1136 NLLKRLKNNNNVSHIPIILLTSKAEYQDRIQGLDRGADAYLSKPFNIEELIVTINNLILN 1195 Query: 121 QKSKD 125 ++ Sbjct: 1196 RRLLK 1200 >gi|313497378|gb|ADR58744.1| GltR_2 [Pseudomonas putida BIRD-1] Length = 241 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +R++ + + GF V + + +++D + Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGK-GFRHALETTPCDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RTE 127 >gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 245 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A EA +EL P+ +V+D + + Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAI-RITRELRPDAVVLDVMLPDMDGL 79 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R D+ V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 80 TVLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 139 Query: 123 SKD 125 + Sbjct: 140 AAA 142 >gi|325981774|ref|YP_004294176.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] gi|325531293|gb|ADZ26014.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] Length = 242 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ ++++ G MV A A + +LP+ +++D + L Sbjct: 4 TILIVEDELAIQELIALNLKKAGHMVLCAGDATHA-KLLINNVLPDLVLLDWMLPDITGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF +R+ + + L + IAG AGA+ ++ KPF+ L ++ + + Sbjct: 63 EFARSLRREERTKTIPIIMLTARIQENDKIAGLEAGADDYITKPFSPRELLARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + + ++ +D Sbjct: 123 RLPEMSDEIID 133 >gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 235 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + ++ GF V A + +A ++ P+ +V+D + + F Sbjct: 8 RLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRH-RPDLIVLDVMLPDMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R GTD V +L E I G AG + ++ KPF+ E + +R + + Sbjct: 67 DVVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTG 126 Query: 123 S 123 + Sbjct: 127 A 127 >gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] Length = 234 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ + G+ V EA KE +P+ +V+D + G + Sbjct: 4 RILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRL-KERVPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKD 125 + Sbjct: 123 ASPER 127 >gi|123967682|ref|YP_001008540.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197792|gb|ABM69433.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 260 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M S+LL++ +R + GF V +A + + + P+ +++D + Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L +R+ +++ + + + + G +GA+ ++ KPF+ E L ++ L Sbjct: 60 DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119 Query: 118 PQMQKSKDEN 127 + N Sbjct: 120 LRRTNRAQLN 129 >gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 4 MPTILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 119 QMQKSKDE 126 + + DE Sbjct: 121 RRIEVHDE 128 >gi|26987748|ref|NP_743173.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24982439|gb|AAN66637.1|AE016291_6 DNA-binding response regulator GltR [Pseudomonas putida KT2440] Length = 241 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +R++ + + GF V + + +++D + Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGK-GFRHALETTPCDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RTE 127 >gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 10/140 (7%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+ D + ++ G+ V +AT +A E + + + +V+D M Sbjct: 1 MKPITILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQ-AIDLVVLDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ ++ + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQIRTKQNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQL 118 Query: 119 QM------QKSKDENQFLDA 132 + K ++E L+A Sbjct: 119 RRFLTLNQPKVEEETSVLEA 138 >gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 238 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ R+ + G+ V A +A E E+ + +++D + G Sbjct: 1 MTRILLVEDEESYREPLTYQLEREGYEVVAAADGLQAIELFEEHGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R L +DV V L + D + G GA+ ++ KP++ L MR + Sbjct: 60 GTEVCRRLR---LTSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVL 116 Query: 119 QMQK 122 + ++ Sbjct: 117 RRRE 120 >gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144] gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144] gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis FRI909] Length = 241 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R++ + F + EA EA E + +++D + + Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNY-ACILLDLMLPEM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + D + L + + + G +GA+ +++KPF+ + ++ L + Sbjct: 60 DGIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118 Query: 120 MQKSKDENQ 128 ++ + Q Sbjct: 119 RTQTANTEQ 127 >gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium Y4I] gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium Y4I] Length = 229 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V + GF V A EA +E +P+ +++D M + Sbjct: 7 TVLVVEDEMAQREVLAYNLEADGFRVLRAGHGEEAL-LVVEEDMPDIIILDWMMPNLSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ ++ V L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 VRPSTVGVRLE 136 >gi|254414953|ref|ZP_05028716.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196178100|gb|EDX73101.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1317 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L++D + K+ D GF V A S + + EK L P+ +++D M + F Sbjct: 10 ILVIDDTPENLKLVSDFLRDAGFEVRIAKSGEQGLKLLEK-LNPDLILLDVMMPDMDGFE 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDF---EKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 H++ D+ V ++ VD E + G GA ++ KP + + ++ Sbjct: 69 ACRHLKAWEKTKDIPVIFMTAAVDTSNCEAKVKGLSLGAVDYISKPIQLDEVLARVKIHL 128 Query: 119 QMQ 121 ++ Sbjct: 129 HLK 131 >gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911] gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911] Length = 238 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ + +++ EA EA E E + +++D M G Sbjct: 5 TKILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAF-ETDYDVILLDLMMPGKDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ V L + + + G AG + +++KPF+ + ++ L + Sbjct: 64 IEVCRELRER---KATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + V + GF V A A + E + +V+D + + Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNEN-IHLIVLDLMLPKMTGE 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + L + + ++ I G GA+ +L KPF+ L +R L + Sbjct: 65 EVCNRIRAVSS---VPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRR 121 >gi|313620820|gb|EFR92044.1| transcriptional regulatory protein WalR [Listeria innocua FSL S4-378] Length = 199 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + N GF V+ A EA E E E+ P+ +++D + G Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119 Query: 120 MQ 121 Sbjct: 120 RH 121 >gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L++D + + + G+ V +A F E P+ +++D + Sbjct: 4 KKILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFES-FRPDLIILDIMLPDING 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E VR + + L + D I G GA+ +L KPF+ L ++ L + Sbjct: 63 NEVCKMVRSNSS---IPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLR 119 Query: 120 MQKSKDEN 127 KD N Sbjct: 120 RTGLKDVN 127 >gi|254883604|ref|ZP_05256314.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254836397|gb|EET16706.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1446 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 64/144 (44%), Gaps = 15/144 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ + +R+ + + + V A E E+E +P++++ D M + Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEE-IPDFIITDIMMPRMDGI 1247 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I H+++ D+ + L + E I + G + ++ KPF+ + L+ + L + Sbjct: 1248 ELIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307 Query: 121 QK-----------SKDENQFLDAI 133 +K ++ + + L+A+ Sbjct: 1308 RKVLQSAFLSKYGAQPKKEPLEAV 1331 >gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] Length = 1400 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + +R+ L G V T A + E P+ ++ D M G+ Sbjct: 648 RVLIADDNADMREYLARLLRGAGHRVSAVTDGYAALDRARAET-PDLIISDVMMPGLDGL 706 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R + V L E I G AGA+ +L+KPF+ L ++ ++ Sbjct: 707 RLVADLRADGRTAGIPVLLLSARAGQEASIEGLEAGADDYLVKPFSAAELLARVQTNVKL 766 Query: 121 QKSKDENQF 129 + ++++ Sbjct: 767 VRLRNQHAR 775 >gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 232 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + +G+ V S E + P +++D M G Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSS-PAIVILDIMMPGKDGL- 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R + ++V V L + + I G GA+ ++ KPFN L ++ + + K Sbjct: 65 EVLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKG 124 Query: 124 KDEN 127 + N Sbjct: 125 PENN 128 >gi|157369751|ref|YP_001477740.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157321515|gb|ABV40612.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 237 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ + D G+ + A E+ + L++D + G+ Sbjct: 5 KKILIVEDDGNIAELLQLHLRDEGYDISHAADGNLGMAMLEQGGW-DALILDLMLPGIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + G GA+ +L KPF+ L ++ L + Q Sbjct: 64 LEICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123 Query: 122 KSKDENQFLDA 132 ++ N +DA Sbjct: 124 EAMSRNLRMDA 134 >gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 245 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLV+ + + K+ G+ VF A +A + E+ P+ +++D + Sbjct: 10 MEKILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERH-QPDVVLLDWMLPRLN 68 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + +RQ V L + + G GA+ +L KPF+ L +R L Sbjct: 69 GLEVLRRLRQSSA---TPVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALL 125 Query: 119 QMQKS 123 + + Sbjct: 126 RRAEL 130 >gi|270295181|ref|ZP_06201382.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274428|gb|EFA20289.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1303 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD ++ K + V +AT+ A EKE + +V D M + Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKED-IDLVVSDIMMPEMDGL 1111 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + + + L + E + G GA+ ++ KPFN E L+ + ++ +M Sbjct: 1112 ELCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKIIEM 1171 Query: 121 QKSKDE 126 + E Sbjct: 1172 NVKRQE 1177 >gi|225376447|ref|ZP_03753668.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM 16841] gi|225211823|gb|EEG94177.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM 16841] Length = 228 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + G+ VFEA + EA E +KE + +++D M + Sbjct: 1 MYRILVCDDEKDIVSALKIYLMADGYQVFEAYNGREALEILKKED-IHLVLMDIMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + ++V V L + + + G GA+ ++ KPFN L+ ++ + Sbjct: 60 GITAMLKIREV-SNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNTVELQARVKSQLRR 118 >gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 263 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M S+LL++ +R + GF V +A + + + P+ +++D + Sbjct: 4 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 62 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L +R+ +++ + + + + G +GA+ ++ KPF+ E L ++ L Sbjct: 63 DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 122 Query: 118 PQMQKSKDEN 127 + N Sbjct: 123 LRRTNRAQLN 132 >gi|160891726|ref|ZP_02072729.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492] gi|317478215|ref|ZP_07937381.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156859133|gb|EDO52564.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492] gi|316905608|gb|EFV27396.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1303 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD ++ K + V +AT+ A EKE + +V D M + Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKED-IDLVVSDIMMPEMDGL 1111 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + + + L + E + G GA+ ++ KPFN E L+ + ++ +M Sbjct: 1112 ELCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKIIEM 1171 Query: 121 QKSKDE 126 + E Sbjct: 1172 NVKRQE 1177 >gi|83721603|ref|YP_441449.1| DNA-binding response regulator OmpR [Burkholderia thailandensis E264] gi|83655428|gb|ABC39491.1| DNA-binding response regulator OmpR [Burkholderia thailandensis E264] Length = 259 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 19 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 77 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L + + + Sbjct: 78 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 137 Query: 120 MQK 122 ++ Sbjct: 138 RRR 140 >gi|152974374|ref|YP_001373891.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023126|gb|ABS20896.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 224 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA + EK+ ++++D M + Sbjct: 1 MIDILLVDDEPKMLELLTLYLTPKGYNCVCATSGQEAISYIEKQNFK-FVLLDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + + + + ++ G + GA+ ++ KPF+ E L + + + Sbjct: 60 GWETC-KNIRSFSRIPILMVTARDQKIDVVHGLKIGADDYITKPFHEEELLARIEAVLRR 118 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 119 TNEHEQIQ 126 >gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family protein [Marinomonas sp. MED121] gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family protein [Marinomonas sp. MED121] Length = 232 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL D + + + F+ G+ V A + EA + K+ P+ +++D M + Sbjct: 1 MVKLLLADDDARLSDLIKEYFSGEGYEVLHAWNGVEALDLLVKQS-PDLVILDVMMPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + + V V L + D I G GA+ +L KPFN L ++ + + Sbjct: 60 GF-ETLKLIRAKSKVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR 118 Query: 121 QKSKDENQF 129 + E Sbjct: 119 AANDKEEDL 127 >gi|167752240|ref|ZP_02424367.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216] gi|167660481|gb|EDS04611.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216] Length = 389 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + + + G+ + AT EA E E E P+ +++D M + Sbjct: 12 KILVVDDIATNVLLLKTILGKAGYRIVTATGGREALEKVESES-PDLILLDIMMPDMNGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I ++ + V +L D E ++ G + GA+ ++ KPFN E L + + Sbjct: 71 EVIERLKADERFCRIPVIFLSALHDSENIVKGFKMGASDYVSKPFNHEELITRVAHHMFI 130 Query: 121 QKSK----DENQFLDA 132 +++ +N+ L Sbjct: 131 AEAQRVIVRQNEELQE 146 >gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica PHL213] gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica PHL213] Length = 228 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 + +L+V+ +R++ + + V EA A P +++D M G Sbjct: 3 NKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKL--GEKPELILLDWMMPGRSG 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + I ++++ P + + L E I G AGA+ ++ KPF+ + L + + + Sbjct: 60 IHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 233 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + GF V + +A +E P+ +V+D + + F Sbjct: 9 RILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEE-PDIIVLDVMLPDMNGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + +L + D E I G G + ++ KPF+ + + ++ + + Sbjct: 68 GVTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 127 Query: 123 SKDENQFLDA 132 DE+ + A Sbjct: 128 QADEDAVIRA 137 >gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 225 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A + EA E E +P+ ++ D M + Sbjct: 20 KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILE-HDVPDMIICDVMMPEMDG 78 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ VRQ + + V +L + + G GA+ +++KPF E L + + Sbjct: 79 YTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 138 Query: 120 MQKSKDENQ 128 E+Q Sbjct: 139 QTIRWKEHQ 147 >gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pasteur 52237] gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pasteur 52237] Length = 235 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ + ++ G A + +A + ++LP+ +++D + G + Sbjct: 6 NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQA-QSLISDVLPDLVLLDWMLPGKSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 65 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124 Query: 121 QKSK 124 + + Sbjct: 125 RAPQ 128 >gi|330501332|ref|YP_004378201.1| osmolarity response regulator [Pseudomonas mendocina NK-01] gi|328915618|gb|AEB56449.1| osmolarity response regulator [Pseudomonas mendocina NK-01] Length = 245 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ F++ G+ V +V + + L N +V+D + G Sbjct: 13 KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQ-MDRLLARELFNLVVLDLMLPGEDGL 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 72 SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQ 130 >gi|315185413|gb|EFU19185.1| response regulator receiver sensor signal transduction histidine kinase [Spirochaeta thermophila DSM 6578] Length = 431 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + ++V A S EA EK + +++D M + F Sbjct: 10 RILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTP-FDLILLDIMMPEMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR P D+ + +L + D E ++ G G +++KP++ L ++ + Sbjct: 68 EVCRRVRNNPKTRDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQLSL 127 Query: 121 QKSKDENQFLD 131 ++ + + + L Sbjct: 128 REQQKKIEELS 138 >gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis MSMB43] Length = 233 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ + ++ G A + +A + ++LP+ +++D + G + Sbjct: 4 NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQA-QSLISDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium thermophilum] Length = 242 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +++++ + + R+ G F V T+ + PN +++D ++ Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHP-PNLILLDINLPL 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F +R+ V + L D I G GA+ ++ KPF+ L + Sbjct: 60 MNGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINA 119 Query: 117 LPQMQK 122 + + + Sbjct: 120 VLRRTE 125 >gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435] gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus haemolyticus JCSC1435] Length = 241 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R++ + F + EA++ EA + +++D + + Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDY-ACILLDLMLPEM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + D + L + + + G +GA+ +++KPF+ + ++ L + Sbjct: 60 DGIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118 Query: 120 MQKSKDENQ 128 +S Q Sbjct: 119 RTQSSKPEQ 127 >gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 231 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D KV H GF V +A+ EA + + P+ +++D M V Sbjct: 5 RRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQ-RPDLVILDVMMPKVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R + V + L D + G R GA+ ++ KPF+ L + + + Sbjct: 64 FAVCGRIRAA-SAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM 122 Query: 122 KSKDENQFL 130 + E++ L Sbjct: 123 PTLPESRTL 131 >gi|328951840|ref|YP_004369174.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109] gi|328452164|gb|AEB07993.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109] Length = 357 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + R + G A + +A E + +++D M + Sbjct: 17 ILVVDDNRMNRLMLARGLEKQGHQAAFAENGRQALAML-AEQDFDLILLDIEMPEMNGYQ 75 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + H+ D+ V + + + ++ GA +L KPFN L+ + + + Sbjct: 76 VLDHLAANVRWRDLPVIMISAVDEIDSVVRCIELGAEDYLTKPFNPVLLKARVDASLEKK 135 Query: 122 KSKDENQFL 130 + +DE + L Sbjct: 136 RLRDEQRAL 144 >gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3] gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3] Length = 233 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 4 NILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4] gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4] Length = 231 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R + G+ + EA + EA + + +++D M + Sbjct: 3 TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHS-FQLIILDVMMPEMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + L + + G GA+ +L KPF E L + L + Sbjct: 62 WEVCEEIRK--ENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|158333299|ref|YP_001514471.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158303540|gb|ABW25157.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017] Length = 343 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + D GF V+ ATS A + LP+ +++D M G+ Sbjct: 9 NILIVDDVPTNLTILAQTLRDQGFTVWVATSGNAALKQL-AHGLPDLILLDIQMPGMNGL 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ D+ V ++ + + G GA ++ KPF + ++ + Sbjct: 68 ETCAKLKADLRTQDIPVIFMSALSEQANKVEGLSLGAVDYITKPFQEAEVLARVKVHLSI 127 Query: 121 QKSKDENQF 129 ++ Q Sbjct: 128 RELTQNLQR 136 >gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 231 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA + P+ +V+D M + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLI-ASDRPDAVVLDVMMPRLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D+ + L + +AG AGA+ +L KPF E L MR L + Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT] gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 232 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R+ + + G VFEA +A +E + +++D M + Sbjct: 4 NNVLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDAL-MLLQEQEIHLILMDIMMPKMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + D+ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 63 IKATFKIREK-KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 120 >gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator [Burkholderia pseudomallei K96243] gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC 23344] gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710b] gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis E264] gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei SAVP1] gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10229] gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 668] gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10247] gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106a] gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 305] gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei PRL-20] gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis TXDOH] gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis Bt4] gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 576] gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pakistan 9] gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei MSHR346] gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei GB8 horse 4] gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106b] gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei ATCC 10399] gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1655] gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei S13] gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei FMH] gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei JHU] gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710a] gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 406e] gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei 2002721280] gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis E264] gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator [Burkholderia pseudomallei K96243] gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC 23344] gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710b] gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis E264] gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei SAVP1] gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10229] gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 668] gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106a] gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10247] gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 305] gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei FMH] gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei JHU] gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei 2002721280] gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 406e] gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei ATCC 10399] gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei S13] gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1655] gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 576] gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pakistan 9] gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei MSHR346] gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei GB8 horse 4] gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106b] gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei PRL-20] gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710a] Length = 233 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ + ++ G A + +A + ++LP+ +++D + G + Sbjct: 4 NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQA-QSLISDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|307293714|ref|ZP_07573558.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] gi|306879865|gb|EFN11082.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] Length = 722 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + V D G V A EA + + + P+ +++D M G+ Sbjct: 13 RTVLIVDDNPANLGVIVDHLEDAGLHVSVAQGGEEALKRAQF-IQPDLILLDVMMPGIDG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ ++ V ++ D +A AG ++ KPF E L + + Sbjct: 72 FETCRRLKANEATREIPVIFMTALDDIHDKVAAFAAGGVDYVSKPFQVEELLARVITHLE 131 Query: 120 MQKSKDEN 127 ++ ++ Sbjct: 132 LRSARQRL 139 >gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019] gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019] Length = 250 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA + E+ + P+ +V+D + + F Sbjct: 12 SIVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIER-VHPDLIVMDVMLPDIDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V +L D + I G G + ++ KPF+ E + +R + + + Sbjct: 71 TVTRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 130 Query: 123 SKDEN 127 DE+ Sbjct: 131 DPDED 135 >gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] Length = 229 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 11/138 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + GF V A + + +++D + GV Sbjct: 1 MSKILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGD-FDLVILDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICRKVRAE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QMQK-----SKDENQFLD 131 + + +EN+ ++ Sbjct: 117 ARYERLIGSAVEENKVIE 134 >gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] Length = 240 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V+ AT+ +A + +E P+ +++D M G+ F Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 74 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 >gi|150002960|ref|YP_001297704.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931384|gb|ABR38082.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1440 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 64/144 (44%), Gaps = 15/144 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ + +R+ + + + V A E E+E +P++++ D M + Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEE-IPDFIITDIMMPRMDGI 1241 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I H+++ D+ + L + E I + G + ++ KPF+ + L+ + L + Sbjct: 1242 ELIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1301 Query: 121 QK-----------SKDENQFLDAI 133 +K ++ + + L+A+ Sbjct: 1302 RKVLQSAFLSKYGAQPKKEPLEAV 1325 >gi|186681390|ref|YP_001864586.1| response regulator receiver modulated metal dependent phosphohydrolase [Nostoc punctiforme PCC 73102] gi|186463842|gb|ACC79643.1| response regulator receiver modulated metal dependent phosphohydrolase [Nostoc punctiforme PCC 73102] Length = 409 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R L G+ V EA + P+ +++D M G+ F Sbjct: 96 KVLVVDDHAASRMTAVALLGMEGYEVIEADRGSTVVGLV-TQKQPDLILLDVMMPGMDGF 154 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V ++ D I G GA+ FL KPF+R L ++ L + Sbjct: 155 EVCQLLKQDEQTRLIPVIFITALNDRRSRIRGIEVGADDFLTKPFDRVELAARVKSLVRQ 214 Query: 121 QKSKDENQFLDAI 133 ++ ++ + + Sbjct: 215 KRLNEDLDHAEQV 227 >gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 225 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + R + G+ V A E + +V+D + G+ Sbjct: 1 MTRILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTY-DLIVLDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L +AG AGA+ +L+KPF E L +R + Sbjct: 60 GLEVA-RRLRADSNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRR 118 Query: 121 QKSKDENQFL 130 ++S L Sbjct: 119 RQSGQAQDVL 128 >gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium 3_1_46FAA] Length = 226 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V+ A + EA + P+ +++D +M+G+ Sbjct: 6 KILIVDDEQSILDMLKLQLEFEGYSVYTAGNAAEALDKL--SYSPDIVLLDINMDGMNGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +L V + I G AG + ++ KPF+ L + + Sbjct: 64 DLCVSIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRR 120 Query: 121 QK 122 ++ Sbjct: 121 EQ 122 >gi|313145398|ref|ZP_07807591.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313134165|gb|EFR51525.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 1361 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+++ + VR+ R LF + V EA E + KE +P+ ++ D M Sbjct: 1113 KTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKE-IPDLIISDVMMPVKDG 1170 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ + + L + ++ G+R+GA+ +++KPFN E L+ + L Sbjct: 1171 FACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLIL 1230 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1231 QRERLKR 1237 >gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 2028 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + +R L V AT+ +A E + P+ ++ D M G+ F Sbjct: 1657 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQP-PDLVLADVMMPGLDGF 1715 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + L E + G ++GA+ +L+KPF+ L +R M Sbjct: 1716 GLVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDM 1775 Query: 121 QKSKDE 126 + + E Sbjct: 1776 ARVRRE 1781 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LL D + +R L + + V + A P+ ++ D M G L Sbjct: 642 RILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANP-PSLIISDVMMPGVNGL 699 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R + + L E I G +GA+ +L+KPF+ + L + L + Sbjct: 700 ELVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTV 759 Query: 121 QKSKD 125 + + Sbjct: 760 SQLRQ 764 >gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 223 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + + GF V EA++ EA + ++ +++D M + Sbjct: 5 KILVVDDEARMRKLVKDFLSVKGFSVVEASNGEEAVDLFFEQKDIVLIILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 ETCKTIRK---YSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKS 123 + Sbjct: 122 SNA 124 >gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + + GF EA EA + + + +++D M Sbjct: 4 RTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPV-DAVLLDVMMPKQDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R +DV + +L + + G + G + +++KPF+ L + + + Sbjct: 63 FAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRV 121 Query: 122 KSKDEN 127 + EN Sbjct: 122 QRVREN 127 >gi|160945777|ref|ZP_02093003.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii M21/2] gi|158443508|gb|EDP20513.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii M21/2] Length = 231 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L+VD + ++ + +F GF + A+S A + CE++ P+ +++D M G+ Sbjct: 4 KRILVVDDETDLLEMVKSIFTRAGFTQILTASSGEAALKMCEEQE-PDMMILDVMMPGMD 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A ++++ + + V L + E G GA+ +LLKPF + L F ++ + + Sbjct: 63 GF-AALKELRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKR 121 Query: 121 QKSKDENQ 128 + E + Sbjct: 122 VYPEKERK 129 >gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 233 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 58/130 (44%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ R + G+ V + E EK P+ +++D + G Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNT-PDLIILDLMLPGIGG 68 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +++ + + + + + + G GA+ ++ KPF+ L +R + + Sbjct: 69 MDLCKKIKEKYS---MPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLR 125 Query: 120 MQKSKDENQF 129 K ++E++F Sbjct: 126 RIKDEEEDEF 135 >gi|167037177|ref|YP_001664755.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166856011|gb|ABY94419.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 318 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + RK+ + + + G+ V EA EA + + LP+ +++D M G+ Sbjct: 12 RNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIY-RNKLPDMVILDIVMPGMNG 70 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + +R+ + + L + +FE+ I G GA+ +L+KPFN + L F + L Q Sbjct: 71 FDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNNLFQ 130 Query: 120 MQK 122 + Sbjct: 131 RIE 133 >gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM 13528] gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + +V + G+ A E E P+ +++D + + Sbjct: 7 KILIVDDDENICEVIKMYVESAGYETKVVNDGKTA-ETMFLEYKPDLVLLDIMLPNIDGI 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V L + + + G GA+ +++KPF + + ++ + + Sbjct: 66 DVLKWIRKEYE---TPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRR 122 Query: 121 QKSKDENQ 128 +EN+ Sbjct: 123 YSVDNENK 130 >gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 226 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ VR+ G V A + + +E P+ +V+D + G+ Sbjct: 1 MAVVLVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKL-RERAPDLVVLDLMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + V + L D ++AG AGA+ +++KP L +R + Sbjct: 60 GFETCRRIRALG---QVPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVL 116 Query: 119 QMQKSK 124 + ++ Sbjct: 117 RRTAAE 122 >gi|87121149|ref|ZP_01077040.1| Response regulator [Marinomonas sp. MED121] gi|86163641|gb|EAQ64915.1| Response regulator [Marinomonas sp. MED121] Length = 264 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++ +VD +R + + F V A S E++ + +++D + G Sbjct: 5 KTVFVVDDDAEIRNLLKTYLEKHQFNVRTADSGESFLADFEQDSAADLIILDIMLPGEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R L V V L D I G GA+ +L KPFN L M+ + + Sbjct: 65 FSVCRSLRMKSL---VPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMKAIFR 121 Query: 120 MQKSKDENQ 128 + +Q Sbjct: 122 RIEQIALSQ 130 >gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 228 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + ++ R GF V EA + + P+ +++D + + Sbjct: 1 MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSF-TQRKPSLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116 Query: 119 QM--QKSKDENQFL 130 + +K++ E+Q L Sbjct: 117 RRLERKAEPEDQSL 130 >gi|284037861|ref|YP_003387791.1| histidine kinase [Spirosoma linguale DSM 74] gi|283817154|gb|ADB38992.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1311 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 4/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + +R + + + V A + E E E LP+ ++ D M + Sbjct: 1064 MPLILVVEDNIELRDFIANELSQS-YRVLTARNGQEGWEQVRSE-LPDVVISDIMMPDLD 1121 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ L + V L E + G GA+ +L KPF+ L+ + L Sbjct: 1122 GYALTRQLKTNTLTNHIAVILLTARASQESRMNGLMQGADDYLTKPFSISELKQRICNLL 1181 Query: 119 QMQKSKD 125 Q++ Sbjct: 1182 TRQQALR 1188 >gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 237 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 4/123 (3%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ +R+ F V EA S EA K P+ +V+D + Sbjct: 1 MKGQERILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTR-SKTFRPHLMVLDIMLP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 G+ R + V L + G GA+ +++KPFN L +R + Sbjct: 60 GMDGLEVCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAV 119 Query: 118 PQM 120 + Sbjct: 120 LRR 122 >gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E P+ L++D + Sbjct: 2 MMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW--NEQPDVLILDVMLPDTD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 60 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 117 Query: 119 QMQKSKD 125 + + ++ Sbjct: 118 RRVRKEE 124 >gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 225 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|261854834|ref|YP_003262117.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261835303|gb|ACX95070.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 262 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + + GF V S E + + LV+D + G Sbjct: 16 RILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDGL 75 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R P V L + I G GA+ ++ KPFN L +R + + Q+ Sbjct: 76 SIARRLDPKTR-PPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 123 SKDENQ 128 + + + Sbjct: 135 MEPDAR 140 >gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 226 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ R + GF V EA EA + + +++D M + + Sbjct: 5 KILVVDDEARMRKLVRDFLTNKGFTVIEAGDGEEAVDTFFAQKDIALVLLDVMMPKMDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + V V L + + G G + ++ KPF+ + L + + + Sbjct: 65 -EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123 >gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 229 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V + GF V +A + EA +E +P+ +V+D M + Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEAL-LLVEEDMPDIIVLDWMMPNLTGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + L + + G GA+ +++KP++ L +R + Sbjct: 66 EICRRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 VRPATVGMRLE 136 >gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 235 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD +R+ R G A++ EA + + + +++D M Sbjct: 1 MKDSRVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNE-IHLILMDVMMPK 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + +R+ ++V + L + + I G GA+ ++ KPFN L ++ Sbjct: 60 MDGIVTTSLIRE---FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKS 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|256829806|ref|YP_003158534.1| response regulator receiver modulated diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256578982|gb|ACU90118.1| response regulator receiver modulated diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 310 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD + + + D + AT+ A E E P+ +++D M G+ Sbjct: 8 NTILIVDDEPVNIRALEIVLGDE-HDLTYATTGEMALEMARAEPQPDLILMDIVMPGLDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F A +++ ++ V +L + + + G GA ++ KPF+ +R +R + Sbjct: 67 FEVCAELKKDDKTRNIPVVFLTAKWETSEEAKGLELGAVDYIRKPFSPPIIRARIRNHLE 126 Query: 120 MQKSKDENQFLDAI 133 +++++D + L + Sbjct: 127 LKRNRDLLENLSTL 140 >gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA E E P +++D + + Sbjct: 3 KKILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFE-QPALIILDLMLPKLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 VEVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121 Query: 122 KSKD 125 Sbjct: 122 DLAQ 125 >gi|284052602|ref|ZP_06382812.1| response regulator receiver modulated serine phosphatase [Arthrospira platensis str. Paraca] Length = 374 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 7/133 (5%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L++D I+R++ + G+ V A++ E E KEL P ++ D M +E Sbjct: 1 LVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKA-KELRPALMICDWIMPRLTGIEV 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+ MP + + L + + G AGA+ FL KP L +R ++ + Sbjct: 60 CRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLRLHQ 119 Query: 123 ----SKDENQFLD 131 + + Q L+ Sbjct: 120 LSQDLQTQKQLLE 132 >gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 232 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M S+L+ D + + G+ V +A EA + + + +V+D M Sbjct: 1 MKHISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 239 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF+V + +A + + +V+D + G Sbjct: 6 KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQA-DRLLTRENFSLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + V L + D I G GA+ +L KPFN L +R + + Sbjct: 65 SICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRH 123 >gi|94263702|ref|ZP_01287510.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455901|gb|EAT06060.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 407 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD I + + + + A + +A + + P+ +++D M G+ Sbjct: 9 TILVVDDVAINIMIIKGALKSE-WNLLTAENGKQALDLAQGTPRPDLILLDIMMPGMDGH 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V ++ D G + GA ++ KP E LR +R ++ Sbjct: 68 EVCRQLKADPETRGIPVIFVTAMGDAVSEEQGLQLGAIDYISKPIKPEILRVRVRNHIKL 127 Query: 121 QKSKDENQ 128 ++ + + Sbjct: 128 KRYQSALE 135 >gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes 10403S] gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes FSL J2-003] gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] Length = 236 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 232 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD VR+ R G+ V A EA E E P L++D M + Sbjct: 1 MK-ILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAEN-PELLILDVMMPNMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G D + L +AG AGA+ +L KPF E L +R L Sbjct: 59 GLEVCRTLR--SEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLV 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRASA 121 >gi|218439149|ref|YP_002377478.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171877|gb|ACK70610.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 384 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + ++ + + G+ V +A + A + P+ +++D +M + Sbjct: 7 NILVVDDTPDNLRLLAAMLSKKGYTVRKALNGQIAIATVHS-VPPDIILLDINMPNMNGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++ D+ + ++ D + G ++ KPF E + + Sbjct: 66 QVCQTLKADEQTKDIPIIFISALDDVIDKVKAFNMGGVDYITKPFQGEEVIARIENQLTI 125 Query: 120 -MQKSKDENQFLD 131 QK + + + LD Sbjct: 126 CRQKKQLQQEILD 138 >gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] Length = 223 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD +R + + GF EA +A E C KE + +++D M + Sbjct: 1 MSRLLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKES-FDLIIMDVMMPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + VR++ + V L + I G G + +++KPF+ + L + + + Sbjct: 60 GF-SAVREIRKTSSTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKR 118 Query: 121 QKSKDENQ 128 + + Sbjct: 119 SGGGEAQR 126 >gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae OXC141] Length = 235 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ + + GF T+ +A E E +++++D + + Sbjct: 3 KQVLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + + D + GA+ +L KPF+ L ++ + + Sbjct: 62 IEVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121 Query: 122 KSKDE 126 K + E Sbjct: 122 KGEQE 126 >gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 230 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD VR+ + G+ V A EA E E+E P +++D M + Sbjct: 1 MK-IVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIERE-QPELVILDVMMPRMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G D + L +AG AGA+ +L KPF E L +R L Sbjct: 59 GLEVCRTLR--GSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLL 116 Query: 119 QMQKSKD 125 + ++ Sbjct: 117 RRAAAES 123 >gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24] gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24] gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24] Length = 226 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V AT+ + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|255007701|ref|ZP_05279827.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 1362 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+++ + VR+ R LF + V EA E + KE +P+ ++ D M Sbjct: 1114 KTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKE-IPDLIISDVMMPVKDG 1171 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ + + L + ++ G+R+GA+ +++KPFN E L+ + L Sbjct: 1172 FACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLIL 1231 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1232 QRERLKR 1238 >gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 238 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + + V A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + ++ R GF V + +A E K PN +V+D + G Sbjct: 5 TKVLVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAF-KTFAPNIVVLDIMLPGADG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ+ +++ + L + + + G GA+ +++KPF + L ++ + + Sbjct: 64 WQVCREIRQV---SNIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLR 120 Query: 120 MQKSKD 125 + K+ Sbjct: 121 RYEHKE 126 >gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 225 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A + EA E E E +P+ ++ D M + Sbjct: 20 KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEHE-VPDMIICDVMMPEMDG 78 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ VRQ + + V +L + + G GA+ +++KPF E L + + Sbjct: 79 YTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 138 Query: 120 MQKSKDENQ 128 E+Q Sbjct: 139 QTIRWKEHQ 147 >gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 232 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA E + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQS-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---YHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 235 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 11/132 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-------KELLPNYLVID 53 M +LLV+ +R+ G+ V A A + + + + +++D Sbjct: 1 MGQILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILD 60 Query: 54 ESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 + G ++ +R+ G+ V V L + + G GA+ +L KPF L Sbjct: 61 IMLPGINGIDLCRFIRR--EGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELI 118 Query: 112 FAMRELPQMQKS 123 R L + Q+ Sbjct: 119 ARCRALLRRQRL 130 >gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. 16M] gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella melitensis bv. 1 str. 16M] gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] Length = 255 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 33 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 91 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 92 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151 >gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 239 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R R GF EA S EA E E+ ++D + G+ Sbjct: 1 MQKILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGID 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ + + L + ++G GA+ +++KPF+ + L + L Sbjct: 61 GFEVCRILK--ERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALI 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 226 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+++ + + ++ R F + G V A + + +++D + + F Sbjct: 2 RLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKY-DCVILDIMLPEMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G DV V L + E + G GA+ +L KPF+ + L + L + Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 123 SKDE 126 + Sbjct: 121 DQRR 124 >gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1002] gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1002] Length = 233 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+++ + ++ G A + +A ++LP+ +++D + G + Sbjct: 4 SILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAHNLI-SDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 SFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|189463997|ref|ZP_03012782.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM 17393] gi|189438570|gb|EDV07555.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM 17393] Length = 1329 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ F+ + + AT+ E E K +P+ ++ D M + Sbjct: 1076 ILIVEDNDDIREYIATSFS-NNYHIMTATNGKEGIEQALK-YIPDIIISDIMMPVMDGIE 1133 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1134 LCKLIKEDVRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLHSRVHNLLESR 1193 Query: 122 KSKD 125 K Sbjct: 1194 KKLA 1197 >gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis EO147] gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis C6786] Length = 233 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ + ++ G A + +A + ++LP+ +++D + G + Sbjct: 4 NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQA-QSLISDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 866 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + RK+ G+ V E A E KE LP +++D M + Sbjct: 572 MSKILVVDDNLNTRKMLCRHLTKSGYEVSETDRGKIALEKI-KEELPEVILLDVMMPDMT 630 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ P +++ L D + I G GA+ ++ KPF+ L +R + Sbjct: 631 GFEVCQQLRKTPQYELIYIIMLTALTDSKYKIEGLDKGADDYVTKPFDISELLARIR-VG 689 Query: 119 QMQKSKDENQFLDAI 133 + K +D + Sbjct: 690 ERTAIKKREATIDGL 704 >gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196] gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291] gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196] gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291] Length = 223 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ + G+ A EA + + +++D M + Sbjct: 1 MAKILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNN-IDLMILDIMMPYLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R T++ + L + + E + G GA+ ++ KPF+ + L + L + Sbjct: 60 GFSVC-RVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118 >gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118] gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 243 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D +R + R GF V +A + +V+D M G Sbjct: 10 KILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKS-LTRLLVREPVDLIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 69 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 123 SKD 125 +++ Sbjct: 129 TQE 131 >gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates and phosphorylates sensor PhoR [Acinetobacter sp. ADP1] gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter sp. ADP1] Length = 236 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60 +L+VD +R++ + GF +A +A + + P +++D + G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQ-RPALILLDWMLPGGVSGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ +++ V L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 121 QKSKDENQFLDA 132 + + ++ +DA Sbjct: 125 ANALNGDKVIDA 136 >gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718] gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding [Nitrosomonas europaea ATCC 19718] Length = 240 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ ++++ + + G+ S +A E+LP+ +++D + G + Sbjct: 4 TVLVVEDESAIQELIAYNLRNAGYTAVCTNSAEQA-AAMVNEVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ P + V L VD + G GA+ ++ KPF+ L ++ + + Sbjct: 63 ELARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVLRR 122 Query: 121 QKSKDENQFLD 131 + ++ LD Sbjct: 123 SLPEASDEILD 133 >gi|294673053|ref|YP_003573669.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] gi|294472787|gb|ADE82176.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] Length = 1314 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD S +R+ + F D + + A EA ++ + ++ D M + F Sbjct: 1066 LIVDDSEDMRQFLENNFKDK-YHIITAGDGIEALHLLQQH-QVSIIISDWMMPRMDGAEF 1123 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 VRQ PL + + L + D + G GA++++ KPF+ + L +R + Q+++ Sbjct: 1124 CRRVRQNPLTSHIPFVMLTAKTDDNSKVKGMDVGADAYIEKPFSVQYLEACIRNILQIRR 1183 Query: 123 SKDE 126 E Sbjct: 1184 QLME 1187 >gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD VR+ R G+ V A EA E E P L++D M + Sbjct: 1 MK-ILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAEN-PELLILDVMMPNMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G D + L +AG AGA+ +L KPF E L +R L Sbjct: 59 GLEVCRTLR--SEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLV 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRASA 121 >gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 236 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA + E E P +V+D + Sbjct: 3 QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVEDE-QPELIVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQ 128 K E + Sbjct: 120 RSKFVSEIE 128 >gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 225 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + + G+ A + P+ +++D + G++ Sbjct: 1 MPTVLVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARR-CKPDLILLDLMLPGMM 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ L + V L + + G GA+ +++KPF+ L +R + Sbjct: 60 GTEVCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVL 119 Query: 119 QMQ 121 + + Sbjct: 120 RRK 122 >gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB [Rhodopseudomonas palustris CGA009] gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ G+ V +A KE +P+ +V+D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRM-KERIPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKDENQFLD 131 + L Sbjct: 123 AAPERLATVLA 133 >gi|294776315|ref|ZP_06741797.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294449832|gb|EFG18350.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1329 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ +R+ H ++ + V T+ EA + E P+ ++ D M + Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIP-EFKPDLVLSDIMMPEMRG 1128 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ L + + V L D + ++ G GA+ +L+KPFN L+ ++ + Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188 Query: 120 MQKSKD 125 + Sbjct: 1189 NRALLR 1194 >gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 230 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R+ G+ V EA S EA P+ +++D + + Sbjct: 6 KTILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHG-PDVILLDLGLPDMDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +P+ V L + + GA+ +L KPF+ L +R + Sbjct: 65 -EELLRTLPVWLRAKVIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRR 122 >gi|254885151|ref|ZP_05257861.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319641338|ref|ZP_07996033.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254837944|gb|EET18253.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387019|gb|EFV67903.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1329 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ +R+ H ++ + V T+ EA + E P+ ++ D M + Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIP-EFKPDLVLSDIMMPEMRG 1128 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ L + + V L D + ++ G GA+ +L+KPFN L+ ++ + Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188 Query: 120 MQKSKD 125 + Sbjct: 1189 NRALLR 1194 >gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length = 235 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A+S + + P+ +V+D M G+ F Sbjct: 9 RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVART-FRPDAIVLDVMMPGMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D V +L + + I+G GA+ ++ KPF+ E + +R + + Sbjct: 68 GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 125 >gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 225 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFK-FVLLDIMMPTMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + + Q Sbjct: 117 RRTNQRTQIQ 126 >gi|150006322|ref|YP_001301066.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149934746|gb|ABR41444.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1329 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ +R+ H ++ + V T+ EA + E P+ ++ D M + Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIP-EFKPDLVLSDIMMPEMRG 1128 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ L + + V L D + ++ G GA+ +L+KPFN L+ ++ + Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188 Query: 120 MQKSKD 125 + Sbjct: 1189 NRALLR 1194 >gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA K+ + +++D + + Sbjct: 3 KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAL-VFAKQKEYDVILLDVMLPRMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +++ V L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQQIRE---FSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 238 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+VD +R++ + G++V EA + +A E + +++D M L Sbjct: 6 SVLIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMAL-EKDYHCILLDIMMPEKDGL 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A +R+ + L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCAELREK---KTTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRR 121 >gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI] gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|297627027|ref|YP_003688790.1| Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922792|emb|CBL57370.1| Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 225 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ R + + GF V A + ++ + +++D M G Sbjct: 1 MSRILIIEDEESYRDAMSFMLDREGFAVAAAPDGEQGLAEFDRNGA-DLVLLDLMMPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +RQ +DV V + + G GA+ ++ KPF++ L +R + Sbjct: 60 GIEVCKALRQR---SDVPVIMVTARDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVL 116 Query: 119 QMQKSKD 125 + ++++ Sbjct: 117 RRGRAEE 123 >gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 246 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A EA ++ P+ +++D + + Sbjct: 22 RVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEAL-RAARDFRPDAVILDVMLPDMDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R DV V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 81 TVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 138 >gi|146341429|ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ORS278] gi|146194235|emb|CAL78257.1| response regulator PleD (with diguanylate cyclase and response regulator receiver domains) [Bradyrhizobium sp. ORS278] Length = 473 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A++ EA + C++ + +++D M + F Sbjct: 4 RILVVDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAEC-DIILLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 78.3 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + V EA + + +D L Sbjct: 157 RILLVDDRPSSYERLGPMLATE-HSVDVEPHPAEAVFNAADGNYDLVIVSLDLDDFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V + + E + + G G N +LL+P ++ L R + Sbjct: 216 LCSQLRSLERTRHVPILAI-AEAENNSRLLRGLEIGVNDYLLRPVDKNELLARARTQIRK 274 Query: 121 QKSKDENQ 128 ++ D + Sbjct: 275 RRYTDHLR 282 >gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae] Length = 253 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L VD VR+ R + G+ V A EA E ++ P+ LV+D M + Sbjct: 27 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARD-RPDALVLDVMMPRLDGL 85 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L +R L + K Sbjct: 86 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 145 Query: 123 SKDENQ 128 D + Sbjct: 146 PDDAAE 151 >gi|53804897|ref|YP_113275.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] gi|53758658|gb|AAU92949.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] Length = 243 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + FG A + E + +V+D + G Sbjct: 6 TRILIVDDDVEIRNLLGGYLSRFGMEAVGVHDGA-AMKKALTESSFDLVVLDLMLPGEDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + +D+ V L D + G GA+ ++ KPF L ++ + + Sbjct: 65 LTLC-RSLRGESDIPVIMLTARGDPMDRVVGLELGADDYVAKPFEPRELVARIQSILRRA 123 Query: 122 KSKDENQ 128 + + E + Sbjct: 124 RHEREPE 130 >gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 239 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L D + ++ + V A+ +A EK+ LP+ +++D M V F Sbjct: 8 ILTADDDSQLLRLVSRNLELEDYEVLTASDGEQALAIVEKQ-LPDLILLDVMMPRVDGFT 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H+R+ + V + + + G GA+ +L KPF+ E L +R + + Sbjct: 67 VCKHIRE---FSMVPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVRAVLRRS 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|291519045|emb|CBK74266.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 223 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + R G+ V EA +A + ++ + +++D M + Sbjct: 1 MKKILVVDDEEKIRSIIRKYGEFEGYEVSEACDGMDAIQKVKENSDYDVIIMDVMMPELD 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + ++++ D+ V L + I G AG + +++KPF+ + L + + Sbjct: 61 GFSACSEIKKI---KDIPVIMLSARGEEYDRIHGFEAGVDDYVVKPFSPKELMMRVNVVT 117 Query: 119 QMQKSKD 125 K + Sbjct: 118 SRSKPEA 124 >gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 230 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + +I G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD ++ K R G V A EA E +K + +++D + Sbjct: 1 MPRVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEY-DIVLLDVMLPKLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +D+ + L + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GYEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAII 116 Query: 119 QMQKSKDENQFLDA 132 + + +A Sbjct: 117 RRSSKNKRLKKEEA 130 >gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus caprae C87] gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus caprae C87] Length = 236 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA + E+E P +V+D + Sbjct: 3 QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEE-QPELIVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQ 128 K +E + Sbjct: 120 RSKFVNEIE 128 >gi|78778516|ref|YP_396628.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712015|gb|ABB49192.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 260 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M S+LL++ +R + GF V +A + + + P+ +++D + Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L +R+ +++ + + + + G +GA+ ++ KPF+ E L ++ L Sbjct: 60 DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119 Query: 118 PQMQKSKDEN 127 + N Sbjct: 120 LRRTNRAQLN 129 >gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL103PA1] Length = 232 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD VR+ G+ V EA P+ +++D M + Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHL-SGSHPDAVIMDVMMPRLDGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A G DV + L + + G AGA+ +++KPF + L +R L + + Sbjct: 64 ATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123 Query: 124 K 124 + Sbjct: 124 E 124 >gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRVR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] Length = 243 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK + P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D V +L D + I G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] Length = 255 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 33 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 91 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 92 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151 >gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99] Length = 236 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD ++ K + V A EA KE + +++D + Sbjct: 1 MKKVLVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLA-KENQYDIILLDVMLPKLT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ + V + L + D I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GYEVCQAIRE---FSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|145225002|ref|YP_001135680.1| multi-sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] gi|145217488|gb|ABP46892.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK] Length = 1361 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D + +R+ L G+ V +A E E P+ ++ D M L Sbjct: 605 RVLVADDNADMREYLGRLLRSDGYAVEAVVDGWQALEAIRAEP-PDLVISDVMMPRLDGL 663 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R V V L E I+G +AGA+ +L+KPF L +R Q+ Sbjct: 664 GLVAELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRANIQL 723 Query: 121 QKSKD 125 + ++ Sbjct: 724 ARLRE 728 >gi|119485362|ref|ZP_01619690.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457118|gb|EAW38244.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 372 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L VD + + G V A E E PN +++D M + Sbjct: 12 ILAVDDLPDNLFLLKLALEQEGHNVVLVEDGKTALEQIEASP-PNLVLLDVMMPEMDGYE 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P + + + + ++ G AGA+ F+ KP + L+ +R L +++ Sbjct: 71 VTKRIRSNPKYPYIPILLITAH-EQSSVVEGLDAGADDFIRKPVQIDELQARVRSLLRLK 129 Query: 122 KSKDENQ 128 +S D+ + Sbjct: 130 QSIDQRE 136 >gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 238 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL + +R GF V EA++ EA ++E P+ L++D M + Sbjct: 6 KRILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQE-APHLLILDVMMPRMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VRQ + V + L +A GA+ +L KPF E L +R + Sbjct: 65 LEVCQRVRQS---STVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALR 121 Query: 120 MQKSKD 125 ++ Sbjct: 122 RTNWEE 127 >gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 247 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ G+ V A EA + ++ P+ +V+D M V Sbjct: 2 RVLVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRD-RPDIVVLDVMMPRVDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 A R G D+ V L ++G GA+ +L+KPF E L +R L Sbjct: 61 EACRRLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRAL 115 >gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes Clip81459] gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-064] gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-175] gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816] gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220] Length = 236 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|307153766|ref|YP_003889150.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983994|gb|ADN15875.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 374 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 4/129 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD S + + + + G V A A +E LP +++D M + F Sbjct: 15 ILVVDDSPDNLFLIQTILEEQGLKVVLAQDGLAALNRI-QESLPKLILLDVMMPKMDGFE 73 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + + + G AGA+ F+ KP + + L +R L +++ Sbjct: 74 VTRRIRANENLPFIPILLITAYDQPS-AVKGLDAGADDFIRKPVDVDELLARVRSLLRLK 132 Query: 122 KSKDENQFL 130 S D+ + + Sbjct: 133 HSVDKQEQM 141 >gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 248 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 5 KRILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + ++ ++A Sbjct: 124 DALAKDSRIEA 134 >gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 226 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + D GF + + + + + + +++D + G Sbjct: 5 TILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPV-DLILLDIMLPGKDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR + + V + L +V+ I G GA+ ++ KPF+ L ++ L + Sbjct: 64 QVCKEVRTI---SQVPIIMLTAKVEEIDRILGLELGADDYICKPFSPRELVARVKALLRR 120 Query: 121 QKSKDEN 127 + EN Sbjct: 121 SSLRQEN 127 >gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter winogradskyi Nb-255] gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 234 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ G+ V EA KE +P+ +V+D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRL-KERVPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122 >gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum ATCC 824] gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum EA 2018] Length = 233 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + N+ GF V +A + EA E K+ +++D M + Sbjct: 4 RTVLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEIL-KDTEVQLVLLDIMMPKMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 63 ITTCMKIRED-KNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRR 120 >gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2] gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2] Length = 244 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +R + R + GF V A A + +V+D + G Sbjct: 11 RIVVVDDDARIRDLLRRYLSQEGFEVLLAEDAK-ALNRVLTRDTVDLIVLDLMLPGEDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L +V+ I G GA+ +L KPFN L + + + + Sbjct: 70 SICRRLRAANDITPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRRR 128 >gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB [Acidithiobacillus caldus ATCC 51756] gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB [Acidithiobacillus caldus ATCC 51756] Length = 247 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++++ R GF V SV +A E ++ +P+ +V+D + G Sbjct: 12 RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHL-RDPMPHLIVLDWMLPGESGV 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L + + G +GA+ +L KPF+ L ++ L + Sbjct: 71 AWCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRR 130 >gi|256396664|ref|YP_003118228.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362890|gb|ACU76387.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 273 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M S+L+V+ + + GF A A +E LP+ +V+D + G Sbjct: 1 MTSILVVEDEPTLAEAIAARLRAEGFATHLAGDGPAAVRTA-QEHLPDLIVLDVMLPGFD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ V V + D +I G R GA+ +L KPF+ L + L Sbjct: 60 GLEVCRRIQAE---RAVPVLMVTARDDESDLIEGLRTGADDYLTKPFSMRELIARVHALL 116 Query: 119 QMQKSKDEN 127 + + E Sbjct: 117 RRVERAAEL 125 >gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] Length = 225 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFK-FVLLDIMMPTMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + + Q Sbjct: 117 RRTNQRTQIQ 126 >gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 239 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L++D + ++ G+ V +A EA + E + + ++D + G+ Sbjct: 4 KNILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDV-DMFIVDIMLPGMDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++R V +L + + + G GA+ ++ KPF+ +R + + Sbjct: 63 FELVRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAIFR 122 Query: 120 MQKS 123 + Sbjct: 123 RIQQ 126 >gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua Clip11262] gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua Clip11262] Length = 236 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 8/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ L GF A + EA E ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QMQKSKDEN--QFLDA 132 + +E Q L+A Sbjct: 117 RRGGESEELLPQVLEA 132 >gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + R G+ V A +A E +E P+ +V+D + G+ Sbjct: 1 MSAILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIA-RERPPDLVVLDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ +DV + L +AG AGA+ +L+KPF E L +R + Sbjct: 60 GLEVA-RRLRAASDVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRR 118 Query: 121 QKSKDENQFL 130 ++ +D L Sbjct: 119 RQREDTATVL 128 >gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ + + V A A + ++ + +++D + G+ Sbjct: 1 MTKILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQ-QFDAILLDLMLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V + + D + G GA+ ++ KPF+ + ++ + + Sbjct: 60 GMTVLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRR 119 Query: 121 QK 122 + Sbjct: 120 SQ 121 >gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 222 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + + G++ FEA+ E E + +++D M G Sbjct: 1 MQKILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKL-TNHSFDLILLDVMMPGKD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + V + + + G GA+ ++ KPF+ + L ++ + + Sbjct: 60 GF-QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKR 118 >gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 233 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLV+ + ++ F F V EA +E +P+ +++D +E + Sbjct: 5 RMLLVEDDAALAELLIWHFKREDFEVSHTVDGEEAL-LLAQETVPDIVLLDWMVESLSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R++ +V + L + E + G GA+ ++ KPF+ L + + + Sbjct: 64 EVCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123 Query: 121 QKSKDENQFL 130 + + L Sbjct: 124 VRPALAGETL 133 >gi|300865283|ref|ZP_07110097.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300336756|emb|CBN55247.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 498 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + D G+ V A S PN +++D M + Sbjct: 10 KILIVDDQPSNLRFLSKILTDQGYNVKRAISGQLGLNAALGSP-PNLILLDIMMPDMDGY 68 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ M V + +L D + I + G ++ KPF E + + + Sbjct: 69 ELCQKLKSMESTRSVPIIFLSGLDDVQYKIKAFQVGGVDYITKPFQVEEVLARIDTQIAL 128 Query: 121 QKSKDENQFLDAI 133 QK +++ + +A+ Sbjct: 129 QKLQNKLEEQNAL 141 >gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] Length = 223 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R++ N GF + EA++ EA + E E + +ID M + Sbjct: 1 MKPRVLVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENE-YVDLGIIDVMMPVM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F V + D+ V L + + + + G G + +++KPF+ L ++ + + Sbjct: 60 DGF-ELVENLKEFKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|126659636|ref|ZP_01730766.1| hybrid sensory kinase [Cyanothece sp. CCY0110] gi|126619082|gb|EAZ89821.1| hybrid sensory kinase [Cyanothece sp. CCY0110] Length = 377 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + ++ + ++ G+ V +A + A ++ + +++D +M + Sbjct: 7 NILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTI-HQVPADLILLDINMPSMNGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P+ D+ + ++ D + G ++ KPF E + + + Sbjct: 66 EVCQQLKNDPITQDIPIIFISALDDVLDKVKAFDLGGVDYITKPFQAEEVIARIENQLTI 125 Query: 121 QKSKDENQF 129 Q+ K + Q Sbjct: 126 QRQKKQLQQ 134 >gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L] gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L] Length = 225 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A] gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A] gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 243 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK + P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V +L D + I G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|260431985|ref|ZP_05785956.1| response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260415813|gb|EEX09072.1| response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 421 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S + R++ +GF V EA S EA + C ++ LP+ ++ D M G+ Sbjct: 17 QKVLVVDDSRLQRRILVASLKRWGFTVVEADSGEEALDLC-RQGLPDLVLSDWVMPGMGG 75 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 LEF R+M + L + + +++ G AGA+ FL+KP + LR + Sbjct: 76 LEFCRAFREMEKDQYTYFILLTSKSEKQEVARGLDAGADDFLIKPLEADELRARISAGAR 135 Query: 117 LPQMQKSKDENQFL 130 + MQ+ E L Sbjct: 136 ILGMQRELSEKNRL 149 >gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 260 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M S+LL++ +R + GF V +A + + + P+ +++D + Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L +R+ +++ + + + + G +GA+ ++ KPF+ E L ++ L Sbjct: 60 DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119 Query: 118 PQMQKSKDEN 127 + N Sbjct: 120 LRRTNRAQLN 129 >gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14] gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14] Length = 236 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + K+ + + GF T+ +A E E +++++D + + Sbjct: 3 KQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + + D + GA+ +L KPF+ L ++ + + Sbjct: 62 MEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121 Query: 122 KSKDE 126 K + E Sbjct: 122 KGEQE 126 >gi|150025574|ref|YP_001296400.1| two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] gi|149772115|emb|CAL43591.1| Two-component system response regulatory protein [Flavobacterium psychrophilum JIP02/86] Length = 229 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + V + + + + A EA + + V D M + Sbjct: 1 MKKVLLAEDDFDFADVLKQYLELYNYHITWAKDGEEAL-LLFENETFDICVFDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + + +L E + G + GA+ +++KPF + L + + + Sbjct: 60 GFTLAQKIIDMNPETPFVFLTARKLKEDKLKGLQLGADDYIVKPFEADELVLRLNNILKR 119 Query: 121 QKSKDE 126 + K++ Sbjct: 120 GEQKNQ 125 >gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630] gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile] Length = 223 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ + G+ A EA + + +++D M + Sbjct: 1 MAKILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNN-IDLMILDIMMPYLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R T++ + L + + E + G GA+ ++ KPF+ + L + L + Sbjct: 60 GFSVC-RVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118 >gi|86607232|ref|YP_475995.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86555774|gb|ABD00732.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 332 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 16/146 (10%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE---KELLPNYLVIDESMEG-- 58 + ++D + R+ + + V S A E + + P+ ++ D M G Sbjct: 8 IWVIDDDPVNRRYIGEVLKSSNYRVESWESGQLAWEHLQTLDESEWPDLIICDWVMPGLS 67 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E ++ +P G ++ L + E + G AGA+ F+ KP + E LR +R Sbjct: 68 GVELCRRLKNLPAGQFIYFILLTARSEVEDRVQGLDAGADEFIAKPIDPEELRARVRAGL 127 Query: 119 QMQK-----------SKDENQFLDAI 133 ++Q+ + N+ L+++ Sbjct: 128 RLQRLTQALAQANRQLRARNELLESL 153 >gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium] gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium] Length = 249 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LL+VD + +RK+ + G+ V A + EA + + +++D M Sbjct: 14 LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHS-IDLIILDVMMPKLDGYG 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ +D+ + L D + G GA+ +++KPF+ L ++ + + Sbjct: 73 VCQEIRKE---SDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRRI 129 Query: 122 KSKD 125 ++++ Sbjct: 130 QTRN 133 >gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D +R++ + D GF V EA + +A E +E + V+D M + Sbjct: 1 MNKILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEK-IDLCVLDIMMPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + D+ + L + + + + G G + +L KPF + L ++ L + Sbjct: 60 GYEFCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 236 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + DV + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635] gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635] Length = 244 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA++ EA + + +++D + + Sbjct: 8 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNY-ACILLDLMLPEMDGIQ 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + L + + + G +GA+ +++KPF+ + ++ L + +S Sbjct: 67 VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125 >gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 225 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] Length = 237 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + + N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|218778183|ref|YP_002429501.1| response regulator receiver modulated serine phosphatase [Desulfatibacillum alkenivorans AK-01] gi|218759567|gb|ACL02033.1| response regulator receiver modulated serine phosphatase [Desulfatibacillum alkenivorans AK-01] Length = 445 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D V+ + L + +G+ V A +A E + P VID M G+ Sbjct: 44 MK-ILVADDDRTVQIALKTLLSKWGYEVVTAQDGAQAWEILQDPKAPRLAVIDWMMPGME 102 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ L + ++ L + +++ G AGA+ F+ KPFN L+ + Sbjct: 103 GPALCKKIRQSSLSSYTYLILLTAKTSKSELMEGLEAGADDFISKPFNAGELKARITAAE 162 Query: 119 QMQKSKDENQ 128 ++ + E + Sbjct: 163 RILSLEKELK 172 >gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 233 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + + R+ G+ V EA E +E LP+ L++D + G Sbjct: 1 MPKVLIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEA-EIRLRESLPDLLLLDWMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + V L + + I G GA+ +++KPF+ L +R + Sbjct: 60 GIELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAIL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|94264856|ref|ZP_01288631.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454677|gb|EAT04942.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 409 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 6/135 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + I + + + + + A S +A E P+ +++D M G+ Sbjct: 15 TILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDIMMPGMDGH 73 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P D+ V ++ D G + GA ++ KP E LR +R ++ Sbjct: 74 EVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKPEILRVRVRNHIKL 133 Query: 121 ---QKSKDENQFLDA 132 Q + +E + A Sbjct: 134 KLYQSALEEARRRAA 148 >gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 239 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + + + G+ V AT+ E + P +++D ++ Sbjct: 1 MLRILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRA-FQPGLVILDLNLPDVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +++ V+V L V+ + G + GA+ +L KPF+ L+ ++ + Sbjct: 60 GYDLCQQMQKETG---VYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAIL 116 Query: 119 QMQKSKDE 126 + +++ E Sbjct: 117 RRGRTRTE 124 >gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 231 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLVD +R+ + + GF V A++ E + ++ P+ ++ D M + Sbjct: 5 LLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQST-PDLVISDVMMPQVDGYQ 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R+ P + V +L + I G +AG +++L KPF+ + L + L + Sbjct: 64 FLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLLIRR 123 Query: 122 KSKDE 126 SK + Sbjct: 124 NSKPQ 128 >gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 277 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD VR+V G+ V A EA E +E P+ +V+D + + F Sbjct: 33 TLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRES-PDLVVLDVMLPKLDGF 91 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 92 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 148 >gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL S4-171] Length = 240 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEK-PDLIVLDLMLPEMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + DV + L + + I G GA+ ++ KPF+ + ++ + + + Sbjct: 66 EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 123 SKDE 126 K E Sbjct: 126 GKAE 129 >gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA [Mycobacterium marinum M] gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M] Length = 232 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA E P+ LV+D M + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMI-ASDRPDALVLDVMMPRLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L MR L + K Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 123 SKD 125 +D Sbjct: 123 PED 125 >gi|94264441|ref|ZP_01288230.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455131|gb|EAT05353.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 409 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 6/135 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + I + + + + + A S +A E P+ +++D M G+ Sbjct: 15 TILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDIMMPGMDGH 73 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P D+ V ++ D G + GA ++ KP E LR +R ++ Sbjct: 74 EVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKPEILRVRVRNHIKL 133 Query: 121 ---QKSKDENQFLDA 132 Q + +E + A Sbjct: 134 KLYQSALEEARRRAA 148 >gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4] gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4] Length = 232 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVL 60 ++L+VD +R + D GF +FEA++ EA + +++D M + Sbjct: 5 KTILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDLD 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + + + L E + G GA+ +L KPF E L ++ L + Sbjct: 65 GFEVC-KIVREYSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLRR 123 >gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20] gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20] Length = 222 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + + G++ FEA E E + +++D M G Sbjct: 1 MQKILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKL-TNHSFDLILLDVMMPGKD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + V + + + G GA+ ++ KPF+ + L ++ + + Sbjct: 60 GF-QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKR 118 >gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] Length = 225 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|298531125|ref|ZP_07018526.1| response regulator receiver modulated serine phosphatase [Desulfonatronospira thiodismutans ASO3-1] gi|298509148|gb|EFI33053.1| response regulator receiver modulated serine phosphatase [Desulfonatronospira thiodismutans ASO3-1] Length = 381 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD S + ++ + D + V A +A + + P+ +++D M G Sbjct: 10 KILVVDDSPLNIRILSSILKD-DYRVQTALHGDKALQIIFGDDPPDLILLDIMMPGIDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + V ++ D E G GA ++ KPF+ ++ ++ ++ Sbjct: 69 EVCRRIKADPGTAGIPVIFVTGRSDVEDEAYGLSLGAVDYITKPFHFPIIKARVKNHLEL 128 Query: 121 QKSKDENQ 128 ++K Q Sbjct: 129 LQAKRSAQ 136 >gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] Length = 234 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F +A PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMMVHDGEKAL-IAYDTYQPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R ++V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRAK---SNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLR 120 Query: 120 MQKS 123 ++ Sbjct: 121 RYQA 124 >gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51] gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 231 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL+ D + + + G+ A C A E ++L P+ +++D M Sbjct: 1 MLTLLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELF-QQLQPDLVLLDVMMPKVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ ++V + + + + I G GA+ +++KPF+ + +R + Sbjct: 60 GFEVCREIRK---TSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAIL 116 Query: 119 QMQKSKDENQ 128 + DE + Sbjct: 117 RRISQNDEEK 126 >gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A + EA E E + +P+ ++ D M + Sbjct: 20 KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILE-QDVPDMIICDVMMPEMDG 78 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ VRQ + + V +L + + G GA+ +++KPF E L + + Sbjct: 79 YTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 138 Query: 120 MQKSKDENQ 128 E+Q Sbjct: 139 QTIRWKEHQ 147 >gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC 35316] gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC 35316] Length = 235 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + + R D G+ + A EK+ + +++D + Sbjct: 1 MKQILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSW-DAVILDLMLPSVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQM + V + I G GA+ +L KPF+ + L ++ L Sbjct: 60 GLEICRRIRQM--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 117 Query: 119 QMQKSKDENQ 128 + Q++ + Q Sbjct: 118 RRQQAMGQAQ 127 >gi|126695485|ref|YP_001090371.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542528|gb|ABO16770.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 260 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M S+LL++ +R + GF V +A + + + P+ +++D + Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L +R+ +++ + + + + G +GA+ ++ KPF+ E L ++ L Sbjct: 60 DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119 Query: 118 PQMQKSKDEN 127 + N Sbjct: 120 LRRTNRAQLN 129 >gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] Length = 226 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + +V G+ V +A E E + +++D + + Sbjct: 1 MPKILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGG-FDLVLLDIMLPSMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V V + ++G +GA+ ++ KPF E L +R + Sbjct: 60 GM-EVLRRLRRESQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRK 118 Query: 121 QKSKDENQFLDA 132 + + E+ L A Sbjct: 119 RPVRQESAVLTA 130 >gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 1253 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +H +R L N + F + A + +A + +P+ ++ D M + Sbjct: 646 TRILIVDDNHDMRDYLVRLLNPY-FTIDTALNGQDALLKIGAQ-MPDLVLSDVMMPVMDG 703 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R + V +L E I G GA+ +L+KPF+ L +R Sbjct: 704 KAMLERIRSNENTLRLPVIFLSARAGEEARIDGLEMGADDYLVKPFSAAELLTKVRAQIH 763 Query: 120 MQKSK--DENQF 129 + KS+ E Q Sbjct: 764 ISKSRGYAEQQL 775 >gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1991 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + +R L V AT+ +A E + P+ ++ D M G+ F Sbjct: 1620 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQP-PDLVLADVMMPGLDGF 1678 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + L E + G ++GA+ +L+KPF+ L +R M Sbjct: 1679 GLVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDM 1738 Query: 121 QKSKDE 126 + + E Sbjct: 1739 ARVRRE 1744 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LL D + +R L + + V + A P+ ++ D M G L Sbjct: 605 RILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANP-PSLIISDVMMPGVNGL 662 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R + + L E I G +GA+ +L+KPF+ + L + L + Sbjct: 663 ELVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTV 722 Query: 121 QKSKD 125 + + Sbjct: 723 SQLRQ 727 >gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 239 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + + G+ V A EA + E P+ +++D + G + Sbjct: 4 KILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSE-QPDLILLDLMLPGKDGM 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 DVCREVRAKLE---TPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRR 119 Query: 121 QK 122 Q+ Sbjct: 120 QQ 121 >gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 233 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD + ++ + + GF V AT+ +A + +E P+ +++D + + Sbjct: 1 MPLILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIA-REKKPDLIILDVMLPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ V L + + + G GA+ ++ KPF+ + ++ Sbjct: 60 GYDVLQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARL 119 Query: 119 QMQKS 123 + + + Sbjct: 120 RRKSA 124 >gi|186683964|ref|YP_001867160.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186466416|gb|ACC82217.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 440 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + + GF V A + E E LP+ +++D M G+ F Sbjct: 18 ILVVDDTTTNLGIVFDILTNVGFKVVTENDGSRALKQAE-EQLPDLILLDVMMPGIDGFE 76 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ D+ V ++ D + G GA ++ KPFN E L ++ Q++ Sbjct: 77 TCKRLKENSATYDIPVIFMTANSDTNSKVRGLNIGAVDYITKPFNEEELLARIKTHLQLR 136 Query: 122 KSKDENQFLDA 132 + A Sbjct: 137 NLTKTLEKRVA 147 >gi|330817959|ref|YP_004361664.1| Putative two-component system, response regulator [Burkholderia gladioli BSR3] gi|327370352|gb|AEA61708.1| Putative two-component system, response regulator [Burkholderia gladioli BSR3] Length = 241 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L + + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|319642327|ref|ZP_07996985.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317386050|gb|EFV66971.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1343 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 64/144 (44%), Gaps = 15/144 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ + +R+ + + + V A E E+E +P++++ D M + Sbjct: 1087 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEE-IPDFIITDIMMPRMDGI 1144 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I H+++ D+ + L + E I + G + ++ KPF+ + L+ + L + Sbjct: 1145 ELIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1204 Query: 121 QK-----------SKDENQFLDAI 133 +K ++ + + L+A+ Sbjct: 1205 RKVLQSAFLSKYGAQPKKEPLEAV 1228 >gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC] gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112] gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC] gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + + E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVD-EYDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 DIVKKAE 127 >gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 241 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA++ EA E + +++D + + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNY-ACILLDLMLPEMDGIE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + + L + + + G +GA+ +++KPF+ + ++ L + +S Sbjct: 64 VASKLRE-HKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 124 KDENQ 128 + Q Sbjct: 123 ANSEQ 127 >gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 219 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEF 62 LLVD +R++ ++FG+ EA + +A + E +++++D M + +E Sbjct: 2 LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHY-DFVILDIMMPEMNGIEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + +L + + + G R GA+ +++KPF+ L M + + Sbjct: 61 CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLE-EKEFDLIILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRE-NRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862] Length = 237 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+VD + + + GF V ATS EAR + +++D + G Sbjct: 1 MATILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHP-IDLMLLDVMLPGKS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +R + + + D I G GA+ ++ KPF+ + +R + Sbjct: 60 GVDLTRELRGEQN--RIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVL 117 Query: 119 QMQKSKDENQ 128 + + E Q Sbjct: 118 RRLDKQQEPQ 127 >gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ H + + R D G+ + A + E + + +++D + Sbjct: 7 MKQILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPW-DAVILDLMLPNVD 65 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQM + + + I G GA+ +L KPF+ + L ++ L Sbjct: 66 GLEICRRIRQM--TRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 123 Query: 119 QMQKSKDENQ 128 + Q++ + Q Sbjct: 124 RRQQAMGQAQ 133 >gi|126656662|ref|ZP_01727876.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. CCY0110] gi|126621882|gb|EAZ92590.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. CCY0110] Length = 1324 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 13/142 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-------KELLPNYLVIDES 55 +LLV+ + +R + L + + + V A EA + + ++ D Sbjct: 945 KILLVEDNADMRNYLKRLLDPY-YEVETANDGLEALTLIRNVSDHNNHGAMYDLILTDIM 1003 Query: 56 ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 M E + +R + + L E I G AGA+ +L KPF+ L Sbjct: 1004 MPRLDGFELLQSLRDNSEMQKIPIIMLSARAGEEFQIEGLEAGADDYLWKPFSARQLLAR 1063 Query: 114 MRELP---QMQKSKDENQFLDA 132 ++ QM++ + N+ L+A Sbjct: 1064 VKTHLKLTQMRQVQALNETLEA 1085 >gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1296 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 4/129 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + +R +L + V A EA E+ +P+ ++ D M Sbjct: 657 VLVVDDNADMRAYIANLLKAH-YEVVLAGDGVEALAAVER-RMPDLVLTDVMMPRLDGFG 714 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +A +R + V L E +AG GA+ +L KPF L ++ ++ Sbjct: 715 LLAALRTDERTRALPVIVLSARAGEEATLAGLERGADDYLSKPFAARELLGRVKANLELS 774 Query: 122 KSKDENQFL 130 + + E L Sbjct: 775 RLRGETARL 783 >gi|119487004|ref|ZP_01620876.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119455933|gb|EAW37067.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 355 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + R + G+ V A++ EA E + L + +++D M + Sbjct: 10 VLIVDDNEVNRDLLARRITREGYQVMLASNGFEALEMMRSQPL-DLVLLDIMMPQMNGYQ 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V+ + + + D E ++ GA +L KPFN LR + + + Sbjct: 69 VLEAVKADQSLRYIPMIMISAVNDIESVVRCIELGAEDYLSKPFNPVLLRARINACLEKK 128 Query: 122 KSKDENQ 128 + +D+ + Sbjct: 129 RLRDQER 135 >gi|119489748|ref|ZP_01622506.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119454322|gb|EAW35472.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 1012 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 2/131 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 + +VD I +V ++ + + + +A+ EA E P+ +++D M + E Sbjct: 639 VFIVDDEPINLQVLMNMLSLHDYTITQASDGEEALAILETGYKPDIILLDVMMPKMTGYE 698 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ T++ + L + + ++ G GAN +L KP ++ L M+ M Sbjct: 699 VTQKIRERFTTTELPILLLTAKTQVQDIVTGLGFGANDYLNKPIAKDELLARMKTQINMC 758 Query: 122 KSKDENQFLDA 132 + + EN L A Sbjct: 759 RLRAENIRLSA 769 >gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 234 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ G+ V A+ A + KE N +++D + + Sbjct: 5 MTKILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKA-KEQQFNAILLDLMLPEMD 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + D + G GA+ ++ KPF+ + ++ + + Sbjct: 64 GMTVLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRR 123 Query: 121 QK 122 + Sbjct: 124 SQ 125 >gi|167574776|ref|ZP_02367650.1| response regulator receiver protein [Burkholderia oklahomensis C6786] Length = 345 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + G+ V A S +A + + + P+ +++D M + F Sbjct: 35 ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 93 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + V ++ + E ++ G R G ++ KP E L + + Sbjct: 94 TCLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRRS 153 Query: 122 KSK 124 +++ Sbjct: 154 RAQ 156 >gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas salmonicida subsp. salmonicida A449] gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas salmonicida subsp. salmonicida A449] Length = 239 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF+V + +A + + +V+D + G Sbjct: 6 KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQA-DRLLTRENFSLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + V L + D I G GA+ +L KPFN L +R + + Sbjct: 65 SICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRH 123 >gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus elongatus PCC 6301] gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein sphR gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942] gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus elongatus PCC 6301] gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 257 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 12/132 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--------PNYLVIDE 54 +L+V+ ++R + + GF V A A + + P+ +V+D Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 55 SME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + L+F +R+ G V + L + + G GA+ +L KPF L Sbjct: 85 MLPAVNGLDFCRLLRRQ--GVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVA 142 Query: 113 AMRELPQMQKSK 124 R L + +++ Sbjct: 143 RCRALLRRSQNQ 154 >gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453] gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453] Length = 231 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 8/130 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M + L+ D + + G+ V +A EA + + + + ++D M Sbjct: 1 MKRITILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSV-DLAILDIMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 E I +R+ + + +L + IAG GA+ ++ KPFN L + Sbjct: 60 LDGYEVIRQIREQ---HHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNA 116 Query: 117 LPQMQKSKDE 126 + + Sbjct: 117 HLRRYMQMSQ 126 >gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD ++ K + V A EA E + + +++D + Sbjct: 1 MKKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDY-DIVLLDIMIPVYT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E VR+ ++V + L + + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GIEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAIL 116 Query: 119 QMQKSKD 125 + K Sbjct: 117 RRSNRKQ 123 >gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 232 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ D + + G+ V +A EA + + + +V+D M Sbjct: 1 MKRISILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQP-IDLVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---YHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 225 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + +I G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|167567698|ref|ZP_02360614.1| response regulator receiver protein [Burkholderia oklahomensis EO147] Length = 347 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + G+ V A S +A + + + P+ +++D M + F Sbjct: 37 ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 95 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + V ++ + E ++ G R G ++ KP E L + + Sbjct: 96 TCLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRRS 155 Query: 122 KSK 124 +++ Sbjct: 156 RAQ 158 >gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51] gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD + V + GF V A + A KE + +++D + G+ Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLF-KENSYDLVLLDLMLPGLSGE 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V L +V+ E + G GA+ ++ KPF+ + ++ + + Sbjct: 61 EICREIRKISA---TPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRR 117 Query: 121 QKSK 124 + Sbjct: 118 THIE 121 >gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 231 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + K+ H F V A + EA E K + P+ +++D + + F Sbjct: 5 KVLVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAK-VSPDLVLLDLMLPDIDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +D+ + L + D I G + G + + KPF+ L +R + + Sbjct: 64 EVCRRIKSR---SDIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRR 120 Query: 121 QKSKDE 126 K E Sbjct: 121 SKGCKE 126 >gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] Length = 260 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A E + + +V+D + G+ Sbjct: 36 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALE-AGTQGAIDLVVLDLGLPGMD 94 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 95 GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 154 >gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] Length = 233 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+++ + + R+ G+ V EA +E +P+ +++D + G + Sbjct: 4 RILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRL-RESVPDLVILDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + V L + + + G GA+ +++KPF+ L +R L + Sbjct: 63 ELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRR 122 Query: 121 QKSKDENQFLDA 132 K + L A Sbjct: 123 AKPEHVATLLRA 134 >gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 225 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ R GF+V EA EA + ++ +++D M + Sbjct: 5 KVLVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + + + G G + ++ KPF+ + L + + + Sbjct: 65 EVCRTIRK---YSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDEN 127 + + Sbjct: 122 SSTMSQE 128 >gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLVD +R+ + + GF V A++ E E ++ P+ ++ D M + Sbjct: 5 LLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNT-PDLVISDIMMPQVDGYQ 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R P + V +L + I G +AG +++L KPF+ + L + L + + Sbjct: 64 FLKQLRDDPRLASLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLLEKR 123 >gi|269964977|ref|ZP_06179142.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B] gi|269830280|gb|EEZ84505.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B] Length = 235 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ GF V A + + P+ +++D M G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHH-PDLIILDIMMPGEDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D+ + L + +AG GA+ ++ K F+ L ++ + + Sbjct: 63 FTLCQKLRKN---SDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119 Query: 120 MQKSKD 125 +S Sbjct: 120 RSQSTA 125 >gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 974 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD I +V + + + + +ATS EA E+ P+ +++D M + Sbjct: 579 TILVVDDEPINLQVVTNHLSVHNYAIVQATSGIEALAKIEQGFKPDLVILDIMMPKMSGY 638 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ T++ + L + ++ G GAN +L KP ++ L ++ + Sbjct: 639 EVCQKIRQCFPATEMPIILLTAKEQVSDLVEGLSLGANDYLTKPISKHELIARIKTHLHL 698 Query: 121 QKSKD 125 Sbjct: 699 SNINR 703 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 9/137 (6%) Query: 3 SLLLVDSSHI----VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 +L+VD +R+ R A + +A E + + ++ D +M Sbjct: 4 KILVVDDEPDLELLIRQKFRKKIRRQELQFIFAHNGVDALETLHAQPDIDMVLTDINMPE 63 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL----RFAM 114 + L D E + GA FL KP + + L + Sbjct: 64 MDGLTLLTHLAQDYPTTKAVILSAYGDMENIRKAMNLGAFDFLTKPIDFQDLDITTHKTL 123 Query: 115 RELPQMQKSKDENQFLD 131 + Q K+ + ++L Sbjct: 124 NHV-QQLKAAQQQEYLA 139 >gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 228 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 MD +L+V+ +R + F V EA + E E K P+ +V+D + G Sbjct: 1 MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PDVVVLDIMLPGVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ ++ + L + ++G GA+ +++KPFN L ++ + Sbjct: 60 GLEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117 Query: 119 QMQKSKDE 126 + + E Sbjct: 118 RRVNAVKE 125 >gi|329962433|ref|ZP_08300433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328529989|gb|EGF56877.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1481 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R + +F F V EA + E K P+ +V D M G+ Sbjct: 1209 SILIVEDNQELRFFLKTIFIQH-FNVIEAENGKSGLEK-SKNCQPDIIVSDVMMPGMDGI 1266 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + L + + E I G + GA+ ++ KPF+ L+ + L + Sbjct: 1267 EMVRALREDITTSHIPIVLLTAKSNTESKIEGMKQGADDYITKPFSAAYLKARIFNLLEQ 1326 Query: 121 QKSKD 125 +K Sbjct: 1327 RKKLQ 1331 >gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 230 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 11/137 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + GF V A + E + +++D + GV Sbjct: 3 KRILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKK-GLEGEFDLIILDLMLPGVDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 62 FEICRQIRSQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 118 Query: 120 MQKSK-----DENQFLD 131 + ++N+ ++ Sbjct: 119 RYERLIGSNVEQNEVIE 135 >gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8] gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8] gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000] Length = 229 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 2/133 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + ++ ++ G+ V +A EA + L++D M + Sbjct: 1 MK-ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + L + I G AGA+ ++ KPFN + ++ + + Sbjct: 60 GM-EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118 Query: 121 QKSKDENQFLDAI 133 + + + D + Sbjct: 119 SRMQLTKEEPDEL 131 >gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] Length = 245 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ F A A +E P+ +++D + G Sbjct: 5 KKILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLF-QEYQPDLILLDIMLPGKDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ + V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YDVCREIRK---TSKVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293] gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293] Length = 226 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59 M +L+V+ I+R+ H F+ G+ V A + E+E + +++D + + Sbjct: 1 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L D + + G GA+ ++ KPF L + L Sbjct: 61 DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117 Query: 118 PQMQKSKDENQ 128 + + + Q Sbjct: 118 FKDTNQQVQYQ 128 >gi|148656813|ref|YP_001277018.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1] gi|148568923|gb|ABQ91068.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1] Length = 969 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD VR++ + L ++ G+ V AT+ EA + E + P+ +++D ++ GV Sbjct: 7 ILVVDDDASVRRMLQILLSNAGYRVSLATTGEEALAYLEL-VTPDLVLLDVALPGVSGRQ 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ P + V + D E +A AGA+ FL+KP + L +R + ++Q Sbjct: 66 VMERIKSDPDRPFIPVILVTGHSDPEAKVAALDAGADDFLVKPVDLAELLARVRAMLRLQ 125 Query: 122 KSKDENQ 128 +S+ + Sbjct: 126 RSQRSLR 132 >gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis RP62A] gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144] gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis M23864:W2(grey)] gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis RP62A] gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144] gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis M23864:W2(grey)] gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus epidermidis FRI909] gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU144] gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU045] gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU028] Length = 236 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA + E E P +V+D + Sbjct: 3 QKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETE-QPELIVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQ 128 + +E + Sbjct: 120 RSQFVNEIE 128 >gi|73748021|ref|YP_307260.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73659737|emb|CAI82344.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] Length = 233 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD I+ K + F G++V A + EA + +P+ +V+D M Sbjct: 1 MRKNNILIVDDDPIIIKFVKANFVADGWLVTTANNGQEALRILNQN-IPDIIVLDVLMPV 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ + + + L + I + GA+ +L KPF+ + L + + Sbjct: 60 MDGMETCIQIRKQ-SSIPIIMLSAKGSSFDKIQCLKLGADDYLTKPFDIDELTARVESVL 118 Query: 119 QMQKSKD 125 + +K+ Sbjct: 119 RRAGNKN 125 >gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] Length = 1609 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + ++V ++ N + + + S EA + + + + +++D M + E Sbjct: 1200 ILIVDDEVVNQQVLKNFLNKAIYRITQVLSGEEALQVLDDDDTIDLVLLDVMMPRMSGYE 1259 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ L +++ V + + ++ G GAN ++ KPF+++ + + Sbjct: 1260 VCQKIREKHLPSELPVLMITAKNQVSDLVTGLNTGANDYIAKPFSKDEFLARLNMHLSLH 1319 Query: 122 K 122 K Sbjct: 1320 K 1320 >gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 231 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLVD +R+ + + GF V A++ E E ++ P+ ++ D M + Sbjct: 5 LLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNT-PDLVISDVMMPQVDGYQ 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R P + V +L + I G +AG +++L KPF+ + L + L + + Sbjct: 64 FLKQLRDDPRFASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLLEKR 123 >gi|255034345|ref|YP_003084966.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947101|gb|ACT91801.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1324 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+V+ + +R R LF F EA + + E LP+ ++ D M + Sbjct: 1072 NTILIVEDNDQLRVFIRELFESE-FNTLEAENGLRGLQLA-NEHLPDIVLSDIMMPDMNG 1129 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +H+++ + + V L +++I G +GA+ +L+KPF+ L +R L + Sbjct: 1130 LQLCSHLKKNITTSHIPVVLLTARAQNQQIIEGLASGADDYLVKPFDPRILELKVRNLIR 1189 Query: 120 MQ 121 ++ Sbjct: 1190 LR 1191 >gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 252 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 3/116 (2%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IA 64 V+ V +V GF V EA E +P+ +V+D + G+ Sbjct: 2 VEDDPTVNEVVCRYLKASGFQVETVADGLEAV-RVATERMPDLVVLDRMLPGLDGLEVCR 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V V L E + G AGA+ +L KPF+ L +R + + Sbjct: 61 RIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 116 >gi|167753811|ref|ZP_02425938.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216] gi|167658436|gb|EDS02566.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216] Length = 225 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V A S +A + L++D M + F Sbjct: 5 KILVVDDEESLCEILKFNLELEGYEVDVAYSAEQALAM--HPERYSLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P V + + + + +AG GA+ ++ KPF+ + +R + + Sbjct: 63 KMARMLKSSPETAAVPIIFCTAKDTEDDTVAGLNLGADDYISKPFSMREVTARVRSVLRR 122 Query: 121 QKSKDENQFL 130 +++ E + + Sbjct: 123 SQARQEEEAI 132 >gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes] Length = 237 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L++D + + + N GF V+ A EA E E E+ P+ +++D + G Sbjct: 4 KKILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119 Query: 120 MQ 121 Sbjct: 120 RH 121 >gi|296506631|ref|YP_003667865.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296327218|gb|ADH10145.1| Two-component response regulator [Bacillus thuringiensis BMB171] Length = 226 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59 M +L+V+ I+R+ H F+ G+ V A + E+E + +++D + + Sbjct: 1 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L D + + G GA+ ++ KPF L + L Sbjct: 61 DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117 Query: 118 PQMQKSKDENQ 128 + + + Q Sbjct: 118 FKDTNQQVQYQ 128 >gi|288925297|ref|ZP_06419232.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] gi|288338062|gb|EFC76413.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] Length = 1340 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + F G+ V A + E E KE + +V D M + Sbjct: 1096 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERL-KEHTVSLIVSDWMMPVMDGA 1153 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F VR + + + L + D + G GA++++ KPF+ + L +R + M Sbjct: 1154 EFCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNMLDM 1213 Query: 121 QKSKDE 126 ++ + Sbjct: 1214 RRLLMQ 1219 >gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273] Length = 225 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + +I G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + + Q Sbjct: 117 RRTNQRTQIQ 126 >gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603] gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603] gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ + GF+ T A E+E +++V+D + + Sbjct: 3 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPY-DFIVLDIMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G+ + + + D + GA+ ++ KPF+ L ++ + + Sbjct: 62 IEVCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 121 Query: 122 KSK 124 +++ Sbjct: 122 EAE 124 >gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] Length = 226 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + G+ V EA EA + N LV+D M + + Sbjct: 5 KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSIKGINLLVLDVMMPKMDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+++ + V + L + + + G G + ++ KPF+ + L + + + Sbjct: 65 -EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRT- 122 Query: 123 SKDENQFLDA 132 + E + ++A Sbjct: 123 VQTEGEQIEA 132 >gi|160890899|ref|ZP_02071902.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492] gi|156859898|gb|EDO53329.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492] Length = 658 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + + ++ L + V A + EA + E + +V D M + Sbjct: 406 TILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNED-IDLIVSDVMMPVMDGI 463 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F V+ + + V L + E GA++F+ KPFN L +R L + Sbjct: 464 EFCRCVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLLKY 523 Query: 121 QKSKDEN 127 ++ K + Sbjct: 524 KERKAHD 530 >gi|71905989|ref|YP_283576.1| PAS [Dechloromonas aromatica RCB] gi|71845610|gb|AAZ45106.1| PAS protein [Dechloromonas aromatica RCB] Length = 513 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 8/139 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD + + + G V A + EA E + P+ +++D M + Sbjct: 8 MK-VLAVDDNRTNLHILQVFLKKLGHEVVLAENGEEAVRRFETD-APDLVLLDIMMPVMD 65 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ M V +L E ++ G AGA+ +L KP N L +R + Sbjct: 66 GFEAARRIKAMTRDRWTPVIFLSALNRDENLVEGLDAGADDYLTKPINFVVLEAKLRSMQ 125 Query: 119 Q----MQKSKDENQFLDAI 133 + Q+S D + + AI Sbjct: 126 RSLTMQQQSIDSLRRVQAI 144 >gi|86136783|ref|ZP_01055361.1| response regulator [Roseobacter sp. MED193] gi|85826107|gb|EAQ46304.1| response regulator [Roseobacter sp. MED193] Length = 410 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD S + R++ +GF V EA S A E C K+ P+ ++ D M G+ L Sbjct: 7 RVLVVDDSRLQRRILVASLQKWGFDVVEAESGEAAMEICRKDP-PDLILSDWMMPGMNGL 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---REL 117 EF R+ + L + + ++ G AGA+ FL KP + + LR + + Sbjct: 66 EFCQAFREQSRDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 125 Query: 118 PQMQKSKDENQFL 130 +MQ+ E + Sbjct: 126 LKMQRELSEKNRI 138 >gi|240143855|ref|ZP_04742456.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] gi|257204143|gb|EEV02428.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] Length = 195 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ R + V EA A + +E +++D M + Sbjct: 5 KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEAALDIFYQEKNIALIILDVMMPKMNGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + D E + G G + ++ KPF+ + L + + + Sbjct: 65 EVCREIRE---TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRR 121 Query: 121 Q-KSKDENQFLD 131 K+ +E + L Sbjct: 122 SGKAPEEGKLLS 133 >gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 229 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V A+ E + L++D + L Sbjct: 2 RILLVDDEEALTAPLHRMLRREGYDVDVASDGQTG-EQLATHQPYDLLILDWMLPERSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VRQ V V +L + + G AGA+ +L+KPF + L +R L + Sbjct: 61 DLCRSVRQRD--RQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRR 118 Query: 121 QKSKDENQ 128 ++ ++ Sbjct: 119 SPRQETSE 126 >gi|75908369|ref|YP_322665.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702094|gb|ABA21770.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 443 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + ++ GF V A +A E + +P+ +++D M + F Sbjct: 11 ILVVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQS-RVPDLILLDVMMPVMDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ P D+ V ++ D + GA ++ KPF++ + + Q++ Sbjct: 70 TCKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISAHLQLR 129 Query: 122 KSKDENQ 128 + Sbjct: 130 SLNKNLE 136 >gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 247 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D +R++ + G+ V A + EA + P+ +V+D M Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQF-HNCEPDLVVLDVMMPKLDGYG 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 70 VIQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRV 126 Query: 122 KSKD 125 + + Sbjct: 127 EKEQ 130 >gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 230 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 4/131 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + + + G+ + + +A + E + +++D + + F Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNEN-FDMVLLDVMLPKMDGFT 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM--Q 121 +++ ++V + + + D + G GA+ ++ KPF L +R + Q Sbjct: 65 VC-KKVREFSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQ 123 Query: 122 KSKDENQFLDA 132 +S + + L A Sbjct: 124 QSNSDGKVLKA 134 >gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 236 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + + G+ + +A A E C E LP+ +++D + + Sbjct: 5 KILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICY-ESLPDLIILDLMLPIMDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P+ D+ + L D +I G GA+ ++ KPF+ L ++ + + Sbjct: 64 EVCRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRR 123 >gi|156740320|ref|YP_001430449.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] gi|156231648|gb|ABU56431.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] Length = 331 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + +R+ G++ A + EA E LP+ +++D +M Sbjct: 4 KILVADDNPAMREAIVRFVEAEGYVALAARNGREALNLALAE-LPDLVLLDVTMPDYDGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + V L + E G AGA+ FL KPF+ LR ++ + Sbjct: 63 EVCRRLKADPRTALIPVTMLTVLDAPEHRWRGIEAGADDFLTKPFDERLLRARIQSQLRT 122 Query: 121 QKSKDENQFLDAI 133 ++ D+ + +++ Sbjct: 123 KRLTDQLERTESV 135 >gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea psychrophila LSv54] gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family) [Desulfotalea psychrophila LSv54] Length = 242 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 7/131 (5%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+V+ ++++ + GF V A S EA +E + +++D + G Sbjct: 1 MAKLHILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLARE-AFDCILLDIMLPG 59 Query: 59 --VLEFIAHVRQMPLGTDV--FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 LE +RQ D + + + + E +I G GA+ ++ KPF+ + L + Sbjct: 60 ISGLEVCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARV 119 Query: 115 RELPQMQKSKD 125 + + + + + Sbjct: 120 KAVVRRGQKAE 130 >gi|330998135|ref|ZP_08321963.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569224|gb|EGG51015.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 865 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 4/124 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+ + + R + L F V A E +E P+ ++ D M + Sbjct: 610 TVLVAEDNEQFRTFMKDLLRQE-FTVLTAADGQEGLAMA-REYGPDLIISDVMMPHMDGY 667 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F V+ + + L + E AGA+SF+ KPF+ + L +R+L + Sbjct: 668 AFCRAVKDDVQCCHIPLILLTAKNSSESRSGAYEAGADSFIAKPFDIDVLHSRIRQLLEQ 727 Query: 121 QKSK 124 ++ + Sbjct: 728 RERR 731 >gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 223 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+VD +R++ + GF VF A + C KE P+ +++D M G+ Sbjct: 1 MDKILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISIC-KEEKPDLVILDVMMPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +V + +L + IAG AGA+ ++ KP L + L Sbjct: 60 GIEVCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALL 119 Query: 119 QMQKS 123 + ++S Sbjct: 120 RRKES 124 >gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] Length = 1381 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + +R+ L G V A + P+ +V D M + Sbjct: 631 RVLVADDNADMREYLTRLLRSAGHEVQAVADGRAALDAARAHT-PDLVVSDVMMPRLDGL 689 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R V L E I G AGA+ +L+KPF L +R ++ Sbjct: 690 QLVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRANVEL 749 Query: 121 QKSKDENQF 129 + ++ + Sbjct: 750 ARLRNHHAR 758 >gi|170723373|ref|YP_001751061.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169761376|gb|ACA74692.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 241 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+ D +R++ + + GF V + + + +++D + Sbjct: 6 KSILMADDDQEIRELLQTYLSRAGFQVHAEADG-QGFRHALENTHCDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P + V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWVRQHPRQSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAE 127 >gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis AF2122/97] gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T92] gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T17] gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis CPHL_A] gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis T46] gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG] gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA + P+ LV+D M + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMI-ASDRPDALVLDVMMPRLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L MR L + K Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 123 SKDENQFLD 131 +D + + Sbjct: 123 PEDAAESMA 131 >gi|317486008|ref|ZP_07944863.1| sigma-54 interaction domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922781|gb|EFV44012.1| sigma-54 interaction domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 467 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 1/133 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D +R R + D G+ V EA + E E + E P+ + +D + G+ Sbjct: 1 MARILIIDDEEPIRFSLRGILEDEGYEVLEAATAEEGLEVADAE-RPDLVFLDIWLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R D+ V + E ++ + GA F+ KP + E + + Sbjct: 60 GLTAQARLKGNHPDLPVVMISGHGTIETAVSAIQQGAYDFIEKPLSLEKVVIVAARALEA 119 Query: 121 QKSKDENQFLDAI 133 + ENQ L + Sbjct: 120 GSLRRENQVLRTV 132 >gi|315919295|ref|ZP_07915535.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693170|gb|EFS30005.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1347 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + + + R + + + V A + EA E KE + +V D M + Sbjct: 1096 RLLLVEDNEELLYLMRRILSKH-YYVLTAKNGIEALE-VMKEYEADIIVSDVMMPEMDGL 1153 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + L + E I AGAN+++ KPF + L + Sbjct: 1154 ELCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAE 1213 Query: 121 QKSKDENQFLDA 132 +KSK E DA Sbjct: 1214 KKSKQEEFRSDA 1225 >gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ VF A + EA ++ LP+ +++D M + Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRS-LPDLIILDIMMPKMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R MP + F+ +L + IAG GA+ ++ KP L + + + Sbjct: 65 IEACRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILR 124 Query: 120 MQKSKDEN 127 +E Sbjct: 125 RNSPSEEL 132 >gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 MD +L+V+ +R + F V EA + E E K P+ +V+D + G Sbjct: 1 MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PDVVVLDIMLPGVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ ++ + L + ++G GA+ +++KPFN L ++ + Sbjct: 60 GLEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117 Query: 119 QMQKSKDE 126 + + E Sbjct: 118 RRVNAVKE 125 >gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 243 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + +V D + V + + E+ + L++D + GV Sbjct: 5 KRILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 ++ + +A Sbjct: 124 EALSRDTRSEA 134 >gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+ D + + + G+ ++ E E + + L++D M + Sbjct: 1 MNRVLVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEY-DLLILDVMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R++ + + V L + D + G GA+ +++KPF+ L ++ + Sbjct: 60 GF-ETLRELRKFSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRR 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10] gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10] Length = 1104 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + +V + + G+ A+S E +F E + +++D M G Sbjct: 694 RILIADDEPVNLQVLTNQLSLEGYETHLASSGEEVLDFIAAES-FDLIILDLMMPGISGY 752 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ D+ + L + + + AGAN +L+KP R L +R L ++ Sbjct: 753 EVCVSLREDFSLVDLPILMLTAKSGLDDKVIAFEAGANDYLVKPCERLELTSRVRTLIRI 812 Query: 121 QKSKDENQFLD 131 +K +E + L+ Sbjct: 813 KKMNEELKALN 823 >gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 223 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ + G+ A EA + + +++D M + Sbjct: 1 MAKILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNN-IDLMILDIMMPYLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R T++ + L + + E + G GA+ ++ KPF+ + L + L + Sbjct: 60 GFSVC-RVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118 >gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 265 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + E E P+ +++D + Sbjct: 30 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVE-EYDPDLMILDLMLPKKDG 88 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 89 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 147 Query: 122 KSKDENQ 128 + + Sbjct: 148 DIVKKAE 154 >gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + + + E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRGEPEE 124 >gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + +FG V A + + + + E + LV+D M + Sbjct: 1 MAKILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEP-FDLLVLDIIMPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 RQ+ D V L + ++ G AGA+ +L+KPF+ + L + L Sbjct: 60 GLDLCRQYRQLYGY-DSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALL 118 Query: 119 QMQKSKDENQF 129 + K K ++ Sbjct: 119 RRSKEKRTSEL 129 >gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU121] Length = 241 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R++ + F EA+ EA + + +++D + + Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDY-ACILLDLMLPEM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 Q+ D + L + + + G +GA+ +++KPF+ + ++ L + Sbjct: 60 DGIEVAT-QLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118 Query: 120 MQKSKDENQ 128 +S Q Sbjct: 119 RTQSTTPEQ 127 >gi|330997764|ref|ZP_08321599.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569652|gb|EGG51417.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1320 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R F D G+ V A + E ++ L+P+ +V D M + Sbjct: 1070 VLVVEDNDDIRDYVASSF-DEGYRVVTAMNGREGWREAQR-LVPDIIVSDIMMPEMDGIG 1127 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V++ + + V L + G +GA+S+L KPF+ L +R L M+ Sbjct: 1128 LCRRVKEDVRTSHIPVILLTAKDSIRDKEEGYDSGADSYLTKPFSATLLNSRVRNLLDMR 1187 Query: 122 KSKDEN 127 + Sbjct: 1188 RKLARM 1193 >gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 222 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + R G V EA EA + + + + +++D M + Sbjct: 1 MYRILMVDDEEKIRAIVRKYAEFEGNEVVEAADGMEAVKLAKSQD-FDIIILDIMMPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D V L + I G G + +++KPF+ + L + + Sbjct: 60 GFSACKEIRK---YKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAIL 116 Query: 119 QMQKSKDENQ 128 + + EN+ Sbjct: 117 KRRGGAQENK 126 >gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1] gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + + Q Sbjct: 117 RRTNQRTQIQ 126 >gi|253991781|ref|YP_003043137.1| DNA-binding transcriptional regulator CpxR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638556|emb|CAR67177.1| transcriptional two-component response regulatory protein cpxr [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783231|emb|CAQ86396.1| transcriptional two-component response regulatory protein cpxr [Photorhabdus asymbiotica] Length = 231 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L G V A +A + ++ + L++D M Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGLNVVIAHDGEQALKLLDES--IDLLLLDIMMPRKN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 IA ++++ L V L + G GA+ +L KPFN L +R + + Sbjct: 59 G-IATLKELRLHHQTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SNWSEQQQ 125 >gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator PHOP [Mycobacterium tuberculosis H37Rv] gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator PHOP [Mycobacterium bovis AF2122/97] gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 94_M4241A] gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T92] gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T17] gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis 210] gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN R506] gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN V2475] gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium tuberculosis H37Rv] gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium bovis AF2122/97] gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CDC1551A] gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis W-148] gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] Length = 247 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V+ AT+ +A + +E P+ +++D M G+ F Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 81 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138 >gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] Length = 236 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|322419913|ref|YP_004199136.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] gi|320126300|gb|ADW13860.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] Length = 311 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+ + R + + + +G+ V A EA + + E P +++D M G Sbjct: 1 MK-ILIAEDEPQFRDLLKEILEKWGYEVVVARDGNEAWQVLQSEDAPRLVILDWMMPGLK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ VR+ V++ L + + ++AG AGA+ +++KPF LR +R Sbjct: 60 GIDICRKVREGSQDPYVYIILLTAQRQDDDLVAGMEAGADDYIIKPFKSNELRVRLRA-- 117 Query: 119 QMQKSKDENQFLDA 132 + + +N+ L A Sbjct: 118 GRRIIELQNELLAA 131 >gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 227 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ GF A E + P +++D + G+ F Sbjct: 5 SILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNP-PAAVILDLMLPGLDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + L + I G GA+ +++KPF+ L +R + + Sbjct: 64 EVCKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSVLKR 123 Query: 121 QKSKDENQFLDA 132 + E + + A Sbjct: 124 HAPEPEKRQVLA 135 >gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLE-EKEFDLIILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119 >gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 249 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D + ++ G+ V +A + + +L+P+ +++D + V Sbjct: 1 MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKG-QALAVQLVPDLIMLDLMLPRV 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R+ ++ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 DGFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRAL 119 Query: 118 PQM 120 Q Sbjct: 120 LQR 122 >gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium) chloroplast gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium] gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R++ + G+ V A A KE PN +V+D M Sbjct: 9 KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEH-PNLVVLDVMMPKIDGY 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D I G GA+ +++KPF+ + L +R + + Sbjct: 68 GVCQEIRKE---SDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124 >gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter sp. TrichCH4B] gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter sp. TrichCH4B] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V + GF V +A + EA +E +P+ +V+D M + Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEAL-LLVEEDMPDIIVLDWMMPNLTGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + L + + G GA+ +++KP++ L +R + Sbjct: 66 EICRRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 VRPATVGMRLE 136 >gi|229077964|ref|ZP_04210573.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228705302|gb|EEL57679.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] Length = 240 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V+ AT+ +A + +E P+ +++D M G+ F Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 74 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 >gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU144] gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU045] gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU028] Length = 241 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R++ + F + EA EA E + +++D + + Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNY-ACILLDLMLPEM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + D + L + + + G +GA+ +++KPF+ + ++ L + Sbjct: 60 DGIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118 Query: 120 MQKSKDENQ 128 ++ + Q Sbjct: 119 RTQTANTEQ 127 >gi|309790461|ref|ZP_07685022.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227509|gb|EFO81176.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + +R++ R G+ V +A + E + P+ +++D M + Sbjct: 4 RTILVVDDDNGLRELIRINLEHEGYTVIQAADGLQCLELVRDQ-RPDLVILDVMMPEMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + + + V L +V E +I G GA+ +LLKPFN L +R L + Sbjct: 63 VEACTKLRE-FSLLPVLMLTAKVQSEDVIQGLDCGADDYLLKPFNMNELSARIRALLRR 120 >gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + +V L GF F A + A E E E + +++D M + Sbjct: 6 KNVLVVDDEPKILEVVCLLLESKGFRTFPAENGQRALEIFESEN-ISLIILDLMMPDISG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L +VD ++ G GA+ +++KPF + L + + + Sbjct: 65 EEVCRAIRKKSR---VPIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLR 121 Query: 120 MQKS 123 +S Sbjct: 122 RTES 125 >gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A S A + + E P+ ++D M G+ Sbjct: 9 TKVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVD-EYQPDAFILDVMMPGMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + G D V +L + E I G GA+ ++ KPF+ E + +R + + Sbjct: 68 FSLLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRV 127 Query: 122 KSKDENQ 128 +DE + Sbjct: 128 SPEDEKE 134 >gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 237 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLVD ++ + + G+ V +AT EA E E + +V+D + Sbjct: 6 TRILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFE-ERPFDLVVLDVMLPQLDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R V + L + + + G GA+ ++ KPF+ R ++ + Sbjct: 65 LEVCRRLRSRSS---VPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALR 121 Query: 120 MQKSKDENQF 129 + + Sbjct: 122 RSELSRSAER 131 >gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] Length = 246 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF V A EA + + + V+D + + F Sbjct: 10 TVLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDH-QAGAHLDLAVLDVMLPDMDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++ V +L D + I G G + ++ KPF+ E + +R + + Sbjct: 69 TILRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTH 128 Query: 123 SKDEN 127 D + Sbjct: 129 PSDAD 133 >gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS] gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ G+M S EA ++ P+ +++D + + Sbjct: 7 SILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQR-FRPDVVLLDWMLPDLSGM 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +R+ + V L + E +AG GA+ ++ KPF+ + L + L + Sbjct: 66 RLLSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR 125 Query: 121 QKSKDENQFLDA 132 + + L A Sbjct: 126 KAPERAKSLLRA 137 >gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 238 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ F EA +E PN +++D + G Sbjct: 5 QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQY-REYQPNLILLDLMLPGIDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E VR+ + + + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YEVCREVRK---TSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|265752180|ref|ZP_06087973.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236972|gb|EEZ22442.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1441 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + +R + + + EA + + E E LP+ ++ D M + Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLE-LPDLVLSDVMMPCMDGI 1232 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V++ + + L + + I G GA+ ++ KPF+ LR + L + Sbjct: 1233 ELLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLLKQ 1292 Query: 121 QKS 123 ++ Sbjct: 1293 REM 1295 >gi|212691822|ref|ZP_03299950.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855] gi|237708028|ref|ZP_04538509.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|237724821|ref|ZP_04555302.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|265756177|ref|ZP_06090506.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|212665578|gb|EEB26150.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855] gi|229437016|gb|EEO47093.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] gi|229457856|gb|EEO63577.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|263233768|gb|EEZ19377.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1329 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 25/155 (16%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R+ H ++ + V T+ EA + E P+ ++ D M + Sbjct: 1071 QRILVVEDNDDLREYLFHTLSEA-YQVETCTNGKEALKIIP-EFKPDLVLSDIMMPEMRG 1128 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM----- 114 E + ++ L + + V L D + ++ G GA+ +L+KPFN L+ ++ Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188 Query: 115 -RELPQMQKSKDE---------------NQFLDAI 133 R L + + + E QFL+A+ Sbjct: 1189 NRALLRRKYADMELHNDSISINYSNTLDQQFLEAV 1223 >gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ + G+++ EA A +++D + G+ Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDY-ALILLDVMLPGIDGV 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ+ V L + + + G GA+ +++KPF+ + + ++ + + Sbjct: 66 EVCSRLRQV---KATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRR 122 Query: 121 QKSKD 125 + Sbjct: 123 SSATA 127 >gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ H GF V EA+ EA + + +++D M + Sbjct: 1 MACILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKA-DLVIMDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R D+ L + + + + G GA+ +L+KPF L ++ L Sbjct: 60 GWELCAEIR---DHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALL 116 Query: 119 QMQKSKDEN 127 + + Sbjct: 117 KRYRIASSQ 125 >gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA [Mycobacterium avium 104] gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA [Mycobacterium avium subsp. avium ATCC 25291] gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA + P+ LV+D M + Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMI-ASDRPDALVLDVMMPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L MR L + K Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 123 SKDENQ 128 +D+ + Sbjct: 121 PEDDAE 126 >gi|320160702|ref|YP_004173926.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994555|dbj|BAJ63326.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 381 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ + A++ +A E P+ +++D M V F Sbjct: 4 KILIVDDDVQTLRLVGLMLERQGYKILAASNGTQAISMARTE-RPDLILLDVMMPDVDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ P D+ + + E IAG AGA+ +L KP + L MR + Sbjct: 63 SVARTLRKEPETADIPILMFTAKAQVEDKIAGYEAGADDYLTKPIHPAELTAHMRAILSR 122 Query: 121 QKSK 124 K + Sbjct: 123 NKGR 126 >gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + + GF V EA++ EA + ++ +++D M + Sbjct: 13 KILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDLFFEQKDIALIILDVMMPKMDGW 72 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + + G G + ++ KPF+ + L + + + Sbjct: 73 ETCRTIRK---YSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRR 129 Query: 121 QKS 123 + Sbjct: 130 SNA 132 >gi|261212267|ref|ZP_05926553.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. RC341] gi|260838875|gb|EEX65526.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. RC341] Length = 1112 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V E E ++E P L++D M G+ Sbjct: 707 LLVADDEPVNLRVLDSFLRLEGYRVHTVQDGHEVLEAVKREK-PELLLLDIMMPGMSGYQ 765 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + Sbjct: 766 VCEKLRQSYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 823 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 824 ASKAELRRVE 833 >gi|237799640|ref|ZP_04588101.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022495|gb|EGI02552.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 140 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD +R++ G+ EA + +A + P+ +++D + G Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ L D+ + L + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 217 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ +RKV R G++V EA E + E P+ +++D M Sbjct: 1 MK-ILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFY-EWNPDLVLLDVMMPKKD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ V L + E I G GA+ ++ KPF+ + L ++ L Sbjct: 59 GYEVCRAIKSE---KTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRLKNLL 115 >gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|94500875|ref|ZP_01307401.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65] gi|94426994|gb|EAT11976.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65] Length = 294 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + D + V EAT+ +A + + + +++D M + Sbjct: 1 MTHILIVDDVASNLVLLGSHLEDQDYSVIEATNGPQALDLLQSHDDIDLVLLDVEMPKMS 60 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + ++Q D+ V + D + ++ G GA +++KP++ L +R Sbjct: 61 GLEVLRKIKQDEQIKDLPVILVTANGDDQNVVDGLDLGAVDYVIKPYSLSVLLARVRSAL 120 Query: 119 QMQKSKDENQ 128 + ++ D + Sbjct: 121 REKERLDLME 130 >gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in phosphate regulation) [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + + R+ F V AT +A ++ +++++D + + Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQK-FDFIILDLMLPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + L + + I G GA+ ++ KPF+ + +R + + Sbjct: 60 GIAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERR 119 >gi|329957721|ref|ZP_08298196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522598|gb|EGF49707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1348 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +R+ + + EA + EA KE + ++ D M + Sbjct: 1102 KILIVEDNFDIRRYLSDELGKS-YHISEAGNGEEALALM-KEQEADLILTDVMMPVMDGL 1159 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + L + D ++ + G + GA+ ++ KPF+ + +R L + Sbjct: 1160 QLCKQIKQNLRTCHIPIIILSAKADLKEQLEGLQVGADDYIPKPFSMAVITTKIRNLFRT 1219 Query: 121 Q 121 + Sbjct: 1220 R 1220 >gi|265755299|ref|ZP_06090069.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263234441|gb|EEZ20031.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1344 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ R F D + V A E E + +PN +V D M + Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQV-RIPNIIVSDIMMPVMDGIE 1151 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 Query: 122 K 122 K Sbjct: 1212 K 1212 >gi|237724088|ref|ZP_04554569.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229437548|gb|EEO47625.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1344 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ R F D + V A E E + +PN +V D M + Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQV-RIPNIIVSDIMMPVMDGIE 1151 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 Query: 122 K 122 K Sbjct: 1212 K 1212 >gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08] gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07] gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08] gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07] Length = 223 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ + G+ A EA + + +++D M + Sbjct: 1 MAKILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNN-IDLMILDVMMPYLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R T++ + L + + E + G GA+ ++ KPF+ + L + L + Sbjct: 60 GFSVC-RVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118 >gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 258 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK + P+ +V+D + + F Sbjct: 23 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 81 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D + I G G + ++ KPF+ E + +R + + + Sbjct: 82 TVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 141 Query: 123 SKDEN 127 + E+ Sbjct: 142 EQVED 146 >gi|262401680|ref|ZP_06078246.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. RC586] gi|262352097|gb|EEZ01227.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. RC586] Length = 1112 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+ D + +V G+ V E E ++E P L++D M G+ Sbjct: 707 LLVADDEPVNLRVLDSFLRLEGYRVHTVQDGNEVLEAVKREK-PELLLLDIMMPGMSGYQ 765 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ ++ + L + + G AGAN +L KPFN++ L + + + Sbjct: 766 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARI--IAHLT 823 Query: 122 KSKDENQFLD 131 SK E + ++ Sbjct: 824 ASKAELRRIE 833 >gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family [Leptospirillum ferrodiazotrophum] Length = 232 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + H GF + + L P+ +++D + G+ Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARR-LKPDAILLDLMLPGIDG 61 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++Q P + V + + + + G GA+ +++KPF+ + + ++ + + Sbjct: 62 LTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLR 121 Query: 120 MQKSKDEN 127 ++++ Sbjct: 122 RRETQQRL 129 >gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++VD +RK+ R G+ V EA EA + ++ +++D + + Sbjct: 11 QKIMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVMLPKLSG 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ + V + L + D + + G G + ++ KPF+ +TL ++ + + Sbjct: 71 FDVA-REIRETSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRRS 129 Query: 122 KSKDENQFLDA 132 +++ + L+A Sbjct: 130 GVEEQAKLLEA 140 >gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 SNQASE 125 >gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8] gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD + +V GF V EA +A E + +++D + G L Sbjct: 2 KVLLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALELF---PQADLVILDLMLPKVGGL 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ ++ + L + + E + G GA+ +++KPF+ + ++ L + Sbjct: 59 EVARLIRQ--ERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRR 116 Query: 121 QKSKDEN 127 ++E Sbjct: 117 AGLREEL 123 >gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R+ G+ V EA +E +P+ +++D + G +E Sbjct: 5 ILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRL-RESVPDLVILDWMLPGLSGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P + V L + + + G GA+ +++KPF+ L +R L + Sbjct: 64 LCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRRA 123 Query: 122 KSKDENQFLDA 132 K + L A Sbjct: 124 KPEHVATLLRA 134 >gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 236 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 52/121 (42%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+V+ + + ++ GF V A + ++ P+ +++D + Sbjct: 3 KTVLVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQS-PDLILLDLMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R++ + ++ + L D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 VEVCKELRRLRI--NIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|224535953|ref|ZP_03676492.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM 14838] gi|224522441|gb|EEF91546.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM 14838] Length = 1403 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 SLL+V+ + + ++ L +MV+ A + EA + E+E + +V D M + Sbjct: 1142 SLLIVEDNEELLQLMTKLL-GADYMVYTANNGKEAIDVVEQEE-IDLIVSDVMMPEMDGI 1199 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +++ + + V L + E + +GA+ F+ KPFN L + L + Sbjct: 1200 EFCQYIKNKFETSHIPVVLLTAKNKEEDRVEAYESGADGFISKPFNLSVLHARISNLLRS 1259 Query: 121 QK 122 ++ Sbjct: 1260 RE 1261 >gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 245 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ G+ S EA E ++ LP+ +++D + G Sbjct: 1 MGRILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAV-RDALPDLVILDWMLPGES 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R ++ + L + M+ G AGA+ +L KPF+ L +R + Sbjct: 60 GVSLARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVL 119 Query: 119 QMQ 121 + + Sbjct: 120 RRK 122 >gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni ACN14a] gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR, regulation of Pi uptake (OmpR family) [Frankia alni ACN14a] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+V+ + GF V A ++ + +++D + G Sbjct: 1 MTRLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGA-DLVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R V + L + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRTLRTRSS---VPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRSETEE 124 >gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+V+ + GF V A ++ + +++D + G Sbjct: 1 MTRLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGA-DLVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + V + L + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRTLRTR---STVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRSENEE 124 >gi|17228581|ref|NP_485129.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130432|dbj|BAB73043.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 378 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D ++ + + + G+ + A++ E P ++ D M G Sbjct: 1 MFQILIIDDDLSIQILLKRILQKQGYQIVTASNGEEGITQALTS-RPALIICDWIMPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ P + F L + G AGA+ F+ KP + ++ +R Sbjct: 60 GLEVCHRIKTDPNLSTTFFILLTSLDSVADRVKGLDAGADDFITKPIEQNEMQARVRAGL 119 Query: 119 QMQKSKDENQ 128 ++ + + + Sbjct: 120 RLHQLSRDLR 129 >gi|262195404|ref|YP_003266613.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262078751|gb|ACY14720.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 395 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + GF V A EA + LP+ +++D M G+ F Sbjct: 22 TVLIVDDNPENLGFLFEYLEECGFKVLVALDGEEALSYA-THALPDMILLDVMMPGIDGF 80 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ MP D V ++ D + + G ++ KP N+E + + + Sbjct: 81 DTCARLKTMPEARDTPVIFMSALSDPQDKLRAFELGGVDYVTKPINKEEVLARINAHVSL 140 Query: 121 QKSK 124 ++ + Sbjct: 141 RRLQ 144 >gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 280 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ VF A +A + +E P+ +++D + G Sbjct: 50 RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 108 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 109 MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 165 Query: 120 MQKSKDENQ 128 S+ + Sbjct: 166 RHYSQPAQE 174 >gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 684 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD ++ + + G+ V S +A + P+ +++D M + Sbjct: 13 ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDP-PDLILLDIKMPEMDGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ V +L + + G ++ KPF E + ++ ++ Sbjct: 72 VCQRLKADEKTAEIPVIFLSALDEVWDKVKAFEVGGVDYITKPFQLEEVIARVKTQLTLR 131 Query: 122 KSKDENQ 128 + + Q Sbjct: 132 HIQQQLQ 138 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + + +KV L G+ ++ E + ++ + +++D M + Sbjct: 562 RILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAISRQSY-DVILMDVQMPEMDGL 620 Query: 63 IAHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + + L E +AG + ++ KP + L + +P Q Sbjct: 621 TATRYICQNYSQRPWIIALTANAMQEDRETCLKAGMDDYISKPIRQADLIRVFKMIPLRQ 680 Score = 77.9 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 38/122 (31%), Gaps = 2/122 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + ++ +G + S EA + ++ + +ID M + Sbjct: 416 KRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEALAWLNQKEAFDVAIIDRQMPEMNG 475 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + L + + L KP L + ++ Sbjct: 476 LTLGLQIHNQSGFKELPLVLLTPIGKMTTKTSLIERHFAACLPKPIKLGQLYNTLTQVLG 535 Query: 120 MQ 121 Q Sbjct: 536 RQ 537 >gi|218247529|ref|YP_002372900.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|257061135|ref|YP_003139023.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|218168007|gb|ACK66744.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|256591301|gb|ACV02188.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 395 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M LL+VD + ++ + ++ G+ V +A + A ++ P+ +++D +M Sbjct: 5 MTKDKGNLLVVDDTPDNLRLLSAMLSEQGYKVRKALNGQIALNTV-SQVPPDVILLDINM 63 Query: 57 EGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 G+ E ++ D+ V ++ D + G ++ KPF E + + Sbjct: 64 AGMNGYEVCKILKSDQETQDIPVIFISALDDVLDKVKAFEVGGVDYITKPFQCEEVIARI 123 Query: 115 RELPQMQKSKDENQF 129 +Q+ + + Q Sbjct: 124 ENQLTIQRQRKQLQQ 138 >gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 237 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+ D +R++ + GF+V A EA + + P+ +++D M Sbjct: 6 QKILVADDEASIRRILETRLSMMGFVVITAADGEEALQVF-QHQEPDLIILDVMMPKLNG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +RQ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 65 YQVCQSLRQE---SDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|119488494|ref|ZP_01621667.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455305|gb|EAW36445.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 396 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ + + + V +AT+ +A + E + P+ +++D M + Sbjct: 11 ILIVDDTPENLRLLSSMLEEQSYKVRKATNGKQALKAIEAQS-PDLILLDILMPEMNGYQ 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118 H++ + D+ + +L D + G ++ KPF + + +R Sbjct: 70 IAKHLKSLDSTRDIPIIFLSALNDTMDKVFAFDVGGVDYITKPFQVQEVLVRVRTQITLR 129 Query: 119 -QMQKSKDENQFLD 131 Q ++ +++NQ L Sbjct: 130 NQQKQLREQNQKLQ 143 >gi|28901520|ref|NP_801175.1| putative two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260363072|ref|ZP_05775941.1| response regulator GltR [Vibrio parahaemolyticus K5030] gi|260880359|ref|ZP_05892714.1| response regulator GltR [Vibrio parahaemolyticus AN-5034] gi|260894726|ref|ZP_05903222.1| protein GltR [Vibrio parahaemolyticus Peru-466] gi|260900076|ref|ZP_05908471.1| response regulator GltR [Vibrio parahaemolyticus AQ4037] gi|28810067|dbj|BAC63008.1| putative two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308089446|gb|EFO39141.1| protein GltR [Vibrio parahaemolyticus Peru-466] gi|308091700|gb|EFO41395.1| response regulator GltR [Vibrio parahaemolyticus AN-5034] gi|308110048|gb|EFO47588.1| response regulator GltR [Vibrio parahaemolyticus AQ4037] gi|308112437|gb|EFO49977.1| response regulator GltR [Vibrio parahaemolyticus K5030] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ GF V A + + P+ +++D M G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHH-PDLIILDIMMPGDDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D+ + L + +AG GA+ ++ K F+ L ++ + + Sbjct: 63 FTLCQKLRKN---SDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119 Query: 120 MQKSKD 125 +S Sbjct: 120 RSQSTA 125 >gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + A + E P+ +++D + G+ Sbjct: 5 QRILIVDDDENIAELISLYLMKECYETKIVGDGESALADFD-EFKPHLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRAKSG---TPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIR 120 Query: 120 MQKS 123 S Sbjct: 121 RYHS 124 >gi|320156983|ref|YP_004189362.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O] gi|319932295|gb|ADV87159.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O] Length = 242 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + G+ V + + + + P +++D + G Sbjct: 5 TRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V + L + I G GA+ ++ KPFN L ++ + + Sbjct: 65 FSLCQFMRRE---STVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLR 121 Query: 120 MQKSKDE 126 E Sbjct: 122 RVHVTQE 128 >gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD V K+ + + GF T+ +A E E +++++D + + Sbjct: 3 KQVLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + + D + GA+ +L KPF+ L ++ + + Sbjct: 62 MEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121 Query: 122 KSKDE 126 K + E Sbjct: 122 KGEQE 126 >gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 249 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ VR V R G+ V A E P+ +V+D + G+ Sbjct: 12 VLVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAE-PDLIVLDIMLPGLDGLQ 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G+ V + L + + IAG +GA+ +++KPF+ + L + + + Sbjct: 71 ICERLR-REDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRR 128 >gi|295085550|emb|CBK67073.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1350 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++VD + + + ++ + V A+S EA + EK + ++ D ME + F Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNN-IDLIISDVMMEEMDGFE 1144 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V V L + D E I G AGA++++ KPF+ L+ + L + + Sbjct: 1145 LCGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1204 Query: 122 KSKDE 126 +S+ + Sbjct: 1205 ESQQK 1209 >gi|262406003|ref|ZP_06082553.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294806907|ref|ZP_06765732.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262356878|gb|EEZ05968.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294445936|gb|EFG14578.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1342 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++VD + + + ++ + V A+S EA + EK + ++ D ME + F Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNN-IDLIISDVMMEEMDGFE 1144 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V V L + D E I G AGA++++ KPF+ L+ + L + + Sbjct: 1145 LCGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1204 Query: 122 KSKDE 126 +S+ + Sbjct: 1205 ESQQK 1209 >gi|237718991|ref|ZP_04549472.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451769|gb|EEO57560.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1342 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++VD + + + ++ + V A+S EA + EK + ++ D ME + F Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNN-IDLIISDVMMEEMDGFE 1144 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V V L + D E I G AGA++++ KPF+ L+ + L + + Sbjct: 1145 LCGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1204 Query: 122 KSKDE 126 +S+ + Sbjct: 1205 ESQQK 1209 >gi|237717236|ref|ZP_04547717.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229443219|gb|EEO49010.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1337 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++VD + + + ++ + V A+S EA + EK + ++ D ME + F Sbjct: 1082 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNN-IDLIISDVMMEEMDGFE 1139 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V V L + D E I G AGA++++ KPF+ L+ + L + + Sbjct: 1140 LCGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1199 Query: 122 KSKDE 126 +S+ + Sbjct: 1200 ESQQK 1204 >gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] Length = 243 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A+S + + P+ +V+D M G+ F Sbjct: 17 RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVART-FRPDAIVLDVMMPGMDGF 75 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D V +L + + I+G GA+ ++ KPF+ E + +R + + Sbjct: 76 GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 133 >gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 269 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD V KV G+ V A EA E +E P+ +V+D + + F Sbjct: 26 TILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRES-PDLVVLDVMLPKLDGF 84 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 85 AVCRRIRGESI---VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 141 >gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum WAL-14163] gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673] gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum WAL-14163] gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673] Length = 246 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ +R+ G+ VF+A E E E+E + ++D M + Sbjct: 11 RILLVEDDKEIREGIEIFLRGQGYRVFQAADGVEGLEILEREE-IHLAIVDIMMPRMDGV 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R D V +L + + I G GA+ ++ KPF L + + Sbjct: 70 TMVIRLREHY-DFPVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRRYN 128 >gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 239 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +R+V L + G+ V EA A E + +++D M + F Sbjct: 14 RILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAVAKAE---DMDLIILDVMMPKMDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ T+ + +L + + G +G + +L KPF+ L ++ L + Sbjct: 71 -KACRQIREVTNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRR 127 >gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD ++ K + G+ V A EA + + + +++D + L Sbjct: 4 KILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKY-DVMLLDVMLPKYDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR+ +++ + L + + I G GA+ ++ KPFN L+ ++ + + Sbjct: 63 QVCQLVRE---FSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRR 119 Query: 121 QKSKDE 126 + ++ Sbjct: 120 SQHAEK 125 >gi|144898960|emb|CAM75824.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain [Magnetospirillum gryphiswaldense MSR-1] Length = 388 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + V L D + V A+S +A + P+ +++D M G Sbjct: 11 TILVVDDTPDNLAVLSSLLKDE-YRVKVASSGEKALKVAAAANPPDLILLDIMMPGLDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ V +L + D + G GA ++ KP + + +R ++ Sbjct: 70 EVCQRLKLDPATRDIPVIFLTAKSDVDSERHGLELGAVDYISKPISPPIVLARVRTHLEL 129 Query: 121 QK----SKDENQFLD 131 + +D+N+FL+ Sbjct: 130 KASSDYLRDQNEFLE 144 >gi|260170975|ref|ZP_05757387.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1361 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + + + R + + + V A + EA E KE + +V D M + Sbjct: 1110 RLLLVEDNEELLYLMRRILSKH-YYVLTAKNGIEALE-VMKEYEADIIVSDVMMPEMDGL 1167 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + L + E I AGAN+++ KPF + L + Sbjct: 1168 ELCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAE 1227 Query: 121 QKSKDENQFLDA 132 +KSK E DA Sbjct: 1228 KKSKQEEFRSDA 1239 >gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ VF A++ EA KE+ P+ +++D M + Sbjct: 6 QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQA-KEVNPDLIILDVMMPQMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R MP F+ +L + IAG GA+ ++ KP L + + + Sbjct: 65 IEACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILR 124 Query: 120 MQKSKDE 126 ++DE Sbjct: 125 RNTAEDE 131 >gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] Length = 223 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ ++++ ++ + G+ V A EA E + +V+D + Sbjct: 1 MQRILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERY-DLIVLDIMLPKID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +DV + L E I G + ++ KPF+ L + + Sbjct: 60 GYGVCELIRKQ---SDVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVL 116 Query: 119 QMQKSKDENQ 128 + + + + Sbjct: 117 RRSNRETDEK 126 >gi|119486865|ref|ZP_01620840.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC 8106] gi|119456158|gb|EAW37291.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC 8106] Length = 564 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R+ L F V A + + E +K +P+ ++ D M + Sbjct: 1 MTKVLIIEDEDSIRENIAELLEIEDFEVETAANGIQGLETAKK-TIPDLILCDVMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + +L + + + G GA+ +L KP + + L A+ Sbjct: 60 GYQVLTELRKHSETANTPFIFLTAKAERMDLRQGMNLGADDYLTKPCSSQELLEAIVARL 119 Query: 119 QM 120 Q Sbjct: 120 QR 121 >gi|300868140|ref|ZP_07112774.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300333875|emb|CBN57954.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 440 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + V L ++ F V+ A A E LP+ +++D M G+ F Sbjct: 11 VLIVDDNSNNLGVLYDLLDNASFEVWVAQDGESAIEKVGYA-LPDLILLDIMMPGIDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 ++ PL D+ V ++ + + G GA ++ KPF +E + ++ ++ Sbjct: 70 TCNRLKANPLTADIPVIFMSAMSESIDKVKGLSLGAVDYITKPFQQEEVLARVKLHLKLY 129 Query: 121 ---QKSKDENQFLD 131 +K + +NQ L+ Sbjct: 130 YLTKKIEKQNQELE 143 >gi|237726665|ref|ZP_04557146.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435191|gb|EEO45268.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1441 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + +R + + + EA + + E E LP+ ++ D M + Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLE-LPDLVLSDVMMPCMDGI 1232 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V++ + + L + + I G GA+ ++ KPF+ LR + L + Sbjct: 1233 ELLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLLKQ 1292 Query: 121 QKS 123 ++ Sbjct: 1293 REM 1295 >gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis] Length = 238 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + + V A +A E+ + +++D M + Sbjct: 5 RVLIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHY-HLVILDVMMPKIDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R T+V + L + I G GA+ ++ KPF+ + ++ + + Sbjct: 64 EVCRRMRNH---TNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120 >gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens F0305] gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens F0305] gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] Length = 245 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++VD +R++ + GF V A S EA + K P+ +V+D + + F Sbjct: 11 TIVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTD-PDLIVLDVMLPDIDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V +L D + + G G + ++ KPF+ E + +R + + + Sbjct: 70 TVTRRIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 129 Query: 123 SKDEN 127 + E+ Sbjct: 130 EQVED 134 >gi|262409757|ref|ZP_06086294.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262352374|gb|EEZ01477.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1321 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R L + ++V ++ +A +E P+ ++ D M + Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A V+ + + V L D + M+ G GA++++ KPF+ LR +R + Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186 Query: 120 MQKSKDE 126 + Sbjct: 1187 NRALLRR 1193 >gi|237717798|ref|ZP_04548279.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452897|gb|EEO58688.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1321 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R L + ++V ++ +A +E P+ ++ D M + Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A V+ + + V L D + M+ G GA++++ KPF+ LR +R + Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186 Query: 120 MQKSKDE 126 + Sbjct: 1187 NRALLKR 1193 >gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis raciborskii T3] Length = 272 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ ++R++ G+ V A A E EL + LV+D + Sbjct: 42 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G + + L + + G GA+ +L KPF+ + Sbjct: 102 PQINGLDICRLLRHQ--GNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARC 159 Query: 115 RELPQMQK 122 R L + Q+ Sbjct: 160 RALLRRQR 167 >gi|189467281|ref|ZP_03016066.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM 17393] gi|189435545|gb|EDV04530.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM 17393] Length = 1330 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R +F G+ V + EA +E P+ ++ D M + Sbjct: 1078 QRILIVEDNDDLRNYLIDMFKT-GYNVQSCPNGKEAL-VIVREFDPDLVISDIMMPEMGG 1135 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + M+ G GA++++ KPF+ L+ ++ + Sbjct: 1136 DELCSVIKGDLEISHIPVILLTALGDEKNMLEGLEIGADAYITKPFSVGILKATVKNILA 1195 Query: 120 MQKSKDE 126 + + Sbjct: 1196 NRTLLRQ 1202 >gi|209546661|ref|YP_002278579.1| two component winged helix family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537905|gb|ACI57839.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R V G + + EA + + +++D M + Sbjct: 4 RILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGK-IDLIILDIGMPDMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + +L + + G G + ++ KPF+ L ++ + + Sbjct: 63 DVCRQIRK---TSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKR 119 Query: 121 QKSKDENQFLDAI 133 ++ E + AI Sbjct: 120 SGNEAEPERRRAI 132 >gi|167580218|ref|ZP_02373092.1| DNA-binding response regulator OmpR [Burkholderia thailandensis TXDOH] gi|167618327|ref|ZP_02386958.1| DNA-binding response regulator OmpR [Burkholderia thailandensis Bt4] gi|257139875|ref|ZP_05588137.1| DNA-binding response regulator OmpR [Burkholderia thailandensis E264] Length = 241 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L + + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119 Query: 120 MQK 122 ++ Sbjct: 120 RRR 122 >gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 227 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 62/136 (45%), Gaps = 9/136 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+VD +R++ + G+ V++A + +A + + + + ++D M + Sbjct: 1 MASVLVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIID-NMSIDITILDVMMADMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +++ + L + + G AGA+ +L KPFN L ++ Sbjct: 60 GITLCMEIRKK---SNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQL 116 Query: 119 QMQK---SKDENQFLD 131 + K ++ ++ L+ Sbjct: 117 RRYKDFNNQKQSNILE 132 >gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+++ + + ++ G+ V A E + E P+ +++D + +E Sbjct: 5 ILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQID-ERTPDLILLDWMLPKLSGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR ++ + L + + G GA+ ++ KPF+ L +R + + Sbjct: 64 VCRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLRRI 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|309791478|ref|ZP_07685982.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308226475|gb|EFO80199.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 407 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + K+ G+ + AT+ A + P+ ++D M Sbjct: 7 RILIVDDTPLNLKMVSAALASGGYQIETATTGHMALDRAVT-FRPDLFILDVMMPDIDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+M + L E+ + G AGA+ ++ KPF L+ ++ L + Sbjct: 66 EVCRRLRRMTTFAQHPILMLTANDTLEERVRGLEAGADDYMSKPFQPIELQARVKALLRR 125 >gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ + +A + PN L++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECYDTKIVNDGEQAL-IAFEHYKPNMLLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L + + + G GA+ ++LKPF+ + L ++ + + Sbjct: 64 YQVCREIRAK---SDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 231 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ GF A A+ + +LP+ +++D + Sbjct: 1 MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDA-VLPDVILLDWMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L R V + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKD 125 + + + + Sbjct: 120 AVLRRRAPEQ 129 >gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei] gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei] gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ VR+ + G +V A S E + P+ +V+D + G+ Sbjct: 1 MAEVLVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRH-RPDLVVLDLMLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R G V + L D ++AG AGA+ ++ KP L +R + + Sbjct: 60 GFETCRRMRAAGP-VPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLRR 118 Query: 121 QKSKDEN 127 + + Sbjct: 119 AAVERPD 125 >gi|254424005|ref|ZP_05037723.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Synechococcus sp. PCC 7335] gi|196191494|gb|EDX86458.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Synechococcus sp. PCC 7335] Length = 617 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + V L G+ V ++++ EA + P +++D M + Sbjct: 22 RILIVDDTPTNLFVLSKLLTSAGYEVIQSSNGLEAL-MLAQSHQPALILLDIMMPDMDGH 80 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + V +L I R+GA ++ KPF E + ++ ++ Sbjct: 81 EVCRRLRTVSATAHIPVIFLSALDAPLNKIQAFRSGAADYVTKPFQTEEVIARVQLQIEL 140 Query: 121 QKSKDENQFLD 131 + ++ + ++ Sbjct: 141 RLARKRQEQIN 151 >gi|99082727|ref|YP_614881.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. TM1040] gi|99039007|gb|ABF65619.1| Phosphoserine phosphatase rsbU [Ruegeria sp. TM1040] Length = 423 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S + R++ +GF V EA S +A + C + P+ ++ D M G+ Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFDVVEAESGEDAMDICRADP-PDLILSDWMMPGMNG 77 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 +EF R T + L + + ++ G AGA+ FL KP + + LR + Sbjct: 78 IEFCRAFRADSHETYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 137 Query: 117 LPQMQKSKDENQFL 130 + +MQ+ E + Sbjct: 138 ILRMQRELFEKNRI 151 >gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A + +A P+ ++D M G+ F Sbjct: 8 KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAAT-YKPDAFILDVMMPGMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D +L + E I G GA+ ++ KPF+ E + +R + + Sbjct: 67 TLLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS 126 Query: 123 SKDENQ 128 S+DE + Sbjct: 127 SEDEQE 132 >gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + A + E PN +++D + G+ Sbjct: 5 QRILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFD-EFKPNLVLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRAKSG---TPVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIR 120 Query: 120 MQKS 123 S Sbjct: 121 RYNS 124 >gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 245 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEK-TQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D + + G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLV+ + ++ F F V EA +E +P+ +++D +E + Sbjct: 5 RMLLVEDDAALAELLIWHFKREDFEVVHTVDGEEAL-LLAQENMPDIVLLDWMVESLSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+M +V + L + E + G GA+ ++ KPF+ L + + + Sbjct: 64 EVCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123 Query: 121 QKSKDENQFL 130 + + L Sbjct: 124 VRPALAGETL 133 >gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + ++ ++ G+ +A EA L++D M + Sbjct: 1 MK-ILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTTPDIELLILDIMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + L + I G AGA+ ++ KPFN + ++ L + Sbjct: 60 GM-QVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKD 125 K + Sbjct: 119 TKMQA 123 >gi|307153190|ref|YP_003888574.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306983418|gb|ADN15299.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] Length = 589 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +R++ L F V EA + E LP+ ++ D M Sbjct: 1 MSKILVIEDELSIRELINELLTLADFEVVEAEDGQQGIEQALS-TLPDLILCDIMMPYKN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++ P + +L + + G GA+ +L KPF + L + Sbjct: 60 GYEVLQELQCHPETESIPFIFLTAKGTKFDIRQGMNLGADDYLTKPFTEDELLQTINIRL 119 Query: 119 QMQKSKDENQFLD 131 + + S ++ L+ Sbjct: 120 KKRFSIEQRYALE 132 >gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R++ + + G V EA+ EA E ++ + +V+D M + Sbjct: 1 MAKILVVDDDPNIRELIKVFLEEAGMEGVMEASDGVEALSVME-QVSVDLVVMDIMMPNM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ + V L + + +++ G G + +L+KPF L ++ L Sbjct: 60 DGWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKAL 116 Query: 118 PQMQK 122 + + Sbjct: 117 LKRYQ 121 >gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 246 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + + G+ V + + L N +V+D + G Sbjct: 13 RILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQ-MDKALSRELYNLMVLDLMLPGEDGL 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G AGA+ +L KPFN L ++ + + Q Sbjct: 72 SICRRLREATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRRQ 130 >gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4] gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4] Length = 240 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A++ E + P+ +++D M G+ F Sbjct: 14 RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTART-FRPDAVILDVMMPGMDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D V +L + E I+G GA+ ++ KPF+ E + +R + + Sbjct: 73 GLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 130 >gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum NCIMB 41171] gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 245 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEK-TQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D + + G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|218262520|ref|ZP_03476947.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii DSM 18315] gi|218223331|gb|EEC95981.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii DSM 18315] Length = 963 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 ++LL D + V + ++V +A + EA E E P+ ++ D M + Sbjct: 712 QTILLADDNQEVLQYLEQQL-CLDYVVVKAFNGKEALAMIE-ESYPHIVISDVMMPEMNG 769 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +++ + V L + ++ G AGA+ +++KPF L+ +R + Sbjct: 770 LELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNILS 829 Query: 120 MQKSKDEN 127 +++ Sbjct: 830 LREKMKTM 837 >gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 248 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 S+L+ D +R++ + G+ V+ A EA + + P+ +++D M Sbjct: 13 QSILVADDEVPIRRILGTRLSKIGYQVYTAADGVEALDVFYDQC-PDLIILDVMMPKLDG 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ + V + L + + I G GA+ +++KPF+ + L +R + + Sbjct: 72 YGVCQAVRK---TSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILR 128 Query: 120 M 120 Sbjct: 129 R 129 >gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 8/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ L GF AT+ EA E ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116 Query: 119 QMQKSKDEN--QFLDA 132 + ++ Q L+A Sbjct: 117 RRGGEAEDMLPQVLEA 132 >gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A++ E + P+ +++D M G+ F Sbjct: 9 RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTART-FRPDAVILDVMMPGMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D V +L + E I+G GA+ ++ KPF+ E + +R + + Sbjct: 68 GLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 125 >gi|332879261|ref|ZP_08446958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682681|gb|EGJ55581.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1414 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ R F V EA E E + LP+ +V D M + Sbjct: 1156 KKILVVEDHDEFRHFLMEQLQK-DFCVVEARDGVEG-EQAARTELPDLIVSDLMMPRMDG 1213 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + L + I G AGA+S++ KPFN E L+ +R+L + Sbjct: 1214 MELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIE 1273 Query: 120 MQKSKDEN 127 ++ + + Sbjct: 1274 QKERRQKM 1281 >gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + GF V + + +E P+ +V+D + + F Sbjct: 5 RILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEE-PDLIVLDVMLPDMNGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + +L + + E I G AG + ++ KPF+ + + ++ + + Sbjct: 64 SVTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRRTM 123 Query: 123 SKDENQFL 130 DE + Sbjct: 124 QADEESII 131 >gi|288929443|ref|ZP_06423288.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] gi|288329545|gb|EFC68131.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] Length = 963 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L++D + V +D + + A + + E +++P+ +V D M G L Sbjct: 712 RVLVIDDNVDVAAFIGSQLSDK-YAIIYAHNGRDGLNKAE-QMVPDVIVTDLMMPGVDGL 769 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + + + + ++ + G AGA+++L KPFNR+ LR + +L + Sbjct: 770 EVCRRIRANEVTSHIPIIVVTAKITEADRVKGLEAGADAYLAKPFNRDELRMRVEKLLEQ 829 Query: 121 QKSKDE 126 ++ E Sbjct: 830 RRLLRE 835 >gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLE-EKEFDLIILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRED-RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1559 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R L + + + A + P+ ++ D M G+ F Sbjct: 638 RVLLADDNADMRDYVMRLLREH-YDIAAVADGQAALALV-RHWKPDLVLADIMMPGLDGF 695 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ P + V L E G AGA+ +L+KPF+ L ++ + Sbjct: 696 ELLQALRESPATQQLPVILLSARAGEESRSEGLEAGADDYLIKPFSARELLARVQSQLHL 755 Query: 121 QKSKDENQ 128 + + + + Sbjct: 756 AELRRKAE 763 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 6/118 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LLV+ R L GF V A S EAR E + L+ D + Sbjct: 1439 RRVLLVEDHAPTRSALESLLVRRGFSVTAAASATEARALAASEH-FDLLISDIGLPDGSG 1497 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + +A R+ L E ++ RAG L KP + L A+ L Sbjct: 1498 YDLMAEFRERYGLVG---IALTGYGMEEDVMRSRRAGFKMHLTKPVRIQHLDQALATL 1552 >gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis] Length = 239 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD V + ++ G+ V A+ EA + E E P+ +V+D + Sbjct: 3 KKILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ L + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 61 IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 118 Query: 120 MQKSKD 125 + Sbjct: 119 RSEMAA 124 >gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 290 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD V ++ G+ V A EA E +E P+ LV+D + + F Sbjct: 27 TILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHRE-QPDLLVLDVMLPRLDGF 85 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ ++ KPF+ + L + + + Sbjct: 86 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142 >gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD ++ K R G V A EA E + + + +++D + Sbjct: 3 KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEY-DLILLDIMLPKYTG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ +DV V L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQMIRE---FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|330468337|ref|YP_004406080.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811308|gb|AEB45480.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + + G+ V A + +A + + P+ +V+D + + Sbjct: 1 MNRILVVDDEPQILRALGINLRARGYDVQVAATGTDALKAAARHP-PDLVVLDLGLPDLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + T V + L + + AGA+ ++ KPF + L +R + + Sbjct: 60 GV-EVIRGLRGWTGVPIIVLSGRAGSDDKVTALDAGADDYVTKPFGVDELLARIRAVTRR 118 Query: 121 QKSKD 125 + D Sbjct: 119 HTTAD 123 >gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 5/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ + G+ V A A E +K P +++D M + Sbjct: 8 KVLVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQK-FQPQLILLDIMMPNQDGV 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ P + F+ +L + +A GA+ ++ KP L + + Sbjct: 67 ETCRQLRETPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYFRR 126 Query: 121 --QKSKDENQ 128 +K KD N+ Sbjct: 127 DVKKQKDNNK 136 >gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4] Length = 234 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M +L+V+ + V + F G+ AT E E +++++D + G+ Sbjct: 1 MK-ILVVEDNESVCSMIEMFFLKEGWEGAFATDGKEGWALFESNPTGYDFILLDWMLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +V V L + + G GA+ ++ KPF+ TL ++ + + Sbjct: 60 DGITLCRKIRGVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAVRR 119 Query: 120 MQK 122 + Sbjct: 120 RYE 122 >gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 260 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 5/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD VR V G V A A P+ +V+D + G LE Sbjct: 34 VLVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTP-PDVVVLDLMLPGLGGLE 92 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R G + L + + + G GA+ ++ KPF+ L + + + Sbjct: 93 VCRALRAD--GDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRRT 150 Query: 122 KS 123 + Sbjct: 151 AA 152 >gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD +R+ R G A++ EA + + + +++D M Sbjct: 1 MKDSRVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNE-IHLILMDVMMPK 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + +R+ ++V + L + + I G GA+ ++ KPFN L ++ Sbjct: 60 MDGIVTTSLIRE---FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKS 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|229114252|ref|ZP_04243673.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669272|gb|EEL24693.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|53718676|ref|YP_107662.1| putative two-component system, response regulator [Burkholderia pseudomallei K96243] gi|76812145|ref|YP_332663.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1710b] gi|126441195|ref|YP_001058144.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126452418|ref|YP_001065379.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134281110|ref|ZP_01767819.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305] gi|167823237|ref|ZP_02454708.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 9] gi|167851424|ref|ZP_02476932.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei B7210] gi|167900223|ref|ZP_02487624.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 7894] gi|167916733|ref|ZP_02503824.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 112] gi|167918062|ref|ZP_02505153.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei BCC215] gi|217419788|ref|ZP_03451294.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|226194482|ref|ZP_03790080.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237811364|ref|YP_002895815.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei MSHR346] gi|242317517|ref|ZP_04816533.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254181365|ref|ZP_04887962.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254190765|ref|ZP_04897272.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254196970|ref|ZP_04903394.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254260088|ref|ZP_04951142.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254298308|ref|ZP_04965760.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|52209090|emb|CAH35031.1| putative two-component system, response regulator [Burkholderia pseudomallei K96243] gi|76581598|gb|ABA51073.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1710b] gi|126220688|gb|ABN84194.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126226060|gb|ABN89600.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134247416|gb|EBA47501.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305] gi|157808251|gb|EDO85421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157938440|gb|EDO94110.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|169653713|gb|EDS86406.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184211903|gb|EDU08946.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217397092|gb|EEC37108.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|225933567|gb|EEH29556.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237503023|gb|ACQ95341.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei MSHR346] gi|242140756|gb|EES27158.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254218777|gb|EET08161.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 241 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L + + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|148825917|ref|YP_001290670.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittEE] gi|319776338|ref|YP_004138826.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae F3047] gi|329123490|ref|ZP_08252054.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC 11116] gi|148716077|gb|ABQ98287.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittEE] gi|301170132|emb|CBW29736.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae 10810] gi|309973064|gb|ADO96265.1| Phosphate regulon transcriptional regulatory protein [Haemophilus influenzae R2846] gi|317450929|emb|CBY87155.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae F3047] gi|327471072|gb|EGF16527.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC 11116] Length = 231 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ +R++ + + V EA+ A ++ P +++D + G Sbjct: 3 RKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN--PKLILLDWMLPGRSG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++FI ++++ + + L + E IA AGA+ ++ KPF+ + L + + + Sbjct: 61 IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120 Query: 120 MQKSKDEN 127 + Sbjct: 121 RIYEQQSQ 128 >gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 7/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E K+ + +++D + + Sbjct: 3 RKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKA-KDKKYDIILLDLMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 LEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKS-KDENQFLDAI 133 S +E + +I Sbjct: 119 RAGSDHEEKEKAKSI 133 >gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus hominis subsp. hominis C80] gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus hominis subsp. hominis C80] Length = 236 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA + KE+ P +V+D + Sbjct: 3 QKVLVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKV-KEVKPELIVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKD 125 + + Sbjct: 120 RSQIAN 125 >gi|261344525|ref|ZP_05972169.1| transcriptional regulatory protein OmpR [Providencia rustigianii DSM 4541] gi|282567438|gb|EFB72973.1| transcriptional regulatory protein OmpR [Providencia rustigianii DSM 4541] Length = 239 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V A + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRILTRESIHLIVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|219847767|ref|YP_002462200.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] gi|219542026|gb|ACL23764.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] Length = 390 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 5/124 (4%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +LL+VD V ++ + + G+ V A S EA + K P+ L+ D + G Sbjct: 1 MKPPTLLIVDDDDAVAEMIELMLRNAGYEVRRAASGEEALQQIFKSP-PDALICDVLLPG 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + VRQ PL + + L + D IAG AGAN +L KPF L + ++ Sbjct: 60 IDGYTLCKRVRQHPLTRMLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPPELVYRVKN 119 Query: 117 LPQM 120 L Sbjct: 120 LLTR 123 >gi|85860919|ref|YP_463121.1| response regulator receiver domain-containing protein [Syntrophus aciditrophicus SB] gi|85724010|gb|ABC78953.1| response regulator receiver domain and a sigma factor phosphatase domain [Syntrophus aciditrophicus SB] Length = 402 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D S +R + G+ + EA + + P+ +++D M G+ Sbjct: 1 MKEKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKA-WKPDLILLDIVMPGI 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ D+ V +L + I G G ++ KPF+R + + Sbjct: 60 DGYQVCRSIKGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPFDRGEVMARIENQ 119 Query: 118 PQMQKS 123 +++ Sbjct: 120 FKIRHL 125 >gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + +V GF V EA +A E + +++D + + F Sbjct: 2 RVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELF---PRADLIILDLMLPKLDGF 58 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + L + E+ + G GA+ +++KPF+ + + ++ L + Sbjct: 59 KVLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRAG 118 Query: 123 SKDEN 127 K+E Sbjct: 119 LKEEL 123 >gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + + G+ V A + E+ + +++D + + Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ V V + + + G GA+ +++KPF+ + + ++ + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117 Query: 119 QMQKSKDEN 127 E Sbjct: 118 SRTYGASEE 126 >gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + V + + V A + + E + +++D + + Sbjct: 2 RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEA-FPYDLILLDVMLPKLDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L + E + G GA+ +++KPF+ L +R L + Sbjct: 61 SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRR 118 >gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483] gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + +FG V + + E + L++D M Sbjct: 1 MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGNTGWKILQDEP-FDLLILDIIMPKIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE RQM + V L E ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 60 GLELCRLYRQMFGY-QIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 118 Query: 119 QMQK 122 + K Sbjct: 119 RRNK 122 >gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+++ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 4 SILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX] gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX] Length = 241 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L++D +R + + GF V A S E E P+ +++D + + F Sbjct: 12 VLVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSE-RPDLILLDVLLPDISGFD 70 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V YL + G G + ++ KPF+ E L +R L + K Sbjct: 71 VCRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVK 129 >gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 248 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 8/128 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL----PNYLVIDESME 57 +L+V+ ++R++ + G+ V A+ A + + L++D + Sbjct: 19 KQVLVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLP 78 Query: 58 --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 L+ +R G + + L + + G GA+ +L KPF+ L R Sbjct: 79 QVNGLDLCRLLR--YRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCR 136 Query: 116 ELPQMQKS 123 L + Q Sbjct: 137 ALIRRQHL 144 >gi|293369031|ref|ZP_06615630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635903|gb|EFF54396.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1321 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R L + ++V ++ +A +E P+ ++ D M + Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A V+ + + V L D + M+ G GA++++ KPF+ LR +R + Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186 Query: 120 MQKSKDE 126 + Sbjct: 1187 NRALLKR 1193 >gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] Length = 237 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCKKLR---DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 244 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R++ GF V ATS A E + P+ +V+D + F Sbjct: 18 RLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRH-RPDLIVLDVMLPDFDGF 76 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R GT V +L I G G + ++ KPF+ E + + + + + Sbjct: 77 AVVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRAR 136 >gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 237 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 3/118 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 L+V+ + ++ R + F V A + E + N +++D + E Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPY-NLIILDLMLPTLDGWEI 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + L + + + G + GA+ +L KPF + L + Sbjct: 68 CRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRR 125 >gi|224536005|ref|ZP_03676544.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM 14838] gi|224522372|gb|EEF91477.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM 14838] Length = 1219 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ F+ + + A + E E K+ +P+ ++ D M + Sbjct: 1072 ILVVEDNDDIREYIASSFSS-NYRIITAINGKEGLEQALKQ-IPDIIISDIMMPIMDGIE 1129 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1130 LCKQVKEDIRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLLESR 1189 Query: 122 KSKD 125 K Sbjct: 1190 KKLA 1193 >gi|167561993|ref|ZP_02354909.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis EO147] gi|167569245|ref|ZP_02362119.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis C6786] Length = 241 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + G D+ V L D I G GA+ +L KPFN L + + + Sbjct: 60 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|190015554|ref|YP_001967362.1| DNA-binding response regulator [Bacillus cereus] gi|217956894|ref|YP_002335990.1| DNA-binding response regulator [Bacillus cereus AH187] gi|116584461|gb|ABK00578.1| DNA-binding response regulator [Bacillus cereus] gi|217068621|gb|ACJ82869.1| DNA-binding response regulator [Bacillus cereus AH187] Length = 226 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59 M +L+V+ I+R+ H F+ G+ V A + E+E + +++D + + Sbjct: 1 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L D + + G GA+ ++ KPF L + L Sbjct: 61 DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117 Query: 118 PQMQKSKDENQ 128 + + + Q Sbjct: 118 FKDTNQQVQYQ 128 >gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus haemolyticus JCSC1435] gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus haemolyticus JCSC1435] Length = 236 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA E E+ P +V+D + Sbjct: 3 QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKV-NEIQPELVVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDENQFLD 131 K E + D Sbjct: 120 RSKFASEIEKAD 131 >gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + + GF EA EA + + + +++D M Sbjct: 4 RTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPV-DAVLLDVMMPKQDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R +DV + +L + + G + G + +++KPF+ L + + + Sbjct: 63 FAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRV 121 Query: 122 KSKDEN 127 + EN Sbjct: 122 QRVREN 127 >gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] Length = 243 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E E+ L P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIER-LQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V YL D + + G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 QQVED 131 >gi|220907975|ref|YP_002483286.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219864586|gb|ACL44925.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 381 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 4/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD S + + + G+ V AT A E P+ +++D M G+ E Sbjct: 15 ILVVDDSADNLFLIQTILESEGYEVSTATHGKAALEQVV-NAPPDLVLLDVMMPGMNGYE 73 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + + + G GA+ F+ KP + L +R L +++ Sbjct: 74 VTRRIRLNKSLPFMPILLITAHDRPR-VAEGLDLGADDFIRKPVEYDELLARVRSLLRLK 132 Query: 122 KSKDENQFLD 131 +S DE + Sbjct: 133 RSVDERDEIA 142 >gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] Length = 234 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F +A + PN +++D + G+ Sbjct: 5 QKILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDT-YHPNLVLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRARA---NTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLR 120 Query: 120 MQKS 123 ++ Sbjct: 121 RYQA 124 >gi|73538429|ref|YP_298796.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Ralstonia eutropha JMP134] gi|72121766|gb|AAZ63952.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 396 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD R++ R G+ A P+ +V+D + G LE Sbjct: 5 VLIVDDDAETRRLLREYLQKQGYRATAVADGR-ALRAALGTARPDLIVLDLMLAGKDGLE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +++ + L + + G GA+ +++KPFN L ++ + + Sbjct: 64 LCRDLRTR---SNLPIIMLTARDEETDRVVGLEMGADDYVVKPFNPRELLARIKSVLRRA 120 Query: 122 KSKDEN 127 +S +N Sbjct: 121 RSLPDN 126 >gi|16273290|ref|NP_439531.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae Rd KW20] gi|68250104|ref|YP_249216.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 86-028NP] gi|145629534|ref|ZP_01785332.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 22.1-21] gi|145632874|ref|ZP_01788607.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 3655] gi|145634311|ref|ZP_01790021.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittAA] gi|145639024|ref|ZP_01794632.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittII] gi|148826862|ref|YP_001291615.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittGG] gi|229844161|ref|ZP_04464302.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 6P18H1] gi|229846768|ref|ZP_04466875.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 7P49H1] gi|260580787|ref|ZP_05848613.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|260582709|ref|ZP_05850497.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|319897031|ref|YP_004135226.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Haemophilus influenzae F3031] gi|1172480|sp|P45189|PHOB_HAEIN RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB) [Haemophilus influenzae Rd KW20] gi|68058303|gb|AAX88556.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 86-028NP] gi|144978377|gb|EDJ88141.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 22.1-21] gi|144986530|gb|EDJ93096.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 3655] gi|145268291|gb|EDK08285.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittAA] gi|145271996|gb|EDK11905.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittII] gi|148718104|gb|ABQ99231.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittGG] gi|229810257|gb|EEP45976.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 7P49H1] gi|229813155|gb|EEP48843.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 6P18H1] gi|260092604|gb|EEW76541.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|260094275|gb|EEW78175.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|309750983|gb|ADO80967.1| Phosphate regulon transcriptional regulatory protein [Haemophilus influenzae R2866] gi|317432535|emb|CBY80895.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae F3031] Length = 231 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ +R++ + + V EA+ A ++ P +++D + G Sbjct: 3 RKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN--PKLILLDWMLPGRSG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++FI ++++ + + L + E IA AGA+ ++ KPF+ + L + + + Sbjct: 61 IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120 Query: 120 MQKSKDEN 127 + Sbjct: 121 RIYEQQSQ 128 >gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1102 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD ++ L + G+ V + A + K P+ +++D M + Sbjct: 12 SILIVDDMVDNLRLLSDLLTEQGYKVRGVSKGTMALKAA-KSFSPDLILLDIMMPEMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ D+ + ++ D + G ++ KPF E + ++ ++ Sbjct: 71 EVCQHLKAAENTCDIPIIFISALNDAADQLKAFAVGGVDYITKPFRIEEILARVKNHLRL 130 Query: 121 QKSKD----ENQFLD 131 ++ + +N+ L+ Sbjct: 131 RELQKKLAQQNERLE 145 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL + + G+ V A + EA + +EL PN +++D M + Sbjct: 979 ILLAEDNEANISTIVEYLEAVGYRVATALNGVEAIQMA-RELKPNLVLMDIQMPAMDGLE 1037 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L G N +L KP + + L A+ Sbjct: 1038 ATRQLRADVEFVQLPIIALTSLAMPGDREKCLEVGVNEYLAKPVSLKKLVEAIAFQLDR 1096 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ S + H + G S+ ++ P+ +++D + + Sbjct: 845 VLIVEDSAPAAEQIAHYLAELGINNSAIYSLGTGIVQEAIQINPDAIILDLQLPDRSGWD 904 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +A ++ P ++ + + + + + A +L+KPF+R + A+R+L Sbjct: 905 VLAQLKAEPRTQNIPILIVSVADEP---VRSPAASVYEYLVKPFSRHQFQLALRKL 957 >gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 235 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A + +A P+ ++D M G+ F Sbjct: 10 KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAAT-YKPDAFILDVMMPGMDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D +L + E I G GA+ ++ KPF+ E + +R + + Sbjct: 69 TLLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS 128 Query: 123 SKDENQ 128 S+DE + Sbjct: 129 SEDEQE 134 >gi|153867938|ref|ZP_01998111.1| two component system response regulator [Beggiatoa sp. SS] gi|152144742|gb|EDN71889.1| two component system response regulator [Beggiatoa sp. SS] Length = 258 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L VD + +V +L + + V E E E+ P+ +++D M + Sbjct: 25 TILAVDDEPVNLQVVTNLLSLENYTVKTVMGGAETFELLEQGEKPDLILLDIMMPKMTGY 84 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ T++ + L + ++ G GAN ++ KP ++ L ++ + Sbjct: 85 EVCQKLREQYSATELPIMLLTAKNQVSDLVEGLNVGANDYITKPVSKNELLARIKTHLNL 144 Query: 121 QKSKDENQFLDA 132 + K EN L+A Sbjct: 145 SRLKTENIRLNA 156 >gi|84496310|ref|ZP_00995164.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84383078|gb|EAP98959.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 238 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + V A A + + LP+ +++D + + Sbjct: 3 MSRILVVDDEPHLVRTLAINLRARDYEVETAGDGRSALQAVHDQ-LPDLVILDLGLPDID 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V L D + GA+ ++ KPF + L +R + Sbjct: 62 GV-DVLRRIRETSQTPVIVLSARADSIDKVEALDLGADDYVTKPFAVDELLARIRVALRR 120 Query: 121 QKSKD 125 + + Sbjct: 121 TQDES 125 >gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+V+ + + R+ G+ V EA +E +P+ L++D + G Sbjct: 3 TNILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRL-RESVPDLLILDWMLPGLSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R P + + L + + + G GA+ +++KPF+ L +R L + Sbjct: 62 IELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLR 121 Query: 120 MQKSKDENQFLDA 132 K + + L A Sbjct: 122 RAKPEHISTLLRA 134 >gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] Length = 229 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 8/125 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + F D G+ V A++ EA E+C+K+ + +++D M + Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDKD--IDIILLDIMMPNI 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R + +L I G G + +++KPF+ + L+ ++ Sbjct: 59 DGFQVCQKIRNK---VSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAH 115 Query: 118 PQMQK 122 + +K Sbjct: 116 LRREK 120 >gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] Length = 233 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F ++ +A E PN +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFET-YQPNLVLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + L + + + G GA+ +++KPF+ + + +R + + Sbjct: 64 YQVCRELRAK---SQVPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RYQ 123 >gi|86609393|ref|YP_478155.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557935|gb|ABD02892.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 121 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ S R++ L + GF V EA E ++ P+ +V+D M + Sbjct: 1 MSRVLVVEDSQSQREMISKLLQENGFEVMTVEDGVEAVEAVKQNK-PDLIVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ PL + + + G R GA++++ KPF + L +++L Sbjct: 60 GYEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGIRQGADAYIAKPFQPQELVGTIKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW--NEQPDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFREKE--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 224 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K+ + V A + EA ++ + + L++D M + Sbjct: 1 MK-ILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEY-DLLIVDIMMPEMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G+ V V +L + + G +G + +L+KPF + L +R L + Sbjct: 59 GLTLVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRR 118 Query: 121 QKSKDENQ 128 ++ + Sbjct: 119 SNAQQTAR 126 >gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 1/129 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD V V R F GF V E S +A E + L++D + G+ Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETY-DLLILDIGLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G + V L D + G GA+ +++KPF+ L +R L + Sbjct: 60 GFGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRR 119 Query: 121 QKSKDENQF 129 + Sbjct: 120 TAEASRLRQ 128 >gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 226 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + V A A E + + +V+D + F Sbjct: 2 RVLIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADP-FDLIVLDLMLPEKDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G V L + + + + G GA+ +L KPF+ L +R L + Sbjct: 61 TVLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSH 120 Query: 123 SK 124 + Sbjct: 121 EQ 122 >gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 226 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + ++ GF V A +E + +++D + Sbjct: 1 MPRILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENY-DLVILDIMLPKFD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ V + E + G AGA+ ++ KPF+ + L ++ + Sbjct: 60 GMKVCRKIRE---TKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVL 116 Query: 119 QMQKSKD 125 + + K+ Sbjct: 117 RRYRKKE 123 >gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12] Length = 255 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + G+ A + EA E E E+ + +++D + G+ Sbjct: 21 MTRILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYE-EMEFDLVLLDLMLPGIS 79 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R+M V + + + +I G GA+ ++ KP++ L + + + Sbjct: 80 GTTLC-RRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRR 138 >gi|167040684|ref|YP_001663669.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter sp. X514] gi|166854924|gb|ABY93333.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter sp. X514] Length = 318 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + RK+ + + + G+ V EA EA + K LP+ +++D M G+ Sbjct: 12 RNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIY-KNKLPDMVILDIVMPGMTG 70 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + +R+ + + L + +FE+ I G GA+ +L+KPFN + L F + L Q Sbjct: 71 FDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNNLFQ 130 Query: 120 MQK 122 + Sbjct: 131 RIE 133 >gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016] gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+ D + + K+ R GF V A + EA + E + P +++D M Sbjct: 3 KNILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFE-QYNPQIILLDIMMPIFDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R ++ + + + I G +GA+ +++KPF+ + ++ + + Sbjct: 62 MEVCKLIRLK---SNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFR 118 Query: 120 MQKSKDENQ 128 + N+ Sbjct: 119 RITAHKNNE 127 >gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 226 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLVD +R+ + D GF V A + E +++ P+ ++ D M + Sbjct: 5 LLLVDDEPGLREAVQAYLEDSGFSVAAAPNAQAGWELLQQQT-PDLVITDIMMPQVDGYQ 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R P + + V +L + I G AG +++L KPF+ + L ++ + + + Sbjct: 64 FLQQLRDDPRYSRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNILRQR 123 Query: 122 KSKDENQ 128 ++ ++ Sbjct: 124 TNQQSSE 130 >gi|307152144|ref|YP_003887528.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306982372|gb|ADN14253.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 360 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD ++ + + G+ ATS +A E P+ +++D M + Sbjct: 55 ILVVDDLSKNLQLVVDILDHSGYATTFATSGQQAFERVRTAH-PDLILLDLMMPEMNGLQ 113 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ + +L + ++ + GA ++ KPF L ++ +++ Sbjct: 114 VCEKLKSNQEYQEIPIIFLTASDEEGDLLEAFKLGAVDYVTKPFRAAELLARVKNHLELK 173 Query: 122 KSKDENQ 128 +++DE + Sbjct: 174 RTRDELK 180 >gi|291571978|dbj|BAI94250.1| adenylate cyclase [Arthrospira platensis NIES-39] Length = 344 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 ++VD + I R + G+ V A++ EA + L + +++D M + Sbjct: 1 MIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPL-DLVLLDIMMPQMNGYQV 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++ + V + D + ++ GA +L KPFN LR + + ++ Sbjct: 60 LESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACLEKKR 119 Query: 123 SKDENQ 128 +D+ Q Sbjct: 120 LRDQEQ 125 >gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] Length = 247 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V+ AT+ +A + +E P+ +++D M G+ F Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 81 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138 >gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 226 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ D +R V R GF V EA A E E L P+ +++D M + Sbjct: 2 ILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAES-LRPDLIILDIGMPEMDGLE 60 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + +DV + +L D + G GA+ ++ KPF+ L +R + + Sbjct: 61 VC-RALRKTSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKRSNG 119 Query: 124 KDENQ 128 + Q Sbjct: 120 EVAEQ 124 >gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 235 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + E E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVE-EYNPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDE 126 + Sbjct: 121 DLTQK 125 >gi|29346092|ref|NP_809595.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337986|gb|AAO75789.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 245 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +FG V ++E + +++D M Sbjct: 22 MAKILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEP-FDLVILDIIMPKIN 80 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE RQM V L E ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 81 GLELCHLYRQMFGY-QAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 139 Query: 119 QMQKSKDENQF 129 + K NQ Sbjct: 140 RRNKETVTNQL 150 >gi|320160493|ref|YP_004173717.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994346|dbj|BAJ63117.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 363 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +VR L G+ EA+ +A + + P+ ++ D M V Sbjct: 1 MTRILVVEDEEMVRANIVDLLEAEGYETQEASDGEQALQLIWQNP-PDLILCDVRMPRVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +A + Q P + +L V+ E G GA+ ++ KPF R+ L A++ Sbjct: 60 GFTFLARISQEPRLRAIPFIFLTARVEREDQRLGMNLGADDYITKPFTRKDLLTAVQRRL 119 Query: 119 QMQKSKDE 126 + + E Sbjct: 120 EKHRHIGE 127 >gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 232 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M+ LL+++ +R R L + G+ + EA E + + + L+ID M Sbjct: 1 MNKLLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQKFDST--FDLLIIDIMMPNIS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +R+ + V + +L + + AG + +L+KPF+ L ++ L Sbjct: 59 GIDVCRKIREK---SYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALI 115 Query: 119 QMQKSKD 125 + + D Sbjct: 116 RRCRVYD 122 >gi|256751275|ref|ZP_05492155.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter ethanolicus CCSD1] gi|307266238|ref|ZP_07547780.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1] gi|320115595|ref|YP_004185754.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390556|ref|ZP_08212112.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter ethanolicus JW 200] gi|256749830|gb|EEU62854.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter ethanolicus CCSD1] gi|306918768|gb|EFN49000.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1] gi|319928686|gb|ADV79371.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993381|gb|EGD51817.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter ethanolicus JW 200] Length = 310 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 5/126 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+VD + + RK+ + + + G+ V EA EA + + LP+ +++D M G Sbjct: 1 MKGRNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIY-RNKLPDMVILDIVMPG 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F + +R+ + + L + +FE+ I G GA+ +L+KPFN + L F + Sbjct: 60 MNGFDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNN 119 Query: 117 LPQMQK 122 L Q + Sbjct: 120 LFQRIE 125 >gi|224370414|ref|YP_002604578.1| two-component transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223693131|gb|ACN16414.1| two-component transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 368 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD ++ L G+ V + A E EK + P+ +++D M G+ Sbjct: 9 TILVVDDEPRNLRLMEALLIPMGYRVQLVENGEAALELLEK-ISPDVILLDVMMPGMDGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ V + + + + AGA+ FL KP ++ L +R L ++ Sbjct: 68 EVARQVKSREKTRSVPIVMVTALREVTDRVKALEAGADDFLTKPVDKTELTARVRSLVKV 127 Query: 121 QKSKDE----NQFLDA 132 + D + L+A Sbjct: 128 KAYHDHMTNYQKELEA 143 >gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V EA E + P+ +++D + V Sbjct: 1 MTRVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDN--PDLVLLDLGLPKVD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L D + G AGA+ ++ KPF L +R L + Sbjct: 59 GLEVCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 118 >gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 217 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 7/132 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ +RK+ + GF V EA+ EA E + + + +++D + Sbjct: 1 MK-ILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKF-QPSMYSVVILDVMLPQKD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ D V L + + I G GA+ +++KP + + + ++ + Sbjct: 59 GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115 Query: 119 QMQKSKDENQFL 130 + K ++ L Sbjct: 116 KRSKKSSSDEIL 127 >gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] Length = 236 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD ++ G+ VF A EA E K ++++D + G+ Sbjct: 7 KNVLIVDDETMICDSVSAYITKQGYHVFTAGDGKEALEIFRK-YPIMFVILDLMLPGMTG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V V L + E ++ G GA+ ++ KPF+ + L M + + Sbjct: 66 EEICQAIRRQSR---VPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|27363525|ref|NP_759053.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6] gi|37679274|ref|NP_933883.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016] gi|27359641|gb|AAO08580.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6] gi|37198017|dbj|BAC93854.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016] Length = 242 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + G+ V + + + + P +++D + G Sbjct: 5 TRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V + L + I G GA+ ++ KPFN L ++ + + Sbjct: 65 FSLCQFMRRE---STVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLR 121 Query: 120 MQKSKDE 126 E Sbjct: 122 RVHVTQE 128 >gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 246 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + GF V A + +A + K P+ +++D + + Sbjct: 6 TRVLVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTH-PDLVILDVMLPDIDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R G V +L E + G G + ++ KPF+ L + + + Sbjct: 65 FEVARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRRT 124 Query: 122 K 122 + Sbjct: 125 R 125 >gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781] gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763] gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299] gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus A6224] gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948] gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117] gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765] gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102] gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus 132] gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754] gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819] gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus MR1] gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796] gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus] gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122] gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781] gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763] gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299] gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus A6224] gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948] gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20] gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102] gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765] gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117] gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981] gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754] gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819] gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796] gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus JKD6159] gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46] gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131] gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172] gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189] gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193] Length = 219 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + + V + + + +++D + Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYY-DLIILDLMLPSIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + D +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPQKD 123 >gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF+V + +A + + +V+D + G Sbjct: 7 KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQA-DRLLTRENFSLMVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + V L + D I G GA+ +L KPFN L +R + + Sbjct: 66 SICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRH 124 >gi|294810650|ref|ZP_06769299.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442119|gb|EFG10937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1321 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R L + ++V ++ +A +E P+ ++ D M + Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A V+ + + V L D + M+ G GA++++ KPF+ LR +R + Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186 Query: 120 MQKSKDE 126 + Sbjct: 1187 NRALLKR 1193 >gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 236 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 6/131 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD V + + G+ V A A + P+ +++D + + Sbjct: 3 QKILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDK-PDLILLDCMLPRMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ V + + + + + G GA+ ++ KPF+ + ++ + Sbjct: 62 VDVCKKIRQSSS---VPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATLR 118 Query: 120 MQKSKDENQFL 130 D+ Q + Sbjct: 119 RMGFVDQEQAI 129 >gi|238024581|ref|YP_002908813.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1] gi|237879246|gb|ACR31578.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1] Length = 1416 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+ D + +R + L + + V A +A ++ P+ ++ D M G Sbjct: 625 TRILVADDNADMRAYVQRLLGEQ-YEVSCAVDGYDALRAAKRS-RPDLILSDIMMPGLDG 682 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + VR DV V L E + G RAGA+ +L+KPF+ L + L + Sbjct: 683 IGLLQTVRGDEELRDVPVILLSARAGEEARVHGLRAGADDYLVKPFSARELVVRVGALLK 742 Query: 120 MQKSKDENQ-FLDAI 133 + + +++ A+ Sbjct: 743 ITAQRRKSEGRFRAL 757 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + L G V A S +A C + P ++D + G+ Sbjct: 1301 RVLIVDDNVDAADSLSALLRLQGHTVEVAYSAEDAI-RCAEAFCPQVALLDIGLPGMSGY 1359 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 E +R P + + + + AG + L+KP L ++ Sbjct: 1360 ELARTLRAKPRLAGMRLVAVTGYGQTNDVHTAHEAGFDEHLVKPVEPSALVRSL 1413 >gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] Length = 234 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F +A P+ +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMMVHDGEKAL-IAYDTYHPSLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R ++V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIRAK---SNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLR 120 Query: 120 MQKS 123 ++ Sbjct: 121 RYQA 124 >gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590] Length = 241 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + F + EA+ EA E +++D + + Sbjct: 3 KEILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNY-ACILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + D + L + + + G +GA+ +++KPF+ + ++ L + Sbjct: 62 IEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT 120 Query: 122 KSKDENQ 128 +S Q Sbjct: 121 QSTSAEQ 127 >gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 238 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 1/123 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V V R G V + +A E+E P+ +V+D M G+ Sbjct: 11 VLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEP-PDLVVLDLMMPGLDGIE 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + V L D +AG GA+ ++ KPF+ L +R + + Sbjct: 70 VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129 Query: 124 KDE 126 +D Sbjct: 130 QDR 132 >gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2] gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2] gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2] Length = 224 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + +FG V + + E + L++D M Sbjct: 1 MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEP-FDLLILDIIMPKIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE RQM + V L E ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 60 GLELCRLYRQMFGY-QIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 118 Query: 119 QMQK 122 + K Sbjct: 119 RRNK 122 >gi|212711645|ref|ZP_03319773.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM 30120] gi|212685747|gb|EEB45275.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM 30120] Length = 239 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V A + + + + +V+D + G Sbjct: 6 KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRLLTRESIHLIVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|218236076|ref|YP_002365447.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218164033|gb|ACK64025.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 225 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNLPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|145301083|ref|YP_001143924.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853855|gb|ABO92176.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ GF V A E R+ P+ +++D M G Sbjct: 5 KQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLALHS-PDLIILDIMMPGDDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V + L D + G GA+ ++ KPF+ L+ ++ L + Sbjct: 64 FTLCQQIRRD---SQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLR 120 Query: 120 MQKSKDENQ 128 + + + Sbjct: 121 RAEFRQPEK 129 >gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] Length = 239 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V AT+ +A + +E P+ +++D M G+ F Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRA-REARPDAVILDVMMPGMDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 73 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 >gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 237 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + G++V A + N +++D + + Sbjct: 6 RILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDY-NLVILDIMLPDTDGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R++ T++ + L + G R GA+ ++ KPF L ++ + Sbjct: 65 EVCRTIREI---TNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRR 121 >gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1175 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + V A+ E E + + +++D ++ + Sbjct: 1 MK-ILVVEDDELTAQALVATLASQNYTVETASDGQEGWE-LTEAFAYDLILLDVTLPKLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + L G AGA+ +++KPF E L +R L + Sbjct: 59 GITLCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRR 118 Query: 121 QKSKDE 126 + + Sbjct: 119 NQLTSQ 124 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++VD + + R L +G + + E E P+ L++D M Sbjct: 513 RVMVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLET-TSPDLLILDIEMPQISGT 571 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR + + + +L D E + GA+ F+ KP L + + Sbjct: 572 ELCQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLER 631 Query: 121 QKSKDEN 127 ++ Sbjct: 632 IRAVKRE 638 Score = 47.1 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 7/126 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV---- 59 LL+VD + K +GF + AT++ AR P+ ++++ ++ Sbjct: 389 LLIVDRDRSLAKKLIAEATTWGFDLEVATNLTIARNKI-GLKSPDLVLLEPAIFPTAAES 447 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L +A +++ + D + AR G ++FL K + A+ ++ Sbjct: 448 LTLLAELKKHA--PPIPAIIFTERDDLTTRLEVARLGEHTFLPKSVPPSQILDAINQVLH 505 Query: 120 MQKSKD 125 + Sbjct: 506 QVDREK 511 >gi|256842620|ref|ZP_05548121.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256735757|gb|EEU49090.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1321 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R L + ++V ++ +A +E P+ ++ D M + Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A V+ + + V L D + M+ G GA++++ KPF+ LR +R + Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186 Query: 120 MQKSKDE 126 + Sbjct: 1187 NRALLRR 1193 >gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 229 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S +L++D + + R G+ V+ A + E P+ +++D M V Sbjct: 1 MRSAILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSAD-PDLIILDVMMPKV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F R G+ V V L + + E + G GA+ +L+KPF E L +R L + Sbjct: 60 DGFEVCRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLR 119 Query: 120 MQKS 123 + S Sbjct: 120 RKDS 123 >gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 234 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + GF V A EA E E P ++++D + Sbjct: 3 KKVLVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFE-QPAFIILDLMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +RQ + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 VEVCKQLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKS 123 + Sbjct: 120 RTQL 123 >gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium KLH11] gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium KLH11] Length = 229 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V + + GF V A S EA +E P+ +V+D M + Sbjct: 7 TVLVVEDELAQREVLAYNLDAEGFRVSRAASGDEAL-LLVEEDRPDIIVLDWMMPNLSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + + L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 VRPATVGIRLE 136 >gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 1514 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R + L D ++V A E +++ P+ L+ D M + Sbjct: 649 RILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQ-RPDLLLTDIMMPRLNGL 706 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R D+ + L E I G +A A+ +L+KPF+ L + +M Sbjct: 707 ALLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACLKM 766 Query: 121 QKSKDE 126 + + E Sbjct: 767 AQIRQE 772 >gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp. avium ATCC 25291] gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] Length = 239 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V AT+ +A + +E P+ +++D M G+ F Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRA-REARPDAVILDVMMPGMDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 73 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 >gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546] gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546] Length = 231 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + + + GF V EA + E E + +++D M + Sbjct: 1 MPHILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELL--SNDIDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKD 125 +S Sbjct: 118 TQSSA 122 >gi|302526266|ref|ZP_07278608.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302435161|gb|EFL06977.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 266 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ VR R G V + E E + +V+D + G+ Sbjct: 37 MPRVLLIEDDRAVRDGLRLALTYQGHTVDAVETGEEGLARL-AEDPADVVVLDLMLPGMD 95 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R G D+ + L D ++AG AGA+ +++KP L +R + + Sbjct: 96 GFEVCRRIRAAG-DLPIIMLTARNDDIDVVAGLEAGADDYVVKPAQARVLEARIRAVLRR 154 >gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R G+ V A +A E E P L++D M + Sbjct: 2 KILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEH-PELLILDVMMPNMDGL 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G D + L +AG AGA+ +L KPF E L +R L + Sbjct: 61 EVCRTLR--SEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRR 118 Query: 121 QKSKD 125 ++ Sbjct: 119 AAAES 123 >gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 243 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK + P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D + I G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 233 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ + ++ G A + +A ++LP+ +++D + G + Sbjct: 4 NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAANLI-SDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|34497033|ref|NP_901248.1| sensory box/GGDEF family protein [Chromobacterium violaceum ATCC 12472] gi|34102890|gb|AAQ59254.1| probable sensory box/GGDEF family protein [Chromobacterium violaceum ATCC 12472] Length = 712 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + L + G+ V A S EA + K P+ +++D SM G+ Sbjct: 7 ILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHP-PDLILLDFSMPGMDGLA 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P D+ + +L D + + G AGA F++KPF R L + + Sbjct: 66 VCRELKLNPRTRDIPILFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNTHLDLA 125 Query: 122 KSKDENQFL 130 + K L Sbjct: 126 RLKKRLSKL 134 >gi|29345677|ref|NP_809180.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337569|gb|AAO75374.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1370 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LLLV+ + + + + + + V A EA K+ + ++ D M + Sbjct: 1124 LLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALN-VIKDNEIDIIISDVMMPEMDGLE 1181 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + + + L + E I AGA+ ++ KPF + L + + Sbjct: 1182 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFIMHK 1241 Query: 122 KSKDEN 127 K+K E Sbjct: 1242 KNKQEE 1247 >gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 227 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R G+ V A A P+ +++D M G+ Sbjct: 2 RVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINM-RRPDVVILDVLMPGLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G DV V L +AG AGA+ +L+KPF E L +R L + Sbjct: 61 ETCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRR 118 >gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 227 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ +RK + G+ +FEA S E E +E LP+ +V+D + G+ Sbjct: 1 MKTKVLLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRE-LPDIVVLDIMLPGI 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + + L + + I G + G + +L KPFN L ++ + + Sbjct: 60 DGFEVCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIER 119 Query: 120 MQKSKDENQ 128 + +EN+ Sbjct: 120 RLEIGEENE 128 >gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] Length = 1389 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + +R L G V A + E + +V D M G L Sbjct: 632 RVLVADDNADMRGYLTRLLRGAGHTVVAVNDGRAALDALRAEP-FDLVVSDVMMPGLDGL 690 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +A +R V V L E + G AGA+ +L+KPF L +R ++ Sbjct: 691 ELVAALRADRRTASVPVLLLSARAGEEASVQGLEAGADDYLVKPFAAADLLARVRANVEL 750 Query: 121 QKSKDENQF 129 + + ++ Sbjct: 751 ARLRGQHAR 759 >gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 233 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A +A + E E + +++D M + Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLIILDIMMPNMDGI 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 68 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 >gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 241 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA+ EA + +++D + + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNY-ACILLDLMLPEMDGIE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + D + L + + + G +GA+ +++KPF+ + ++ L + +S Sbjct: 64 VASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 124 KDENQ 128 + Q Sbjct: 123 ANSEQ 127 >gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104] gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22] gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322] gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis CH188] gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG] gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis] gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104] gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22] gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322] gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis CH188] gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG] gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137] gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017] gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027] gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141] gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244] gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012] gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031] gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043] gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312] gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645] gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302] gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341] gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342] gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346] gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B] gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630] gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A] gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62] gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF] Length = 229 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 2/133 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + ++ ++ G+ V +A EA + L++D M + Sbjct: 1 MK-ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + L + I G AGA+ ++ KPFN + ++ + + Sbjct: 60 GM-EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118 Query: 121 QKSKDENQFLDAI 133 + + + D + Sbjct: 119 SQMQLTKEEPDEL 131 >gi|54309357|ref|YP_130377.1| DNA-binding response regulator OmpR [Photobacterium profundum SS9] gi|46913793|emb|CAG20575.1| hypothetical DNA-binding response regulator OmpR [Photobacterium profundum SS9] Length = 261 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD +R + + + + V A E E C ++ + +V+D + G Sbjct: 16 LLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNE-MEQCLRDNSIDLIVLDLMLPGKDGLT 74 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + +++ V L + I G GA+ +L KPFN L ++ + + Sbjct: 75 LC-RELRVHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARVKAVIRR 130 >gi|253567663|ref|ZP_04845074.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841736|gb|EES69816.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1348 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LLLV+ + + + + + + V A EA K+ + ++ D M + Sbjct: 1102 LLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALN-VIKDNEIDIIISDVMMPEMDGLE 1159 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + + + L + E I AGA+ ++ KPF + L + + Sbjct: 1160 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFIMHK 1219 Query: 122 KSKDEN 127 K+K E Sbjct: 1220 KNKQEE 1225 >gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 230 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD + ++ G+ A S EA + EK+ ++++D M + Sbjct: 1 MMNILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFK-FILLDIMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + ++ G + GA+ ++ KPF+ + L + + Sbjct: 60 GWETCRKIRS---FSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRSNQHELIQ 126 >gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 238 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + + R D G+ + +A EK+ + + +++D + GV Sbjct: 3 KTILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQ-VWDAVILDLMLPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + V + + G GA+ +L KPF+ L ++ L + Q Sbjct: 62 LEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQ 121 Query: 122 KSKDENQFLDA 132 ++ +N +DA Sbjct: 122 EAMGQNLLMDA 132 >gi|254410095|ref|ZP_05023875.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183131|gb|EDX78115.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 372 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ VR+ L F V A C + + P+ ++ D M Sbjct: 9 MKKILIIEDEETVRENLMELLEAEDFEVCGAGDGCAGLDLVP-QYQPDLILCDVMMPKLD 67 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ P+ + +L D + G GA+ ++ KPF+ + L A+ Sbjct: 68 GFGVLNTLRKNPVTATIPFMFLTARTDKTDLRQGMELGADDYITKPFSVDELLNAIASRL 127 Query: 119 QMQKSKDENQ 128 Q Q +E Q Sbjct: 128 QKQAIIEEQQ 137 >gi|315607267|ref|ZP_07882267.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315250970|gb|EFU30959.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1302 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + F G+ V A + E E KE + +V D M + Sbjct: 1058 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERL-KEHTVSLIVSDWMMPVMDGA 1115 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F VR + + + L + D + G GA++++ KPF+ + L +R + M Sbjct: 1116 EFCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNMLDM 1175 Query: 121 QKSKDE 126 ++ + Sbjct: 1176 RRLLMQ 1181 >gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 217 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ +RKV + GF V EA+ EA E + + + +++D + Sbjct: 1 MK-ILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKF-QPSMYSVVILDVMLPQKD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ D V L + + I G GA+ +++KP + + + ++ + Sbjct: 59 GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115 Query: 119 QMQKSKDENQFL 130 + K N L Sbjct: 116 KRTKKPSSNDIL 127 >gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 236 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD +R + G+ +A + EA ++ + +++D M Sbjct: 5 KTILIVDDEKEIRDLVEIYLKSEGYATVKACNGEEALNIIREQN-IDLVILDVMMPKLNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +R+ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 IDTCLKIREE---REMPIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 223 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 227 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLVD +R+ + D GF V A++ E ++ +P+ ++ D M + Sbjct: 5 LLLVDDEPGLREAVQAYLEDSGFTVDVASNAKAGWELL-QQRIPDLVISDIMMPEVDGYQ 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+A +R+ P + + +L + I G AG +++L KPF+ + L + L + Sbjct: 64 FLAQLREDPRFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLLTRK 123 Query: 122 KSKDEN 127 ++KD N Sbjct: 124 EAKDAN 129 >gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158] gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158] Length = 286 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E+ + L++D + GV Sbjct: 52 KRILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGW-DALILDLMLPGVDG 110 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 111 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 170 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 171 DALARDSRIDA 181 >gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472] gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472] Length = 243 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +R++ G++V + + P+ +V+D M G Sbjct: 4 NKILVVDDDAKLRELLTRYLTQQGYIVETLPDPKD-LDRKLARNRPDLIVLDVMMPGEDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + V L + I G GA+ +L KPFN L ++ + + Sbjct: 63 LAVVRRLRAQGETLPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRRH 122 Query: 122 KS 123 + Sbjct: 123 HA 124 >gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation) [Geobacillus kaustophilus HTA426] gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 235 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA E P +++D + + Sbjct: 3 RKILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASE-QPALIILDLMLPKLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 VDVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRRT 121 Query: 122 K 122 + Sbjct: 122 E 122 >gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 230 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ VF A++ EA KE+ P+ +++D M + Sbjct: 6 QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQA-KEVNPDLIILDVMMPQMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R MP F+ +L + IAG GA+ ++ KP L + + + Sbjct: 65 IEACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILR 124 Query: 120 MQKSKDE 126 ++DE Sbjct: 125 RNTAEDE 131 >gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + R F G+ V A E + +++D + G+ Sbjct: 1 MPKILIVEDDEALARGLRDNFACEGYEVAYAADGDTGLELLLDGGA-DIVLLDVMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + + L + ++ G GA+ +++KPF+ L +R + Sbjct: 60 GYSICEAARREGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIARVRAFLRR 119 Query: 121 QKSKDE 126 +S+DE Sbjct: 120 HRSEDE 125 >gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] Length = 225 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ R G+ V EA EA + +E + L++D M + Sbjct: 5 KILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEKDISLLILDVMMPRMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREIRESSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILRR 121 Query: 121 QKSKDENQFLDA 132 D ++A Sbjct: 122 TLGSDAGDVMEA 133 >gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 1307 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R R + D + V + A + + P+ ++ D M G+ F Sbjct: 655 RILLADDNADMRMYVRRIL-DARWTVEAVSDGAAALDVARRSP-PDLVIADVMMPGLDGF 712 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P+ V V L E + G AGA+ +L+KPF+ L + Q+ Sbjct: 713 GLLRALRADPVTRCVPVIMLSARAGEESRVEGLAAGADDYLVKPFSARELIARVATHLQL 772 Query: 121 QKSKDENQF 129 + + + Sbjct: 773 GEHRRAAER 781 Score = 97.2 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 3/117 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ G+ A A E E P+ ++D + + Sbjct: 1185 RRILLVDDNLDAVELLAESLGAMGYTTRVAPDGPSALRIAE-EFAPDVALLDIGLPVMDG 1243 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R+ P G V + + AG + L+KP E L + E Sbjct: 1244 YELARRLREQPAGERVRLIAITGYGQEADFRRSEGAGFETHLVKPIQIERLTSLLEE 1300 >gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] Length = 230 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + L GF A A E+ + + +++D + G+ Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDV-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRA---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QMQKSKDE 126 + E Sbjct: 117 RRGGEAAE 124 >gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 250 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 10/129 (7%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC------EKELLPNYLVIDES 55 + +L+V+ ++R++ + G+ V A A ++E + L++D Sbjct: 19 NRILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLM 78 Query: 56 ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + L+ +R G + + L + + G GA+ +L KPF+ L Sbjct: 79 LPQVNGLDLCRLIR--YKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIAR 136 Query: 114 MRELPQMQK 122 R L + + Sbjct: 137 CRALLRRHR 145 >gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 246 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++++ D + V R G V+ A + EA KE P+ LV+D M L Sbjct: 4 NIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLW-KEHRPDLLVLDLMMPKVDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ D + L + + G GA+ ++ KPF+ L + + + Sbjct: 63 EVCDLIRQ---TDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRR 119 Query: 121 QKSKDE 126 + E Sbjct: 120 AGWRSE 125 >gi|206968529|ref|ZP_03229485.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206737449|gb|EDZ54596.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 225 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLMLYLTPIGYNCVCATSGEEAILHIE-NRNFKFILLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580] gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2] gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580] gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2] Length = 240 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ G+ V A +E P+ +V+D + + Sbjct: 3 KKILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEK-PDLIVLDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ L + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKELRQKKLMY--PILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILR 119 Query: 120 MQK 122 + Sbjct: 120 RTQ 122 >gi|330447113|ref|ZP_08310763.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491304|dbj|GAA05260.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 230 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + + GF V EA + + E + + +++D M + Sbjct: 1 MAKILLVDDDVELTALLKDILELEGFDVVEANNGQQGLEKVDSS--IDLILLDVMMPVMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V L + D I G GA+ +L KPF+ L MR + + Sbjct: 59 G-TEMLRRLRESHTTPVMMLTAKGDEIDRILGLELGADDYLPKPFSDRELLARMRAVLRR 117 Query: 121 QK 122 + Sbjct: 118 TQ 119 >gi|309790814|ref|ZP_07685358.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227101|gb|EFO80785.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 406 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD S I K G+ + EAT A E E LP+ L++D M Sbjct: 3 QRILVVDDSPINIKAVALALEAIGYEILEATDGRMALEVA-AETLPDMLILDVQMPEFDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ P + L + + G AGA+ ++ KPF E L+ ++ L + Sbjct: 62 YEVCRRLRRQPAFMTRPILMLSANNALHERVQGLEAGADDYMAKPFEAEELQARVKALLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|317052668|ref|YP_004113784.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316947752|gb|ADU67228.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 366 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ ++R L + V +A E + + ++ D M + Sbjct: 1 MRRILLIEDDPVLRHNMVELLTLENYDVDDAQDGEEGVRKALESHH-DLVLCDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + +L +VD E + G GA+ ++ KP E L A+ Sbjct: 60 GYQVFEALKSHPRTASIPFLFLTAKVDKEDVRRGMVMGADDYIQKPAPIEELLQAIEVRL 119 Query: 119 QMQKSK--DENQFLDAI 133 + ++ + E Q +A+ Sbjct: 120 RKKRLQLEQEQQRSEAL 136 >gi|254413389|ref|ZP_05027160.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180009|gb|EDX75002.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 403 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + GF +F A A + E P+ +++D M G+ F Sbjct: 10 KLLIVDDQPHNLGILFDFLTRSGFKIFVALDGESALQRTEV-TEPDLIILDVMMPGIDGF 68 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q P D+ + ++ D + G + GA ++ KP ++E + ++ ++ Sbjct: 69 ETCKRLKQNPSTQDIPIIFMTALSDTVDKVQGFKLGAVDYITKPIHQEEVLSRIQTHIKL 128 Query: 121 QKSKDENQ 128 +++ Q Sbjct: 129 YHLQNQLQ 136 >gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC3088] gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC3088] Length = 233 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +L+V+ +R + R EA ++ +A + P+ +++D + G Sbjct: 1 MKNCSVLVVEDEVAIRDMLRMALEIADLRCIEADNIMDAHAIII-DRRPDIVLLDWMLPG 59 Query: 59 V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E + +++ L ++ V L + + +I G GA+ ++ KPF L +R Sbjct: 60 GSGIELLRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRA 119 Query: 117 LPQMQKSKDENQFLDA 132 L + + ++ ++A Sbjct: 120 LLRRSGAMPSSERIEA 135 >gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str. Sunitezuoqi] Length = 232 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 5/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + L G+ V A E + + L++D + G L Sbjct: 2 RILLVDDEVELTEPLSRLLTREGYTVDAAYDGTSGNEHAQTGSY-DLLILDWMLPGKTGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ G V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 61 EICQQLRRQ--GKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118 Query: 121 QKSK 124 S+ Sbjct: 119 SGSQ 122 >gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 231 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ ++++ GF A EA + V+D M + Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSH-QIDLAVVDVMMPVMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F V+++ + + V +L D + I G G + +L KPF++ L ++ + + Sbjct: 60 GF-DFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRR 118 Query: 121 QKSKDEN 127 ++ N Sbjct: 119 TYQRNRN 125 >gi|332527152|ref|ZP_08403227.1| response regulator receiver modulated metal dependent phosphohydrolase [Rubrivivax benzoatilyticus JA2] gi|332111578|gb|EGJ11560.1| response regulator receiver modulated metal dependent phosphohydrolase [Rubrivivax benzoatilyticus JA2] Length = 392 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD K+ + D G+ V A++ A E+ LP+ +++D M + Sbjct: 13 TILIVDDEPANLKILATILGDKGYRVIAASNGETALRLAERPPLPSLILLDVMMPDMSGM 72 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ P + V + G +AGA+ ++ KPF+ L +R Sbjct: 73 VVLEKLRENPATRAIPVVMVTALGKERDEETGLKAGASDYIKKPFSPLILLARVRSQLDA 132 Query: 121 QK----SKDENQF 129 + +DE Q Sbjct: 133 ARLRGLLRDELQR 145 >gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 225 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L++D ++ K + G+ V A E E K + +++D + + Sbjct: 1 MENILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKI-KNGNYDLVILDLMLPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ +++ + L + + I G GA+ +L KPFN L +R L + Sbjct: 60 GLTLC-KEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRR 118 >gi|307718269|ref|YP_003873801.1| two-component regulatory system response regulator [Spirochaeta thermophila DSM 6192] gi|306531994|gb|ADN01528.1| two-component regulatory system response regulator [Spirochaeta thermophila DSM 6192] Length = 431 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + ++V A S EA EK + +++D M + F Sbjct: 10 RILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTP-FDLILLDIMMPEMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR P D+ + +L + D E ++ G G +++KP++ L ++ + Sbjct: 68 EVCRRVRSNPKTKDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQLSL 127 Query: 121 QKSKDENQFLD 131 ++ + + + L Sbjct: 128 REQQKKIEELS 138 >gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 226 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+V+ + GF V A ++ + +++D + G Sbjct: 1 MTRLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGA-DLILLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + V V L + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRTLRAR---STVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRRVETEE 124 >gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 222 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD R G+MV AT+ EA E EK P+ +V D +M + F Sbjct: 4 TLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKH-QPHLIVTDIAMPEMDGF 62 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR P + V +L E+ I G + G +++L KPF + L +R L + Sbjct: 63 ELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELDELGVVIRALLER 122 Query: 121 QKSKD 125 + + Sbjct: 123 SQLIE 127 >gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 846 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLVD I R+V + D GF V A++ EA E ++ + + +++D M G+ Sbjct: 729 VLLVDDEPINREVAAEILEDAGFDVTLASNGMEALERLQRHPV-DLVIMDIQMPGMDGLT 787 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQMP + + + E AG N+F+ KP + E L + Sbjct: 788 TTRRIRQMPDRAHLPIIAMTANAFAEDETECLNAGMNAFIPKPIDPERLYRIVLSCLDR 846 >gi|169630331|ref|YP_001703980.1| transcriptional regulatory protein KdpE [Mycobacterium abscessus ATCC 19977] gi|169242298|emb|CAM63326.1| Probable transcriptional regulatory protein KdpE [Mycobacterium abscessus] Length = 224 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R + G+ V A+S A E P +++D + + Sbjct: 1 MTRVLVVDDEPQILRAMRINLSARGYEVVTASSGAGAL-RAAAETQPEVVILDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + TDV V L D + AGA+ ++ KPF + +R + Sbjct: 60 G-TEVLAGLRGWTDVPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRR 118 >gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] Length = 241 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA+ EA + +++D + + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNY-ACILLDLMLPEMDGIE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + D + L + + + G +GA+ +++KPF+ + ++ L + +S Sbjct: 64 VASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 124 KDENQ 128 + Q Sbjct: 123 ANSEQ 127 >gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD + ++ G+ V A + EA E + +++D + + Sbjct: 1 MSTILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMA-TTISLTCIILDLMLPDLS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + I G GA+ +L+KPF+ L +R + Sbjct: 60 GEEVCVQIRKESR---VPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVM 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|218886198|ref|YP_002435519.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757152|gb|ACL08051.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 391 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + L D + V A S +A P+ +++D M G+ Sbjct: 13 RTVLVVDDTVDNLTLLSDLLKDT-YRVKVANSGEKALRILSSGSPPDLVLLDIMMPGMDG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++++P DV V +L + + G GA ++ KP + + +R Q Sbjct: 72 YTVLRRLKELPGTADVPVIFLTALSEEDDERIGLELGAVDYITKPISPSIMLARVRTHLQ 131 Query: 120 MQKSK----DENQFLD 131 ++ ++ D+N+FL+ Sbjct: 132 VKAARDFLKDKNEFLE 147 >gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + + G+ V +A +A E P +++D +M G+ Sbjct: 1 MK-ILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAE-QPELVILDVNMPGLD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + V V L + + +I G GA+ +L KPF+ TL +R L Sbjct: 59 GFEVCRRIRAQSI---VPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALL 115 Query: 119 QMQKSKD 125 + + Sbjct: 116 RRVGGER 122 >gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1131 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 SLLL D + +R+ L + + A++ A E E P+ ++ D M + F Sbjct: 651 SLLLADDNRDMREYIERLLGSR-YRIRAASNGKRALEMA-TEDPPDLVLTDVMMPEMDGF 708 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R + + + L E I G + GA+ +L+KPF+ L + ++ Sbjct: 709 ELLAALRANSATSTIPIIVLSARAGEEAQIEGLQHGADDYLVKPFSARELVARVENNLRL 768 Query: 121 Q--KSKDENQFLDA 132 + + E + ++ Sbjct: 769 STFRRETEQRIRES 782 >gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V AT+ +A + +E P+ +++D M G+ F Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRA-REARPDAVILDVMMPGMDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 73 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 >gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 1514 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R + L D ++V A E +++ P+ L+ D M + Sbjct: 649 RILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQ-RPDLLLTDIMMPRLNGL 706 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R D+ + L E I G +A A+ +L+KPF+ L + +M Sbjct: 707 ALLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACLKM 766 Query: 121 QKSKDE 126 + + E Sbjct: 767 AQIRQE 772 >gi|119484770|ref|ZP_01619252.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106] gi|119457588|gb|EAW38712.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106] Length = 455 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + L G+ + A S EA + K P+ +++D M + F Sbjct: 8 ILIVDDEPANLILLEELLKSEGYEILLAASGIEALQLA-KTTSPDLVLLDVMMPEMDGFE 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V +L D + I G + ++ KPFN L + L Q+ Sbjct: 67 VCDSLRKDEQLKVTPVIFLTSLDDEQSQIKGLELMGDDYITKPFNSRLLLAKVSSLLQLN 126 Query: 122 KSKDENQFLDA 132 + + + +D+ Sbjct: 127 QMRTQTTQVDS 137 >gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 248 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ + GF V A + +A +E P+ +V+D + + Sbjct: 12 KILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTY-QEFDPDLVVLDVMLPDFDGY 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G+D+ V +L + D + G AGA+ ++ KPF+ E + ++ + + Sbjct: 71 EVLRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRRTT 130 Query: 123 SKDENQFL 130 +E+ L Sbjct: 131 PSEEDSAL 138 >gi|212703362|ref|ZP_03311490.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098] gi|212673208|gb|EEB33691.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098] Length = 234 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+LLV+ + + G+ + A + E + +V+D + G+ Sbjct: 5 SVLLVEDNEDILANLYAYLEPLGYELDCARNGRTGLEMA-ASGQFDLVVLDIMLPGLDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ G V V L + G AGA+ +L+KPF L +R L + Sbjct: 64 SLCRALRE-EHGVQVPVIMLTARDTVADRVLGLDAGADDYLVKPFALRELEARIRALLRR 122 Query: 121 QKSKDENQ 128 ++++ Q Sbjct: 123 GRAQESAQ 130 >gi|48374222|gb|AAT41921.1| putative chemotaxis protein [Fremyella diplosiphon Fd33] Length = 121 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+V+ S R++ L G V A+ EA E + P+ +V+D M + Sbjct: 1 MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQSTP-PDLVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1001] gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1001] Length = 233 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+++ + ++ G A + +A+ ++LP+ +++D + G + Sbjct: 4 SILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 269 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD V KV G+ V A+ EA + +E +P+ +V+D + + F Sbjct: 27 TILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHRE-IPDLVVLDVMLPKLDGF 85 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 86 AVCRRLRAESI---VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 142 >gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 232 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 8 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGVDLVVLDLGLPGMD 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + L D + G AGA+ ++ KPF L +R L + Sbjct: 67 GLEVARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 126 Query: 121 QKSKDEN 127 ++ + Sbjct: 127 GAAEPQQ 133 >gi|300867490|ref|ZP_07112141.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300334484|emb|CBN57309.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 611 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ + G+ V +A + A + ++P+ +++D M + Sbjct: 13 ILIVDDNPDNLRLLSKMLTKKGYHVRKALNGQMALTAAQA-VVPDLVLLDIMMPEMDGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H++ P ++ V +L D + G ++ KPF + ++ ++ Sbjct: 72 VCTHLKADPKTAEIPVIFLSALSDAFDKVKAFAVGGADYVAKPFQLAEVLARVQNQLALR 131 Query: 122 KSKDENQFLD 131 ++ E + L+ Sbjct: 132 AAELEKKQLN 141 >gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 224 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + + GF EA EA + + + +++D M Sbjct: 4 RTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPV-DAVLLDVMMPKQDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R +DV + +L + + G + G + +++KPF+ L + + + Sbjct: 63 FAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRV 121 Query: 122 KSKDEN 127 + EN Sbjct: 122 QRVREN 127 >gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 232 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ D +V + F++ GF A + EA E + P+ +V+D M + Sbjct: 7 ILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSDN-PDLIVLDMMMPEMNGVD 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+M ++V + L + + + GA+ ++ KPF+ + ++ + + Sbjct: 66 VCREIRRM---SNVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVLRR 121 >gi|300866841|ref|ZP_07111518.1| putative Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] gi|300335151|emb|CBN56678.1| putative Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] Length = 320 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 58/136 (42%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 ++L+VD + ++ + G++V ++ + A + ++ P+ +++D +M + Sbjct: 11 TNILIVDDNPDNLRLLSKILESQGYIVRKSLNGKMALQAAYRDP-PDLIILDINMPDMNG 69 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118 E +++ D+ + ++ + GA ++ KPF + + +R Sbjct: 70 YEVCQQLKESEATQDLPIIFISALDRVNDKVRAFEMGAVDYITKPFQEQEVLMRVRNQLL 129 Query: 119 ---QMQKSKDENQFLD 131 Q + +NQ L+ Sbjct: 130 IQQQYHQLIKQNQLLE 145 >gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] Length = 241 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R++ + F + EA+ EA E + +++D + + Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDY-ACILLDLMLPEM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + D + L + + + G +GA+ +++KPF+ + ++ L + Sbjct: 60 DGIEMSSKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118 Query: 120 MQKSKDENQ 128 ++ Q Sbjct: 119 RTQTSKPEQ 127 >gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 229 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + GF A + +A ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKALRSRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|119492435|ref|ZP_01623756.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC 8106] gi|119453101|gb|EAW34270.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC 8106] Length = 377 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD ++ +D G+ V A + A + P+ +++D M G Sbjct: 12 NILIVDDLPDNLRLLSETLSDRGYEVQCAINGKLAL-MAVQNAPPDLILLDIKMPGLDGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A ++ +++ V +L D + R G ++ KPF E + + + Sbjct: 71 EVCAELKSQVSTSNIPVIFLSALDDVFDKVKAFRVGGVDYITKPFQVEEVLARVENQLTI 130 Query: 121 QKSKDEN 127 + + + Sbjct: 131 CRLQKQL 137 >gi|86607343|ref|YP_476106.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86555885|gb|ABD00843.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 121 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ S R++ L + GF V EA E ++ P+ +V+D M + Sbjct: 1 MSRVLVVEDSQSQREMIGKLLQENGFEVMTVEDGVEAVEAVKQNK-PDLIVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ PL + + + G R GA++++ KPF + L +++L Sbjct: 60 GYEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGLRQGADAYIAKPFQPQELVGTIKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 237 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ + D GF + A E+ + L++D + G+ Sbjct: 5 KRILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGW-DALILDLMLPGIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + G GA+ +L KPF+ L ++ L + Q Sbjct: 64 LEICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123 Query: 122 KSKDENQFLDA 132 ++ N LDA Sbjct: 124 EAMSRNLRLDA 134 >gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603] gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA E E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLE-EKRFDLIILDVMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + K Sbjct: 63 EACMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFK 121 Query: 123 SKDEN 127 + N Sbjct: 122 KYNTN 126 >gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 235 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + E E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVE-EYDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDE 126 + Sbjct: 121 DLTQK 125 >gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + + G+ V A + E ++ + L++D + L Sbjct: 2 RILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNY-DLLILDWMLPQQSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++R G V +L + + +AG AGA+ +L+KPF L +R L + Sbjct: 61 QICQYLR--DQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRR 118 >gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A + EA E E + +P+ ++ D M + Sbjct: 20 KRLLLIDDDPNLILLVKDYLEFRGYEVNTAENGREALEILE-QDIPDMIICDVMMPEMDG 78 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ VRQ + V +L + + G GA+ +++KPF E L + + Sbjct: 79 YTFVEQVRQNERTGWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 138 Query: 120 MQKSKDENQ 128 E+Q Sbjct: 139 QTTRWKEHQ 147 >gi|29350071|ref|NP_813574.1| two-component system sensor histidine kinase/response [Bacteroides thetaiotaomicron VPI-5482] gi|298384392|ref|ZP_06993952.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_14] gi|29341983|gb|AAO79768.1| two-component system sensor histidine kinase/response [Bacteroides thetaiotaomicron VPI-5482] gi|298262671|gb|EFI05535.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_14] Length = 1353 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R+ + D F EA + EA E + + + +V D M + Sbjct: 1104 TILIVEDNNEIRRYLSNGLADL-FNTLEAGNGEEALEKLKDNEV-DVIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 +V+Q + V L + D + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221 Query: 120 MQKSKDE 126 ++ D+ Sbjct: 1222 RRRMLDK 1228 >gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes] gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] Length = 240 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +V + L + + I G GA+ ++ KPF+ + ++ + + + Sbjct: 66 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 123 SKDE 126 K E Sbjct: 126 GKAE 129 >gi|291566271|dbj|BAI88543.1| adenylate cyclase [Arthrospira platensis NIES-39] Length = 438 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD + L G+ A S A E + P+ +++D M + F Sbjct: 8 ILLVDDEPANLVLLEDLLMAEGYNTTLAESGSRAIEIA-QNHRPDLVLLDVMMPDMNGFE 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ P+ + +L D E + G + + ++ KPFN + L ++ + ++ Sbjct: 67 VCDRLRENPILQTTPIIFLTALDDEESRLMGLQTMGDDYITKPFNIKLLLAKIQNILKLN 126 Query: 122 KSKD 125 K ++ Sbjct: 127 KMRN 130 >gi|237715359|ref|ZP_04545840.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405201|ref|ZP_06081751.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229444668|gb|EEO50459.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356076|gb|EEZ05166.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1384 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+++ + + ++ L + VF A + E E E + +V D M + Sbjct: 1129 SVLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENED-IDLIVSDVMMPEMDGI 1186 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +V+ + + V L + E GA++F+ KPFN L +R L + Sbjct: 1187 EFCKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLLKY 1246 Query: 121 QK 122 ++ Sbjct: 1247 KE 1248 >gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621] gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621] gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA E E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLE-EKRFDLIILDVMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + K Sbjct: 63 EACMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFK 121 Query: 123 SKDEN 127 + N Sbjct: 122 KYNTN 126 >gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 S+LLVD +R+ + F V A++ +A +F +K P+ ++ D M Sbjct: 6 SILLVDDEPGIRESVQAYLEYGDEFQVQVASNAHQAWDFLQKNP-PDLVISDIMMPEVDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +F+ +R+ + V +L I G AG ++++ KPF+ E L ++ L + Sbjct: 65 YQFLKKLRENQRYETIPVVFLTARGMTSDRIQGYNAGCDAYISKPFDPEELEAIVKNLLE 124 Query: 120 MQKSKDE 126 +K + Sbjct: 125 RRKVNSQ 131 >gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047] gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + + E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 DIVKKAE 127 >gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 227 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 9/136 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M L+VD ++ K + G+ V A EA + E + +++D + Sbjct: 1 MKIKALVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENY-DVVILDVMLPEY 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 LE VR+ ++V + L + D I G GA+ ++ KPFN L+ ++ + Sbjct: 60 TGLEVCQIVRE---FSNVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAV 116 Query: 118 PQM--QKSKDENQFLD 131 + Q+ + E + L+ Sbjct: 117 LRRSIQEKETEKKTLE 132 >gi|166368645|ref|YP_001660918.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166091018|dbj|BAG05726.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 378 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 8/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D +++ + VF A+ E + ++ P ++ D M G+ Sbjct: 1 MVRILVIDDDGVIQTFLSRALQKE-YEVFVASDGEEGLKQA-GQIKPAMIICDWMMPGID 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + F L + G AGA+ FL KP LR +R Sbjct: 59 GLEVCRQIKLNPQLSTTFFILLTSLGSVGDRVKGLDAGADDFLCKPIEINELRARVRAGM 118 Query: 119 QMQK----SKDENQFLD 131 ++ + + + Q L+ Sbjct: 119 RLHQLSHDLRAQKQLLE 135 >gi|126031093|pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D10a And D53e. gi|126031094|pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D10a And D53e Length = 127 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V++ +R++ + GF EA A E P+ ++++ + G Sbjct: 3 RRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLEWMLPGGSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI H+++ + D+ V L + E + G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] Length = 1111 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 5/128 (3%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ + + E E+E P L++D M G+ Sbjct: 709 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 767 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ S Sbjct: 768 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL--TAS 825 Query: 124 KDENQFLD 131 + E + ++ Sbjct: 826 QAEMRHME 833 >gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides DSM 12442] gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 15 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDY-DLILLDIMMPGKDGI 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + L + + + G G++ +++KPF+ + ++ + + Sbjct: 74 EVCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 130 >gi|220906186|ref|YP_002481497.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219862797|gb|ACL43136.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 406 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + I R + G V + + +A + E + + +++D M + L Sbjct: 175 KILVVDDTLINRDLLSRRLERQGHTVKLSENGQQALQLLESQS-FDLVLLDVIMPKMNGL 233 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + ++ P D+ V + + E + GA +L KPFN L+ ++ + Sbjct: 234 ELLRLMKDTPNWKDIPVIMISALDEVESAVRCIELGAEDYLTKPFNTILLKARIKACLEK 293 Query: 121 QKSKDENQF 129 + +D+ + Sbjct: 294 KYLRDQERQ 302 >gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 236 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 ++VD +R++ + G+ V A S EA E + P+ +++D + + F Sbjct: 1 MVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTK-PDMIILDVMLPDIDGFTV 59 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 R G V +L D + + G G + ++ KPF+ E + +R + + + + Sbjct: 60 TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 119 Query: 125 DEN 127 E+ Sbjct: 120 VED 122 >gi|166031344|ref|ZP_02234173.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC 27755] gi|166028749|gb|EDR47506.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC 27755] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + G V EA EA E +KE + + L++D M + Sbjct: 1 MAKILVCDDDKEIVEAIEIYLTQDGHQVLEAYDGIEAVEILKKESV-DLLIMDIMMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRATLKIREKH-NIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSHLRR 118 >gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ + +R+ + G+ V A EA +E + ++D M G Sbjct: 5 RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEAL-RISEESSFDLALLDIMMPGCNGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + L + + + G GA+ ++ KPF LR + + + Sbjct: 64 DVCRELRRRD--PALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRR 121 Query: 121 QK 122 + Sbjct: 122 SR 123 >gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803] gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA E E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLE-EKRFDLIILDVMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + K Sbjct: 63 EACMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFK 121 Query: 123 SKDEN 127 + N Sbjct: 122 KYNTN 126 >gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666] gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 245 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R + R GF V A A + +V+D M G Sbjct: 12 KILILDDDARIRDLLRRYLAQEGFEVILAEDSK-ALNRIMLRDAVDLIVLDLMMPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 71 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRR 129 >gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + +++ EA + A E + + +++D M G + Sbjct: 6 RILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDY-DLILLDIMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V L + + + G G++ +++KPF+ + ++ + + Sbjct: 65 EVCKGIREK---KATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 121 >gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5] Length = 233 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ F + +A E P +++D + G+ Sbjct: 5 QKILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYET-YHPGLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + L + + + G GA+ +++KPF+ + + +R + + Sbjct: 64 YQVCREIRAKSS---TPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLR 120 Query: 120 MQKSKDENQ 128 + + Sbjct: 121 RYQPVKPEE 129 >gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 8/126 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD R V R N G+ V A++ +A + +K + +++D + + Sbjct: 2 MVTVLIVDDEATFRDVLRFNLNRDGYDVLTASNGVQALDVYKKA---DVILLDLMLPEMS 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ V + + + + G GA+ ++ KP++ L +R + Sbjct: 59 GEDVCRKIRQHSS---VPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAIL 115 Query: 119 QMQKSK 124 + ++ Sbjct: 116 RRTGAE 121 >gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 277 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 42 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNW-DALILDLMLPGVDG 100 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 101 LEICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 160 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 161 DALARDSRVDA 171 >gi|319640566|ref|ZP_07995286.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A] gi|317387843|gb|EFV68702.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A] Length = 1350 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ R F D + V A E E + +PN +V D M + Sbjct: 1100 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQA-RIPNIIVSDIMMPVMDGIE 1157 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1158 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1217 Query: 122 K 122 K Sbjct: 1218 K 1218 >gi|254882381|ref|ZP_05255091.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254835174|gb|EET15483.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1344 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ R F D + V A E E + +PN +V D M + Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQA-RIPNIIVSDIMMPVMDGIE 1151 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211 Query: 122 K 122 K Sbjct: 1212 K 1212 >gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ +L GF V + +A ++ + +++D + G Sbjct: 1 MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGA-DLVLLDLQLPGQS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ + V V L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRQR---STVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116 Query: 119 QMQKSKDEN 127 + Q +E Sbjct: 117 RRQGEPEEL 125 >gi|145636091|ref|ZP_01791761.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittHH] gi|145270613|gb|EDK10546.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittHH] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ +R++ + + V EA+ A ++ P +++D + G Sbjct: 3 RKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN--PKLILLDWMLPGRSG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++FI ++++ + + L + E IA AGA+ ++ KPF+ + L + + + Sbjct: 61 IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120 Query: 120 MQKSKDEN 127 + Sbjct: 121 RIYEQQSQ 128 >gi|22299981|ref|NP_683228.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296166|dbj|BAC09990.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 163 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++++VD S +R + L + G+ V EA EA+E + + P+ +++D M + Sbjct: 44 MATIMVVDDSPTLRAMIVELMKEQGYDVVEAEDGIEAQEKIKAQC-PDLVILDVVMPRMN 102 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + V V + + + G + G ++++ KPF+ L ++++L Sbjct: 103 GYELCRWIKGEAVSQKVPVIMCTTKSEEFDIHWGKKQGVDAYITKPFDPAELVASVKQLL 162 >gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4] gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + L GF V A A E E E + +++D + G+ Sbjct: 1 MTRVLIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKRLRM---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 242 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ R D G+ + A E+ + LV+D + GV Sbjct: 5 KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNW-DALVLDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRT 123 Query: 122 KSKDENQFLDA 132 + N +++ Sbjct: 124 DALARNARMES 134 >gi|295085367|emb|CBK66890.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1263 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + + + +A +E P+ ++ D M + Sbjct: 999 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDLVISDIMMPEMSG 1056 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + M+ G GA++++ KPF+ L+ ++ L Sbjct: 1057 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLA 1116 Query: 120 MQKSKDE 126 + + Sbjct: 1117 NRALLRQ 1123 >gi|288959503|ref|YP_003449844.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288911811|dbj|BAI73300.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 253 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+VD +R + G+ V E + + + +V+D + G Sbjct: 7 LLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARV-DLIVLDLMLPGEDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V L + I G GA+ +L KPF+ L ++ + + Sbjct: 66 LCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKAVLRR 124 >gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Geobacillus thermodenitrificans NG80-2] gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LLLVD V + GF + A + EA + KE P+ +V+D + + + Sbjct: 4 TLLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKA-KETNPSLVVLDWMLPEMSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + V + + + + I G GA+ ++ KPF+ L +R + + Sbjct: 63 DVCRELRK---TSHVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRR 119 Query: 121 QKSKDENQFL 130 + +D + L Sbjct: 120 IEGQDNQEEL 129 >gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1] gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1] gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1] gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1] gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 242 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+VD + + + G+ V AT +A + +++D + + Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQS-FTCILLDLMLPKLD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 GMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRR 121 >gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] Length = 1128 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 5/128 (3%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 + D + +V G+ + + E E+E P L++D M G+ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 784 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + +R+ ++ + L E + G AGAN +L KPFN++ L ++ S Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL--TAS 842 Query: 124 KDENQFLD 131 + E + ++ Sbjct: 843 QAEMRHME 850 >gi|298490278|ref|YP_003720455.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298232196|gb|ADI63332.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 374 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L VD + + R L G+ + + A + + P+ +++D M G+ Sbjct: 11 RILAVDDTRDNLILVRTLLESEGYKIDLVSDGATALQKVAQSP-PDLILLDVMMPGMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + + + ++ G AGA+ F+ KPF+ + L +R L ++ Sbjct: 70 EVTRRIRNCPDLNYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLRL 128 Query: 121 QKSKDENQFL 130 + S DE Q + Sbjct: 129 KHSIDEQQKM 138 >gi|163753369|ref|ZP_02160493.1| two-component response regulator [Kordia algicida OT-1] gi|161327101|gb|EDP98426.1| two-component response regulator [Kordia algicida OT-1] Length = 227 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 7/136 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + + G+ + A++ EA +K + P+ +++D M Sbjct: 1 MKKKDIKILLVDDEPDILEIVGYNLSSEGYNLTTASNGVEAIAKAKK-IKPHLIIMDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++R+ + + +L + +AG AGA+ ++ KP + L + Sbjct: 60 PEMDGIEACENIRKDSSLANTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKV 119 Query: 115 RELPQMQKSKDENQFL 130 + L + KS+DEN + Sbjct: 120 KALLRRLKSEDENAQI 135 >gi|300726984|ref|ZP_07060404.1| putative histidine kinase [Prevotella bryantii B14] gi|299775707|gb|EFI72297.1| putative histidine kinase [Prevotella bryantii B14] Length = 1366 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 4/117 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +LLVD S R+ R +D + V EA + A E E P+ ++ D M + Sbjct: 1112 VLLVDDSDDFREFMREELSDH-YEVVEAENGKVALEKI-AEHRPHIILSDVMMPVMDGNE 1169 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ P ++ V L + + I G GA+ ++ KPF+ + LR M L Sbjct: 1170 FCRLLKGNPATANIPVIMLTARLTMLQKIEGLEHGADDYITKPFSMDLLRLRMANLM 1226 >gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] Length = 237 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++ ++ +D G+ V A E+ + L++D + GV Sbjct: 4 KRILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGW-DALILDLMLPGVDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR M + + + G GA+ +L KPF+ L ++ L + Sbjct: 63 LDICRRVRAM--TRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFR 120 Query: 120 MQKSKDENQFLDA 132 Q++ N L+A Sbjct: 121 RQEAMGRNLMLEA 133 >gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 235 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + L GF A A E + +++D + G+ Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAAND-IDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|153838150|ref|ZP_01990817.1| two component transcriptional regulator, winged helix family [Vibrio parahaemolyticus AQ3810] gi|149748466|gb|EDM59325.1| two component transcriptional regulator, winged helix family [Vibrio parahaemolyticus AQ3810] Length = 226 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ GF V A + + P+ +++D M G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHH-PDLIILDIMMPGDDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D+ + L + +AG GA+ ++ K F+ L ++ + + Sbjct: 63 FTLCQKLRKN---SDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119 Query: 120 MQKSKD 125 +S Sbjct: 120 RSQSTA 125 >gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117 Query: 119 QMQKSKDE 126 + + DE Sbjct: 118 RRIEVHDE 125 >gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM] gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC 4796] gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM] gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC 4796] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + + E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 DIVKKAE 127 >gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR Length = 214 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + + V + + + +++D + Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYY-DLIILDLMLPSIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + D +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPQKD 123 >gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLE-EKKFDLIILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM B1551] gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM B1551] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 LLLVD +R++ + G+++ EA EA E + + +V+D M G Sbjct: 5 QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKAL-HIDYDLIVLDLMMPGIDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + L + + + G G + +++KPF+ + ++ L + Sbjct: 64 IEVCKQIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|294645151|ref|ZP_06722874.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294807005|ref|ZP_06765824.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292639482|gb|EFF57777.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294445704|gb|EFG14352.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1397 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+++ + + ++ L + VF A + E E E + +V D M + Sbjct: 1142 SVLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENED-IDLIVSDVMMPEMDGI 1199 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +V+ + + V L + E GA++F+ KPFN L +R L + Sbjct: 1200 EFCKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLLKY 1259 Query: 121 QK 122 ++ Sbjct: 1260 KE 1261 >gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R V R GF V +A A + ++ P+ +++D + G+ Sbjct: 1 MRKVLVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDP-PDLVLLDVMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D +V + + + G GA+ ++ KPF+ + ++ + + Sbjct: 60 GL-EVLRRLRAVSDAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLRR 118 Query: 121 QK 122 + Sbjct: 119 DR 120 >gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] Length = 237 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T++ + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCKKLR---DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 234 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 13/137 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD +R++ G+ V A +A E C P+ +++D + G + Sbjct: 5 TILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALE-CAFSFNPDLVILDMMIPGLDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + +L + G AG + ++ KPF+ L ++ + Sbjct: 64 EVCQALRKNLS---TPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRR 120 Query: 121 QKSKD-------ENQFL 130 + + +N+ L Sbjct: 121 NRILENSNYSNAQNKRL 137 >gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 7/133 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +++ + G+ V A A + +E P +++D + G+ F Sbjct: 4 KILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLA-REFQPEIILLDVMLPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + V L + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 ELCRRLRQEM---NTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRR 119 Query: 121 QKS-KDENQFLDA 132 + ++E Q + Sbjct: 120 VRMIREEMQKSEE 132 >gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612] gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612] Length = 233 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ + GF V A E ++ P+ +++D + G Sbjct: 1 MKKILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIV-DIRPDLIILDLMLPGKD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR + + V L + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVL 119 Query: 119 QMQKS 123 + + Sbjct: 120 RRTEM 124 >gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium resistens DSM 45100] Length = 230 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + + L GF V A A + + + +++D + G+ Sbjct: 1 MTSVLIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQD-IDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRQ---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 1/123 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V V R G V + +A E+E P+ +V+D M G+ Sbjct: 11 VLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALATAEEEP-PDLVVLDLMMPGLDGIE 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + V L D +AG GA+ ++ KPF+ L +R + + Sbjct: 70 VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129 Query: 124 KDE 126 +D Sbjct: 130 QDR 132 >gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122] gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122] Length = 244 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ D +R++ R G+ V EA EA + + +++D M + + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGG-IDLVLLDIMMPRIDGY- 68 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + + V + + I G GA+ +L KPFN +R + Sbjct: 69 QVLRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRR 125 >gi|218245687|ref|YP_002371058.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|257058734|ref|YP_003136622.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802] gi|218166165|gb|ACK64902.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|256588900|gb|ACU99786.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802] Length = 593 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD ++ + G+ V S A + + P+ +++D M + Sbjct: 12 NILIVDDKPTNLRILSTMLTKQGYKVRAVVSGKMAITAAQNQP-PDLILLDIKMPELDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V +L D + +AG ++ KPF E + + + Sbjct: 71 RVCELLQAEEKTRHIPVIFLSALQDGGDKMKAFQAGGVDYITKPFQFEEVLARVSTHLAL 130 Query: 121 QKSKDENQFLDA 132 Q ++ E + L+A Sbjct: 131 QATRRELRQLNA 142 >gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 277 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 43 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNW-DALILDLMLPGVDG 101 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 102 LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 161 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 162 DALARDSRIDA 172 >gi|160884768|ref|ZP_02065771.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483] gi|156109803|gb|EDO11548.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483] Length = 1320 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++LLVD + + + F + AT+ EA +++ + +V D M Sbjct: 1069 KTILLVDDNPEILNYLKKELGKS-FNILTATNGKEALGMLQQQN-ISLVVSDVMMPEIDG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + + L + + G +AGA+ +++KPF TL+ ++ + Sbjct: 1127 IELCKRIKTDHNLSHLPIILLTAKAMNLYIEEGFQAGADDYIVKPFKVSTLKIRIKNILN 1186 Query: 120 MQKSKDE 126 Q+ + Sbjct: 1187 RQEKMKK 1193 >gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Rv] gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Ra] gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis F11] gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis H37Ra] gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 94_M4241A] gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis GM 1503] gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210] gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207] gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506] gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475] gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium tuberculosis H37Ra] gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis F11] gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis CDC1551A] gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis W-148] gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 4207] Length = 230 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA + P+ LV+D M + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMI-ASDRPDALVLDVMMPRLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L MR L + K Sbjct: 63 EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 123 SKDENQFLD 131 +D + + Sbjct: 123 PEDAAESMA 131 >gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 226 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R++ + + G V EA+ EA E ++ + +V+D M + Sbjct: 1 MAKILVVDDDPNIRELIKVFLEEAGMEEVMEASDGVEALSVME-QVSVDLVVMDIMMPNM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ + V L + + +++ G G + +L+KPF L ++ L Sbjct: 60 DGWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKAL 116 Query: 118 PQMQK 122 + + Sbjct: 117 LKRYQ 121 >gi|299146270|ref|ZP_07039338.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298516761|gb|EFI40642.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1411 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + +R + + + V EA + +A E KE P+ +V D M G+ Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKE-FPDLVVTDIMMPGIDG 1207 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A ++ + V L + G +GA+ +++KPFN + L + L Sbjct: 1208 LELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLA 1267 Query: 120 MQKSKD 125 ++ Sbjct: 1268 QREKLK 1273 >gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ F AT EA KE PN +++D + G+ F Sbjct: 5 KILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIA-KEEKPNLILLDLMIPGMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 DVCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 >gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MVDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + + Q Sbjct: 117 RRTNQRTQIQ 126 >gi|160883701|ref|ZP_02064704.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483] gi|156110786|gb|EDO12531.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483] Length = 1411 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + +R + + + V EA + +A E KE P+ +V D M G+ Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKE-FPDLVVTDIMMPGIDG 1207 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A ++ + V L + G +GA+ +++KPFN + L + L Sbjct: 1208 LELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLA 1267 Query: 120 MQKSKD 125 ++ Sbjct: 1268 QREKLK 1273 >gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905] gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905] Length = 233 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 60/135 (44%), Gaps = 7/135 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L +D + + GF +S+ +A + E+E + + +++D M + Sbjct: 1 MKTILCIDDEPRMLDLLTLYLEP-GFQCRAMSSIQDALIYLEEEHV-DLVLLDIMMPEMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ V + L + + ++ G GA+ ++LKPF+ E L + + Sbjct: 59 GFQVCEEIRK---FWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVL 115 Query: 119 QMQKSKDENQFLDAI 133 + K +D+ + + Sbjct: 116 RRTKIEDKVVVFEGL 130 >gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA + P+ L++D M + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAI-TNNRPDALILDVMMPRLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D+ + L + +AG AGA+ +L KPF E L MR L + Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 277 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 43 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGW-DALILDLMLPGVDG 101 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 102 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 161 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 162 DALARDSRIDA 172 >gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 230 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R++ + G+ + A +A + P +++D + G+ F Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALS-VYRLFKPALVILDVMIPGIDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L + G AGA+ +L KPF + L MR L + Sbjct: 64 ELCRLIRAESS---VPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRR 120 Query: 121 QKSKDEN 127 + + Sbjct: 121 SQMLNSQ 127 >gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 4/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + +FG V+ A E +K L++D M + Sbjct: 1 MAKILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKND-FQLLILDIIMPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 RQ V L E +++G AGA+ +L+KPF+ + L ++ L Sbjct: 60 GLQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALL 118 Query: 119 QMQKSKD 125 + ++ Sbjct: 119 RRSGNES 125 >gi|78221238|ref|YP_382985.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78192493|gb|ABB30260.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 508 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + D G+ A EA E +E + +++D M + Sbjct: 5 KILIVDDEADIALILKLQLEDAGYRTTRARDGLEALEMLAREHY-DLILLDIRMPRLDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R ++ V + + + + GA ++ KPF+ + ++ + + + Sbjct: 64 EVLERIRQEWPELVVVMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIEYNR 123 Query: 123 SKDENQFLD 131 ++ EN+ L Sbjct: 124 TRLENERLQ 132 >gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 233 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++ L+ D + + G+ V +A EA E + + L++D M Sbjct: 1 MKTISILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQP-IDLLILDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R+ ++ + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRRIRE---THNMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51] gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ R GF V +T E + + +++D + G+ Sbjct: 1 MKRILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGL-RAIQNNEFDLIILDIMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ M D+ V + + + I G GA+ ++ KPF+ L ++ + Sbjct: 60 GL-EILKSMKEDKDIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIEN 118 Query: 121 QKSKDE 126 + E Sbjct: 119 YERLKE 124 >gi|308274678|emb|CBX31277.1| hypothetical protein N47_E47890 [uncultured Desulfobacterium sp.] Length = 1155 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ D ++R + + F V A S EA + + + + +++D M G+ Sbjct: 192 ILVADDELVMRDSLKEWLTEERFSVDMAASGSEALDMLKAKPY-DLMLLDIMMPGMDGVE 250 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + D+ V + E + + GA +L+KPFN + L + + Q Sbjct: 251 VLQKAKENFADLNVIMMTAYATVETAVEAMKKGAMDYLVKPFNPDALTPMILRIFQDADG 310 Query: 124 KDENQFLDA 132 +++ ++A Sbjct: 311 VSQDRQIEA 319 >gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] Length = 239 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V A S +A E +E P+ +V+D + G+ F Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRE-RPSLIVLDLMLPGMSGF 68 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R +V V L + I G GA+ +L KPF+ L + + + Sbjct: 69 DVLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRR 128 Query: 121 QKS 123 S Sbjct: 129 TGS 131 >gi|148658022|ref|YP_001278227.1| response regulator receiver modulated diguanylate cyclase [Roseiflexus sp. RS-1] gi|148570132|gb|ABQ92277.1| response regulator receiver modulated diguanylate cyclase [Roseiflexus sp. RS-1] Length = 443 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D VR++ + G+ V + + +E +P+ ++ID M + Sbjct: 3 KRILIADDEPAVRQLLELVLRSQGYEVVATQNGDQ-LVRTAQEWIPDLVIIDLMMPQMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +R V + L E ++ G GA+ ++ KPFN L +R + Sbjct: 62 YEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYVTKPFNIPELLARIRAHLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649] gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649] Length = 226 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +L G+ V A + +A + + +++D + G+ Sbjct: 1 MTRILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGA-DLVLLDLMLPGLS 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ ++V V L + + G GA+ ++ KP++ L ++ + Sbjct: 60 GVDVCRALRQR---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVL 116 Query: 119 QMQKSKDEN 127 + +E Sbjct: 117 RRLSEPEEL 125 >gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + GF V EA EA + L++D M + Sbjct: 5 KILIVDDESRMRKLVKDFLERDGFTVLEAGDGLEAMDVFYDNKDIALLILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VRQ+ + V + L D + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREVRQV---SQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 + +DA Sbjct: 122 TNVLFSEESIDA 133 >gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 227 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + ++ R GF V +A ++ P+ +++D + + Sbjct: 1 MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQF-QQRKPSLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQF 129 + + K E + Sbjct: 117 RRLERKAEPEQ 127 >gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 224 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + V + + V A + + E + +++D + + Sbjct: 2 RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEA-FPYDLILLDVMLPKLDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L + E + G GA+ +++KPF+ L +R L + Sbjct: 61 SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRR 118 >gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] Length = 255 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D +R+V + G V+EA +A + KE + +++D M + Sbjct: 33 MYKILVADDEQKIREVIKEYAEYEGHTVYEAVDGMQAVDMA-KEQDFDIIIMDVMMPRLD 91 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L + + G G + +++KPF+ + + + + Sbjct: 92 GFSACKEIRK---FKNTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAII 148 Query: 119 QMQKSKDE 126 + KS +E Sbjct: 149 KRNKSGNE 156 >gi|254227379|ref|ZP_04920811.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262396356|ref|YP_003288209.1| putative two-component response regulator [Vibrio sp. Ex25] gi|151939991|gb|EDN58817.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262339950|gb|ACY53744.1| putative two-component response regulator [Vibrio sp. Ex25] Length = 235 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R+ GF V A + + P+ +++D M G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHH-PDLIILDIMMPGEDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +DV + L + +AG GA+ ++ K F+ L ++ + + Sbjct: 63 FTLCQKLRKN---SDVPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119 Query: 120 MQK 122 + Sbjct: 120 RSQ 122 >gi|302343346|ref|YP_003807875.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301639959|gb|ADK85281.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfarculus baarsii DSM 2075] Length = 449 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 5/134 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M+ +L+VD V L G+ V A + A + E P+ ++ D M + Sbjct: 1 MNRILVVDDEKNYLVVLEALLRGEGYDVRTADNGQAALRLAD-EDEPDLVITDMKMPRMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E I +R D+ V + E + + GA +++KPF L + Sbjct: 60 GIELIQALRVD--HPDLPVIVMTAYGTVENAVEAMKLGATDYIIKPFENRELLLTTEKTL 117 Query: 119 QMQKSKDENQFLDA 132 +M++ +N+ L Sbjct: 118 RMRRLMTQNRLLRE 131 >gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22] gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces scabiei 87.22] Length = 241 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 17 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGIDLVVLDLGLPGMD 75 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 76 GLEVARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 135 >gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 223 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ + ++ GF V A E + + +++D + + Sbjct: 1 MKEKILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSY-DLIILDLMLPKM 59 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R+ ++V + L + + + G GA+ ++ KPF+ E L ++ L Sbjct: 60 NGIEVCKRIRE---FSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKAL 116 Query: 118 PQMQKSKDENQ 128 + K ++ + Sbjct: 117 IRRTKKRNNQE 127 >gi|189460890|ref|ZP_03009675.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136] gi|189432464|gb|EDV01449.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136] Length = 1318 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLE- 61 LL+VD + R + + V A++ EA + + E +P+ +V D M + Sbjct: 1070 LLIVDDNDDFRLFMEYSLGLQ-YRVKLASNGKEAWDILQNSEEMPDLVVSDIMMPEMDGN 1128 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V L + + E + G GA+ ++ KPFN L +R+L ++ Sbjct: 1129 ELCRLIKEDKRTAHIPVILLSAKQNTESKVEGLTMGADDYVTKPFNMTILVLRIRKLIEL 1188 Query: 121 QK 122 + Sbjct: 1189 SR 1190 >gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 245 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ ++ + + F GF V A E +++ P+ +++D + G+ Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMV-RQVRPDLIILDVMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + T + + L D IAG GA +++KPF+ L +R + + Sbjct: 60 GFSVC-RAVAKETAIPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRW 118 Query: 121 QKSKDE 126 + + + Sbjct: 119 NERQRQ 124 >gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3] gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E ++++D M + Sbjct: 1 MVDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + +I G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|254446246|ref|ZP_05059722.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198260554|gb|EDY84862.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 378 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 13/144 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD I ++ + G V AT+ + + E P+ +++D M G+ Sbjct: 15 RTVLVVDDEPINIQLLQRKLEWDGITVLTATNGEACLKVAKAE-RPDLILLDVMMPGMDG 73 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118 F A +R+ + V ++ + + G AGA ++ KP + + +R Sbjct: 74 FAVCAKLREDKRTKAIPVIFVTAHNSKKGKLEGLEAGAVDYITKPIDLDETIARVRTQLS 133 Query: 119 ---------QMQKSKDENQFLDAI 133 ++ + E++ AI Sbjct: 134 YLAINKANIELTRRLGESRRSAAI 157 >gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895] gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895] Length = 290 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 5/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 57 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 115 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + + + I G GA+ ++ KPFN L +R + + Sbjct: 116 SICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 173 Query: 121 QKSK 124 Q ++ Sbjct: 174 QANE 177 >gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 2/133 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ V +A + EA +++D M + Sbjct: 1 MK-ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + + V L + D I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDENQFLDAI 133 + +N LD I Sbjct: 119 AEHNVKNNELDQI 131 >gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 236 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +R++ + G V A E RE + + + +++D + G L+ Sbjct: 7 ILIVDDDAEIRRLAGKFLREHGHKVTTAQDAREMREAMKAGPV-DLIILDIMLPGASGLD 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V + L I G GA+ +L KPFN L + + + Sbjct: 66 LCRDIR---RTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVLRRM 122 Query: 122 K 122 + Sbjct: 123 R 123 >gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 2/129 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLVD + ++ + + G+ A + E E +++++D + + Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHY-DFILLDIMLPQL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R G + + + D + GA+ ++ KPF+ L ++ + + Sbjct: 60 DGIEVCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILR 119 Query: 120 MQKSKDENQ 128 +D Q Sbjct: 120 RTDKEDNRQ 128 >gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 230 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R+V ++ EA + EA + K+ + + +++D + + Sbjct: 1 MKTILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQAV-DLVILDLMLPDME 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V + L +V I G AGA+ +++KPF+ + ++ + Sbjct: 60 GERVCQEIR---TFSSVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ] gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ] Length = 267 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + +D G+ V A + E + LV+D M G Sbjct: 30 RILVVDDEQDLRALLQRYLSDQGYAVR-ALDGGQHLERLLGRERFDVLVLDVMMPGEDGL 88 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + + L D I G GA+ +L KPFN L+ + L + Q+ Sbjct: 89 SLCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQR 148 Query: 123 S 123 Sbjct: 149 M 149 >gi|291326977|ref|ZP_06574149.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM 1131] gi|291312096|gb|EFE52549.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM 1131] Length = 249 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V A + + + + +V+D + G Sbjct: 16 KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRILTRESIHLIVLDLMLPGEDGL 74 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 75 SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 134 Query: 123 SK 124 ++ Sbjct: 135 NE 136 >gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD ++ K + V A EA E K + +++D + Sbjct: 1 MKKVLVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKI-KNNSYDIVLLDIMIPVYT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E VR+ ++V + L + + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GIEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAIL 116 Query: 119 QMQKSKDE 126 + K E Sbjct: 117 RRSGKKAE 124 >gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ VR G+ V A A P +V+D M + Sbjct: 2 RVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITA-WRPGAIVLDLLMPFMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + L I G AGA+ +L+KPF+ + L +R L + Sbjct: 61 TMCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRR 118 >gi|189426125|ref|YP_001953302.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189422384|gb|ACD96782.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 454 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 2/132 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D +R+V + + G+ V A S E +L P ++ D M G+ Sbjct: 4 TILIIDDDASLRRVLEYQLQEAGYEVATAASGEEGLARF-SDLAPQLVISDMQMPGMDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V + + + + GA ++ KPFNR+ L + + Sbjct: 63 QVLKTVKERSPETPVIIITAFGSVDVAVQAMKQGAYDYITKPFNRDELHLTVARALHLTS 122 Query: 123 SKDENQFL-DAI 133 EN+ L DA+ Sbjct: 123 LTRENRRLKDAL 134 >gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ ++ G+ V +A A + +++D M + Sbjct: 1 MK-ILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTIPDIDLIILDIMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + L + I G AGA+ ++ KPFN + ++ + + Sbjct: 60 GM-QVVKKLRKESQIPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118 Query: 121 QKSK 124 K Sbjct: 119 SNIK 122 >gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + G+ V EA EA + ++ +++D M + Sbjct: 5 KVLVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREIRE---TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRR 121 >gi|260768957|ref|ZP_05877891.1| response regulator [Vibrio furnissii CIP 102972] gi|260616987|gb|EEX42172.1| response regulator [Vibrio furnissii CIP 102972] Length = 241 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + GF V + ++ P+ +++D + G Sbjct: 4 THILVVDDDIEICELLDEYLSKSGFSVATVSDGRALAQYLTDHGYPDLVLLDVMLPGEDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ ++V + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 64 FTLCQKIRRD---SNVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120 Query: 120 MQKSKDE 126 + +E Sbjct: 121 RVQVNEE 127 >gi|229495757|ref|ZP_04389485.1| DNA-binding response regulator/sensor histidine kinase [Porphyromonas endodontalis ATCC 35406] gi|229317331|gb|EEN83236.1| DNA-binding response regulator/sensor histidine kinase [Porphyromonas endodontalis ATCC 35406] Length = 969 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+V+ + + + + + A + E E +EL+P+ ++ D M + Sbjct: 712 LLIVEDNRDIAAYIGSQLANH-YAISYAANGLEGLEKA-QELVPDLIITDLMMPEMDGLE 769 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+ + + + + + ++ E+ I G AGA+++L KPFN + LR + +L + + Sbjct: 770 LCRQVRKNEIISHIPIIVVTAKISEEERIKGIEAGADAYLAKPFNSDELRTRVEKLLEGR 829 Query: 122 KSKDE 126 + E Sbjct: 830 RLLQE 834 >gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E + ++++D M + Sbjct: 1 MVDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + +I G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|220908588|ref|YP_002483899.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7425] gi|219865199|gb|ACL45538.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7425] Length = 337 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD S + L GF V+ A S A E LP+ +++D M G+ F Sbjct: 10 TVLIVDDSPASLGILSDLLETAGFEVWVARSGISAIEKL-NHALPDLILLDVMMPGLDGF 68 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ + ++ D + G + G ++ KPF +E + +R ++ Sbjct: 69 ETCRRIKANEQLQDLPIIFMSSLSDTVDKVKGLQLGGVDYITKPFQQEEVLARIRVHLKL 128 Query: 121 QKSKDENQ 128 +K + Sbjct: 129 KKLTRALE 136 >gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ VR++ GF + V + + E +P+ +++D + + Sbjct: 4 NILLVEDDAAVREMLLLPLRRAGFEITGVADVAQGKAALL-ERVPDLILLDWMLPDVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +++ P DV + L + E + G GA+ ++ KPF+ L +R + + Sbjct: 63 DWARELKRDPFTRDVPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVLRR 122 >gi|319795506|ref|YP_004157146.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597969|gb|ADU39035.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 234 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++V+ + V + G+ A E P+ ++D + + Sbjct: 1 MTRIVVVEDEIDIASVVQDYLRHSGYETAHFADGQSALESIVAAP-PDLTLLDIMLPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L ++ + G GA+ ++ KPF+ L +R + + Sbjct: 60 GIEVLRRAREHTAH-PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRR 118 >gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273] gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272] gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271] gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803] gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803] gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271] gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273] Length = 230 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59 M +L+V+ I+R+ H F+ G+ V A + E+E + +++D + + Sbjct: 5 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 64 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L D + + G GA+ ++ KPF L + L Sbjct: 65 DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121 Query: 118 PQMQKSKDENQ 128 + + + Q Sbjct: 122 FKDTNQQVQYQ 132 >gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB [Phaeobacter gallaeciensis 2.10] gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB [Phaeobacter gallaeciensis 2.10] gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ R+V + GF V A EA +E +P+ +V+D M + Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVLRAEHGEEAL-LIVEEDMPDIIVLDWMMPNLSGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ ++ + L + + G GA+ +++KP++ L +R + Sbjct: 66 EVCRRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 Query: 121 QKSKDENQFLD 131 + L+ Sbjct: 126 VRPSTVGVRLE 136 >gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 242 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF +F A + E + + P+ ++ D M Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQT-IFPDLIISDVMMPRANGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G AG + ++ KPF+ + L ++ + Sbjct: 75 ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 Query: 121 Q-KSKDENQFLDAI 133 Q + E I Sbjct: 135 QERLLKEAARFADI 148 >gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 227 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ GF A +A + P +++D + G+ F Sbjct: 5 SILIVEDDDDIVELLAFNLQSAGFATETAKDGYDALTKARRTP-PAGIILDLMLPGLDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + L + I G GA+ +++KPF+ L +R + + Sbjct: 64 EVCKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123 Query: 121 QKSKDENQF 129 + E + Sbjct: 124 HAPEQERRQ 132 >gi|316933637|ref|YP_004108619.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315601351|gb|ADU43886.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 457 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A++ EA E C++ + +++D M + F Sbjct: 4 RILVVDDIPANVKLLEDRLSAEYFDVITASNGVEALEICQRAEC-DIVLLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 4/112 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + L + V T+ EA + +V + L Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112 + R + V + + + + + G G N +LL+P ++ L Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELMA 266 >gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 227 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+++ +A EA + E++ P+ +V+D M + Sbjct: 1 MTRILIVDDDRQIADLIEVYLKNDGYIIDKAGDGMEALKKLEQDP-PDLIVLDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +VR+ V + + + + I G GA+ +++KPFN L ++ L Sbjct: 60 GLEFCKYVRKN---NQVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 222 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ R + G+ + EA + +V+D + + Sbjct: 1 MAKILIVDDDPAIREILRAYLSHEGYELSEAADG---VSALALAPAADLVVLDLMLPEMD 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + L + E+ + G GA+ ++ KPF+ L +R L + Sbjct: 58 GLEVARHLRRDFPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLRR 117 Query: 121 QKSKDEN 127 D Sbjct: 118 SGIHDRL 124 >gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 239 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V+ AT+ +A + +E P+ +++D M G+ F Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-REARPDAVILDVMMPGMDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 73 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 >gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 7/128 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + D G+ V A EA + P+ +V+D M G+ Sbjct: 3 QTILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLKIN--PDLIVLDVMMPGMDG 60 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + +L + + + G G + +L+KPF+ + L+ + + Sbjct: 61 FALCELIRKS---ISCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLR 117 Query: 120 MQKSKDEN 127 ++ + N Sbjct: 118 REQRINSN 125 >gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 3 str. Tulya] gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ D G+ V EA E +E +P+ L++D + G + Sbjct: 6 RIAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 >gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 236 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + G++ +A + EA ++ + + +++D M + Sbjct: 5 KTILIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNV-DLVILDVMMPKLNG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 IDTCLKIREE-REMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRR 121 >gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] Length = 237 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + + N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNY-NLVILDIMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|281420578|ref|ZP_06251577.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella copri DSM 18205] gi|281405351|gb|EFB36031.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella copri DSM 18205] Length = 1349 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD +R+ + F + V+ A + +A EK + + ++ D M + F Sbjct: 1103 LIVDDDEDMRQFVKAHFEKM-YTVYTADNGKDALRKLEKHPV-SLIISDWMMPEMDGPEF 1160 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 VR+ + + L + D GA+ ++ KPF+ + L ++R+L +M++ Sbjct: 1161 CRRVRENSEYSHLPFVMLTAKTDDAAKTESMNCGADVYIEKPFSMKYLEASVRQLLEMRR 1220 Query: 123 SKD 125 Sbjct: 1221 LLR 1223 >gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] Length = 226 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + ++ + GF +A +E P+ +++D + G+ + Sbjct: 4 KILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAA-QEHDPDLILLDVMLPGMSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR+ + V + L D ++ G +GA+ ++ KPF + L +R + Sbjct: 63 DVCRTVRE---FSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRR 119 >gi|169632218|ref|YP_001705954.1| osmolarity response regulator [Acinetobacter baumannii SDF] gi|169794452|ref|YP_001712245.1| osmolarity response regulator [Acinetobacter baumannii AYE] gi|184159742|ref|YP_001848081.1| osmolarity response regulator [Acinetobacter baumannii ACICU] gi|213158975|ref|YP_002320973.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|215482041|ref|YP_002324223.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii AB307-0294] gi|260550801|ref|ZP_05825008.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260556885|ref|ZP_05829102.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|262280372|ref|ZP_06058156.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|293610675|ref|ZP_06692975.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|299768511|ref|YP_003730537.1| osmolarity response regulator [Acinetobacter sp. DR1] gi|301346029|ref|ZP_07226770.1| osmolarity response regulator [Acinetobacter baumannii AB056] gi|301512909|ref|ZP_07238146.1| osmolarity response regulator [Acinetobacter baumannii AB058] gi|301595102|ref|ZP_07240110.1| osmolarity response regulator [Acinetobacter baumannii AB059] gi|332850218|ref|ZP_08432581.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013150] gi|332868815|ref|ZP_08438420.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013113] gi|332874244|ref|ZP_08442164.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6014059] gi|169147379|emb|CAM85240.1| two-component response regulator [Acinetobacter baumannii AYE] gi|169151010|emb|CAO99647.1| two-component response regulator [Acinetobacter baumannii] gi|183211336|gb|ACC58734.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078590|gb|ABO13619.2| two-component response regulator [Acinetobacter baumannii ATCC 17978] gi|213058135|gb|ACJ43037.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|213986795|gb|ACJ57094.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii AB307-0294] gi|260406111|gb|EEW99596.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260409491|gb|EEX02792.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|262258150|gb|EEY76884.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|292827019|gb|EFF85384.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|298698599|gb|ADI89164.1| osmolarity response regulator [Acinetobacter sp. DR1] gi|322509655|gb|ADX05109.1| ompR [Acinetobacter baumannii 1656-2] gi|323519675|gb|ADX94056.1| osmolarity response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332730862|gb|EGJ62170.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013150] gi|332733129|gb|EGJ64327.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013113] gi|332737528|gb|EGJ68435.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6014059] Length = 254 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQ-MDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D + L IAG AGA+ +L KPFN L +R + + Q Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139 >gi|197117616|ref|YP_002138043.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197086976|gb|ACH38247.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] Length = 349 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + V A + +A +++ LP+ +++D M G+ Sbjct: 10 QKILIVDDTPANIEILYSILKGA-YDVLFAKNGGDAIRIVQQQ-LPDLILLDIMMPGMDG 67 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ PL + + ++ E G ++GA +L KP + + +R Q Sbjct: 68 YQVCRVLKADPLTAKIPIIFVTAMSKEEDEAMGLQSGAIDYLTKPISPPIVLARVRNHLQ 127 Query: 120 MQKSKDENQFLDA 132 ++++ D + L A Sbjct: 128 LKRNSDLLEQLTA 140 >gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 241 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +R++ + +++ EA A E + +++D + G +E Sbjct: 10 ILVVDDEERIRRLLKMYLERENYVIDEAGDGNVALEKALANDY-DVILLDLMLPGKDGIE 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + + + G G + +++KPF+ + ++ L + Sbjct: 69 VCKEIREH---KTTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 124 >gi|124006367|ref|ZP_01691201.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla marina ATCC 23134] gi|123988024|gb|EAY27695.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla marina ATCC 23134] Length = 490 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + K+ + G+ A A E + P+ +++D M G+ F Sbjct: 11 KILVVDDTPANIKLMVEHLSQEGYKTLVAEDGESAIEQV-AFVKPDLILLDVMMPGIDGF 69 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ D+ + ++ D E + GA ++ KP + + + + Sbjct: 70 ETCHRLKEDDSTKDIPIIFMTALSDTENKVKAFSMGAVDYVTKPIQHKEVLSRVSAHLTI 129 Query: 121 QKSKDENQ 128 +K + + Sbjct: 130 RKLQKSLE 137 >gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] Length = 477 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD K+ + + + + +A + A + P+ +++D M + Sbjct: 12 NILIVDDHPENLKILTQMLSQKNYKLRKAINGEMALNAAFSKP-PDLILLDIVMPEMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H+++ P+ +++ V ++ + + G ++ KPF + + ++ ++ Sbjct: 71 QVCQHIKENPITSEIPVIFISALDEAFNKVKAFEMGGVDYITKPFQIKEVLARVQLQLRL 130 Query: 121 ----QKSKDENQFLD 131 Q+ K++NQ L Sbjct: 131 QHQTQQLKEQNQKLQ 145 >gi|53712177|ref|YP_098169.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|52215042|dbj|BAD47635.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] Length = 1328 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ + VR+ R LF + V EA E E +P+ ++ D M Sbjct: 1080 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1137 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ + + L + + ++ G+ +GA+ +++KPFN E L+ + L Sbjct: 1138 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1197 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1198 QRERLKR 1204 >gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +LLV+ + + + G+ V A +E P+ V+D + G+ Sbjct: 1 MTTHILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLA-RESTPDLAVLDWMLPGL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R G + V L + +AG AGA+ +++KPF+ E L +R + Sbjct: 60 SGLEICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLR 119 Query: 120 MQKSKDEN 127 + DE+ Sbjct: 120 RTQETDED 127 >gi|328861007|gb|EGG10111.1| hypothetical protein MELLADRAFT_115552 [Melampsora larici-populina 98AG31] Length = 2085 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ D + +R R + + + + V EA+ EA + + P+ +V D M Sbjct: 1256 TILIADDNDDMRSFVRSVLSRY-YTVAEASDGLEAYHWAKAHH-PDLVVSDVMMPALNGF 1313 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + ++ P + V L E I G GA+ +L+KPF + L + Q+ Sbjct: 1314 ELLKRLKTDPDTAGISVILLSAHAGSEIRIEGLAEGADDYLVKPFEAKELVARINTHLQL 1373 Query: 121 QKSKDENQ 128 K + + Sbjct: 1374 SKMRQRLE 1381 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 13/130 (10%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-------PNYLVIDE 54 +L+V+ + I KV + + G+ V A + + ++ +++D Sbjct: 1952 THVLVVEDNLINVKVIKRQLSLKGYSVSVAMDGRQGLDILYEDDQHPSELGRIGIVLMDI 2011 Query: 55 SMEGVLEF--IAHVRQMPLGTDV----FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108 M + I +R V V + E+ +G + +KP+ E Sbjct: 2012 QMPVMNGLDAITELRASEKTGKVKQRYPVIAVTGNARKEQTEQFLASGFDDICVKPYKIE 2071 Query: 109 TLRFAMRELP 118 ++ M L Sbjct: 2072 DVQNRMEALL 2081 >gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ L GF A + +A E ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44] gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + EA E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDY-DLILLDIMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + L + + + G G++ +++KPF+ + ++ + + Sbjct: 65 EVCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 121 >gi|209544812|ref|YP_002277041.1| two component transcriptional regulator PhoB, winged helix family [Gluconacetobacter diazotrophicus PAl 5] gi|209532489|gb|ACI52426.1| two component transcriptional regulator PhoB, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 243 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R+ G+ V A +A P+ +V+D + G L+ Sbjct: 20 ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAV-RRPDLMVLDWMLPGLSGLD 78 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + L I G GA+ ++ KP + E L+ +R L + Sbjct: 79 VCRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA 138 Query: 122 KSKDEN 127 ++ Sbjct: 139 PPAEQM 144 >gi|119486748|ref|ZP_01620723.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] gi|119456041|gb|EAW37174.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] Length = 456 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 59/132 (44%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + N+ G+ V +A S A + E E LP+ +++D M + Sbjct: 10 TNILVVDDYLDNLTLLTIILNNLGYQVRQADSGKTALKAVE-EKLPDLILLDIQMPEMDG 68 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE--L 117 + ++ P D+ + +L + + G G ++ KPF E + + + + Sbjct: 69 YSCCQQLKANPKTKDIPIIFLSAFNNAVDKVKGFEVGGEDYITKPFLLEEVIARVEKQLI 128 Query: 118 PQMQKSKDENQF 129 + Q+++ + + Sbjct: 129 LKQQRNQLKQEL 140 >gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 6/131 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + + G+ V + + + KE + L++D + G Sbjct: 3 KKILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINIL-KEKSFDLLLLDIMLPGLNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E + +R+ +D+ + L + + E + G GA+ +L KPF E L +R + Sbjct: 62 MEVCSQIRE---FSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLR 118 Query: 120 MQKSKDENQFL 130 + EN+ + Sbjct: 119 RDEGNLENENI 129 >gi|114561499|ref|YP_749012.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332792|gb|ABI70174.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LL+D + + L GF++ +A + +++ + +++D + + Sbjct: 1 MNRILLIDDDIGLSDLLSQLLELEGFVLTQAYDGEQGLMMAQQQD-FDLILLDVMLPKLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L D + G GA+ +L KPFN L +R + + Sbjct: 60 GF-EVLRALRQRKQTPILMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRR 118 Query: 121 QKSKDEN 127 ++ ++ Sbjct: 119 AQTTQQD 125 >gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF EA +A E KE P+ +++D + V F Sbjct: 4 KILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEK-PDLILLDIMLPKVDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ + + + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 TVC-RKLRQTISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVS 121 Query: 123 SKD 125 S++ Sbjct: 122 SEN 124 >gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] Length = 224 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D R+ R + G++V A + E +E + +++D M + Sbjct: 1 MK-ILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMA-QEYHYDLILLDVMMPELD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V + ++ V +L + E I G GA+ +L+KPF+ L +R + Sbjct: 59 GW--EVMKTLDAQNIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRR 116 Query: 121 QKSKDENQFLD 131 + ++ L Sbjct: 117 GANVKRDELLQ 127 >gi|265765508|ref|ZP_06093783.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] gi|263254892|gb|EEZ26326.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] Length = 1361 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ + VR+ R LF + V EA E E +P+ ++ D M Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1170 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ + + L + + ++ G+ +GA+ +++KPFN E L+ + L Sbjct: 1171 FVCCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1230 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1231 QRERLKR 1237 >gi|262373678|ref|ZP_06066956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311431|gb|EEY92517.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 254 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D + L IAG AGA+ +L KPFN L +R + + Q Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139 >gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 240 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ H + + R D G+ + + A EK+ + + +++D + GV Sbjct: 5 RKILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQ-VWDAVILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + V + + G GA+ +L KPF+ L ++ L + Q Sbjct: 64 LEICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRRQ 123 Query: 122 KSKDENQFLDA 132 ++ +N ++A Sbjct: 124 EAMGQNIRMEA 134 >gi|253563785|ref|ZP_04841242.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] gi|251947561|gb|EES87843.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] Length = 1361 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ + VR+ R LF + V EA E E +P+ ++ D M Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1170 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ + + L + + ++ G+ +GA+ +++KPFN E L+ + L Sbjct: 1171 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1230 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1231 QRERLKR 1237 >gi|90414906|ref|ZP_01222870.1| transcriptional regulatory protein CpxR [Photobacterium profundum 3TCK] gi|90323962|gb|EAS40558.1| transcriptional regulatory protein CpxR [Photobacterium profundum 3TCK] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + GF + EA + E + + +++D M + Sbjct: 1 MAKILLVDDDVELTSLLTDILEMEGFDIVEANNGIEGLAKIDTS--IDLILLDVMMPKMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 G-TQMLRKLRESFATPVLMLTAKGEEIDRVLGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKDENQF 129 + + N Sbjct: 118 TQLTENNLR 126 >gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + ++ G++ FEA EA + KE P+ +++D + + F Sbjct: 4 KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMA-KEQNPDLIILDVMLPKMDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 TV-LKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRR 119 >gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 223 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 4/118 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +R+V L + G+ V EA A + + +++D M + F Sbjct: 4 KILIVDDNQEIREVVSVLLENEGYEVQEAEDGEIAIAKAK---DMDLIILDVMMPKMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ ++ + +L + + G +G + +L KPF+ L ++ L + Sbjct: 61 -KACRQIREVSNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRR 117 >gi|262409249|ref|ZP_06085793.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294645954|ref|ZP_06723622.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806056|ref|ZP_06764914.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262352996|gb|EEZ02092.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292638699|gb|EFF57049.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294446739|gb|EFG15348.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1341 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + + + +A +E P+ ++ D M + Sbjct: 1077 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDLVISDIMMPEMSG 1134 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + M+ G GA++++ KPF+ L+ ++ L Sbjct: 1135 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLA 1194 Query: 120 MQKSKDE 126 + + Sbjct: 1195 NRALLRQ 1201 >gi|189464788|ref|ZP_03013573.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM 17393] gi|189437062|gb|EDV06047.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM 17393] Length = 1288 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + +R + F + + + EA + EA E +KE P + D M + Sbjct: 1041 KSILIVDDNKDLRNFLKCSFENQ-YYILEAGNGNEAWELLQKES-PELTISDVMMPDMDG 1098 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ + + V L D + G GA ++ KPF+ L ++ L + Sbjct: 1099 FELCKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMR 1158 Query: 120 MQKSKDE 126 ++ E Sbjct: 1159 NREIVRE 1165 >gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis subsp. mobilis ZM4] gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis ZM4] gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LLLV+ + ++ + F+ F V EA +E P+ +++D +EG + Sbjct: 5 RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEAL-LLARENPPDIMLLDWMVEGTSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ P ++ + L + + I G GA+ ++ KPF+ L + + + Sbjct: 64 EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123 Query: 121 QKSKDENQFLD 131 + + L+ Sbjct: 124 IRPALSKEQLN 134 >gi|317494184|ref|ZP_07952600.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917957|gb|EFV39300.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 464 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V ++ +F+ G VF A + +A E+E P+ +++D M + Sbjct: 6 RILIVDDEKNVLRMLNTVFSQEGNQVFCADNGQDALAIFEQE-RPDVVLMDIRMPTMNGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R D + + E + R GA +++KPF + L+ + Q++ Sbjct: 65 EALQRMREKWLDTPIILMTAYAAVETAVEALRLGAFDYVIKPFELDELKLLINRALQLRN 124 Query: 123 SKDENQFL 130 K E L Sbjct: 125 MKQEINIL 132 >gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + + +V+D + G+ Sbjct: 14 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 73 GLEVARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 132 Query: 121 QKSK 124 ++ Sbjct: 133 GSAE 136 >gi|288958709|ref|YP_003449050.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] gi|288911017|dbj|BAI72506.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] Length = 464 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A++ +A E E P+ +++D M G+ F Sbjct: 4 RVLVVDDVLPNVKLLAAKLTREYFNVLTASNGPDALEMVRTES-PDIVLLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + V + D + G AGA+ FL KP N L +R L ++ Sbjct: 63 EVCEKIRSDPATMHIPVVMVTALSDIADRVRGLEAGADDFLTKPVNDIALFARVRSLVRL 122 Query: 121 QKSKDENQFLDA 132 + DE + ++ Sbjct: 123 KMMMDEWRLRES 134 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 S+L+++ S + + V A + +A E L +V + E L Sbjct: 157 SVLVLEDSVLDLEKVTETLQRDHNTVMSADTCAKALERALGGSLDLVVVSLTLLNEDGLR 216 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R V + ++ + D ++ G GAN +++KP +R L R + + Sbjct: 217 LCSQLRSHERTRQVPILLMVDDGDLGQVAKGLELGANDYVVKPVDRNELLARARTQIRRK 276 Query: 122 KSKDENQ 128 + ++ + Sbjct: 277 RYQERLR 283 >gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] Length = 237 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + K N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNY-NLVILDIMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|167764904|ref|ZP_02437025.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183] gi|167697573|gb|EDS14152.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183] Length = 1473 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 10/133 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + +R + +F F V EA + E K+ LP+ ++ D M + Sbjct: 1211 TILIVEDNQELRFFIKTIFIQH-FNVIEAENGIIGLEK-SKKYLPDIIISDVMMPEKDGI 1268 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ + + + L + E I G +GA+ ++ KPF+ L+ + L Sbjct: 1269 EMVRELREDMSTSHIPIVMLTAKSTIESRIEGLESGADDYITKPFSAAYLKARIFNLI-- 1326 Query: 121 QKSKDENQFLDAI 133 D+ + L A+ Sbjct: 1327 ----DQRKKLQAL 1335 >gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] Length = 235 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ H + + R D G+ + +A + E + + +++D + Sbjct: 1 MKQILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPW-DAVILDLMLPNVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQM + V + I G GA+ +L KPF+ + L ++ L Sbjct: 60 GLEICRRIRQM--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 117 Query: 119 QMQKSKDENQ 128 + Q++ + Q Sbjct: 118 RRQQAMGQAQ 127 >gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 230 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA + + +++D + + Sbjct: 3 KKVLVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSY-DMILLDVMLPKMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +DV + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQAIRE---FSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDENQFLDAI 133 + Q ++ Sbjct: 119 RTSPERAPQVQSSV 132 >gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] Length = 244 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ + +R V G+ V EA +A + + + +++D M Sbjct: 23 MIKILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDN-FSLVLLDIMMPKRD 81 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE A +R++ +DV + L + G + GA+ ++ KPF+ + L ++ + Sbjct: 82 GLEVCAEIRKL---SDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSIL 138 Query: 119 QMQKSKDENQF 129 + +++F Sbjct: 139 KRAGLLQDSEF 149 >gi|298493029|ref|YP_003723206.1| response regulator receiver protein ['Nostoc azollae' 0708] gi|298234947|gb|ADI66083.1| response regulator receiver protein ['Nostoc azollae' 0708] Length = 121 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+V+ S R++ L G V A EA E + P+ +V+D M + Sbjct: 1 MSTVLIVEDSIAQREMITDLLKASGLTVTHAGDGVEALEAIQSTP-PDLVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G + GA++++ KPF L +++L Sbjct: 60 GYELCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] Length = 233 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 ++ + Sbjct: 119 RHYAQPAQE 127 >gi|269103945|ref|ZP_06156642.1| transcriptional regulatory protein CpxR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163843|gb|EEZ42339.1| transcriptional regulatory protein CpxR [Photobacterium damselae subsp. damselae CIP 102761] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + GF V +A + + E + +++D M + Sbjct: 1 MAKVLLVDDDTELTALLHDILEMEGFEVEQANNGEQGLEKINAS--IDLVLLDVMMPKMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ V L + D + G GA+ +L KPF+ L MR + + Sbjct: 59 G-TEMLRRLREKYSTPVLMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARMRAILRR 117 Query: 121 QKSKD 125 ++ D Sbjct: 118 TQALD 122 >gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 227 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ + +L G+ V A +A E E + +++D + G Sbjct: 1 MTKILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGA-DIILLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRAIRAKSM---VPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVL 116 Query: 119 QMQKSK 124 + +++ Sbjct: 117 RRGQAQ 122 >gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGVDLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 Query: 121 QKSKDEN 127 ++ + Sbjct: 120 GAAEPQQ 126 >gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX] gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX] Length = 232 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+ D +R+ G+ A E + + + L++D M G Sbjct: 5 RTVLIADDDRAIRESLERALQLEGYQTRTAADGVETLAAVHSDPV-DLLILDVMMPGVDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L +R G + L V+ +AG AGA+ +L KPF + L +R L + Sbjct: 64 LGVCRVLRA--EGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium sp. M14] Length = 230 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++V+ + + R+ G++V EA + +E +P+ L++D + G + Sbjct: 4 KVMIVEDEEALSVLLRYNLEAEGYLVETIGHGEEA-DIVLQESVPDLLILDWMLPGVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + V L + + + G GA+ +L+KPF+ L +R L + Sbjct: 63 ELCRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVRALLRR 122 Query: 121 QK 122 K Sbjct: 123 SK 124 >gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL F2-208] gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A] Length = 246 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 13 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +V + L + + I G GA+ ++ KPF+ + ++ + + + Sbjct: 72 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 131 Query: 123 SKDE 126 K E Sbjct: 132 GKAE 135 >gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] Length = 229 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 1/131 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + ++ ++ G+ V +A EA + L++D M + Sbjct: 2 KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+++ + + + L + I G AGA+ ++ KPFN + ++ + + + Sbjct: 62 -EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ 120 Query: 123 SKDENQFLDAI 133 + + D + Sbjct: 121 MQLTKEEPDEL 131 >gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + ++ GF V ATS A K+ P+ +V+D + + F Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAA-KDHRPDLVVLDVMLPDLDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 GT V +L + I G G + ++ KPF+ E L +R + + Sbjct: 68 EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 127 Query: 123 SKDE 126 + D+ Sbjct: 128 NGDQ 131 >gi|183597003|ref|ZP_02958496.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827] gi|188023658|gb|EDU61698.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827] Length = 239 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V A + + + + +V+D + G Sbjct: 6 KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRILTRESIHLIVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + +V G+ A + EA+EF E P+ +++D + Sbjct: 6 TKVLIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYL-EYNPDIVLLDVMIPYIDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + +R+ + V + + D + GA+ +++KPF + L ++ + + Sbjct: 65 IDILKWIRKQ---KETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLR 121 Query: 120 MQKSKD 125 S++ Sbjct: 122 RYSSEN 127 >gi|330504290|ref|YP_004381159.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918576|gb|AEB59407.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 244 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V R+ E + +++D + Sbjct: 6 KSILLVDDDQEIRELLETYLSRVGFQVRAVADGGAFRQSLCAESA-DLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VR+ V + L D + G GA+ +L KPF+ L ++ L + Sbjct: 65 FSLCRWVREHQRFAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLR 124 Query: 120 MQKSKDE 126 + E Sbjct: 125 RAQFTQE 131 >gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 215 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L+LVD + + + G+ V A + EA E E E LP+ ++ D M + Sbjct: 10 KRLMLVDDDPNLILLVKDYLEFRGYDVVTAENGREALEKLE-EDLPDLIICDVMMPEMDG 68 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + HVR+ P + + V +L + + + G GA+ +++KPF E L + + Sbjct: 69 YTLVKHVREDPRTSWIPVLFLSAKGQSQDRVKGLSTGADVYIVKPFEPEELVAQVESSLK 128 Query: 120 M 120 Sbjct: 129 Q 129 >gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] Length = 245 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 4/128 (3%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEFIA 64 VD +R + D GF V A E +++LP+ ++ D M + Sbjct: 24 VDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFAKA-QQMLPDVVISDVMMPRLDGYGLLQ 82 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-QKS 123 +R V +L + G AG + ++ KPF+ + L +R + Q Q+ Sbjct: 83 KLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQQRL 142 Query: 124 KDENQFLD 131 E Sbjct: 143 LQEAARFA 150 >gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] Length = 237 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + + V A + EA + N +++D M + Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKY-NLIILDLMMPKVDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R T++ + L + I G GA+ ++ KPF+ + ++ L + Sbjct: 64 EVCRRLRNK---TNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120 >gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 234 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + + + + F+ A+ A E +++ P+ +++D + L Sbjct: 2 NILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQ-QPDLIILDLMLPKLDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ D ++ L + + + G GA+ +L+KPF+ L +R L + Sbjct: 61 EVCTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120 >gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] Length = 243 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-TQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V YL D + + G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 246 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD V KV N G+ V A +A E KE P+ +V+D + + Sbjct: 1 MTCILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKE-APDLVVLDVMLPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R V + +L + +AG GA+ +L KPF+ + L + + Sbjct: 60 GFAVCRRIRAESC---VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 239 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + + + G+ V A + E + P +++D ++ Sbjct: 1 MSRILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRA-FQPALVILDLNLPDVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +++ V+V L V + G + GA+ +L KPF+ L+ ++ + Sbjct: 60 GYDLCQQMQKETG---VYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAIL 116 Query: 119 QMQKSKDE 126 + Q+ K E Sbjct: 117 RRQRMKTE 124 >gi|88807104|ref|ZP_01122616.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788318|gb|EAR19473.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 265 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R++ GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDRDMRELVSGHLEHSGFDVQSAEDGIKG-QALALQYSPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + L + ++G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122 >gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 236 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ R +D G+ V E+ ++ D + GV Sbjct: 5 KRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVL-DLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V + I G GA+ +L KPF+ L +R L + Sbjct: 64 LEICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRS 123 Query: 122 KSKDENQFLDA 132 ++ N L+A Sbjct: 124 EALARNAKLEA 134 >gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01] gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-03] gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-07] gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-22] gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-26] gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-32] gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-12] Length = 229 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 5/137 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ LL+V+ + ++ + G+ V A E ++ P+ L++D + G Sbjct: 1 MNKADLLVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQV-RQKRPDLLLLDWMLPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 LE +R P + + L + I G GA+ +L+KPF+ E L ++ Sbjct: 60 ISGLEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKA 119 Query: 117 LPQMQKSKDENQFLDAI 133 + + D+ D + Sbjct: 120 MLRRLPPADKTLRFDTL 136 >gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 236 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V A++ +A + + +P+ +++D M + Sbjct: 12 KVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKA-FVPDLILLDIMMPQLDGI 70 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ P + ++ +L + +A GA+ ++ KP L + L + Sbjct: 71 ETGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRR 130 Query: 121 QKSKDE 126 + K E Sbjct: 131 EAQKAE 136 >gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16] Length = 237 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + E+ P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKV-NEINPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 R++ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 121 ---QKSKDENQ 128 QK DEN+ Sbjct: 121 DIVQKQVDENE 131 >gi|254482005|ref|ZP_05095247.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214037695|gb|EEB78360.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 231 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D + + GF V EA +++ + LV+D + G+ Sbjct: 1 MKDHVLIIDDDKELCALLAQYLELQGFEVSSIHDGAEAVTHLQQQEY-DTLVLDIMLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R++ TD V L + I G GA+ +L KP N L +R + + Sbjct: 60 MGL-DVLRKIRDFTDTPVLMLTARGEDTDRIVGLEMGADDYLPKPCNPRELAARLRAILR 118 Query: 120 MQKSKDENQ 128 + D N+ Sbjct: 119 RSQLTDTNE 127 >gi|209514967|ref|ZP_03263836.1| PAS modulated sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. H160] gi|209504593|gb|EEA04580.1| PAS modulated sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. H160] Length = 595 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ V L + GF V A A E P +++D M G+ F Sbjct: 20 ILVVEDVPANLSVLLDLLSGAGFTVSVAEDGESALEQVAYA-QPALILLDVMMPGLDGFA 78 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ V ++ D + G GA ++ KPF E + + ++Q Sbjct: 79 TCRRLKANLATREIPVIFMTGLTDTIDKVKGLELGAVDYITKPFQHEEVLARVNTHLELQ 138 Query: 122 KSKDENQFLDA 132 + K Q + Sbjct: 139 RLKLRLQKSEE 149 >gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20] gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20] Length = 229 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ + G+ V A+ A + ++E + +++D + + Sbjct: 1 MAKILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQES-FDAILLDLMLPVID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V + + D + G GA+ ++ KPF+ + ++ + + Sbjct: 60 GMTLLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRR 119 Query: 121 QK 122 + Sbjct: 120 SQ 121 >gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 241 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ R D G+ V A E+ + LV+D + GV Sbjct: 5 KRVLIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSW-DALVLDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L +R L + Sbjct: 64 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRT 123 Query: 122 KSKDENQFLDA 132 + N +++ Sbjct: 124 DALARNARMES 134 >gi|262373811|ref|ZP_06067089.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311564|gb|EEY92650.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 236 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60 +L+VD +R++ + GF +A +A + + P +++D + G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ ++ V L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 121 QKSKDENQFLDA 132 + + +DA Sbjct: 125 ANALSGEKVIDA 136 >gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 233 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 6/128 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ V V R G+ V A + P+ +V+D + +E Sbjct: 8 ILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEY-RSGRPDLVVLDLMLPKLPGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L D IAG GA+ +L KPF+ L + + + Sbjct: 67 VCRALRIESE---VPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRRA 123 Query: 122 KSKDENQF 129 + + Sbjct: 124 VRTEAAER 131 >gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] Length = 227 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +RK+ R + V EA EA + KE +++D M Sbjct: 5 KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEEALDIFYKEKNIALIILDVMMPKINGW 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR+ + V + L + D + G G + ++ KPF+ + L + L + Sbjct: 65 DVCREVRE---TSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRR 121 Query: 121 QKSKDEN 127 N Sbjct: 122 SGLTAGN 128 >gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] Length = 233 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V A +A E ++ P+ +++D + G Sbjct: 3 RKIVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIY-DIQPDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 S+ +++ Sbjct: 119 RHYSQTQSE 127 >gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + K + G+ V A ++ P+ +++D M G+ Sbjct: 7 RILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGL-MAARDSEPDLVLLDWMMPGLTGV 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V L + E +AG AGA+ +++KPF+ E L +R + + Sbjct: 66 EVCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRRNQ 125 Query: 123 SKDENQFLDA 132 +D FL A Sbjct: 126 PEDPESFLFA 135 >gi|325270713|ref|ZP_08137308.1| DNA-binding response regulator/sensor histidine kinase [Prevotella multiformis DSM 16608] gi|324986959|gb|EGC18947.1| DNA-binding response regulator/sensor histidine kinase [Prevotella multiformis DSM 16608] Length = 954 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+++ + + LF D + V A++ E E +L+P+ ++ D M G+ Sbjct: 705 RLLVIEDNRDIAAYIGSLFADR-YDVSYASNGKEGMEMAL-DLMPDLIITDLMMPGMDGL 762 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR + + + + ++ E+ I G AGA+++++KPFN + LR + +L Sbjct: 763 EVCRQVRGNEIINHIPIIVVTAKITEEERIRGLEAGADAYIVKPFNADELRTRVEKLLDR 822 Query: 121 QKSKD 125 + Sbjct: 823 HRLLR 827 >gi|302339427|ref|YP_003804633.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301636612|gb|ADK82039.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 515 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD I R + G++ EA + +A E E++ P+ +++D M Sbjct: 10 VLVVDDEAINRLLLVTALKKRGYLPEEAANGKDALEKVEQKP-PDLILLDVMMPDLTGFG 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ D+ V + E + G +AGA+ F+ KP N L +R L +++ Sbjct: 69 VCRSLKERKETADIPVILVTALHSREDIEEGIKAGADEFISKPVNINELMVRVRTLLKIR 128 Query: 122 KS 123 + Sbjct: 129 EL 130 >gi|237713842|ref|ZP_04544323.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229445998|gb|EEO51789.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1330 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + + + +A +E P+ ++ D M + Sbjct: 1066 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDLVISDIMMPEMSG 1123 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + M+ G GA++++ KPF+ L+ ++ L Sbjct: 1124 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLA 1183 Query: 120 MQKSKDE 126 + + Sbjct: 1184 NRALLRQ 1190 >gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] Length = 237 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T++ + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCKKLR---DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|169794308|ref|YP_001712101.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii AYE] gi|184159890|ref|YP_001848229.1| response regulator [Acinetobacter baumannii ACICU] gi|213159117|ref|YP_002321115.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB0057] gi|215481865|ref|YP_002324047.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB307-0294] gi|239502828|ref|ZP_04662138.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB900] gi|260553330|ref|ZP_05825944.1| response regulator [Acinetobacter sp. RUH2624] gi|260557862|ref|ZP_05830075.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|293610528|ref|ZP_06692828.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|299768353|ref|YP_003730379.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter sp. DR1] gi|301345738|ref|ZP_07226479.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB056] gi|301511640|ref|ZP_07236877.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB058] gi|301596188|ref|ZP_07241196.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB059] gi|332850113|ref|ZP_08432500.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013150] gi|332871439|ref|ZP_08439956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013113] gi|332873325|ref|ZP_08441279.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6014059] gi|169147235|emb|CAM85094.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii AYE] gi|183211484|gb|ACC58882.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|213058277|gb|ACJ43179.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB0057] gi|213987672|gb|ACJ57971.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB307-0294] gi|260405167|gb|EEW98665.1| response regulator [Acinetobacter sp. RUH2624] gi|260408653|gb|EEX01958.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|292826872|gb|EFF85237.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|298698441|gb|ADI89006.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter sp. DR1] gi|322509805|gb|ADX05259.1| phoB [Acinetobacter baumannii 1656-2] gi|323519817|gb|ADX94198.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|325123908|gb|ADY83431.1| positive response regulator for the pho regulon,autophosphorylates and phosphorylates sensor PhoR [Acinetobacter calcoaceticus PHEA-2] gi|332730962|gb|EGJ62268.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013150] gi|332731476|gb|EGJ62766.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013113] gi|332738388|gb|EGJ69261.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6014059] Length = 236 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60 +L+VD +R++ + GF +A +A + + P +++D + G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ ++ V L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 121 QKSKDENQFLDA 132 + + +DA Sbjct: 125 ANALSGEKTIDA 136 >gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ K ++ G+ + A EA E + + +++D + + Sbjct: 4 KILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANA-DLILLDLMLPKIDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L + + I G GA+ +L KPFN L+ ++ + + Sbjct: 63 QVCQQIRLN---SQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRR 119 Query: 121 QKSKDE 126 +S D+ Sbjct: 120 YQSSDK 125 >gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 229 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 ++VD + ++ ++ G+ V+ A EA E E+ P+ +++D + + Sbjct: 1 MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKV-TEVEPDLVLLDLMLPKMDGLEV 59 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 R++ ++ + + + + G GA+ ++ KPF+ L ++ + + S Sbjct: 60 A-REIRKTYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASS 118 Query: 125 DENQ 128 + + Sbjct: 119 VKEE 122 >gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R + + F ++EA + +A E E + P+ +++D + + Sbjct: 1 MEKILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILE-DKKPDLVILDLMLPDIN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + + + I G GA+ ++ KPFN + ++ Sbjct: 60 GLNICKSIRTKYKY---PIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQL 116 Query: 119 QMQKSKDEN 127 + K EN Sbjct: 117 RRYKEYGEN 125 >gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A +A + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLIILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 233 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A +A + E E + +++D M + Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLVILDIMMPNMDGI 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 68 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 >gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119] Length = 233 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 ++ + Sbjct: 119 RHYAQPAQE 127 >gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 1711 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + +R L + V +A + + P+ +V D M G + Sbjct: 627 RVLVADDNADMRGYLLRLLGPH-YDVRAVADGRQALDAALADP-PDLVVSDVMMPGLDGM 684 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R P V V L E + G AGA+ +L+KPF+ + L +R ++ Sbjct: 685 GLLAALRAEPRTARVPVVLLSARAGEEAAVEGLAAGADDYLVKPFSAQELLARVRAHLEL 744 Query: 121 QKSKDENQ 128 +++ + Sbjct: 745 GRARRAAE 752 >gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni ACN14a] gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni ACN14a] Length = 244 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +V +V + GF V A A E P+ +V+D + G+ Sbjct: 1 MARVLVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARP-PDLVVLDLMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R++ V V L D I G GA+ ++ KPF+ L +R + Sbjct: 60 GL-EVFRRLTARRPVPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVL 116 >gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 235 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ H + + + GF A + E E P+ +V+D + + Sbjct: 3 KKILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEK-PSLIVLDLMLPSMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + + + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 VEVCKSLRQQKV--NTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 244 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + F V A A E K+ P+ ++D M G+ Sbjct: 18 TRVLVVDDEANIADLIKARLEFQDFDVRTANDGASALEIA-KDFQPDAYILDVMMPGMDG 76 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 F + G + V +L + + I G GA+ ++ KPF E + +R + + Sbjct: 77 FTVLNKLREAGDEAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRV 136 Query: 121 QKSKDENQFL 130 Q + E++ L Sbjct: 137 QPEEKEDESL 146 >gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] Length = 228 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA + P+ LV+D M + Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMI-ASDRPDALVLDVMMPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L MR L + K Sbjct: 61 EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 123 SKDENQFLD 131 +D + + Sbjct: 121 PEDAAESMA 129 >gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob [Alicycliphilus denitrificans BC] gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus denitrificans K601] gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB [Alicycliphilus denitrificans BC] gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family [Alicycliphilus denitrificans K601] Length = 233 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ GF A A+ + +LP+ +++D + Sbjct: 1 MKPFPHVLVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDA-VLPDVILLDWMLP 59 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ R V + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GMSGLQLARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKD 125 + + + + Sbjct: 120 AVLRRRAPEQ 129 >gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 234 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 10 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGVDLVVLDLGLPGMD 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 69 GLEVARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 128 Query: 121 QKSKDEN 127 ++ + Sbjct: 129 GSAEPQQ 135 >gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 231 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + ++ G++ FEA EA + KE P+ +++D + + F Sbjct: 4 KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMA-KEQNPDLIILDVMLPKMDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 TV-LKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRR 119 >gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGVDLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 Query: 121 QKSKDEN 127 ++ + Sbjct: 120 GATEPQQ 126 >gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 230 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + +A E E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++V V + + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRVR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067] gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171] Length = 225 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ H GF V EA A E + VID M + Sbjct: 1 MKQILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAA-EQIVTSQQVHLAVIDLMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ V L + G G + ++ KPF E L F +R L + Sbjct: 60 GFELCQKIRTSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119 Query: 121 QKSKDE 126 E Sbjct: 120 STQASE 125 >gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 225 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 7/132 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + + R G+ V A E E P+ +++D M + Sbjct: 3 TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVL-EDEPDLIILDIMMPDLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + + + G GA+ +L+KPF E L ++ L + Sbjct: 62 LEVCKRLRKDAG---IPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLR 118 Query: 120 MQ-KSKDENQFL 130 K E++ L Sbjct: 119 RLDHKKKEDEKL 130 >gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] Length = 237 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +LL D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCKKLR---YKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|332881353|ref|ZP_08449003.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680729|gb|EGJ53676.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1328 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+V+ +R + + F+V A++ EA + KE + ++ D M + E Sbjct: 1056 ILIVEDEESIRNFMKERLSPL-FIVETASNGKEALDIIRKEH-IDLVISDVMMPEMNGYE 1113 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + +L + D + + G + GA +++ KPF+ + L+ + L + Sbjct: 1114 LCTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLLNNR 1173 Query: 122 KSKDE 126 + + E Sbjct: 1174 QKERE 1178 >gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 237 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ G+ V +A KE +P+ +V+D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRM-KERIPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKDENQFLD 131 + L Sbjct: 123 AAPERLATVLA 133 >gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 242 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L++VD +R + R + G+ VF A A + + +V+D + G Sbjct: 7 KKLMVVDDDARIRDLLRRYLSQEGYEVFVAEDSK-AMSRIMVKERFDLIVLDLMLPGEDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L + + I G GA+ +L KPFN L + + + Q Sbjct: 66 LSICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRRQ 125 >gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7] gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] Length = 225 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 4/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + +FG V+ A E +K L++D M + Sbjct: 1 MAKILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWELTQKND-FQLLILDIIMPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 RQ V L E +++G AGA+ +L+KPF+ + L ++ L Sbjct: 60 GLQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALL 118 Query: 119 QMQKSKD 125 + ++ Sbjct: 119 RRSGNES 125 >gi|239502003|ref|ZP_04661313.1| osmolarity response regulator [Acinetobacter baumannii AB900] Length = 254 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQ-MDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D + L IAG AGA+ +L KPFN L +R + + Q Sbjct: 81 SICRRLRQTNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139 >gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 230 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A+S EA E ++++D M + Sbjct: 1 MVDILLVDDEPRMLELLTLYLTPIGYNCVCASSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWDTCKKIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|229188858|ref|ZP_04315891.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594563|gb|EEK52349.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 225 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ +++KPF+ E L + + Sbjct: 60 GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVMKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNEHKQIQ 126 >gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 223 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115 Query: 119 QMQKSKD 125 + K+ Sbjct: 116 RRVNKKE 122 >gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus atmophyticus] gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus atmophyticus] Length = 241 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++VD IVR++ + + G+ V A EA + KE P +V+D M + Sbjct: 9 KIMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKE-QPQLVVLDVMMPKLDGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L D I G GA+ +++KPF+ + L +R + + Sbjct: 68 SVCQQLRRE---SDVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRR 124 Query: 121 QK 122 Sbjct: 125 SN 126 >gi|67924013|ref|ZP_00517465.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67854153|gb|EAM49460.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 377 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + ++ + ++ G+ V +A + A ++ P+ +++D +M + Sbjct: 7 NILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIC-QVPPDLILLDINMPSMNGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ D+ V ++ D + G ++ KPF E + + + Sbjct: 66 EVCQQLKEDVKTKDIPVIFISALDDVLDKVKAFDVGGVDYISKPFQTEEVIARIENQLTI 125 Query: 121 QKSKDENQF 129 Q+ K Q Sbjct: 126 QRQKKRLQQ 134 >gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A +A + E E + +++D M + Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKDFDLIILDIMMPNMDGI 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 68 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 >gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787] gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787] Length = 225 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + G ++ EA EA + + +++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLEREGHIIIEAADGMEAMDIFYENKDIALIILDVMMPRMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR + + V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREVRAL---SQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKR 121 Query: 121 QKSKDENQFLDA 132 ++ +DA Sbjct: 122 GRAAASEDLIDA 133 >gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A E + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGV-DLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|186683870|ref|YP_001867066.1| response regulator receiver modulated serine phosphatase [Nostoc punctiforme PCC 73102] gi|186466322|gb|ACC82123.1| response regulator receiver modulated serine phosphatase [Nostoc punctiforme PCC 73102] Length = 378 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + ++ + + + G+ V A+S E E P ++ D M G Sbjct: 1 MFQILIIDDDYSIKILLKRMLEKQGYEVVTASSGEEGIEKALA-CHPALIICDWIMPGLT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ P F L + G AGA+ F+ KP L+ +R Sbjct: 60 GLEVCQRIKTDPQFFTTFFILLTSLDSVADCVKGLDAGADDFISKPIEHNELQARVRAGL 119 Query: 119 QMQKSKDENQ 128 ++ + + Q Sbjct: 120 RLHQLSRDLQ 129 >gi|182412781|ref|YP_001817847.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177839995|gb|ACB74247.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 372 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +V + G+ + A +A + + +++D M G+ F Sbjct: 12 RILVVDDQETNLRVLGDMLAHLGYDIVPALDGEQALRRLSSRPV-DLILLDVLMPGLDGF 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R D+ + +L D ++ +G ++ KPFN L +R + Sbjct: 71 EVCRRIRSNVAWIDIPIIFLSAADDKSLIVRALESGGVDYITKPFNAAELLSRVRTHLAL 130 Query: 121 QKSKDENQFLDA 132 + ++D + L Sbjct: 131 KTARDRLRQLAE 142 >gi|60680360|ref|YP_210504.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60491794|emb|CAH06552.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1361 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ + VR+ R LF + V EA E E +P+ ++ D M Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1170 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ + + L + + ++ G+ +GA+ +++KPFN E L+ + L Sbjct: 1171 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1230 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1231 QRERLKR 1237 >gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] Length = 240 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +V + L + + I G GA+ ++ KPF+ + ++ + + + Sbjct: 66 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 123 SKDE 126 K E Sbjct: 126 GKAE 129 >gi|324112763|gb|EGC06739.1| sigma-54 interaction domain-containing protein [Escherichia fergusonii B253] gi|325496734|gb|EGC94593.1| acetoacetate metabolism regulator (two-component system response regulator) [Escherichia fergusonii ECD227] Length = 461 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR++ F+ G+ A + EA + + P+ +++D M + Sbjct: 6 RILIVDDEENVRRMLSTAFSLQGYDTHCACNGNEALPLFTR-VQPDVVLMDIRMPEMDGI 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A + + + E + R+GA +++KPF+ + L ++ Q+Q Sbjct: 65 SALKAMRGHNPRTPIVLMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLVVQRALQLQS 124 Query: 123 SKDENQFL 130 K E + L Sbjct: 125 MKKEIRQL 132 >gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + K+ G VF A + +A + E + +++D M Sbjct: 5 KKILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIF-NEQQLDLVILDVMMPEYDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L + + G GA+ ++ KPF+ + L ++ L + Sbjct: 64 WAVCREIRK---TSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLR 120 Query: 120 MQKSKDENQFLD 131 ++ +NQ + Sbjct: 121 RI-AEHKNQMIS 131 >gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 223 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|91777087|ref|YP_546843.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91711074|gb|ABE51002.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 241 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD H +R++ D GF V EA + E KE + N +V+D + G Sbjct: 7 ILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPV-NLIVLDLMLPGEDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR D+ + L + I G GA+ +L KPF+ L ++ + + Sbjct: 66 LCREVRAQG---DLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRT 122 Query: 122 KS 123 ++ Sbjct: 123 RN 124 >gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] Length = 229 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 7/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + GF V A + + + ++D + GV Sbjct: 1 MSKILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDY-DLFILDLMLPGVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F RQ+ + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GF-EICRQVRDEKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMAR 118 Query: 121 Q-----KSKDENQFLD 131 + +EN+ ++ Sbjct: 119 YDRLIGSAAEENKVIE 134 >gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes] Length = 226 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + V++A S A E EK P+ +V+D + Sbjct: 1 MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++ ++V + L + D + ++ G + GA+ ++LKPF+ + L ++ + Sbjct: 59 GLTVCRKIREI---SNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVL 115 Query: 119 QMQKSKDENQFLDA 132 + ++ L + Sbjct: 116 RRTETLSNPNKLSS 129 >gi|317472204|ref|ZP_07931533.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900293|gb|EFV22278.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 226 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 10/127 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + + + G+ VF A + EA + P+ +++D +M Sbjct: 1 MKENYKILIVDDEQSILDMLKLQLEFEGYTVFIACNAKEALDKL--SYSPDIILLDINMA 58 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ +R + +L V + I G AG + ++ KPF+ L + Sbjct: 59 GMNGLDLCVSIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARIS 115 Query: 116 ELPQMQK 122 + ++ Sbjct: 116 AHLRREQ 122 >gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] Length = 228 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 6 RIAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 >gi|92117963|ref|YP_577692.1| response regulator PleD [Nitrobacter hamburgensis X14] gi|91800857|gb|ABE63232.1| response regulator receiver modulated diguanylate cyclase [Nitrobacter hamburgensis X14] Length = 457 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A++ +A E C + + +++D M + F Sbjct: 4 RVLVVDDIPANVKLLEARLSAEYFDVMTASNGAQALEICARAKC-DIVLLDIMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRLRA 133 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 2/111 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + + + V T EA + +V + L Sbjct: 157 RILLVDDRASSYERLASVLSAE-HTVDVETDPSEALFHAAENSYDLLIVSLGLENFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + R + V + + +++ G G N +LL+P ++ L Sbjct: 216 LCSQARSLERTRHVPILAIADANSNTRLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|78356985|ref|YP_388434.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219390|gb|ABB38739.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 363 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +H+ + + + VF A + EA E + P+ +++D M Sbjct: 2 MKRTNRILIVDDNHVNILILKQILEQE-HQVFAAVNGYEALELASGPMKPDIILLDVLMP 60 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +++ D+ V ++ + + E AG GA +++KP + +R Sbjct: 61 EMDGYEVCRRLKENDETRDIPVLFVTTQGEEEDEAAGLALGAVDYIVKPVRPSIVLARVR 120 Query: 116 ELPQMQKSKDENQFL 130 Q++ +D+ + L Sbjct: 121 NHLQLKTHQDQLEDL 135 >gi|301161893|emb|CBW21437.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1361 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ + VR+ R LF + V EA E E +P+ ++ D M Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1170 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ + + L + + ++ G+ +GA+ +++KPFN E L+ + L Sbjct: 1171 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1230 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1231 QRERLKR 1237 >gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 230 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD VR+ R + G+ VF A +A E EKE P +++D M + Sbjct: 1 MK-IVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKE-QPELVILDVMMPRMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G D + L +AG AGA+ +L KPF E L +R L Sbjct: 59 GLEVCRTLR--SAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLL 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRAAA 121 >gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB [Jonquetella anthropi E3_33 E1] gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB [Jonquetella anthropi E3_33 E1] Length = 237 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+++ + + G+ A E P+ +++D + G Sbjct: 1 MSRAHILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTG-RPDLVLLDLMLPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 E +RQ P D V + D + +AG AGA+ ++ KPF+ L + Sbjct: 60 LEGWEVCRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEA 119 Query: 117 LPQMQKSKDEN 127 + + ++ Sbjct: 120 QLRRRSMARQD 130 >gi|33239602|ref|NP_874544.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237127|gb|AAP99196.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 255 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL++ +R++ GF V A + + + P+ +++D + V Sbjct: 5 ILLIEDDKDMRELVGGHLEHTGFDVQVAEDGIKG-QALALQYKPDLILLDLMLPNVDGLT 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + + + + G +GA+ +L KPF+ E L ++ L + Sbjct: 64 LCQRLRRDERTSSIPILMITALGATKDKVTGFNSGADDYLTKPFDLEELHVRIKALLRR 122 >gi|119774853|ref|YP_927593.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767353|gb|ABL99923.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 224 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLV+ + R++ G V AT EA EK+ P +++D M G+ Sbjct: 1 MNKILLVEDDNGFRELLTEALEREGLCVSVATDGFEALTLMEKDT-PELILLDLMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +++ + V + E+ I G + GA+ FL KPF+ + L ++ L + Sbjct: 60 GFSMLMQRR---NQLPVIVISALDSEEERIRGYQLGADDFLTKPFSIKELIVRIQALARR 116 Query: 121 QKSKD 125 K +D Sbjct: 117 LKRQD 121 >gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952] gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952] Length = 226 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + V++A S A E EK P+ +V+D + Sbjct: 1 MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L + D + ++ G + GA+ +++KPF+ + L ++ + + Sbjct: 59 GLTVC-RKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117 Query: 121 QKSKDENQFLDA 132 ++ L + Sbjct: 118 TETLSNPNKLSS 129 >gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL J1-023] Length = 240 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V + L + + I G GA+ ++ KPF+ + ++ + + + Sbjct: 66 EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 123 SKDE 126 K E Sbjct: 126 GKAE 129 >gi|284036190|ref|YP_003386120.1| Crp/Fnr family transcriptional regulator [Spirosoma linguale DSM 74] gi|283815483|gb|ADB37321.1| transcriptional regulator, Crp/Fnr family [Spirosoma linguale DSM 74] Length = 350 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++LL++ + I+R+ + G+ V A + E + P+ ++ D M Sbjct: 1 MKNILLIEDNDIIRENTAEILELSGYRVTTANNGKAGIELALVD-RPDLIICDIMMPVLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + V + P T + +L + + + G GA+ +L KPF+ L A+ Sbjct: 60 GYGVLHIVNKNPALTGIPFIFLTAKSERDDFRRGMELGADDYLTKPFSESELLSAIESRL 119 Query: 119 QM 120 Sbjct: 120 NR 121 >gi|281422568|ref|ZP_06253567.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella copri DSM 18205] gi|281403392|gb|EFB34072.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella copri DSM 18205] Length = 935 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + +R+ R L D ++V EA E KE +P+ ++ D M + Sbjct: 685 TVLVIDDNTDIRQYERTLLQDE-YIVLEAADGKEGLAVALKE-VPDLVICDVMMPVMDGL 742 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + E G GA+S++ KPF+ + L + L + Sbjct: 743 ELTEQLKTNTATSHIPVIMLTAKNLEEHRAEGYEHGADSYITKPFHSKVLLARIENLLRQ 802 Query: 121 QKSKD 125 ++ Sbjct: 803 RQLLK 807 >gi|224538238|ref|ZP_03678777.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM 14838] gi|224520170|gb|EEF89275.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM 14838] Length = 1472 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + +R R +F + F V EA + E K +P+ ++ D M + Sbjct: 1211 TILIVEDNQELRFFIRTIFAQY-FNVIEAENGNIGLEK-SKLYMPDIIISDVMMPEKDGI 1268 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R + + + L + E I G + GA+ ++ KPF+ L+ + L + Sbjct: 1269 EMVRELRDEMTTSHIPIVMLTAKSTIESKIEGMKLGADDYITKPFSAAYLKARIFNLLEQ 1328 Query: 121 QKSKD 125 +K Sbjct: 1329 RKKLQ 1333 >gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii] gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii] Length = 1441 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGV-- 59 +L VD + + V ++L G+ + +A EA + E+E LP+ +++D M G+ Sbjct: 721 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 780 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+M + + V + + E ++ G AG+N +++KPF R+ + + + Sbjct: 781 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 840 Query: 120 MQ 121 + Sbjct: 841 FR 842 >gi|332882310|ref|ZP_08449938.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679694|gb|EGJ52663.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 230 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + R +FG V A A +K + + LV+D M + Sbjct: 6 MAKILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQKG-VFDLLVLDVIMPKMD 64 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R L E ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 65 GLEVCRQFRLKEGY-HTPAIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 123 Query: 119 QMQKSKDENQF 129 + + + + Q Sbjct: 124 RRGRERPDRQL 134 >gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [uncultured actinobacterium HF0770_13M05] Length = 224 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 3/116 (2%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IA 64 V+ + + R + GF VFE+ S A + E + ++ID + G+ Sbjct: 2 VEDDADISSLLRFSLENTGFSVFESPSAEAAMQIL-TERRTDLVIIDWMLPGMDGLNLTK 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L D I G +G + ++ KPF+ L + L + Sbjct: 61 TLRNRADTQKIPIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRR 116 >gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] Length = 228 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 >gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 236 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 12/138 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + K+ + GF+V A E K + +++D + G+ Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKY-DLVLLDLMLPGLDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + L + D E+ + G GA+ ++ KPF L + + + Sbjct: 63 YQVCQKIRE---TSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLR 119 Query: 120 MQK------SKDENQFLD 131 + ++ E L+ Sbjct: 120 RIEQDHEEVNRKEGNRLE 137 >gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 228 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 MD +L+V+ +R + F V EA + E E K P +V+D + G Sbjct: 1 MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PEVVVLDIMLPGVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ ++ + L + ++G GA+ +++KPFN L ++ + Sbjct: 60 GLEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117 Query: 119 QMQKSKDE 126 + + E Sbjct: 118 RRVNAVKE 125 >gi|315180653|gb|ADT87567.1| Response regulator [Vibrio furnissii NCTC 11218] Length = 241 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + GF V + ++ P+ +++D + G Sbjct: 4 THILVVDDDIEICELLDEYLSKSGFSVATVSDGRALAQYLTDHGYPDLVLLDVMLPGEDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ ++V + L D I G GA+ ++ KPF+ L ++ L + Sbjct: 64 FTLCQKIRRD---SNVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120 Query: 120 MQKSKDE 126 + +E Sbjct: 121 RVQVNEE 127 >gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 235 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ GF + A+ + +LP+ +++D + Sbjct: 1 MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDA-VLPDVILLDWMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L+ R + + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GQSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKD 125 + + + + Sbjct: 120 AVLRRRAPEQ 129 >gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 269 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD VR+V G+ V A +A E +E P+ +V+D + + F Sbjct: 25 TLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRES-PDLVVLDVMLPKLDGF 83 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 84 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140 >gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 235 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ GF + A+ + +LP+ +++D + Sbjct: 1 MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDA-VLPDVILLDWMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L+ R + + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GQSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKD 125 + + + + Sbjct: 120 AVLRRRAPEQ 129 >gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 235 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D +R + + ++V A + A + + P+ +V+D + Sbjct: 1 MKKILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDA-FGPDLVVLDLMLPDCS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + V V L + + + G GA ++ KPF+ L ++ + Sbjct: 60 GYDLCKEI---TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVIL 116 Query: 119 QMQKSKDE 126 + +SK+E Sbjct: 117 RRNESKEE 124 >gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 231 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LLLV+ + ++ + F+ F V EA +E P+ +++D +EG + Sbjct: 5 RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEAL-LLARENPPDIMLLDWMVEGTSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ P ++ + L + + I G GA+ ++ KPF+ L + + + Sbjct: 64 EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123 Query: 121 QKSKDENQFL 130 + + L Sbjct: 124 IRPALSKEQL 133 >gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] Length = 237 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + + V A + EA + N +++D M + Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKY-NLIILDLMMPKVDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R T++ + L + I G GA+ ++ KPF+ + ++ L + Sbjct: 64 EVCRRLRNK---TNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120 >gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 242 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA E ++++D M + Sbjct: 18 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +++ + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 77 GWETCKKIRS---FSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEELFARIEAVL 133 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 134 RRTNEHKQIQ 143 >gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 237 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 225 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D VR + + + GF+V A ++ P+ +++D + G+ Sbjct: 4 RILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAV-RDRPPDLVILDVMLPGLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + ++ V L ++ + G GA+ ++ KPF+ + L +R + ++ Sbjct: 63 EVLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRRRE 122 >gi|193212324|ref|YP_001998277.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193085801|gb|ACF11077.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 236 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + + ++ G+ A + EA E + + N +++D + G+ Sbjct: 4 TTILIVEDDRNLAGLLKYNLEKAGYSCLHAATGEEALEQLRQHAV-NMVLLDIMLPGIDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ +D+ + L + + + G G + +++KPF+ L +R + + Sbjct: 63 FEVCRRIRQDVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILK 122 Query: 120 MQKSKDEN--QFLDA 132 + N + L A Sbjct: 123 RDRRNRSNVQEVLRA 137 >gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU] gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900] gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter baumannii ATCC 17978] gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2] gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 228 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + + R GF V +A ++ PN +++D + + Sbjct: 1 MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSF-QQRKPNLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQF 129 + + K E + Sbjct: 117 RRLERKAEPEQ 127 >gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117 Query: 119 QMQKSKDE 126 + + DE Sbjct: 118 RRIEVHDE 125 >gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] Length = 226 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + V++A S A E EK P+ +V+D + Sbjct: 1 MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++ ++V + L + D + ++ G + GA+ +++KPF+ + L ++ + Sbjct: 59 GLTVCRKIREI---SNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVL 115 Query: 119 QMQKSKDENQFLDA 132 + ++ L + Sbjct: 116 RRTETLSNPNKLSS 129 >gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Sulfurihydrogenibium azorense Az-Fu1] gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Sulfurihydrogenibium azorense Az-Fu1] Length = 228 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M + +++ + ++ + F GF V + A E KE P+ +V+D M Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHI-KEDKPDAVVLDLMMPEID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LEF VR + + L + I G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEFCKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVI 119 Query: 119 QMQKS 123 + KS Sbjct: 120 RRSKS 124 >gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 228 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + + + + GF+V A E + + +++D + G+ Sbjct: 1 MK-ILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALS-YNYDCIILDIILPGMS 58 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + V + L E + G GA+ ++ KPF+ L +R L Sbjct: 59 GIEICRFLR-DEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALI 117 Query: 119 QMQKSKDEN 127 + + + Sbjct: 118 RRNQVVRQE 126 >gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 236 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G++V A EA E P +V+D + Sbjct: 3 QKVLVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATN-PELIVLDVMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R V + L + D + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119 Query: 120 MQKSKDE 126 +E Sbjct: 120 RSAIVNE 126 >gi|260173192|ref|ZP_05759604.1| histidine kinase [Bacteroides sp. D2] gi|315921466|ref|ZP_07917706.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695341|gb|EFS32176.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1376 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 18/143 (12%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++LLVD +H + + R F + + A EA + C + LP+ ++ D M + + Sbjct: 1133 TILLVDDNHEILMILREYFVKE-YNIIMAIDGQEALDKCNRS-LPDMIISDVMMPRMNGI 1190 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 E A +++ + + L + E I G GA++++ KPFN L+ +R L Sbjct: 1191 ELCATLKKNLQTCFIPIILLTAKSQIEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLNK 1250 Query: 120 -------------MQKSKDENQF 129 Q+ +D+ Q Sbjct: 1251 SHQMRNLPTTNNVRQEIQDKRQR 1273 >gi|253571309|ref|ZP_04848716.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251839262|gb|EES67346.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1333 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + G+ + ++ +A KE P+ ++ D M + Sbjct: 1081 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDAL-VIIKEFNPDLVISDIMMPEMSG 1138 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + ++ G GA++++ KPF+ L+ ++ + Sbjct: 1139 DELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNILA 1198 Query: 120 MQKSKDE 126 ++ + Sbjct: 1199 NRELLRQ 1205 >gi|229142249|ref|ZP_04270771.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228641187|gb|EEK97496.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 230 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59 M +L+V+ I+R+ H F+ G+ V A + E+E + +++D + + Sbjct: 5 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 64 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L D + + G GA+ ++ KPF L + L Sbjct: 65 DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121 Query: 118 PQMQKSKDENQ 128 + + + Q Sbjct: 122 FKDTNQQVQYQ 132 >gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] Length = 1269 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 61/137 (44%), Gaps = 7/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGV-- 59 +L+VD + +V + + + + +A+ +A + ++ P + +++D M + Sbjct: 886 KILVVDDEPVNLQVLENHLSIQNYNITQASDGLKALKIIKESKEPFDIILLDVMMPKMSG 945 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ ++ V L + + ++ G AGAN +L KPF++ L ++ Sbjct: 946 YEVCRTIRERFPLVELPVLMLTAKNQPKDIVEGFDAGANDYLTKPFSKVELLSRIKTHVL 1005 Query: 120 MQ----KSKDENQFLDA 132 ++ + N+ L Sbjct: 1006 LKLTSENLQTANEKLQE 1022 >gi|29349146|ref|NP_812649.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341054|gb|AAO78843.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1330 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + G+ + ++ +A KE P+ ++ D M + Sbjct: 1078 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDAL-VIIKEFNPDLVISDIMMPEMSG 1135 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + ++ G GA++++ KPF+ L+ ++ + Sbjct: 1136 DELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNILA 1195 Query: 120 MQKSKDE 126 ++ + Sbjct: 1196 NRELLRQ 1202 >gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 234 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ + G+ V +A KE +P+ +V+D + G + Sbjct: 4 RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRL-KERVPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKDENQFL 130 + L Sbjct: 123 ASPERLANVL 132 >gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 239 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A S +A E +EL P ++D M G+ F Sbjct: 11 KVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMA-RELKPEAYILDVMMPGMDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D V +L + E I G GA+ ++ KPF+ E + +R + + Sbjct: 70 ELLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 127 >gi|257439293|ref|ZP_05615048.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165] gi|257198168|gb|EEU96452.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165] Length = 242 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ + +R R L + G+ + EA + A E + +++D M G+ Sbjct: 4 QTILIAEDDPDIRDGVRILLSGEGYHIIEAENGTRALEVFR--PEVDLVILDIMMPGMSG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R++ + V + +L + + G AG + +L KPF+ L ++ L + Sbjct: 62 LRVCEELRKL---STVPILFLTAKSQESDKLLGLTAGGDDYLPKPFSFAELSARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family), BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278] Length = 231 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R+V R + G V EA A + P+ +V+D M L Sbjct: 4 RILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARF-ADDRPDLIVLDVGMPEFDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + V + +L + I G G + ++ KPF+ L + + + Sbjct: 63 EVCRRIR---RTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRR 119 >gi|300914725|ref|ZP_07132041.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter sp. X561] gi|307724041|ref|YP_003903792.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter sp. X513] gi|300889660|gb|EFK84806.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter sp. X561] gi|307581102|gb|ADN54501.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter sp. X513] Length = 310 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 5/126 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+VD + + RK+ + + + G+ V EA EA + K LP+ +++D M G Sbjct: 1 MKGRNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIY-KNKLPDMVILDIVMPG 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F + +R+ + + L + +FE+ I G GA+ +L+KPFN + L F + Sbjct: 60 MTGFDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNN 119 Query: 117 LPQMQK 122 L Q + Sbjct: 120 LFQRIE 125 >gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. 83/13] gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M28] gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M5-90] Length = 228 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 >gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 243 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK + P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-IQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V YL D + + G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|218131895|ref|ZP_03460699.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697] gi|217986198|gb|EEC52537.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697] Length = 1239 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +H +R+ H + F V A +A E EL P+ +V D M + F Sbjct: 996 ILIVEDNHALREFMVHPLREH-FRVTTADDGQQAWEMM-NELQPDLVVSDVVMPRMDGFE 1053 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L D + G GA+++L KPF+ L + + + + Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIRNR 1113 Query: 122 K 122 + Sbjct: 1114 R 1114 >gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 231 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + +V + VF+A + +A E EKE + +++D + + Sbjct: 4 KNILVVDDEPKILEVVASFLESQDYQVFQAENGAKAFEIFEKEN-ISLIILDLMLPDITG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L +V+ ++ G GA+ ++ KPF + L ++ + + Sbjct: 63 EEICKKIRK---TSRVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|17228133|ref|NP_484681.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17129983|dbj|BAB72595.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 438 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + +V D GF V ATS A + E+ LP+ +++D M G+ F Sbjct: 26 VLIVDDTPTNLEVVSETLGDAGFDVAIATSGDRALQQVER-RLPDLILLDVMMPGIDGFE 84 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + ++ D E + GA +++KPF + + + Q+ Sbjct: 85 TCRRLKANDRTCHIPIIFMTALCDSESKVKALELGAVDYIVKPFYEKEVLARVSTHLQLS 144 Query: 122 KSKD 125 + Sbjct: 145 QLTQ 148 >gi|89896369|ref|YP_519856.1| hypothetical protein DSY3623 [Desulfitobacterium hafniense Y51] gi|219667803|ref|YP_002458238.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335817|dbj|BAE85412.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538063|gb|ACL19802.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D I+ + GF A EA + E P+ +++D M +E Sbjct: 7 ILICDDQLIIHETIAAYLKAEGFTYGSAYDGEEALQKAY-ETAPDLIILDLMMPKLSGME 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ TDV + L + + I G GA+ +++KPF+ + ++ + + + Sbjct: 66 VCRTLRK---TTDVPIIMLTAKGEEIDKILGLELGADDYIVKPFSPREVVARVKTVLRRK 122 >gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 226 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ +L GF V + +A ++ + +++D + G Sbjct: 1 MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGA-DLVLLDLQLPGQS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ V V L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRQRSS---VPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116 Query: 119 QMQKSKDEN 127 + Q +E Sbjct: 117 RRQGEPEEL 125 >gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1] gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK P+ +V+D + + F Sbjct: 13 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-TQPDLIVLDVMLPDIDGF 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V YL D + + G G + ++ KPF+ E + +R + + + Sbjct: 72 TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 131 Query: 123 SKDEN 127 + E+ Sbjct: 132 EQVED 136 >gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 230 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + ++ R GF V +A ++ P+ +++D + + Sbjct: 4 MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQF-QQRKPSLMILDLMVPRMD 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 63 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVL 119 Query: 119 QMQKSKDENQF 129 + + K E + Sbjct: 120 RRLERKAEPEQ 130 >gi|153870034|ref|ZP_01999517.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp. PS] gi|152073497|gb|EDN70480.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp. PS] Length = 448 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD +R + + + D GF V A ARE E P+ +++D M + Sbjct: 5 ILVVDDEPDIRSLMKEILEDEGFTVSVAQDGKTARE-LRSEKHPDLILLDIWMPDIDGIS 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + R+ + D V + E + R GA F+ KP + L ++ +M Sbjct: 64 LLKEWRESGMTLDSQVIMISGHGTVETAVEATRLGAYDFIEKPVSIAKLLLTIKRALEMA 123 Query: 122 KSKDEN 127 + EN Sbjct: 124 SLQQEN 129 >gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 228 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + ++ G V + + + + +++D + G+ Sbjct: 1 MEKILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDGARQAVEHY--DLVILDVMLPGMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +RQ+ ++V V L + I G GA+ +L KPFN L +R + + Sbjct: 59 GF-DVLRQVRQSSEVPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQRR 117 Query: 121 QKSKDEN 127 ++++ Sbjct: 118 TDNRNQM 124 >gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL S4-378] Length = 240 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V + L + + I G GA+ ++ KPF+ + ++ + + + Sbjct: 66 EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 123 SKDE 126 K E Sbjct: 126 GKAE 129 >gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271] Length = 225 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E ++++D M + Sbjct: 1 MVDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFILLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + +I G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + L GF V A A E + + +++D + G+ Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNV-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319] gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319] Length = 238 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLVD +R++ + G+++ EA EA E + + +V+D M G+ Sbjct: 5 QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKAL-HIDYDLIVLDLMMPGIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +Q+ + L + + + G G + +++KPF+ + ++ L + Sbjct: 64 -IEACKQIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|284040223|ref|YP_003390153.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283819516|gb|ADB41354.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 236 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + ++ + G+ A + + + + D M Sbjct: 1 MATILLVEDDPNLGQLVQEYLTMKGYPTDRAIDGNQGLQLFMAGKY-DLCIFDVMMPKKD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F DV + +L + E I G +AGA+ ++ KPF+ E L ++ + + Sbjct: 60 GFTLAKEVRMDHRDVPIIFLTAKSMQEDTIQGFKAGADDYMTKPFSMEELLLRIQAILRR 119 Query: 121 QKSKDE 126 + E Sbjct: 120 YQRSTE 125 >gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330] gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium 1,231,501] gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071] gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330] gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium 1,231,501] gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071] gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 226 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + V++A S A E EK P+ +V+D + Sbjct: 1 MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L + D + ++ G + GA+ +++KPF+ + L ++ + + Sbjct: 59 GLTVC-RKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117 Query: 121 QKSKDENQFLDA 132 ++ L + Sbjct: 118 TETLSNPNKLSS 129 >gi|298530355|ref|ZP_07017757.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfonatronospira thiodismutans ASO3-1] gi|298509729|gb|EFI33633.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfonatronospira thiodismutans ASO3-1] Length = 361 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++++D + K+ + + G+ V A + ++ P+ +++D M G+ Sbjct: 8 KNIMIIDDTPANLKLLQEMLQGRGYRVMAFPQGEMALKAAARKP-PDLILLDIRMPGLDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ D+ V ++ D + AG ++ KPF+ E + + + Sbjct: 67 FQVCTRFKEQEGLKDIPVIFISALNDPSDKVQAFAAGGVDYVTKPFHPEEVHARVATHIR 126 Query: 120 MQKSKDENQ 128 ++ + + + Sbjct: 127 LRGLQKQVE 135 >gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 241 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + G+ V E + P+ +V+D M G Sbjct: 5 KILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARE-LQRKLARNRPDLMVLDVMMPGEDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V L + I G GA+ +L KPFN L ++ + + Sbjct: 64 AVVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRRHN 123 Query: 123 S 123 + Sbjct: 124 A 124 >gi|119899035|ref|YP_934248.1| DNA-binding response regulator [Azoarcus sp. BH72] gi|119671448|emb|CAL95361.1| probable DNA-binding response regulator [Azoarcus sp. BH72] Length = 252 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R + G A E + E+ + + +V+D + G Sbjct: 8 ILIVDDDRDIRSLLADYLEKQGLRCTTAADGREMKAALERHRV-DLIVLDLMLPGEDGLT 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++R + + L + I G GA+ +L KPF L +R + + Sbjct: 67 LCRNLRAGGSHANTPILMLTARGEDMDRIIGLEMGADDYLPKPFVPRELYARVRAILRRA 126 Query: 122 KSKDEN 127 ++ N Sbjct: 127 RALPPN 132 >gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] Length = 236 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ A +A P+ +++D M + Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKA-TSFHPDVVILDVQMPRMDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R ++ V +L + G RAGA+ ++ KPF+ + + + L + Sbjct: 71 ETLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAG 130 Query: 123 SKDE 126 + Sbjct: 131 RTQQ 134 >gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] Length = 234 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + + G+ V A +A E P+ +++D + + Sbjct: 5 KILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAF-NDNPDLILLDLMLPKKDGM 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR ++ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 64 EVCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120 Query: 121 QKSKDEN 127 + E Sbjct: 121 VTKQQEE 127 >gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 233 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + A PN +++D + G+ Sbjct: 5 QRILIVDDDENIAELISLYLTKECYETKIVYDGESALSEL-SVFKPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ +V + L + + + G GA+ +++KPF + + ++ + + Sbjct: 64 YQVCREIRKN---NNVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLR 120 Query: 120 MQKS 123 Sbjct: 121 RYHM 124 >gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 233 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 9/125 (7%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + V + + V A EA + KE+ + +++D + Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 59 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + +R+ ++V + L +V+ E + G GA+ +L KPF+ L ++ Sbjct: 60 KISGEEVCSKIRE---FSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116 Query: 116 ELPQM 120 L + Sbjct: 117 ALIRR 121 >gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus gasseri 202-4] gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03] gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus gasseri 202-4] gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03] Length = 235 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + + E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDE 126 + Sbjct: 121 DLTQK 125 >gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] Length = 238 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + + R D G+ + +A EK+ + + +++D + GV Sbjct: 3 KTILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQ-VWDAVILDLMLPGVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + V + + G GA+ +L KPF+ L ++ L + Q Sbjct: 62 LEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQ 121 Query: 122 KSKDENQFLDA 132 ++ +N +DA Sbjct: 122 EAMGQNLLMDA 132 >gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99] gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99] Length = 228 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 >gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 225 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + V +A S EA + KE + +++D M + Sbjct: 1 MKKNILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLI-KENNFDLVILDIMMPKM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + +L + +I G GA+ ++ KPF+ L ++ + Sbjct: 60 DGLETLIHIRKDF-NMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ +L GF V + +A ++ + +++D + G Sbjct: 1 MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGA-DLVLLDLQLPGQS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ V V L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRQRSS---VPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116 Query: 119 QMQKSKDEN 127 + Q +E Sbjct: 117 RRQGEPEEL 125 >gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens SK82] gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens SK82] gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 228 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + + R GF V EA + + P+ +++D + + Sbjct: 1 MKHVMLVEDEVELAGLVRDYLEAGGFEVSVFHDGQEAYDHFL-QRKPSLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQF 129 + K E + Sbjct: 117 RRLDRKAEPEQ 127 >gi|257069251|ref|YP_003155506.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560069|gb|ACU85916.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 231 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLLV+ + + + G+ V A+ +A + +++D + + Sbjct: 1 MTRLLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIAAGAESIDLVILDLGLPDLD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + L D + G AGA+ ++ KPF L+ +R L + Sbjct: 61 GLEVARRLRKGGLECPILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMRR 120 Query: 121 QKSKDE 126 ++ +E Sbjct: 121 SQATEE 126 >gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 11/140 (7%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +VD +R++ G++ S EA E+E P+ V+D + G Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAIT-LEQENPPDLWVLDIMLPG 59 Query: 59 V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + EF +R G++ + + + I G G++ +L KPF+ L + Sbjct: 60 MNGYEFCRRIRA---GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNR 116 Query: 117 LPQM---QKSKDENQFLDAI 133 Q KS E + A+ Sbjct: 117 ALQRWKQMKSHAEQTAISAL 136 >gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 237 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +LL D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCKKLR---YKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|189425047|ref|YP_001952224.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ] gi|189421306|gb|ACD95704.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ] Length = 435 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +LLVD + D + + A S A E +E P +++D M + +E Sbjct: 11 ILLVDDVPSNLHLLVAALKD-DYRIKTAVSGQAALELAAREDRPELILLDIMMPEMNGIE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R P + V ++ + + ++G GA+ +L KP L+ +R L Q + Sbjct: 70 VLRRLRDTPDTAGIPVIFVTADNSEQSQLSGLELGADDYLTKPVVTAVLKVRVRNLLQRK 129 Query: 122 KSKDENQF 129 + + E + Sbjct: 130 RIERELRL 137 >gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51] gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 237 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V ++ + GF V ++E P+ +++D + G Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDREN-PDVVILDIMLPGQDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 65 SLCRRLRAV---RMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRR 121 Query: 121 QKSKD 125 ++ D Sbjct: 122 SQAAD 126 >gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19] gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 6 str. 870] gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 2 str. 86/8/59] gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 5 str. 513] gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 3 str. 686] gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M163/99/10] gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis B2/94] gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M644/93/1] gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M13/05/1] gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 4 str. 292] gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M292/94/1] gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. Rev.1] gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella neotomae 5K33] gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 3 str. Ether] gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 9 str. C68] gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19] gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] Length = 228 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 >gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 232 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V T+ E + P+ L++D M G+ F Sbjct: 8 RVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARA-FRPDALILDVMMPGMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D V +L E + G GA+ ++ KPF+ E + +R + + Sbjct: 67 GMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAG 126 Query: 123 SKDENQ 128 D+ Q Sbjct: 127 HSDDKQ 132 >gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium] Length = 228 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + V++A S A E EK P+ +V+D + Sbjct: 3 MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L + D + ++ G + GA+ +++KPF+ + L ++ + + Sbjct: 61 GLTVC-RKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 119 Query: 121 QKSKDENQFLDA 132 ++ L + Sbjct: 120 TETLSNPNKLSS 131 >gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 226 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + +L GF V A +A E+ + +++D + G Sbjct: 1 MTRILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGA-DLVLLDLMLPGQP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E I +R + V V L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVIRQIRLN---SQVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVL 116 Query: 119 QMQKSKDEN 127 + Q +E Sbjct: 117 RRQGEGEEL 125 >gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 229 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ V+ A + E +K + P+ +++D M + Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKK-VHPDLIILDIMMPKMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +P + F+ +L + IAG GA+ ++ KP L + + + Sbjct: 65 IEACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILR 124 Query: 120 MQKSKD 125 S D Sbjct: 125 RNSSTD 130 >gi|226953701|ref|ZP_03824165.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244] gi|294651821|ref|ZP_06729115.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus ATCC 19194] gi|226835573|gb|EEH67956.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244] gi|292822285|gb|EFF81194.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus ATCC 19194] Length = 254 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D + L IAG AGA+ +L KPFN L +R + + Q Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139 >gi|255099609|ref|ZP_05328586.1| two-component response regulator [Clostridium difficile QCD-63q42] Length = 224 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+VD + + + F G+ V+ A S +A + K P+ +++D +M Sbjct: 3 NKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN--PDIILLDINMPEIDG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + +L ++ I G RAGA+ +++KPF+ + L + + Sbjct: 61 IEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117 Query: 120 MQKSKD 125 ++ K Sbjct: 118 REQRKS 123 >gi|226327576|ref|ZP_03803094.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198] gi|225204102|gb|EEG86456.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198] Length = 240 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF + A + + + + +V+D + G Sbjct: 6 KVLIVDDDLRLRSLLERYLTEQGFQIRTAANADQ-MDRLLTRESIHLIVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|119486033|ref|ZP_01620095.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] gi|119456808|gb|EAW37936.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] Length = 601 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + + ++ + +D G+ V +A + A + P+ +++D M E Sbjct: 13 ILIVDDTPMNLRLLSTMLSDQGYEVRQAINGKMALTAVQT-CPPSLILLDIMMPDIDGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ P D+ + +L D + + G ++ KPF E + ++ ++ Sbjct: 72 VCSFLKNDPQTADIPIIFLSALDDVLDKVKAFKVGGVDYITKPFEFEEILARVKNQLALK 131 Query: 122 KSKDENQFLDA 132 +K + L++ Sbjct: 132 DAKSKLSTLNS 142 >gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999] Length = 241 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V A + + + + + +V+D + G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQ-MDRLLERENFHLIVLDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + D I G GA+ +L KPFN L + + + Sbjct: 66 SICRRLRQKENT--IPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123 Query: 121 QKSKD 125 + ++ Sbjct: 124 KSAEA 128 >gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|317474497|ref|ZP_07933771.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316909178|gb|EFV30858.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1239 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +H +R+ H + F V A +A E EL P+ +V D M + F Sbjct: 996 ILIVEDNHALREFMVHPLREH-FRVTTADDGQQAWEMM-NELQPDLVVSDVVMPRMDGFE 1053 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L D + G GA+++L KPF+ L + + + + Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIRNR 1113 Query: 122 K 122 + Sbjct: 1114 R 1114 >gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] Length = 224 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + +FG V + ++ + L++D M Sbjct: 1 MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKIL-QDKPFDLLILDIIMPKIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE RQM + V L E ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 60 GLELCRLYRQMFGY-QIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 118 Query: 119 QMQK 122 + K Sbjct: 119 RRNK 122 >gi|119944737|ref|YP_942417.1| response regulator receiver modulated diguanylate cyclase [Psychromonas ingrahamii 37] gi|119863341|gb|ABM02818.1| response regulator receiver modulated diguanylate cyclase [Psychromonas ingrahamii 37] Length = 322 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD KV L + F AT+ +A E + + P+ +++D M + Sbjct: 7 QKVLIVDDIKDNIKVLIDLLKPE-YKTFFATNGEKALELA-QNMSPDIILLDIVMPEMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ P+ D+ V ++ D G GA ++ KP + ++ ++ + Sbjct: 65 FEVCQKLKSNPITCDIPVIFISAMSDIGDETKGLEVGAVDYITKPISPAIVKARVKNHLK 124 Query: 120 MQKSKDENQFL 130 +Q++ E + L Sbjct: 125 LQEAMQELKRL 135 >gi|327405721|ref|YP_004346559.1| integral membrane sensor hybrid histidine kinase [Fluviicola taffensis DSM 16823] gi|327321229|gb|AEA45721.1| integral membrane sensor hybrid histidine kinase [Fluviicola taffensis DSM 16823] Length = 1052 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ +RK D + EA + + E KE LP+ L+ D M + Sbjct: 804 VLVVEDQEQLRKFICECLGDQ-YRYMEAENGIQGVEMA-KEYLPDILISDVMMPEMNGVE 861 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ L + + + L + D E G GA+ +L KPF+ L+ +R + +++ Sbjct: 862 LCGELKNNDLTSHIPIILLTAKSDQEDKEVGLEIGADDYLTKPFSVAELKLRVRNILRLR 921 Query: 122 KSKD 125 ++ Sbjct: 922 QALR 925 >gi|298479786|ref|ZP_06997986.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298274176|gb|EFI15737.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1342 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R++ LF+ + V+EA E E KE+ P+ ++ D M + + Sbjct: 1092 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1149 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L + E I G + GA+ ++ KPFN + L L Sbjct: 1150 EMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLVNG 1209 Query: 121 QKSKDE 126 +K + Sbjct: 1210 RKLLQK 1215 >gi|294805707|ref|ZP_06764586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294447030|gb|EFG15618.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1333 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R++ LF+ + V+EA E E KE+ P+ ++ D M + + Sbjct: 1083 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1140 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L + E I G + GA+ ++ KPFN + L L Sbjct: 1141 EMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLVNG 1200 Query: 121 QKSKDE 126 +K + Sbjct: 1201 RKLLQK 1206 >gi|291568365|dbj|BAI90637.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 598 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + + + G+ V EA A + LP+ +++D M + Sbjct: 14 ILIVDDTPGNLHLLSRILSKKGYKVREAIDGKTALQEV-NNKLPDLILLDIMMPDIDGYA 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P +V + +L D + G ++ KPF + + ++ ++ Sbjct: 73 VCNQLKSEPYTAEVPIIFLSALDDIFDKVKAFEVGGVDYISKPFQFQEVLIRVKNQLTLR 132 Query: 122 KSKDENQFLD 131 +++ + Q L+ Sbjct: 133 RTQQQLQVLN 142 >gi|237714770|ref|ZP_04545251.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262406954|ref|ZP_06083503.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229445095|gb|EEO50886.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262355657|gb|EEZ04748.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1342 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R++ LF+ + V+EA E E KE+ P+ ++ D M + + Sbjct: 1092 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1149 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L + E I G + GA+ ++ KPFN + L L Sbjct: 1150 EMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLVNG 1209 Query: 121 QKSKDE 126 +K + Sbjct: 1210 RKLLQK 1215 >gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01] gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator [Lactobacillus crispatus MV-1A-US] gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1] gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus CTV-05] gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01] gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator [Lactobacillus crispatus MV-1A-US] gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1] gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus CTV-05] Length = 238 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + + E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 DIVKKAE 127 >gi|255305493|ref|ZP_05349665.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 224 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+VD + + + F G+ V+ A S +A + K P+ +++D +M Sbjct: 3 NKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN--PDIILLDINMPEIDG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + +L ++ I G RAGA+ +++KPF+ + L + + Sbjct: 61 IEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117 Query: 120 MQKSKD 125 ++ K Sbjct: 118 REQRKS 123 >gi|307153247|ref|YP_003888631.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983475|gb|ADN15356.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 379 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + ++ + ++ G+ V +A + A + + P+ +++D +M G+ Sbjct: 5 NILVVDDTPDNVRLLATMLSEKGYKVRKALNGQIAINTVQT-VPPDLILLDINMPGMNGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++ D+ V ++ D + + G ++ KPF E + + Sbjct: 64 QVCQALKSDEKTQDIPVIFISALDDVLDKVKAFKVGGVDYITKPFQGEEILVRVENQLTI 123 Query: 120 -MQKSKDENQFLD 131 QK + + + LD Sbjct: 124 CRQKKQLQQEILD 136 >gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA [Mycobacterium abscessus ATCC 19977] gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response transcriptional regulatory protein) [Mycobacterium abscessus] Length = 230 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A +A P+ LV+D M + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALN-VIANDRPDALVLDVMMPKLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D+ + L + +AG AGA+ +L KPF E L MR L + Sbjct: 63 EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 >gi|153868803|ref|ZP_01998544.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074620|gb|EDN71457.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 326 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + V + + G++ ATS EA + KE P +++D M Sbjct: 1 MKKKPTILIVDDNPTNLGVLGSIIAENGYLPGFATSGIEALAYL-KEKHPKLILLDIMMP 59 Query: 58 GVLEF--IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + F +RQ ++ + +L + + E +I G GA ++ KPFN+ L + Sbjct: 60 DMDGFEVCRRLRQNATLAANIPIIFLTAKTEKEDVITGLELGAVDYVTKPFNKNELLTRI 119 Query: 115 RELPQMQKSKDENQ 128 ++Q +K+E + Sbjct: 120 NTHLELQATKEELK 133 >gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630] gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196] gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291] gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08] gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07] gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile] gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196] gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291] gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08] gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L++D + ++ + + V + + KE+ P+ +++D + Sbjct: 3 TKVLVIDDEMHIVELLKFNLEVSNYEVSYSYDGFDGFIKA-KEIKPDLILLDWMLPNISG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E + +R ++ V L + + G GA+ ++ KPF+ + L + + + Sbjct: 62 IEVLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVLR 121 Query: 120 MQKSK---DENQFL 130 +EN L Sbjct: 122 RYNLTSLGEENNIL 135 >gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 47/127 (37%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R G+ EA + +A ++ ++D + G+ Sbjct: 1 MRKVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGID 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + + + L + G GA+ ++ KPF+ L + L + Sbjct: 61 GFEVCRRIRAMDNKIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALFRR 120 Query: 121 QKSKDEN 127 ++E Sbjct: 121 TGGEEEE 127 >gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] Length = 225 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 4/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + +FG V+ A E +K L++D M + Sbjct: 1 MAKILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKND-FQLLILDIIMPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 RQ V L E +++G AGA+ +L+KPF+ + L ++ L Sbjct: 60 GLQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALL 118 Query: 119 QMQKSKD 125 + ++ Sbjct: 119 RRSGNES 125 >gi|298483350|ref|ZP_07001528.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] gi|298270479|gb|EFI12062.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] Length = 1353 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R + F EA + EA E KE + +V D M + Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221 Query: 121 QKSKDE 126 ++ E Sbjct: 1222 RRRMLE 1227 >gi|295087206|emb|CBK68729.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family./Y_Y_Y domain. [Bacteroides xylanisolvens XB1A] Length = 1298 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R + F EA + EA E KE + +V D M + Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1106 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1107 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1166 Query: 121 QKSKDE 126 ++ E Sbjct: 1167 RRRMLE 1172 >gi|294647433|ref|ZP_06725019.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292637224|gb|EFF55656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1298 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R + F EA + EA E KE + +V D M + Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1106 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1107 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1166 Query: 121 QKSKDE 126 ++ E Sbjct: 1167 RRRMLE 1172 >gi|293374016|ref|ZP_06620355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292630977|gb|EFF49616.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1353 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R + F EA + EA E KE + +V D M + Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221 Query: 121 QKSKDE 126 ++ E Sbjct: 1222 RRRMLE 1227 >gi|255037318|ref|YP_003087939.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254950074|gb|ACT94774.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L V+ + + + + V AT EA +F KE + V+D + + Sbjct: 3 KRILYVEDDPNLAFATKDNLEQYDYEVVHATDGAEALDFFGKEH-FDICVLDIMLPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + V + +L + I G + GA+ ++ KPF+ E L+ + + Sbjct: 62 FTLAEKIRASDSQVPILFLSARSMQDDKIKGLKLGADDYITKPFSIEELKLRIDVFLRRS 121 Query: 122 KS 123 K+ Sbjct: 122 KA 123 >gi|254425145|ref|ZP_05038863.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192634|gb|EDX87598.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 223 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A + EA EL P+ ++ D M + Sbjct: 23 KKLLLIDDDPNLILLVKDYLEFRGYQVVTAGNGREALTMLP-ELSPDMIICDVMMPEMDG 81 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ +RQ P + + + +L + + + G GA+ +++KPF E L + + Sbjct: 82 YAFVEQIRQDPSKSWIPILFLSAKGQSQDRVKGLTTGADVYMVKPFEPEELVAQVESSLK 141 Query: 120 M 120 Sbjct: 142 Q 142 >gi|160887460|ref|ZP_02068463.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483] gi|294805850|ref|ZP_06764723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|156107871|gb|EDO09616.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483] gi|294446949|gb|EFG15543.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1353 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R + F EA + EA E KE + +V D M + Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221 Query: 121 QKSKDE 126 ++ E Sbjct: 1222 RRRMLE 1227 >gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+++ + +V + G+ A + + +E + +++D + + Sbjct: 3 NRILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQY-REQQWDLILLDIMLPEMSG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + V L + + E + G GAN ++ KPF E L +R + Sbjct: 62 IDVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALR 119 >gi|17232372|ref|NP_488920.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134017|dbj|BAB76579.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 443 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + ++ GF V A +A E + +P+ +++D M + F Sbjct: 11 ILIVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQI-RVPDLILLDVMMPIMDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ P D+ V ++ D + GA ++ KPF++ + + Q++ Sbjct: 70 TCKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISSHLQLR 129 Query: 122 KSKDENQ 128 + Sbjct: 130 SLNKNLE 136 >gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + + + VF+A EA E EKE + +++D M + Sbjct: 1 MYNVLVVDDEREITDAIEVYLRNQNYNVFKAYDGAEALEIFEKEE-IHLVLMDVMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + V + L + + I G GA+ ++ KPFN L + + Sbjct: 60 GTSATIKIRE-NSTVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLRR 118 >gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V ++ + GF V ++E P+ +++D + G Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDREN-PDVVILDIMLPGQDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 65 SLCRRLRAV---RMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRR 121 Query: 121 QKSKD 125 ++ D Sbjct: 122 SQAAD 126 >gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179] gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ +R++ + V EA A E++ P +++D + G + Sbjct: 4 KILIVEDERAIREMVALYLLKQNYEVIEAEDYQSAVNRLEEQ--PQLILLDWMLPGRSGI 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 FI ++++ + + L E I AGA+ ++ KPF+ + L + L + Sbjct: 62 MFIEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALWRR 121 >gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 240 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLV+ + + R D G+ + A +K+ + + +++D + Sbjct: 5 KKILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQ-VWDAVILDLMLPHVDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRIRQMARY--LPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFR 121 Query: 120 MQKSKDENQFLD 131 Q++ +N L+ Sbjct: 122 RQEAMGQNIRLE 133 >gi|163786994|ref|ZP_02181441.1| two-component system, transcriptional regulatory protein [Flavobacteriales bacterium ALC-1] gi|159876882|gb|EDP70939.1| two-component system, transcriptional regulatory protein [Flavobacteriales bacterium ALC-1] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 2/134 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ + A EA E K N V D M + Sbjct: 1 MKHILLAEDDLDFGNILKQYLEISGYTITWAKDGKEALELF-KNGAYNICVFDVMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L ++ +L E I G + GA+ +++KPF + L + + + Sbjct: 60 GFTLAEKVVDLNPEIPFIFLTARKLKEDKIKGLKLGADDYIVKPFEADELVLRLNNILKR 119 Query: 121 -QKSKDENQFLDAI 133 +K + Q + I Sbjct: 120 TEKIATQLQQSETI 133 >gi|114569827|ref|YP_756507.1| response regulator receiver modulated diguanylate cyclase [Maricaulis maris MCS10] gi|114340289|gb|ABI65569.1| response regulator receiver modulated diguanylate cyclase [Maricaulis maris MCS10] Length = 454 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD ++ F V AT+ +A + E P+ +++D M + Sbjct: 4 RILVVDDQAANVRLLEARLQAEYFEVCTATNGADAIAVAKAE-QPDLILLDVMMPVMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ P + V + E I G AGA+ FL KP + ++ +R L ++ Sbjct: 63 DTCSRIKDDPATRHIPVVMVTALDQREDRIRGLEAGADDFLTKPIDDVSMFARIRSLLRL 122 Query: 121 QKSKDENQFLDA 132 ++ DE ++ ++ Sbjct: 123 KEVLDELRYRES 134 Score = 68.7 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 4/104 (3%) Query: 27 MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMPLGTDVFVYYLLMEV 84 + E EA + L++D + G A +R + + ++ Sbjct: 177 EILETHDPAEAI--IAARNDADLLIVDLTSPGYDGLRLCARIRSDAATRQLPILAVVRPA 234 Query: 85 DFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQ 128 D ++ + G N + +P + L R + ++ D+ + Sbjct: 235 DVQQAVRALDLGVNDIIQRPVDAGELAARSRTQLRRKRYADQLR 278 >gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 230 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ D + +A + + +++D ++ + Sbjct: 1 MKQILIIEDDPEIIQLLEIHLTDMVYTTTKAMDGETGLNLALENDY-DLILLDLTLPIMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V L + + + G GA+ +L KPF+ L ++ + Sbjct: 60 GIEVCKKLRIK---KNTPVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVL 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRSDA 121 >gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 242 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 2/129 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLVD + ++ + + G+ A A + E +++++D + + Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHY-DFILLDIMLPQL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R G + + + + D + GA+ ++ KPF+ L ++ + + Sbjct: 60 DGIEVCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAILR 119 Query: 120 MQKSKDENQ 128 +D Q Sbjct: 120 RTDKEDNRQ 128 >gi|224537021|ref|ZP_03677560.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM 14838] gi|224521329|gb|EEF90434.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM 14838] Length = 1332 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + + + + + AT+ +A E E + + +V D M + Sbjct: 1082 TILLVDDNEEFLLLMKRKLATH-YNILTATNGKKALEIVRSEDV-DLMVSDYMMPEMDGI 1139 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++Q + + V L + E + AGAN +L KPF+ + L + L + Sbjct: 1140 ELCATMKQDINTSHIPVLMLTAKSSVEDQVRCFNAGANGYLTKPFDMKMLNARIDNLMKS 1199 Query: 121 QKSKDENQFLD 131 + + E +D Sbjct: 1200 NQKRQEKFRVD 1210 >gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 239 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++++D + ++ G+ V +A E K+ + ++D + G+ Sbjct: 4 RKIMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEEL-KDKDVDMFLVDIMLPGIDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H+R + V +L + + + G GA+ ++ KPF+ L ++ + + Sbjct: 63 FEFVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFR 122 Query: 120 MQKSKDE 126 + + Sbjct: 123 RMQLSTQ 129 >gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630] gi|115249500|emb|CAJ67315.1| Two-component response regulator [Clostridium difficile] Length = 224 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+VD + + + F G+ V+ A S +A + K P+ +++D +M Sbjct: 3 NKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN--PDIILLDINMPEIDG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + +L ++ I G RAGA+ +++KPF+ + L + + Sbjct: 61 IEVCNRIR---DYISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117 Query: 120 MQKSKD 125 ++ K Sbjct: 118 REQRKS 123 >gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 226 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+D + ++ G V A E + +++D M G+ Sbjct: 3 TRVLLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEAS-AFDAVLLDVMMPGMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V L + D + G GA+ +L KPF+ L +R + + Sbjct: 62 LEVCKRIRAKSR---IPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVLR 118 Query: 120 MQKSKDENQFLDA 132 + L++ Sbjct: 119 RSQPSAVADRLES 131 >gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 231 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V + GF V T+ + +KE P+ +++D + G+ Sbjct: 3 KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ ++ KPF+ L ++ + + Sbjct: 62 EELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241] gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFQVCKTIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117 Query: 119 QMQKSKDE 126 + + DE Sbjct: 118 RRIEVHDE 125 >gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 232 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + R G+ V + EA L P+ +++D + G+ Sbjct: 5 KVLIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNA-LKPDIVLLDVMLPGLDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +++ + + + D + G GA+ +++KPF+ + + ++ + + Sbjct: 64 QVCREIRKK---SNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRR 120 Query: 121 Q-KSKDENQFLD 131 +S E + + Sbjct: 121 TGQSPAEMEVRE 132 >gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ G+ V +A + +A E + + + +++D + G+ Sbjct: 4 KILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEV-DLILLDVMLPGMSGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V L + E ++G GAN ++ KPF E L +R ++Q Sbjct: 63 ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQ 121 >gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 257 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD VR+V G+ V A +A E E P+ +V+D M + F Sbjct: 14 TLLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASE-QPDLVVLDVMMPKLDGF 72 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + Sbjct: 73 AVCRRLRAESA---VPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGR 129 >gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF +F A + E + + P+ ++ D M Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQT-VFPDLIISDVMMPRANGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G AG + ++ KPF+ + L ++ + Sbjct: 75 ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 Query: 121 Q-KSKDENQFLDAI 133 Q + E I Sbjct: 135 QERLLKEAARFADI 148 >gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ I+R+V + G+ V EA +A E + + + +++D + + Sbjct: 1 MNKILVVEDEDILREVIMDYLIEEGYQVLEAADGEQALELFQSHSV-DLVILDIVLPKID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +++ + L D + + G GA+ +L+KP++ L ++ Sbjct: 60 GWSVCRRIRKN---SNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFL 116 Query: 119 QM 120 + Sbjct: 117 EK 118 >gi|315646640|ref|ZP_07899757.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277966|gb|EFU41287.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 225 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 46/125 (36%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V E EA + + ++D + G+ Sbjct: 1 MSKVLILEDEESIRSFIVINLKRNGFDVLETGDGNEALRMLQTTPDIDIALLDVMVPGID 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + + +L +V + + GA+ + KPF+ L ++ L + Sbjct: 61 GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRR 120 Query: 121 QKSKD 125 + Sbjct: 121 VNVQR 125 >gi|316933148|ref|YP_004108130.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315600862|gb|ADU43397.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 240 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ R + V A E E + + +V+D + G Sbjct: 7 SILVVEDDRETRALIAKYLRSNNCNVATAADGRE-MERWIADHRVDLVVLDVMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + L D I G GA+ +L KPFN L +R + + Sbjct: 66 SLCRKIRAN---SQLPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRR 122 Query: 121 QKS 123 Q S Sbjct: 123 QAS 125 >gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ ++ + + G++V A E F + + +++D + + Sbjct: 2 KILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGF-FLGRCYGYDVIILDVMLPKLDGM 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ G + L + E + G +GA+ +L KPF+ + L +R L + + Sbjct: 61 ELLLKLREEGVKTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRRKS 120 Query: 123 SKD 125 Sbjct: 121 ESK 123 >gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] Length = 234 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + ND G+ + E E + +++D + + Sbjct: 3 MKKVLVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNP-FDLIILDIMLPEMD 61 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + + + + + G +GA+ ++ KPF ++ + Sbjct: 62 GIAICQKLRALDNF--TPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIM 119 Query: 119 QMQ 121 + Q Sbjct: 120 RRQ 122 >gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 222 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD R G+MV AT+ EA E EK P+ +V D +M + F Sbjct: 4 TLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKH-QPHLIVTDIAMPEMDGF 62 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR P+ + V +L E+ I G + G +++L KPF E L +R L + Sbjct: 63 ELVKRVRSQPIFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLLER 122 Query: 121 QKSKD 125 + + Sbjct: 123 SQLIE 127 >gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] Length = 232 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++ L+ D + + G+ V +A EA + + +V+D M Sbjct: 1 MKNISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQP-IELVVLDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii] Length = 1425 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGV-- 59 +L VD + + V ++L G+ + +A EA + E+E LP+ +++D M G+ Sbjct: 705 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 764 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+M + + V + + E ++ G AG+N +++KPF R+ + + + Sbjct: 765 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 824 Query: 120 MQ 121 + Sbjct: 825 FR 826 >gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W] gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W] gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117 Query: 119 QMQKSKDE 126 + + DE Sbjct: 118 RRIEVHDE 125 >gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 236 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ R +D G+ V E+ ++ D + GV Sbjct: 5 KRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVL-DLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V + I G GA+ +L KPF+ L +R L + Sbjct: 64 LEICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRS 123 Query: 122 KSKDENQFLDA 132 ++ N L+A Sbjct: 124 EALARNAKLEA 134 >gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185] gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185] Length = 231 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R++ GF V A + E + + V+D + + F Sbjct: 7 RILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQE-FDLAVLDVMLPDMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G ++ + +L + + G G + ++ KPF+ E + +R + + K Sbjct: 66 AVTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTK 125 Query: 123 SKDEN 127 + D + Sbjct: 126 ADDSD 130 >gi|298480391|ref|ZP_06998589.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298273672|gb|EFI15235.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1511 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F+ + V EA E K LP+ ++ D M +E Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1295 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355 Query: 122 KSKD 125 K + Sbjct: 1356 KLQS 1359 >gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 237 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|153954118|ref|YP_001394883.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854730|ref|YP_002471852.1| hypothetical protein CKR_1387 [Clostridium kluyveri NBRC 12016] gi|146346999|gb|EDK33535.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568454|dbj|BAH06438.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 232 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + V R G+ V A + EA + EK + P +V+D + + Sbjct: 5 KKILVVDDEQKIVDVIRAYLEKAGYEVHSAYNGTEAVKLFEK-ISPALIVLDLMLPDISG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L +VD + ++ G GA+ ++ KPF+ + L + + Sbjct: 64 EDICKMLRKKSR---VPIIMLTAKVDEKTVLEGFNIGADDYVTKPFSPKQLVARVMAHLR 120 Query: 120 MQKSKD 125 + + Sbjct: 121 RTEEEA 126 >gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp. 3_1_syn3] gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp. 3_1_syn3] Length = 226 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R++ R GF V EA + E + LP +++D + + Sbjct: 4 QHILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRH-LPCLIILDVMLPALDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + + + V L + + G GA+ +++KPF+ L ++ + + Sbjct: 63 FEVSRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAILR 122 Query: 120 MQKSKDENQFLD 131 E+ L+ Sbjct: 123 RGGRVAESALLE 134 >gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571] gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571] Length = 238 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + + E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 DIVKKAE 127 >gi|317473767|ref|ZP_07933048.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316910024|gb|EFV31697.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1359 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R+ R + V ++ A + KE P+ ++ D M + Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSAL-YIIKEYFPDLIISDIMMPEMRGD 1153 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E V+ + + + L + +I G + GA+ +++KPFN LR + L Sbjct: 1154 ELCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLAN 1213 Query: 121 QKSKD 125 + Sbjct: 1214 RALLR 1218 >gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 217 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 7/132 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ +RK+ + GF V EA+ EA E + + + +++D + Sbjct: 1 MK-ILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKF-QPSMYSVVILDVMLPQKD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ D V L + + I G GA+ +++KP + + + ++ + Sbjct: 59 GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115 Query: 119 QMQKSKDENQFL 130 + K + N L Sbjct: 116 KRTKKPNSNDIL 127 >gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 236 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + A + PN +++D + G+ Sbjct: 5 QRILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPV-FKPNLILLDLMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREIR---TTSQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQKS 123 ++ Sbjct: 121 RYQA 124 >gi|288959997|ref|YP_003450337.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288912305|dbj|BAI73793.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1522 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL D + +R L G+ V A + P+ ++ D M + F Sbjct: 742 TVLLADDNADMRGYVERLLAGAGYRVVAVEDGRSAVTAVRA-IRPDLVLSDVMMPHLDGF 800 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R+ P ++ + L E I G +AGA+ ++ KPF+ L + ++ Sbjct: 801 GVIDALRRNPDTRELPIILLSARAGEESAIDGFQAGADDYVAKPFSARELIARVEGTLRL 860 Query: 121 QKSKDE 126 K + E Sbjct: 861 AKLRRE 866 Score = 87.6 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 ++L+V+ VR + D + V +A A E + + L D M G L Sbjct: 1266 TVLVVEDDEEVRHTVVAMLTDLDYRVLQARDAQSALAILESGVPIDLLFTDVVMPGPLRS 1325 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118 + + ++ V + + G G L KP++RE L +R++ Sbjct: 1326 PDLAR--KAQERFPNLAVLFTSGYTQNAIVHGGRLDPGV-ELLSKPYSREILARKIRQVL 1382 Query: 119 QMQKSKD 125 +K + Sbjct: 1383 SGRKPER 1389 Score = 78.3 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 44/116 (37%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ ++R + + G V EA SV EA E + L D ++ Sbjct: 1405 TILLVEDDALIRMAVADMVAELGHRVLEAGSVREALHIAGSEHAIDLLFTDLTLPDGRGE 1464 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + V + + +++ A + G L KP++ L A+ Sbjct: 1465 DLAAELVRRMPGLPVVFASGRMGPDELDAASFGGKTVHLRKPYDLAGLERAILAAL 1520 >gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] Length = 231 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V + GF V T+ + +KE P+ +++D + G+ Sbjct: 3 KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ +L KPF+ L ++ + + Sbjct: 62 EELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 235 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ + GF V A A + P+ +V+D M G+ Sbjct: 11 RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRT-FHPDVMVLDIMMPGMDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ- 121 R G D +L E +AG G + ++ KPF+ E + + L + Sbjct: 70 GLLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRSG 129 Query: 122 -KSKDENQFLD 131 K+E L Sbjct: 130 FGQKEEITRLK 140 >gi|153871894|ref|ZP_02000947.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152071639|gb|EDN69052.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 407 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + V + G V A + + + P+ +++D M G+ F Sbjct: 19 TILIIEDNPNNLGVIVDYLEEAGLKVVVARNGEMGLKRAQFA-QPDIILLDVMMPGIDGF 77 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ V ++ D E + G G ++ KP E + + ++ Sbjct: 78 ETCRRLKADAKTQEIPVIFMTALDDPEDKLKGFGVGGVDYITKPIQHEEVLARVTTHLRI 137 Query: 121 QKS-KDENQFLDAI 133 + N ++ + Sbjct: 138 RALTLKLNAKIEEL 151 >gi|148242058|ref|YP_001227215.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147850368|emb|CAK27862.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 242 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++ +VD +R++ ++ G+ V + E + P+ +V+D M G Sbjct: 5 QTIWVVDDDSELRQLLSTYLSEQGYEVRTLNDGKQFTARLEFQ-RPDLVVLDLMMPGDDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G D+ V L + I G GA+ +L KPF L + + + + Sbjct: 64 LTILRRLRDGGDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFMPRELSARIEAVLRRR 123 Query: 122 KS 123 + Sbjct: 124 GA 125 >gi|83945515|ref|ZP_00957862.1| stalked-cell differentiation controlling protein [Oceanicaulis alexandrii HTCC2633] gi|83851091|gb|EAP88949.1| stalked-cell differentiation controlling protein [Oceanicaulis alexandrii HTCC2633] Length = 450 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R++ F V A + E P+ +++D M G+ F Sbjct: 4 RILVVDDIETNRRLLEARLTAEYFDVLMAQDGPTCLDLARCEK-PDVILLDIMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + I G AGA+ FL KP + L +R L ++ Sbjct: 63 ETCRRLKADPETRHIPVVMVTALDQRSDRIRGLEAGADEFLTKPVDDVALFARVRSLLRL 122 Query: 121 QKSKDENQFLDA 132 DE + ++ Sbjct: 123 TSVMDELRQRES 134 Score = 55.2 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 11/123 (8%) Query: 13 VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMP 70 + + + G+ A + +++D S A +R Sbjct: 164 IARALPATLDAHGY-----GDPKIAISQARHA---DLVIVDLSSPRFDGLRLCARIRSDV 215 Query: 71 LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQ-F 129 V + ++ E+D M+ G N + +P + L + ++ D + Sbjct: 216 DTRQVPLLGVVDEMDKRTMVRALDLGVNDVISRPLDPGELSARSATQLKRKRYADALRDR 275 Query: 130 LDA 132 LD Sbjct: 276 LDE 278 >gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 237 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD + + + G+ V A EA + E+E P+ +++D + Sbjct: 4 KTILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEE-QPDLMLLDIMLPKRDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 MEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMR 119 Query: 120 MQKSKDENQFLDA 132 + + A Sbjct: 120 RLNVPAQIEEAQA 132 >gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] Length = 233 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ VF A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEE-PDIVLLDIMLPGNDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 S+ + Sbjct: 119 RHYSQPAQE 127 >gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 219 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLVD + + + G+ V A + EA E KE +P+ ++ D M + Sbjct: 13 KHLLLVDDDPNLVLLVKDYLEFQGYDVTTAENGKEALEILTKE-IPDMIICDVMMPEMDG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I VRQ + V V +L + + + G GA+ +++KPF E L + + Sbjct: 72 YSLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLK 131 Query: 120 M 120 Sbjct: 132 Q 132 >gi|328949557|ref|YP_004366892.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328449881|gb|AEB10782.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 222 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + +V GF AT A E P+ +++D + G LE Sbjct: 6 ILIVEDEPRLAEVLERYLRREGFRTERATDGRRALELWRA-TRPDLILLDLMVPGPDGLE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ +DV + + + + G GA+ ++ KPF+ + ++ + + Sbjct: 65 ITRTLRK---TSDVPIIMVTARAEETDRLVGLELGADDYVTKPFSPREVVARVKAVLRRA 121 Query: 122 KSK 124 K + Sbjct: 122 KGR 124 >gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1] gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94] gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94] gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94] gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGISGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 >gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E K + +++D + + Sbjct: 3 RKILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMV-KSCAYDIILLDLMLPKMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +DV + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQQIRE---FSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILR 118 Query: 120 MQK 122 + Sbjct: 119 RNE 121 >gi|224370278|ref|YP_002604442.1| two-component response regulator [Desulfobacterium autotrophicum HRM2] gi|223692995|gb|ACN16278.1| two-component response regulator [Desulfobacterium autotrophicum HRM2] Length = 244 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + + N G+ V A E ++ P+ +++D + + Sbjct: 7 KRILVIEDEQHIAEGIKLNLNMQGYGVRIAPDGVAGLELW-RQWHPDLIILDIMLPMIDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + V L + + E + G R G + +L KPF+ + + L + Sbjct: 66 LTVLKKIRSEDEKLPVLILSAKGNAEDRVRGLRCGVDDYLAKPFDLDEFLLRVDRLLARK 125 >gi|209527246|ref|ZP_03275757.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209492313|gb|EDZ92657.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 443 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G + AT+ EA E + P+ +++D M + F Sbjct: 8 TILIVEDNRSNLSLIADTIANVGCKIAIATNGIEAIAQAEA-IQPDLILLDIVMPKMDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q P ++ V + D + G GA ++ KPF E + + ++ Sbjct: 67 ETCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHLKI 126 Query: 121 QKSKDEN 127 + + Sbjct: 127 RYLTQQL 133 >gi|162149578|ref|YP_001604039.1| phosphate regulon transcriptional regulatory protein phoB [Gluconacetobacter diazotrophicus PAl 5] gi|161788155|emb|CAP57760.1| putative phosphate regulon transcriptional regulatory protein phoB [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R+ G+ V A +A P+ +V+D + G L+ Sbjct: 16 ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAV-RRPDLMVLDWMLPGLSGLD 74 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + L I G GA+ ++ KP + E L+ +R L + Sbjct: 75 VCRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA 134 Query: 122 KSKDEN 127 ++ Sbjct: 135 PPAEQM 140 >gi|186685422|ref|YP_001868618.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467874|gb|ACC83675.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 462 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 57/137 (41%), Gaps = 7/137 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + ++ + GF V +A + A C+ +LP+ +++D +M G+ Sbjct: 11 KNILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQM-VLPDVILLDINMPGMDG 69 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +V V ++ D + G ++ KPF+ + + Sbjct: 70 YQVCQQLKADDKTCEVPVIFISALDDVVDKVKAFDVGGVDYIAKPFHGAEVVLRIENQIN 129 Query: 120 MQ----KSKDENQFLDA 132 ++ + +++N L Sbjct: 130 LRLLQVRLQEKNFLLQE 146 >gi|330890495|gb|EGH23156.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. mori str. 301020] Length = 237 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 3/120 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 +LVD +R++ + GF V + E + L++D + F Sbjct: 1 MLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEEPSDLLILDVMLPDEDGFSL 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +RQ P V V L D + G GA+ +L KPF+ L+ ++ L + + Sbjct: 60 CKWIRQHPRQPHVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRAQ 119 >gi|320332983|ref|YP_004169694.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754272|gb|ADV66029.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 249 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ GF V A + E + + +V+D + G F Sbjct: 31 RILIVEDDPGIREYLSLGLRYEGFDVRSAATGGEGLTQYAEHGA-DLVVLDVMLPGPDGF 89 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A +R + V V L + I G +GA+ +L KPF L +R + + + Sbjct: 90 -AFLRDLRARDAVPVVMLTARDSVDDRILGLESGADDYLTKPFAFGELVARIRTVLRRAR 148 >gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ L GF A + A E ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|262280534|ref|ZP_06058318.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262258312|gb|EEY77046.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 236 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60 +L+VD +R++ + GF +A +A + + P +++D + G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ ++ V L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 121 QKSKDENQFLDA 132 + + +DA Sbjct: 125 ANALSGEKMIDA 136 >gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193] gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193] Length = 224 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + R G+ V A EA +E P+++V+D + Sbjct: 2 KILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASRED-PDFIVLDIGLPELDGF 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ V + +L D I G GA+ ++ KPF+ L +R + + Sbjct: 61 EVCRRIRQRSE---VPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKR 117 Query: 121 QKSKD 125 + Sbjct: 118 SQKAQ 122 >gi|291570098|dbj|BAI92370.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 443 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G + AT+ EA E + P+ +++D M + F Sbjct: 8 TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEA-IQPDLILLDIVMPKMDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q P ++ V + D + G GA ++ KPF E + + ++ Sbjct: 67 ETCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHLKI 126 Query: 121 QKSKDEN 127 + + Sbjct: 127 RYLTQQL 133 >gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD + ++ F V + +A E +KE LP+ +++D + G Sbjct: 1 MKTGKVLIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKE-LPDIILLDIMIPG 58 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F +R + + L ++ + + G + GA+ ++ KPF L + Sbjct: 59 IDGFEVCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDA 118 Query: 117 LPQM 120 + + Sbjct: 119 VLRR 122 >gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 234 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +++V+ + ++ ++ G+ V A EA E E + ++D + + Sbjct: 4 KIIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEA-ELLLAEQSYDLAILDWMIPKISGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R ++ + L + + G GA+ ++ KPF+ + L ++ L + Sbjct: 63 ELCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALLRR 122 Query: 121 QKSKDENQFL 130 + + L Sbjct: 123 AAPERMSDIL 132 >gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 219 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + + V + + + +++D + Sbjct: 1 MTQILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYY-DLIILDLMLPSIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + D +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPQKD 123 >gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] Length = 227 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + G+ V EA EA E E +++D M + Sbjct: 5 KILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYDEKDIALIILDVMMPRMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VRQ V + L + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREVRQSSK---VPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRR 121 >gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 224 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ + V + + V A + EF E + +++D + + Sbjct: 2 RILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEA-FSYDLILLDVMLPKLNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ G + V L + E + G GA+ +++KPF+ L +R L + Sbjct: 61 GLCQRIRQ--SGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRR 118 >gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905] gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905] Length = 237 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD + + + G+ V A EA + E+E P+ +++D + Sbjct: 3 KTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEE-QPDLMLLDIMLPKRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREIRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|189464923|ref|ZP_03013708.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM 17393] gi|189437197|gb|EDV06182.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM 17393] Length = 1341 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + + V AT+ EA E ++ N +V D M + F Sbjct: 1096 TVLVVEDNPEMLAFIERQLSSQ-YAVVTATNGREALEALDRN-FVNLVVSDVVMPLMDGF 1153 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + I G GA+S++ KPF+ E L + L Sbjct: 1154 ELCKTIKSNVGYSHIPVILLTAKTNIQSKIEGMELGADSYIEKPFSPEYLLAVVSNLINN 1213 Query: 121 QKSKDEN 127 ++ + Sbjct: 1214 REKLRRD 1220 >gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] Length = 236 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ A +A P+ +++D M + Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKA-TSFHPDVVILDVQMPRMDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R ++ V +L + G RAGA+ ++ KPF+ + + + L + Sbjct: 71 ETLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAG 130 Query: 123 SKDE 126 + Sbjct: 131 RTQQ 134 >gi|119513098|ref|ZP_01632151.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119462232|gb|EAW43216.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 378 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L VD + + + + G+ + A + EK P+ +++D M G Sbjct: 11 RILAVDDTRDNLILVQTILESEGYEIDLVADGLTALQQIEKSP-PDLILLDVMMPGIDGY 69 Query: 61 EFIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ P + + + + ++ G AGA+ F+ KPF+ + L +R L Sbjct: 70 EVTRRIRKNPQFNASYIPILLITAF-HQSSVVEGLDAGADDFIRKPFDTDELLARVRSLL 128 Query: 119 QMQKSKDENQFLD 131 +++ S DE + + Sbjct: 129 RLKHSLDEQKKMA 141 >gi|333031401|ref|ZP_08459462.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332741998|gb|EGJ72480.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 3/129 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + G +V A S EA + E +++D M+G+ Sbjct: 1 MKPKILIVDDEPDICEILTFNLVNEGLIVDYAYSAEEALQKLSPEHS--LILLDIMMDGM 58 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + G ++ + +L + M+ G GA+ ++ KPF+ + + ++ + + Sbjct: 59 SGYKMAEKLRSEGNEIPIIFLTAKRSENDMLTGFSVGADDYISKPFSIKEVIARVKAILK 118 Query: 120 MQKSKDENQ 128 K K +N+ Sbjct: 119 RAKLKKQNE 127 >gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 230 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 8/133 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + G+ V + +A K + +++D + + F Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRI-KSGNFDMVLLDVMLPKIDGFS 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 VR+ +DV + + + D + G GA+ ++ KPF L +R + Sbjct: 65 VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRT 121 Query: 121 -QKSKDENQFLDA 132 Q S + + L A Sbjct: 122 AQSSAQDGKVLKA 134 >gi|289640898|ref|ZP_06473068.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289509213|gb|EFD30142.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 267 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R + G+ V ATS A P+ +++D + + Sbjct: 1 MTRVLIVDDDTQILRALRITLHARGYEVMTATSGRHAL-AATTSGRPDIILLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V L + AGA+ ++ KPF + L +R + + Sbjct: 60 G-AEVIHALRSWTTTPVIVLSGRGGSTDKVGALDAGADDYVTKPFRVDELLARLRAVARR 118 Query: 121 QKSKDE 126 S E Sbjct: 119 TLSATE 124 >gi|262195489|ref|YP_003266698.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262078836|gb|ACY14805.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 406 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ D V A S + E +E P+ +++D + G+ Sbjct: 21 QRVLVVDDDPANLRLVEAYLADLDVEVSTALSGEQGVEQAREEP-PHLVLLDIMLPGIDG 79 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R P DV V ++ D + + G G ++ KP +R L +R + Sbjct: 80 LEACRRIRAAPRTRDVPVIFMTALSDHARKLEGFGVGGVDYVTKPLDRPELLARVRTHLR 139 Query: 120 MQKSKDENQF 129 +QK Q Sbjct: 140 IQKMHASLQR 149 >gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] Length = 238 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + ++V A EA E+ N +++D M + Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKY-NLIILDLMMPKVDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R T++ + L + I G GA+ ++ KPF+ + ++ L + Sbjct: 64 EVCRRLRNK---TNIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRR 120 >gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 245 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V + A +++++D + G+ Sbjct: 8 KKILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKY-DFILLDLMLPGMDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + L I G GA+ +L KPF+ + ++ + + Sbjct: 67 IEITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRR 125 >gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF] gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter baumannii] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + + GF V +A ++ PN +++D + + Sbjct: 1 MKHIMLVEDEVELAHLVCDYLEAAGFEVSMFHDGQDAYTSF-QQRKPNLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQF 129 + + K E + Sbjct: 117 RRLERKAEPEQ 127 >gi|196048307|ref|ZP_03115484.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus 03BB108] gi|196021044|gb|EDX59774.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus 03BB108] Length = 230 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA E + ++D + G+ Sbjct: 1 MQTILVLEDELTIRSFIVLNLQRAGFNVLEASTGEEALEIFRTHQAIDIALLDVMLPGID 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + V L V +++I G GA+ ++ KPF+ L ++ L + Sbjct: 61 GFEVCRKIRDFNDQLGVIMLTACVQNKEIIQGLTMGADDYIEKPFSPTELIARIKSLLRR 120 Query: 121 QKS 123 Sbjct: 121 INL 123 >gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 227 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD R G+ V A EA + P+ +V D M + Sbjct: 4 TILVVDDDLGTRLSISDYLELSGYSVVTANDGQEALAMVD-NYHPDLIVTDIIMPRMNGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + VRQ P + V L ++ I G ++G + +L KPF E L A+R L + Sbjct: 63 ELVRRVRQQPAFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLER 122 Query: 121 QKSKDENQFLD 131 + L Sbjct: 123 SQIIQSEYRLS 133 >gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + E+ + +++D M + F Sbjct: 4 KILIVDDDPHIRELVSIFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|323343003|ref|ZP_08083234.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463067|gb|EFY08262.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 252 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + + ++++EA + EA E +E + +++D M + Sbjct: 17 MAKILICDDERDIVNALKIYLSQEDYIIYEAFNGVEALEILVQEH-IDLVLLDVMMPVMD 75 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T + + L + + I G GA+ ++ KPFN + ++ + Sbjct: 76 GL-EAMMHIRKTTTIPIILLTAKGEDTDKILGLNVGADDYITKPFNPMEVIARVKSQLRR 134 >gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA + P+ LV+D M + Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMI-ASDRPDALVLDVMMPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L MR L + K Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 123 SKDENQ 128 D + Sbjct: 121 PDDTAE 126 >gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + + V A + EA + N +++D M + Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKY-NLIILDLMMPKVDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R T++ + L + I G GA+ ++ KPF+ + ++ L + Sbjct: 64 EVCRRLRNK---TNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120 >gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 223 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALAKWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K + Sbjct: 116 RRVKKAE 122 >gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] Length = 236 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + G++ +A + EA ++ + + +++D M + Sbjct: 5 KTVLIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNV-DLVILDVMMPKLNG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 IDTCLKIREE-REMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRR 121 >gi|50086362|ref|YP_047872.1| osmolarity response regulator [Acinetobacter sp. ADP1] gi|49532338|emb|CAG70050.1| two-component response regulator [Acinetobacter sp. ADP1] Length = 254 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D + L IAG AGA+ +L KPFN L +R + + Q Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139 >gi|54303252|ref|YP_133245.1| putative two-component response regulator [Photobacterium profundum SS9] gi|46916680|emb|CAG23445.1| putative two-component response regulator [Photobacterium profundum SS9] Length = 235 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R GF V A + + E P+ +++D M G Sbjct: 4 KQILVVDDNFELRDALTEYLGRAGFSVIGAENGVAMWKLLESNT-PDLIILDIMMPGDDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R +D + L + +AG GA+ ++ K F+ L ++ + + Sbjct: 63 FTLCQKLR---RTSDTPIIMLTAVTEETDRVAGLEMGADDYITKSFSPRELLARIKTILR 119 Query: 120 MQKSKDENQF 129 S Q Sbjct: 120 RSHSSHSTQL 129 >gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 283 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A ++ P+ +V+D + + Sbjct: 57 RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAV-RAARDFRPDAVVLDVMLPDMDGL 115 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 116 AVLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 175 Query: 123 S 123 S Sbjct: 176 S 176 >gi|162448476|ref|YP_001610843.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Sorangium cellulosum 'So ce 56'] gi|161159058|emb|CAN90363.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Sorangium cellulosum 'So ce 56'] Length = 1143 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 4/119 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + +R+ + + + V EA + P ++ D M + F Sbjct: 648 RVLLADDNADMREYVGRVLRER-WTVEAVADGAEALASARRSP-PALVLTDVMMPNLDGF 705 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R V V L E + G AGA+ +L KPF+ L + Q Sbjct: 706 GLLRALRADERTRAVPVVMLSARAGEESRVEGLEAGADDYLPKPFSARELVARVATHLQ 764 >gi|226953341|ref|ZP_03823805.1| positive response regulator for the pho regulon, autophosphorylate and phosphorylate sensor [Acinetobacter sp. ATCC 27244] gi|294651956|ref|ZP_06729245.1| phosphate regulon transcriptional regulatory protein [Acinetobacter haemolyticus ATCC 19194] gi|226835879|gb|EEH68262.1| positive response regulator for the pho regulon, autophosphorylate and phosphorylate sensor [Acinetobacter sp. ATCC 27244] gi|292822188|gb|EFF81102.1| phosphate regulon transcriptional regulatory protein [Acinetobacter haemolyticus ATCC 19194] Length = 236 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60 +L+VD +R++ + GF +A +A + + P +++D + G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ ++ V L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 121 QKSKDENQFLDA 132 + + +DA Sbjct: 125 ANALSGEKVIDA 136 >gi|160885580|ref|ZP_02066583.1| hypothetical protein BACOVA_03582 [Bacteroides ovatus ATCC 8483] gi|156109202|gb|EDO10947.1| hypothetical protein BACOVA_03582 [Bacteroides ovatus ATCC 8483] Length = 1459 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 60/128 (46%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ ++ +R ++ ++ + V EAT+ E ++ ++ +P+ ++ D M + Sbjct: 1196 TSILIVEDNNELRHFLWNILSET-YTVLEATNGKEGLKYA-QQYIPDLIISDVMMPVMDG 1253 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1254 LDMVKAIKADHDTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTRILSLLR 1313 Query: 120 MQKSKDEN 127 +K + Sbjct: 1314 QRKQLQDL 1321 >gi|154492762|ref|ZP_02032388.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184] gi|154087067|gb|EDN86112.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184] Length = 1346 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLL + + VR+ + F V EA + +A E LP+ +V D M L Sbjct: 1092 TLLLAEDNPDVRRYICKHLEPY-FDVLEAENGVDAFNKI-AETLPDLVVSDIMMPKKDGL 1149 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + ++Q + V + + + G + GA+ +++KPFN E L +R + Sbjct: 1150 QLCSEIKQDLRTGHIPVIIITAKSMVMHIKEGFQCGADDYIVKPFNMEVLLCRIRNILAS 1209 Query: 121 QKSKDEN 127 ++ E Sbjct: 1210 RERLKEL 1216 >gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 245 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ ++ + + F GF V A+ E + P+ +++D + G+ Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTH-PDLIILDVMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + T V + L D IAG GA +++KPF+ L +R + + Sbjct: 60 GFSVC-RAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRW 118 Query: 121 QKSKDE 126 + + + Sbjct: 119 NERQRQ 124 >gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A +A + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKDFDLIILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|325298638|ref|YP_004258555.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324318191|gb|ADY36082.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1353 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + + F D + V A + E E E +P+ +V D M + Sbjct: 1092 ILIVEDNKDILDYIAESFTDL-YEVKTALNGKEGMEIAL-ECIPDIIVSDIMMPVMDGIT 1149 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L + G ++GA+S+L KPF+ L + L + Sbjct: 1150 LCKQLKNDIRTSHIPIILLTAKDTLSDKEEGYQSGADSYLTKPFSASLLHSRINNLLAQR 1209 Query: 122 K 122 + Sbjct: 1210 R 1210 >gi|325273777|ref|ZP_08139968.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101090|gb|EGB98745.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 210 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +R++ + + GF V + +++D + Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGA-GFRRALDSSPCDLVILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ P V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FSLCRWVRQHPRRARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARLKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAE 127 >gi|260642573|ref|ZP_05416441.2| two-component system sensor histidine kinase/response [Bacteroides finegoldii DSM 17565] gi|260621480|gb|EEX44351.1| two-component system sensor histidine kinase/response [Bacteroides finegoldii DSM 17565] Length = 1353 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R + F + EA + EA E + + + +V D M + Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNILEAGNGEEALEKLKGNEV-DIIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIPTCHIPVIMLSAKSETKDQMEGLQMGADDYIPKPFSLSILTTKIQNMMRT 1221 Query: 121 QKSKDE 126 ++ E Sbjct: 1222 RRRMLE 1227 >gi|220909913|ref|YP_002485224.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219866524|gb|ACL46863.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 406 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+ D + R + + + G+ + A EA E P +++D M + Sbjct: 14 KILVADDAPDNRFLIEAILEEQGYALDFAEDGREALTKIEAAP-PQLVLLDVMMPEMDGY 72 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VRQ P + + + + + AG GA+ F+ KP E L +R L ++ Sbjct: 73 EVTRRVRQNPNLSYIPILLITAYEQV-TVAAGLDTGADDFIRKPLEPEELSARVRSLLRL 131 Query: 121 QKSKDENQFLD 131 + S DE + Sbjct: 132 KHSIDERDRIA 142 >gi|91772718|ref|YP_565410.1| response regulator receiver [Methanococcoides burtonii DSM 6242] gi|91711733|gb|ABE51660.1| PhoP response regulator receiver [Methanococcoides burtonii DSM 6242] Length = 170 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + G+ V EA + A + K +P+ +++D M + F Sbjct: 49 KVLIVDDEPDAVIATKRALEADGYNVIEANNGTMAFDAL-KSDIPDVILLDVMMPDMDGF 107 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ PL ++ V L + + + G GA+ ++ KPFN + L+ ++ + + Sbjct: 108 EVCRRLKEEPLYENIPVIMLTAKGEINDKVEGLDIGADDYMTKPFNLKELKARIKTVLRR 167 Query: 121 QK 122 + Sbjct: 168 TQ 169 >gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides fragilis NCTC 9343] gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides fragilis NCTC 9343] gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] Length = 224 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LLV+ + +FG V A E +E + L++D M + Sbjct: 1 MAKILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQE-AFDLLILDIIMPKMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE RQ V L E ++ G +GA+ +L+KPF+ + L ++ + Sbjct: 60 GLELCRLYRQQYGYL-TPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAIL 118 Query: 119 QMQKSKDENQF 129 + + Q Sbjct: 119 RRGREDSVQQL 129 >gi|259417672|ref|ZP_05741591.1| response regulator receiver modulated serine phosphatase [Silicibacter sp. TrichCH4B] gi|259346578|gb|EEW58392.1| response regulator receiver modulated serine phosphatase [Silicibacter sp. TrichCH4B] Length = 423 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S + R++ +GF V EA EA + C + P+ ++ D M G+ Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFDVVEAEGGEEAMDICRADP-PDLILSDWMMPGMNG 77 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 F R + L + + ++ G AGA+ FL KP + + LR + Sbjct: 78 IDFCRAFRAESHEAYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 137 Query: 117 LPQMQKSKDENQFL 130 + +MQ+ E + Sbjct: 138 ILRMQRELFEKNRI 151 >gi|255320247|ref|ZP_05361432.1| protein PetR [Acinetobacter radioresistens SK82] gi|262380462|ref|ZP_06073616.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255302686|gb|EET81918.1| protein PetR [Acinetobacter radioresistens SK82] gi|262297908|gb|EEY85823.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 254 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D+ + L IAG AGA+ +L KPFN L +R + + Q Sbjct: 81 SICRRLRQSNIDIPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139 >gi|251794919|ref|YP_003009650.1| signal transduction histidine kinase, LytS [Paenibacillus sp. JDR-2] gi|247542545|gb|ACS99563.1| signal transduction histidine kinase, LytS [Paenibacillus sp. JDR-2] Length = 1112 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEG--V 59 +LLVD KV + LF + VF A + +A + ++ + +++D M G Sbjct: 772 KILLVDDDSSNIKVLQELFPSSRYHVFVAYNGEDALKLIKQHRGELSLVLLDVMMPGLSG 831 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ + V L + + G AGAN FL+KPF+ + L ++ L Q Sbjct: 832 YEVCRRIREENPLYQLPVLLLTVRNSPADIALGFEAGANDFLVKPFSGKELLARVQTLLQ 891 Query: 120 MQKSKDENQFLDAI 133 M+++ ++ ++ + Sbjct: 892 MKEAVEQAIRMETL 905 >gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA E +++D M G+ Sbjct: 1 MK-ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ + + + L + + I G +GA+ ++ KPFN + ++ L + Sbjct: 60 G-IEVIKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QK 122 + Sbjct: 119 TE 120 >gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T17] Length = 289 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G V A + + +V+D + G+ F Sbjct: 2 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L IAG GA+ +L KPFN + L +R L + Sbjct: 61 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 118 >gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 219 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLVD + + + G+ V A + EA E K+ +P+ ++ D M + Sbjct: 13 KHLLLVDDDPNLVLLVKDYLEFQGYEVTTAENGKEALEVLTKQ-IPDMIICDVMMPEMDG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I VRQ + V V +L + + + G GA+ +++KPF E L + + Sbjct: 72 YSLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLK 131 Query: 120 M 120 Sbjct: 132 Q 132 >gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+++ + +V + G+ A + + +E + +++D + + Sbjct: 3 NRILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQY-REEQWDLILLDIMLPEMSG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + V L + + E + G GAN ++ KPF E L +R + Sbjct: 62 IDVLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALR 119 >gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 225 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +RK+ + G+ V EA E E + + +++D M + Sbjct: 5 MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTY-DIVILDIMMPKID 63 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L D + G + +++KPFN + L ++ L Sbjct: 64 GWSVCRKIREE---SQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALL 120 Query: 119 QM 120 + Sbjct: 121 RR 122 >gi|299149007|ref|ZP_07042069.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298513768|gb|EFI37655.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1353 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R + F EA + EA E + + + +V D M + Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEV-DIIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221 Query: 121 QKSKDE 126 ++ E Sbjct: 1222 RRRMLE 1227 >gi|284054063|ref|ZP_06384273.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 232 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + I R + G+ V A++ EA + L + +++D M + Sbjct: 8 VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPL-DLVLLDIMMPQMNGYQ 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ + V + D + ++ GA +L KPFN LR + + + Sbjct: 67 VLESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACLEKK 126 Query: 122 KSKDENQ 128 + +D+ Q Sbjct: 127 RLRDQEQ 133 >gi|268325500|emb|CBH39088.1| conserved hypothetical protein containing response regulator receiver domain [uncultured archaeon] Length = 170 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + F V EA EA E E +P+ +++D + Sbjct: 48 TKILIVDDELDTLLPLKRALEMEDFNVVEAQDGIEALEKVRSE-IPDLVLLDLMLPKING 106 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + + L + + + G GA+ ++ KPFN + L+ ++ + + Sbjct: 107 FEVCQRLKHDEATSYIPIIMLTAKGETSDKVEGIEIGADDYVTKPFNLDELKARIKAVLR 166 Query: 120 M 120 Sbjct: 167 R 167 >gi|260171277|ref|ZP_05757689.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|315919587|ref|ZP_07915827.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|313693462|gb|EFS30297.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] Length = 1353 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R + F EA + EA E + + + +V D M + Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEV-DIIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221 Query: 121 QKSKDE 126 ++ E Sbjct: 1222 RRRMLE 1227 >gi|237722583|ref|ZP_04553064.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448393|gb|EEO54184.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1353 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R + F EA + EA E + + + +V D M + Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEV-DIIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221 Query: 121 QKSKDE 126 ++ E Sbjct: 1222 RRRMLE 1227 >gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803] gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803] Length = 225 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ S EA E + ++++D M + Sbjct: 1 MVDILLVDDEPRMLELLTLYLTPIGYNCVCVVSGEEAISHIENQN-FTFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 252 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ V A + +A + +E+ P+ +V+D + Sbjct: 22 RVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAA-QEIEPDVVVLDIMLPDFDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V +L + E ++G AG + ++ KPF+ E + +R L + Sbjct: 81 EVMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 140 Query: 123 SKDEN 127 + E Sbjct: 141 AHAEQ 145 >gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + GF V A+ A P+ +V+D M G+ Sbjct: 8 RVLLVDDEPHILQFLELGLQNEGFEVRTASDGECALREA-AGFEPHVIVLDVMMPGMDGL 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G DV V L + + + + G GA+ ++ KPF+ E L ++ + Q Sbjct: 67 AVCRRLKEEGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQ 125 >gi|163785606|ref|ZP_02180161.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1] gi|159879126|gb|EDP73075.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1] Length = 203 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + +V+ + ++ + G V S +A E E P+ +++D + + Sbjct: 1 MPFIYVVEDDEDINELLVYNLQKEGNKVKSFYSGKDALSSLENEK-PDLILLDIMLPDID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 V+ P+ ++ + L + I G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEVCKTVKSDPVKREIPIIMLTAKSTEIDKIVGLELGADDYITKPFSFRELLARIKAVL 119 Query: 119 QMQKSKD 125 + ++K Sbjct: 120 RRCQNKS 126 >gi|86749533|ref|YP_486029.1| response regulator PleD [Rhodopseudomonas palustris HaA2] gi|86572561|gb|ABD07118.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 457 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A + +A E C++ + +++D M + F Sbjct: 4 RILVVDDIPANVKLLEARLSAEYFDVVTAANGAQALEICDRAEC-DIVLLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 67.5 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 4/112 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + L + + EA + +V + L Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEPNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112 + R + V + + + D + G G N +LL+P ++ L Sbjct: 216 LCSQARSLERTRHVPILAI-ADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 232 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ G+ V +A + +A E + + + +++D + G+ Sbjct: 4 KILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEV-DLILLDVMLPGMSGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V L + E ++G GAN ++ KPF E L +R ++Q Sbjct: 63 ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQ 121 >gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024] gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024] gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter calcoaceticus PHEA-2] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + + R GF V +A ++ PN +++D + + Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASF-QQRKPNLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQF 129 + + K E + Sbjct: 117 RRLERKAEPEQ 127 >gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 233 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V + G+ V A + EA E KE P+ +++D + + Sbjct: 6 KKILVVDDEVKISEVIKSYLEHDGYKVVTALNGKEAMESY-KEFNPHLIILDLMLPDISG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L +V +++I G GA+ ++LKPF+ L + + + Sbjct: 65 EEICKRIRKNSS---VPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L++D ++ K R G+ V A E E K + +++D + + Sbjct: 1 MENILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKI-KSGNFDLVILDLMLPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ +++ + L + + I G GA+ +L KPFN L +R L + Sbjct: 60 GLTLC-KEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRR 118 >gi|237724054|ref|ZP_04554535.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|265755338|ref|ZP_06090108.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229437514|gb|EEO47591.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] gi|263234480|gb|EEZ20070.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1351 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +LLV+ + R + N + + V EA E E E PN ++ D M + +E Sbjct: 1102 ILLVEDNTEFRNFLKEELNKW-YQVIEAKEGLEG-EKIAIERDPNLIISDVMMPIMNGIE 1159 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L + E + G AGA+S+L KPFN + L +R+L + Q Sbjct: 1160 LCKRLKNNIQTSHIPIILLTARISDEDKMTGYEAGADSYLSKPFNFDILLTRIRKLIEQQ 1219 Query: 122 KSKD 125 +++ Sbjct: 1220 ENRK 1223 >gi|218130279|ref|ZP_03459083.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697] gi|217987563|gb|EEC53891.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697] Length = 1359 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R+ R + V ++ A + KE P+ ++ D M + Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSAL-YIIKEYFPDLIISDIMMPEMRGD 1153 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E V+ + + + L + +I G + GA+ +++KPFN LR + L Sbjct: 1154 ELCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLAN 1213 Query: 121 QKSKD 125 + Sbjct: 1214 RALLR 1218 >gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016] gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 237 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L++D +R++ + + GF VFEA + +A + +E + V+D M + Sbjct: 14 NKVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEK-IDLCVLDIMMPQMDG 72 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VR+ D+ + L + + + + G GA+ +L KPF + L ++ L + Sbjct: 73 YEFCKQVRR--YYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLR 130 Query: 120 MQK 122 K Sbjct: 131 RYK 133 >gi|254409963|ref|ZP_05023743.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182999|gb|EDX77983.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1525 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + R++ + + + + +A + EA + P+ +++D M + Sbjct: 978 KILIVDDDTVNRQILVNYLSLENYQLAQAANGREALDIINNGFQPDLILLDAIMPRMTGY 1037 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ T++ V L ++AG G N +L KP + L ++ ++ Sbjct: 1038 DVCKKLREFYPPTELPVLMLTANEQVNDLVAGFSVGVNDYLTKPIAKYKLLVRIKTHLRL 1097 Query: 121 QKSKDENQFLDA 132 EN L A Sbjct: 1098 STIAKENAQLYA 1109 >gi|153805826|ref|ZP_01958494.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185] gi|149130503|gb|EDM21709.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185] Length = 1376 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 18/143 (12%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++LLVD +H + + R F + + A EA + C + LP+ ++ D M + + Sbjct: 1133 TILLVDDNHEILMILREYFVK-DYNIIMAIDGQEALDKCNRS-LPDIIISDVMMPRMNGI 1190 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 E A +++ + + L + E I G GA++++ KPFN L+ +R L Sbjct: 1191 ELCATLKKNLQTCFIPIILLTAKSQVEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLNK 1250 Query: 120 -------------MQKSKDENQF 129 Q+ +D+ Q Sbjct: 1251 SHQMRNLPTANNVRQEIQDKKQR 1273 >gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 239 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 50/124 (40%), Gaps = 3/124 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++++D + ++ G+ V A +A + KE + ++D + + Sbjct: 4 KTIMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQEL-KEKDVDMFIVDIMLPNMDG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R V +L + + + G GA+ +++KPF+ L +R + + Sbjct: 63 FEFVRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFR 122 Query: 120 MQKS 123 + Sbjct: 123 RMQL 126 >gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 230 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+VD +R + + GF V E + + + + +V+D + G Sbjct: 1 MPKLLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSH-FDMVVLDIMLPGPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L +R++ +++ + L + D I G GA+ +++KPF+ L + + Sbjct: 60 GLSLCKEIRKI---SNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAIL 116 Query: 119 QMQKSK 124 + ++ Sbjct: 117 RRVAAQ 122 >gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LL++ + ++ R F V S E + +E + +++D + G Sbjct: 1 MKKILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHY-DLIILDIMLPGVN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + ++ + ++ + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 ERYERLAGKQ 126 >gi|299142472|ref|ZP_07035604.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] gi|298576194|gb|EFI48068.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] Length = 1337 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 1 MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M ++L+V+ + +R++ + + + + + A E E E +P+ ++ D Sbjct: 1081 MKGIEEATILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDE-MPDIIISDVL 1138 Query: 56 MEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 M + +E +++ + V L E+ + G + GA+ ++ KPFN E L Sbjct: 1139 MPNMSGIELCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISR 1198 Query: 114 MRELPQMQKSKDE 126 L ++ Sbjct: 1199 CNNLINSRRLLQR 1211 >gi|281426053|ref|ZP_06256966.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] gi|281399946|gb|EFB30777.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] Length = 1337 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 1 MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M ++L+V+ + +R++ + + + + + A E E E +P+ ++ D Sbjct: 1081 MKGIEEATILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDE-MPDIIISDVL 1138 Query: 56 MEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 M + +E +++ + V L E+ + G + GA+ ++ KPFN E L Sbjct: 1139 MPNMSGIELCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISR 1198 Query: 114 MRELPQMQKSKDE 126 L ++ Sbjct: 1199 CNNLINSRRLLQR 1211 >gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 223 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|332829768|gb|EGK02414.1| hypothetical protein HMPREF9455_01684 [Dysgonomonas gadei ATCC BAA-286] Length = 1268 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ ++ ++ + + + A A + +P+ ++ D M + Sbjct: 1022 MQ-ILVVEDNNELQDFLKNSLQEL-YNISVANDGEVAWNLINR-KMPDLIISDIMMPNMD 1078 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ + + V L D K + G GA+ ++ KPF+ L + + Sbjct: 1079 GFGLCQLIKSTFQTSHIPVILLTALSDKTKQLEGLGLGADDYITKPFDITVLTKRIESIL 1138 Query: 119 QMQKSKDE 126 + ++ E Sbjct: 1139 KNREIVRE 1146 >gi|295086680|emb|CBK68203.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family./Y_Y_Y domain. [Bacteroides xylanisolvens XB1A] Length = 1540 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F + V EA E K LP+ ++ D M +E Sbjct: 1254 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1311 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1312 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1371 Query: 122 KSKD 125 K + Sbjct: 1372 KLQS 1375 >gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 232 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R+ + + G+ EA S EA + EKE P ++D + G+ Sbjct: 4 KKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEK-PALAILDIMLPGMSG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + + + I G GA+ +++KPFN + L +R L + Sbjct: 63 YEVCEKIRDESPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRV 122 Query: 122 KSKD 125 Sbjct: 123 NLSQ 126 >gi|189465368|ref|ZP_03014153.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM 17393] gi|189437642|gb|EDV06627.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM 17393] Length = 1295 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L +D + +R++ +H+ + + +F A + + E + + + ++ D M + LE Sbjct: 1050 ILFIDDNKDLRELIQHILSKK-YQIFIAENALQGLELLKSTPV-DIIICDIMMPQMNGLE 1107 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + + L + + I +AGA S++ KPF + L+ + L Q + Sbjct: 1108 FCRQIKGDIQTNHIPIIMLTAKNAVDDQIECYKAGAESYIAKPFEMKILQARIDNLLQSR 1167 Query: 122 KSKDE 126 + + Sbjct: 1168 EQSRQ 1172 >gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 242 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF +F A + E K + P+ ++ D M Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKA-KTIFPDLIISDVMMPRANGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G AG + ++ KPF+ + L ++ + Sbjct: 75 ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 Query: 121 Q-KSKDENQFLDAI 133 Q + E I Sbjct: 135 QERLLKEAARFADI 148 >gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1334 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R + LF+ + V+EA E E KE+ P+ ++ D M + + Sbjct: 1085 KILIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1142 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L + E + G + GA+ ++ KPFN + L L Sbjct: 1143 EMCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNS 1202 Query: 121 QKSKDE 126 +K + Sbjct: 1203 RKLLQQ 1208 >gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 1/127 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ V A +E P+ +++D + G+ Sbjct: 5 ILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAA-RESHPDLILLDWMLPGISGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G V + L + + + G AGA+ +++KPF+ E L +R + + Sbjct: 64 ICKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQE 123 Query: 124 KDENQFL 130 ++ + L Sbjct: 124 ENPEEIL 130 >gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM 17244] gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM 17244] Length = 226 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ G+ E +A E C+ E + +V+D M + Sbjct: 1 MPRILIVDDEPKIAELINKYATFEGYDTVEVNDGMKAIEICKVED-FDIIVMDIMMPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + VR++ D V L + I G GA+ +++KPF+ + L + + + Sbjct: 60 GF-SAVREIRKTKDTPVIMLSARGEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILKR 118 Query: 121 QKSKDENQ 128 ++K + + Sbjct: 119 TQNKSDKE 126 >gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W] gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W] Length = 223 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|163815559|ref|ZP_02206932.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759] gi|158449196|gb|EDP26191.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + G+ V++A + EA + + +++D M + Sbjct: 1 MYNILICDDEKDIVSAIEIYLKTAGYSVYKAYNGKEAVDMVNAKD-IQLVLMDVMMPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++V V L + + + G GA+ ++ KPFN L ++ + Sbjct: 60 GITAMAKIRE-NSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRR 118 >gi|120402928|ref|YP_952757.1| multi-sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] gi|119955746|gb|ABM12751.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium vanbaalenii PYR-1] Length = 1385 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D + +R+ L G+ V EA E P+ +V D M L Sbjct: 628 RVLVADDNADMREYLTRLLRSDGYRVDAVADGLEALEAIRAG-APDIVVSDVMMPRLDGL 686 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R V L ++ I+G RAGA+ +L+KPF L +R ++ Sbjct: 687 GLVAELRADRRTAATPVLLLSARAGQQESISGLRAGADDYLVKPFAAAELLARVRTNVEL 746 Query: 121 QKSK 124 + + Sbjct: 747 ARLR 750 >gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein [Campylobacter concisus 13826] gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus 13826] Length = 219 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + V G+ V A + EA + + +V+D M + Sbjct: 1 MK-ILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMD-FTAVAHYDLIVLDLMMPVMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + D + ++ G AGA+ +L+KPF+ + L +R L + Sbjct: 59 GLTFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRR 118 >gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 232 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L+ D + + + GF VF+A EA E ++ ++D M + Sbjct: 1 MENILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEIL-RQARIQLAIVDIMMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I V+++ + + V +L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 G-IRLVKEVRRFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRR 118 >gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 250 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ ++R++ G+ V A A E EL + LV+D + Sbjct: 20 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G + + L + + G GA+ +L KPF+ + Sbjct: 80 PQINGLDICRLLRHQ--GNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARC 137 Query: 115 RELPQMQK 122 R L + Q+ Sbjct: 138 RALLRRQR 145 >gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 238 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + +++ EA + +A + + +++D + G + Sbjct: 6 KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDY-DVILLDLMLPGRDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + L + + + G AG + +++KPF+ + ++ L + Sbjct: 65 EVCKEIREK---KATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|224369670|ref|YP_002603834.1| two-component response receiver and regulator protein [Desulfobacterium autotrophicum HRM2] gi|223692387|gb|ACN15670.1| two-component response receiver and regulator protein [Desulfobacterium autotrophicum HRM2] Length = 222 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 56/142 (39%), Gaps = 11/142 (7%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M + +++VD + +V + G+ + AT A + + P +++D M Sbjct: 1 MKNTRPDIIIVDDNPHNLRVLSTILKKEGYEIRPATGGQTALAAIDAKP-PELILLDIMM 59 Query: 57 EGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + E +++ ++ V ++ D + I G ++ KPF E + + Sbjct: 60 PAMNGYEVCECLKKNEGTRNIPVIFITALDDVKDKIKAFAMGCTDYISKPFQEEEILARV 119 Query: 115 RELPQMQKSKD----ENQFLDA 132 + M + + +N+ L A Sbjct: 120 KTQIHMGRLQQDLRVKNERLKA 141 >gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 246 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 4/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ H + K+ H G+ V T EA + + +++D + G+ Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDY-DLIILDLMLPGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V L + D + I G GA+ ++ KPF+ L ++ Sbjct: 60 GLEVCRKIRGNSSL-HIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQL 118 Query: 119 QMQKSKDENQ 128 + + + ++ Sbjct: 119 RGRTKELTDE 128 >gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332] Length = 229 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 LLVD +R++ R GF V EA A E+ + + +V+D + + F Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPV-DVMVLDLMLPEMDGFQV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A VR+ + V L D E I G GA+ +L+KPF+ L +R + + Sbjct: 61 LAEVRRRETW--LPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRR 116 >gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 234 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + V + +A + ++ + +++++D + + Sbjct: 4 TILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRV-DFVIMDLMLPQLDGV 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + + + L + I G GA+ +L KPF+ + L ++ + + Sbjct: 63 EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRR 120 >gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] Length = 237 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + E+ P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKV-NEIDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRR 120 Query: 122 KSKDEN 127 + Sbjct: 121 DIVQKQ 126 >gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1] gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 244 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + + E+ + L++D + GV Sbjct: 5 KRILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 ++ + +A Sbjct: 124 EALSRDTRAEA 134 >gi|225387739|ref|ZP_03757503.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme DSM 15981] gi|225046157|gb|EEG56403.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme DSM 15981] Length = 231 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD + + G+ A EA +E P+ +++D + Sbjct: 1 MKKILIVDDERDIVECLDMNLRKKGYATAFAYDGTEAVLTARRE-RPDCILLDVMLPKIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E ++ + V L + + + + G AGA+ ++ KPF L + Sbjct: 60 GIEVCHLLKADQATGHIPVIMLTAKGEEDDKVTGFDAGADDYITKPFGWRELFARIEVAL 119 Query: 119 QMQK 122 + + Sbjct: 120 RRSQ 123 >gi|163794009|ref|ZP_02187982.1| regulatory components of sensory transduction system [alpha proteobacterium BAL199] gi|159180623|gb|EDP65142.1| regulatory components of sensory transduction system [alpha proteobacterium BAL199] Length = 326 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + + L D + V A A P+ +++D M G Sbjct: 10 TVLVVDDTPDNLVLMSGLLKDH-YRVKVANGGERALTIAATAPQPDIVLLDVMMPGLDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P +D+ V +L D G GA ++ KP + + + Q+ Sbjct: 69 EVCRRLKAHPSTSDIPVVFLTARSDQADERRGLELGAVDYITKPISPPIVLARVHNHLQL 128 Query: 121 QKSKDENQ 128 +++ D + Sbjct: 129 KQANDLLR 136 >gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 250 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + ++ R + G+ V A+ + P+ +V+D ++ Sbjct: 13 RILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSGV 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + L D + AG + +L+KPF+ E L +R + + + Sbjct: 73 DICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRAQ 132 >gi|111224670|ref|YP_715464.1| two-component regulatory system response regulator [Frankia alni ACN14a] gi|111152202|emb|CAJ63932.1| response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) [Frankia alni ACN14a] Length = 259 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + R + G V A A P+ +V+D + + Sbjct: 18 RILIVEDEPQLLRAMRINLHSRGHEVRTAVDGAHALREAASHP-PDLVVLDLGLPDLDG- 75 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + T V + L IA AGA+ ++ KPF+ E L +R + + Sbjct: 76 IDVIRGLRGWTRVPIIVLSGRTSGHDKIAALDAGADDYVTKPFSVEELLARIRAVTRR 133 >gi|77919611|ref|YP_357426.1| two component hybrid sensor response regulator [Pelobacter carbinolicus DSM 2380] gi|77545694|gb|ABA89256.1| response regulator receiver sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 391 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD I+ ++ + GF V A S E E E+E P+ +++D M + Sbjct: 4 RILVVDDEAIILQLATMVLTSRGFEVLTAHSGQECLEIVEQES-PDLVLLDYMMPVMDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 D +V L + + + +AGA ++LKPF + L + + ++++ Sbjct: 63 TTLRHLRQAHPDTYVIMLTGKGSEQIAVDVMKAGAADYILKPFKNQDLVERIENVLRIRR 122 Query: 123 SKDEN 127 + N Sbjct: 123 IEIHN 127 >gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] Length = 241 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R++ + F EA EA + + +++D + + Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDY-ACILLDLMLPEM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 Q+ D + L + + + G +GA+ +++KPF+ + ++ L + Sbjct: 60 DGIEVAT-QLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118 Query: 120 MQKSKDENQ 128 ++ Q Sbjct: 119 RTQTTTPEQ 127 >gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM 10507] gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM 10507] Length = 233 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ +RK+ + A + A P+ +++D + Sbjct: 1 MNKLLILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHN-PDIVLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++ +++ + + + I AGA+ +L KPF+ E L +R + Sbjct: 60 MDGV-EIIRKIRAWSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLR-VT 117 Query: 119 QMQKSKDENQ 128 Q + + +N+ Sbjct: 118 QRRLAMMQNR 127 >gi|121605101|ref|YP_982430.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594070|gb|ABM37509.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 242 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 6/131 (4%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ + GF+ A A+ + +LP+ +++D + Sbjct: 1 MKHLPRVLIVEDEPAIAELIQVNLKHGGFIPVLAYDSVAAQRELDT-MLPDVILLDWMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L R+ + + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GQSGLSLARLWRKQERTRSIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKDE 126 + + + + + Sbjct: 120 AVLRRRAPESQ 130 >gi|332666853|ref|YP_004449641.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335667|gb|AEE52768.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1368 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 12/139 (8%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLV+ + V + + + A E + EL+P+ ++ D M + F Sbjct: 1115 ILLVEDNPDVAAYLHSCLPE--YRLEFAKDGLEGFDKA-TELIPDLIISDVMMPRMDGFT 1171 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H+R + + + L + DFE + G GA+++L KPF E LR +++L +++ Sbjct: 1172 LCQHLRNDERSSHIPIILLTAKADFESKLTGLDRGADAYLEKPFQPEELRLRIKKLLELR 1231 Query: 122 KSKDE-------NQFLDAI 133 + + + L A+ Sbjct: 1232 EKLKQHYLQAFGLRKLAAL 1250 >gi|310815788|ref|YP_003963752.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308754523|gb|ADO42452.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 243 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD +R + + GF V A S E + P+ +V+D + Sbjct: 1 MNHILIVDDDPEIRSLLSRYLSGQGFRVTMAASRRECMQRL-SHETPDLVVLDVLLPDGS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V V L + I G GA+ +L KPFN L ++ + + Sbjct: 60 GLEMCRELSSANPHVPVVLLTALKEDVDRIIGLELGADDYLGKPFNPRELVARIKAVLRR 119 Query: 121 QKSKDEN 127 S+ E Sbjct: 120 VASQPEE 126 >gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM 16992] gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM 16992] Length = 243 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+++VD +R++ + GF V A S EA E EK + P+ +V+D + + F Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-IQPDLIVLDVMLPDIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V YL D + + G G + ++ KPF+ E + +R + + + Sbjct: 67 TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 123 SKDEN 127 + E+ Sbjct: 127 EQVED 131 >gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] Length = 228 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 6 KIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRENVPDLLILDWMLPGVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 65 ELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 121 QK 122 Sbjct: 125 SN 126 >gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] Length = 282 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 48 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNW-DALILDLMLPGVDG 106 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 107 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 166 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 167 DALARDSRIDA 177 >gi|116621521|ref|YP_823677.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224683|gb|ABJ83392.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 245 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGV 59 M +L+V+ + + R G+ V + A E E + +V+D + G Sbjct: 1 MSRILVVEDELHLAEGLRFNLEAEGYQVEVVETGEAALERLVPGEPRFDVVVLDVMLPGK 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F G + L E ++ G AGA+ +L KPF L +R L + Sbjct: 61 DGFTVMSEMRHAGQFIPTLMLTARGHAEDILHGFAAGADDYLTKPFELAILIARIRGLLR 120 Query: 120 MQK 122 ++ Sbjct: 121 RRE 123 >gi|302843336|ref|XP_002953210.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f. nagariensis] gi|300261597|gb|EFJ45809.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f. nagariensis] Length = 1844 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 5/137 (3%) Query: 2 DSLLL--VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEG 58 LL VD H+ + V + L G+ V S EA + LP+ +++D M Sbjct: 770 KRFLLLSVDDDHVNQSVVKSLLGSTGYEVVAVPSGPEALRYVATAPALPDLVLLDCMMPE 829 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + +R M V + + + + E ++ G GA+ ++ KPF R L +R Sbjct: 830 MDGYEVLQRLRAMTPNVHVPIIMVSAQTEEEHVVCGLDLGADDYVTKPFKRNELLARIRA 889 Query: 117 LPQMQKSKDENQFLDAI 133 + + + L+ I Sbjct: 890 QLAYGEWEHDEDALETI 906 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 8/126 (6%) Query: 5 LLV--DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC----EKELLPNYLVIDESMEG 58 L+V D + + V + + + A++ + + + P+ +++D S+ Sbjct: 991 LIVCIDDDDVNQVVLQGMLASQHYRYVRASTGAQGLSYVCGTHNGGIPPDLVLLDCSLPD 1050 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F +RQM V V L + ++ G + GAN+++ KPF R L +R+ Sbjct: 1051 MTGFDVCRCIRQMYNKQQVPVIMLSARHNESAVVEGLKCGANTYVTKPFRRNELLARIRQ 1110 Query: 117 LPQMQK 122 + ++ Sbjct: 1111 HLRSRE 1116 >gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 256 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A + A E E P+ ++D M G+ F Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAET-YRPDAFILDVMMPGMDGF 89 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D +L + E I G GA+ ++ KPF+ E + +R + + Sbjct: 90 TLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVA 149 Query: 123 SKDENQ 128 D + Sbjct: 150 KDDSEE 155 >gi|17228424|ref|NP_484972.1| two-component system, regulatory protein [Nostoc sp. PCC 7120] gi|75906731|ref|YP_321027.1| response regulator receiver domain-containing protein [Anabaena variabilis ATCC 29413] gi|17130275|dbj|BAB72886.1| two-component system, regulatory protein [Nostoc sp. PCC 7120] gi|75700456|gb|ABA20132.1| Response regulator receiver domain protein (CheY) [Anabaena variabilis ATCC 29413] Length = 121 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+V+ S R++ L G V AT EA E ++E P+ +V+D M + Sbjct: 1 MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEP-PDLVVLDIVMPKMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 11/138 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ + + + GF V A E N +++D + GV Sbjct: 1 MNKILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDY-NLIILDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICRRVR---DEKNTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QMQKSK-----DENQFLD 131 + +EN+ ++ Sbjct: 117 ARYERLIGSTIEENKVIE 134 >gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus helveticus H10] Length = 238 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + + E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 DIVKKAE 127 >gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f. nagariensis] gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f. nagariensis] Length = 1021 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 4/129 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGV--L 60 +L VD I + V +L + G+ V +A S EA +F +K LP+ +++D M + Sbjct: 539 VLSVDDDPINQMVVENLLSPEGYKVEQAMSGSEALDFLKKTATLPDVILLDIMMPDMSGY 598 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + + + + E ++ G AG+ ++ KPF+R+ L +R + Sbjct: 599 EVCQEIRRRYSAVSIPIIMVSAKGHPEHVMKGLEAGSVDYVKKPFHRQELLSRIRAQVRN 658 Query: 121 QKS-KDENQ 128 ++ + E + Sbjct: 659 REIFEAEME 667 >gi|291518383|emb|CBK73604.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 235 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPN--YLVIDESMEG 58 M+++L+ D + R G V A++ EA + + +++D M Sbjct: 1 MNNILICDDEKDIISALRIYLESEGMNVTAASNGREAVDIMAGPNGKDMQLILMDVMMPE 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + IA + ++ ++V + L + + + G GA+ ++ KPFN L ++ Sbjct: 61 MDG-IAAMAEIRKTSNVPIIMLTAKSEDADKVIGLTVGADDYVTKPFNPVELMARVKSQL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D +R + + GF V A + P+ +++D + Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIEL-NSFRPDLVLLDLMLPDCS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + +++ V + + + + G GA ++ KPF+ L ++ + Sbjct: 60 GYDLCKEIVKQ---SNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVL 116 Query: 119 QMQKSKDENQ 128 + + DE + Sbjct: 117 RRYEHNDEAK 126 >gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M S+LLV+ ++ +V + G+ V+ A EA E + E P+ +++D + Sbjct: 1 MKSILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFD-EKKPDLVLLDVMLPERN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++R+ V + ++ + G GA+ ++ KPF + + + + Sbjct: 60 GWEILQYIREKSS---CPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|224538757|ref|ZP_03679296.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM 14838] gi|224519649|gb|EEF88754.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM 14838] Length = 1434 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+++ + +R ++ + ++VFEA + + + E +P+ ++ D M + Sbjct: 1169 NRILIIEDNEELRHFICNVLSK-DYVVFEAENGKQGLDKALAE-MPDIVISDIMMPEMDG 1226 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ V+ + V L + I G GA+ ++ KPF+ L+ + L + Sbjct: 1227 IEFLKRVKANSNICHIPVILLSAKSSLSDQIQGLEYGADEYITKPFSSTYLKAKVDSLFK 1286 Query: 120 MQKS 123 ++ Sbjct: 1287 QRQM 1290 >gi|46014956|pdb|1NXT|A Chain A, Micarec Ph 4.0 gi|116666721|pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site Length = 120 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + EA E E E P+ +++ + + Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILXLMLPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L + + G GA+ ++ KPF+ L+ ++ L + Sbjct: 60 GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 Query: 121 QK 122 + Sbjct: 119 SQ 120 >gi|315919226|ref|ZP_07915466.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693101|gb|EFS29936.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1381 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + +R + + + V EA + +A E KE P+ +V D M G+ Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKE-FPDLVVTDIMMPGIDG 1177 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + V L + G +GA+ +++KPFN + L + L Sbjct: 1178 LELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLA 1237 Query: 120 MQKSKD 125 ++ Sbjct: 1238 QREKLK 1243 >gi|294054856|ref|YP_003548514.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614189|gb|ADE54344.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 371 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD I K+ + G V A + E + E E P+ +++D M + Sbjct: 8 RILVVDDQPINIKLLQRKLERQGLEVLVAYNGRECLKVVE-ESKPDLILLDVMMPEMDGI 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ P + + ++ + E + G AGA ++ KP + + +R ++ Sbjct: 67 ETCQHLKANPETETIPIMFITAKASKEGKLEGLDAGAVDYITKPIDLDETLARVRTQLRL 126 Query: 121 QKSKDENQFLDA 132 Q+ EN L Sbjct: 127 QEMFRENLDLQE 138 >gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+ D +RK+ R + V EA + +A + + + +++D M V Sbjct: 4 NKILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDMFYMDSEISLIILDVMMPKVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A ++++ + + V L + + ++ G GA+ ++ KPF+ + L + + + Sbjct: 64 F-AVLKEIRETSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRR 121 >gi|260170896|ref|ZP_05757308.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2] Length = 1381 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + +R + + + V EA + +A E KE P+ +V D M G+ Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKE-FPDLVVTDIMMPGIDG 1177 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + V L + G +GA+ +++KPFN + L + L Sbjct: 1178 LELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLA 1237 Query: 120 MQKSKD 125 ++ Sbjct: 1238 QREKLK 1243 >gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621] gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621] Length = 225 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E ++++D M + Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVYAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++V + + ++ G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 227 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + K G+ V A +E P+ L++D + GV Sbjct: 5 ILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATA-RESQPDLLILDWMLPGVSGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G V + L + + +AG AGA+ +++KPF+ E L +R + + Sbjct: 64 ICRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRRNQE 123 Query: 124 KDEN 127 +D + Sbjct: 124 EDPD 127 >gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] Length = 233 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + + G++V EA EA + +++D M + Sbjct: 5 KVLVVDDESRMRKLVKDFLSKKGYIVLEAGDGEEAVDIFMNNKDIGLIILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + D + G G + ++ KPF+ + L + + + Sbjct: 65 ETCKEIRK---FSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRR 121 >gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 239 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + + LDA Sbjct: 124 DALARDSRLDA 134 >gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 246 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD V KV N G+ V A +A E KE P+ +V+D + + Sbjct: 1 MTCILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKE-APDLVVLDVMLPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R V + +L + +AG GA+ +L KPF+ + L + + Sbjct: 60 GFAVCRRIRAESC---VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] Length = 229 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFQVCKTIRK--ENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117 Query: 119 QMQKSKDE 126 + + DE Sbjct: 118 RRIEVHDE 125 >gi|37524232|ref|NP_927576.1| osmolarity response regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783655|emb|CAE12507.1| Two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 239 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +R + + GF V A + + + + +V+D + G Sbjct: 5 NKILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQ-MDRLLTRESVSLIVLDLMLPGEDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 64 LSVCQRLRNQSNPVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 Query: 122 KSK 124 +K Sbjct: 124 ANK 126 >gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 217 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ +RK+ + GF V EA+ EA E + + + +++D + Sbjct: 1 MK-ILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKF-QPSMYSVVILDVMLPQKD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ D V L + + I G GA+ +++KP + + + ++ + Sbjct: 59 GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115 Query: 119 QMQKSKDENQFL 130 + K N L Sbjct: 116 KRTKKPSSNDIL 127 >gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 235 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + L GF A A E + +++D + G+ Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAAND-IDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1] gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 223 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E ++ P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115 Query: 119 QMQKSKD 125 + K + Sbjct: 116 RRVKKTE 122 >gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM 2048] gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST196] gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621] gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621] gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST196] gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM 2048] Length = 238 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDIMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 65 EVCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121 >gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L +D + V + G+ V T+ A K + P+ +++D + G+ Sbjct: 1 MK-ILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTF-KTVNPDLVILDLMLPGMS 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V + L +V + + G GA+ +L KPF+ L ++ + Sbjct: 59 GEEICRKIRALSK---VPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAIL 115 Query: 119 QMQKS 123 + K+ Sbjct: 116 RRTKN 120 >gi|255693555|ref|ZP_05417230.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260620620|gb|EEX43491.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1355 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + +R + F + V + A E+ ++ + ++ D M G Sbjct: 1099 RILIVEDNDDLRFYLKKTFASI-YTVIDKPDGESALEYL-QDKSVDLIISDVMMPGIQGD 1156 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L + + + ++ G +GAN +L KPF+ E L+ ++ + Q Sbjct: 1157 ELCRRIKSDFTTSHIPVILLTAKTEKDAILEGLESGANDYLTKPFDTEILKTKIKGVLQN 1216 Query: 121 QKSKDE 126 +K + Sbjct: 1217 RKIMRQ 1222 >gi|182412631|ref|YP_001817697.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177839845|gb|ACB74097.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 367 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + V G+ + A EA + +P+ +++D M G+ F Sbjct: 4 TILIVDDTPANLCVLVETLGAAGYRLMVAEDGEEALAQ-TAQTVPDLILLDVMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P D V ++ + + AG ++ KP E +R + Sbjct: 63 ETCRRLRAQPTTADTPVLFMTALNETPDKVKAFAAGGVDYITKPIEHEEALARVRTHLTL 122 Query: 121 QKSKDENQFLDAI 133 ++ + E AI Sbjct: 123 RRLRHELAEQLAI 135 >gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 227 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 18/144 (12%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ +R + GF V A EA + +++ P+ +V+D + G E Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIW-QDIKPDLIVLDLMLPGLSGWE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +RQ + + L VD + G GA+ ++ KPF+ L ++ + + Sbjct: 64 VMKKIRQK---NNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRS 120 Query: 122 KSKDEN------------QFLDAI 133 + ++ + L+A+ Sbjct: 121 RPHEQVTNVSISNLSINPERLEAL 144 >gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 231 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLVD +R+ + + GF V A++ E E+ + P+ ++ D M + Sbjct: 5 LLLVDDEPGIREAVKDYLQESGFSVQVASNALEGWEWMQMNT-PDLVISDVMMPQVDGYQ 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R+ P + V +L + I G AG +++L KPF+ + L + L + Sbjct: 64 FLKQLREDPRFQALPVVFLTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLLARR 123 Query: 122 KSK 124 +K Sbjct: 124 AAK 126 >gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1299 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ ++ R + F+VFEA+ E E + P+ ++ D M + Sbjct: 1053 KILLVEDNNDFRHYLQEELRRH-FVVFEASDGEEG-EAVALQQKPDIIITDLMMPKMDGI 1110 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L E G + GA++++ KPF E L + L Sbjct: 1111 ELCKRIKHNIDVSHIPIILLTASASMENEERGYKEGADAYMTKPFKWEILTARIHNLLAQ 1170 Query: 121 QKSKDENQF 129 ++ + +N+F Sbjct: 1171 RR-QQQNEF 1178 >gi|298384579|ref|ZP_06994139.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298262858|gb|EFI05722.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1350 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LLLV+ + + + + + + V A EA K+ + ++ D M + Sbjct: 1104 LLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALN-VIKDNEIDIIISDVMMPEMDGLE 1161 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + + + L + E I AGA+ ++ KPF + L + + Sbjct: 1162 FCRTLKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFIMHK 1221 Query: 122 KSKDEN 127 K+K E Sbjct: 1222 KNKQEE 1227 >gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563] Length = 235 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + + G+ A E +E + +++D + Sbjct: 7 KRILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKA-QEGNWDLILLDLMLPEING 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R +DV + + ++G GA+ +++KPF E L +R L + Sbjct: 66 IEVCRRLR---PTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLR 122 Query: 120 MQKSKDENQ 128 ++E Q Sbjct: 123 RIDIEEEQQ 131 >gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1010 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + +R + L + + A + A E P ++ D M + Sbjct: 629 RVLIVDDNADMRDYLQRLLEKQ-YYIETAANGKLALEKIATH-QPELIISDVMMPEMDGI 686 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + HV+ P + V + E I G GA+ +L KPF+ + L+ +R ++ Sbjct: 687 ELLHHVKHNPATESLPVILVSARAGEEATIEGYDIGADDYLTKPFSAKELQARVRAQIRV 746 Query: 121 QKSKD 125 + Sbjct: 747 SRLHR 751 >gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G + EA + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLE-EKEFDLIILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRED-RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + +R++ L GF V EA + +A E++ + +++D M G + Sbjct: 6 ILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQD-FDLIILDIMMPGPNGYQ 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ ++ + +L G +G + +L KPF+ L + L + Sbjct: 65 TCRKIREL---SNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRRY 121 Query: 122 K 122 + Sbjct: 122 Q 122 >gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 235 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL + + + + G+ V A + +A + KE N +++D M + Sbjct: 5 KRILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKF-KEERFNLVILDVMMPEIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F+ ++V + +L + E +AG + GA+ +L KPFN E L + L + Sbjct: 64 FVVAETIRLENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKR 122 >gi|262383009|ref|ZP_06076146.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262295887|gb|EEY83818.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 1354 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL+VD + + R + + V A +A + +E LP+ ++ D M + Sbjct: 1107 TLLVVDDNADFLEFMRLSLSSA-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1164 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + G AGA+ ++ KPFN E L +R L +M Sbjct: 1165 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1224 Query: 121 QKSKDE 126 +K + Sbjct: 1225 KKKMQK 1230 >gi|320012873|gb|ADW07723.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 244 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ + ++ R G V A + P+ LV+D + G+ Sbjct: 5 VLVAEDDRKQAELIRRYLAHDGHEVSVVHDGRTALGEATRRP-PDLLVLDWMLPGLDGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G ++ + L + ++ G GA+ ++ KPF L +R L + + Sbjct: 64 VCRRLRGAG-ELPILMLTARSTEDDLLRGLDLGADDYMTKPFRPRELVARIRTLLRRSR 121 >gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] Length = 233 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F EA E + PN +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFE-QYNPNLILLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR +V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCREVRAKA---NVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLR 120 Query: 120 MQKSKDENQFL 130 + + + Sbjct: 121 RYQPVKTEEVI 131 >gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 234 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD +R+V + G+ V A E + + +V+D + Sbjct: 3 KHILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTV-DLVVLDVMLPELDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R G+ + +L D I G G + +L KPF+ L +R L + Sbjct: 62 LEVCRRLRA---GSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLR 118 Query: 120 MQK 122 + Sbjct: 119 RTE 121 >gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1311 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLV+ + R + + F V EA+ E E + P+ ++ D M + Sbjct: 1065 TILLVEDNDEFRHYLQEELSRH-FTVLEASDGEEG-ETVALQQKPDIIITDLMMPKMDGI 1122 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E G + GA++++ KPF E L + L Sbjct: 1123 ELCKRIKHNIEVSHIPVILLTASASVENEERGYKEGADAYMTKPFKWEILTARIHNLLAQ 1182 Query: 121 QKSKDENQF 129 ++ + +N+F Sbjct: 1183 RR-QQQNEF 1190 >gi|262375130|ref|ZP_06068364.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262310143|gb|EEY91272.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 254 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D + L IAG AGA+ +L KPFN L +R + + Q Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139 >gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 233 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M ++L+ D + + G+ +A++ EA + + + + + ++D M Sbjct: 1 MKPITVLIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSV-DLAILDIMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 E +R+ + + +L + I G GA+ ++ KPFN L + Sbjct: 60 IDGYEVTRQIREK---HHLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|197286720|ref|YP_002152592.1| osmolarity transcriptional regulator [Proteus mirabilis HI4320] gi|227355090|ref|ZP_03839501.1| two-component system response regulator [Proteus mirabilis ATCC 29906] gi|194684207|emb|CAR45696.1| osmolarity transcriptional regulator (two-component system response regulator) [Proteus mirabilis HI4320] gi|227164877|gb|EEI49724.1| two-component system response regulator [Proteus mirabilis ATCC 29906] Length = 240 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF + A + + + + +V+D + G Sbjct: 6 KVLIVDDDLRLRSLLERYLTEQGFQIRTAANSDQ-MDRLLTRESIHLIVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 224 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + + GF +A + + P+ +++D + G+ Sbjct: 1 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVF-RSSRPDLVLLDLMLPGM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 VR +DV + L + D ++ G +GA+ ++ KPF L +R Sbjct: 60 DGIEVCRQVRAE---SDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRAR 116 Query: 118 PQ 119 + Sbjct: 117 LR 118 >gi|253568488|ref|ZP_04845899.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|298385458|ref|ZP_06995016.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|251842561|gb|EES70641.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|298261599|gb|EFI04465.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 224 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +FG V ++E + +++D M Sbjct: 1 MAKILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEP-FDLVILDIIMPKIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE RQM V L E ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 60 GLELCHLYRQMFGY-QAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 118 Query: 119 QMQKSKDENQF 129 + K NQ Sbjct: 119 RRNKETVTNQL 129 >gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A +A + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLVILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS] gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS] Length = 236 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ + + ++ G+ A S EA + ++ + N +++D + G+ Sbjct: 4 TSILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAV-NLVLLDIMLPGIDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ +D+ + L + + + G G + +++KPF+ L +R + + Sbjct: 63 FEVCRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILK 122 Query: 120 MQKSKDEN 127 + N Sbjct: 123 RDRRNRSN 130 >gi|53725149|ref|YP_102516.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC 23344] gi|67639865|ref|ZP_00438695.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse 4] gi|121599948|ref|YP_992333.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1] gi|124384760|ref|YP_001028967.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC 10229] gi|126449935|ref|YP_001081118.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC 10247] gi|166999933|ref|ZP_02265762.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20] gi|254177571|ref|ZP_04884226.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC 10399] gi|254199424|ref|ZP_04905790.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH] gi|254205739|ref|ZP_04912091.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU] gi|254357895|ref|ZP_04974168.1| DNA-binding response regulator OmpR [Burkholderia mallei 2002721280] gi|52428572|gb|AAU49165.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC 23344] gi|121228758|gb|ABM51276.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1] gi|124292780|gb|ABN02049.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC 10229] gi|126242805|gb|ABO05898.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC 10247] gi|147749020|gb|EDK56094.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH] gi|147753182|gb|EDK60247.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU] gi|148027022|gb|EDK85043.1| DNA-binding response regulator OmpR [Burkholderia mallei 2002721280] gi|160698610|gb|EDP88580.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC 10399] gi|238520472|gb|EEP83932.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse 4] gi|243064054|gb|EES46240.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20] Length = 232 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD +R + R G V E + P+ +V+D M GV Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + G D+ V L D I G GA+ +L KPFN L + + + Sbjct: 60 DGLTVLRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119 Query: 120 MQKS 123 +++ Sbjct: 120 RRRA 123 >gi|262370701|ref|ZP_06064026.1| two-component system response regulator [Acinetobacter johnsonii SH046] gi|262314501|gb|EEY95543.1| two-component system response regulator [Acinetobacter johnsonii SH046] Length = 254 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + D GF+V A + + + L + +V+D + Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D + L IAG AGA+ +L KPFN L +R + + Q Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139 >gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 232 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 9/139 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+ D + ++ G+ V +AT A E + + + +V+D M Sbjct: 1 MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQ-AIDLVVLDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ ++ + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118 Query: 119 QM-----QKSKDENQFLDA 132 + Q +E L+A Sbjct: 119 RRFLTLNQPKVEETSVLEA 137 >gi|86606963|ref|YP_475726.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86555505|gb|ABD00463.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 344 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 7/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+VD R + L G+ V EA + +A + L P+ +++D M G+ F Sbjct: 29 LLIVDDQPHSRLLLGDLLESIGYRVSEAENGQQALQMLPS-LQPDLVLLDVMMPGLDGFE 87 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V + D + + G AGA+ FL KPF+ L +R L + + Sbjct: 88 VCRRIKADEETRLIPVVLIAAASDRKNRLRGIEAGADDFLSKPFDESELLARVRSLVRQK 147 Query: 122 KSKDEN----QFLDAI 133 ++ Q L AI Sbjct: 148 HLNEDLDHAAQVLFAI 163 >gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 233 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V +A + +A +E P+ +V+D M G+ Sbjct: 6 ILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEED-PDLVVLDIMMPGMDGLE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +V + L + + I G + GA+ +L KPFN L ++ + Sbjct: 65 VCRAIRRE---RNVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRR 120 >gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 261 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 6/135 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + + R D + V A A + +E + +++D + G+ Sbjct: 20 MATILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLA-REKQIDLVLLDIGLPGLD 78 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + + + G GA+ +++KPF+ L ++ Sbjct: 79 GFSVCRVLREDL---HIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHL 135 Query: 119 QMQKSKDENQFLDAI 133 + ++ + + A+ Sbjct: 136 RREQRYRQPKRRMAL 150 >gi|87120074|ref|ZP_01075970.1| DNA-binding response regulator [Marinomonas sp. MED121] gi|86164776|gb|EAQ66045.1| DNA-binding response regulator [Marinomonas sp. MED121] Length = 244 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD V+++ G+ V A++ A +E +P+ +++D M + Sbjct: 20 TILVVDDKSNVQQLLSEFLTGHGYQVRLASNGKAAL-LALEERVPDLILLDIMMPEMDGY 78 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 FI +RQ D+ V + + +I G GA+ +L+KPF L ++ + + Sbjct: 79 GFIHTMRQ---THDLPVIMVTAKQHEGDLIKGFELGADDYLIKPFKLSELLVRIKAVLRR 135 >gi|326797266|ref|YP_004315086.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548030|gb|ADZ93250.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 298 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 12/141 (8%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M + +VD + +R + + F V A S E +L +++D + Sbjct: 51 MTKSRYVYVVDDDNDIRSLLKSYLERHQFQVLTAESGEAFLEDFHADLNVELVILDVMLP 110 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G F +R V V L D I G GA+ +L KPFN L M+ Sbjct: 111 GQDGFAVCRALRTQSE---VPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMK 167 Query: 116 ELPQMQK----SKDENQFLDA 132 + + + K+E + A Sbjct: 168 AILRRIEPNDPIKEEQEKAKA 188 >gi|296112407|ref|YP_003626345.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|295920101|gb|ADG60452.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|326560837|gb|EGE11203.1| two-component system response regulator [Moraxella catarrhalis 46P47B1] gi|326561915|gb|EGE12250.1| two-component system response regulator [Moraxella catarrhalis 7169] gi|326563058|gb|EGE13332.1| two-component system response regulator [Moraxella catarrhalis 103P14B1] gi|326569554|gb|EGE19608.1| two-component system response regulator [Moraxella catarrhalis BC8] gi|326570341|gb|EGE20385.1| two-component system response regulator [Moraxella catarrhalis BC1] gi|326572378|gb|EGE22371.1| two-component system response regulator [Moraxella catarrhalis BC7] gi|326573651|gb|EGE23610.1| two-component system response regulator [Moraxella catarrhalis CO72] gi|326577274|gb|EGE27162.1| two-component system response regulator [Moraxella catarrhalis 101P30B1] gi|326578036|gb|EGE27900.1| two-component system response regulator [Moraxella catarrhalis O35E] Length = 240 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 5/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60 +LL++ + ++ + + V A + + + KE + +V+D + + Sbjct: 3 KQILLIEDDPDLAELISDYLSMNYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMD 62 Query: 61 E--FIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 VR V + L + D + G GA+ ++ KPF L +R Sbjct: 63 GMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122 Query: 117 LPQMQKSKDE 126 + + ++ ++ Sbjct: 123 VLRRHETPNQ 132 >gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 231 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V + GF V T+ + +KE P+ +++D + G+ Sbjct: 3 KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ ++ KPF+ L ++ + + Sbjct: 62 EELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|153875315|ref|ZP_02003172.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152068221|gb|EDN66828.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 383 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD V +D GF V A + +A + P+ +++D M G+ Sbjct: 7 NTILIVDDIQENISVLFRFLSDEGFKVLIAQNGEQAL-RISEIGHPDLILLDVMMPGMSG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ ++ + ++ D I G GA ++ KP +E + + + Sbjct: 66 FEVCNQLKNNEKTQEIPIIFMTALTDIVDKIKGFSLGAADYITKPIQQEEVLARVNTHIK 125 Query: 120 M 120 + Sbjct: 126 I 126 >gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 65 ELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 >gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 236 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + ++ GF V ATS A ++ P+ +V+D + + F Sbjct: 12 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAA-RDHRPDLVVLDVMLPDLDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 GT V +L + I G G + ++ KPF+ E L +R + + Sbjct: 71 EVIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTS 130 Query: 123 SKDE 126 + ++ Sbjct: 131 TGEQ 134 >gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] Length = 223 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 57/130 (43%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D V + + F G++VF A + EA + ++ P+ +++D +M Sbjct: 1 MYKILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIKQASRQ--PDIILLDINMPEAD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + +L ++ ++G AG + +++KPF+ E L + Sbjct: 59 GIEVCRRIR---DYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHI 115 Query: 119 QMQKSKDENQ 128 + + + Sbjct: 116 RRENRSAAKR 125 >gi|288960530|ref|YP_003450870.1| two-component response regulator [Azospirillum sp. B510] gi|288912838|dbj|BAI74326.1| two-component response regulator [Azospirillum sp. B510] Length = 249 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R + GF V A E + + +++D + G Sbjct: 5 RHLLIVDDDPEIRDMLHDFLVKSGFRVSTAGDGRE-MARVLAQWPVDLIILDLMLPGEDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V L I G GA+ +L+KPF+ L +R + + Sbjct: 64 TSLCRSLRAKSG---TPVIMLTAMGSEVDRIVGLEVGADDYLVKPFSARELLARIRAILR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] Length = 238 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + + E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 DIVKKAE 127 >gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 224 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 119 QMQKSKD 125 + K + Sbjct: 117 RRVKKTE 123 >gi|172038233|ref|YP_001804734.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699687|gb|ACB52668.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 384 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LL+D +R + G+ V E KEL P ++ D M G Sbjct: 1 MVQILLIDDDRTIRSLLERTLKRQGYDVVCVDKGAEGLIKA-KELHPAMIICDWVMPGIT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE V+++P F L E + G AGA+ FL KP +R Sbjct: 60 GLEVCRQVKRIPDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARIRAGL 119 Query: 119 QMQKSKDEN 127 ++ + + Sbjct: 120 RLHQLSQDL 128 >gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 231 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+++ + + + G+ V A + + P+++V+D + + Sbjct: 6 NVLVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGL-IDYYDHQPDFIVLDIMLPKIDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +V V + + + I G GA+ +++KPF+ + + M+ + + Sbjct: 65 EVCREIRKD---RNVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRR 121 >gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] Length = 1125 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + ++ + G+ V + +A E E P +++D M E Sbjct: 719 ILVVDDEPVNLQILNNFLRLEGYRVKAVENGRQAIESVTMEK-PALMLLDVMMPELSGYE 777 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 H+R+ ++ + L + + G AGAN +L KPFN++ L +R Sbjct: 778 VCTHLRERYSRAELPIIMLSALGQVQDKVKGFDAGANDYLTKPFNKDELSARIRAYINAS 837 Query: 120 -MQKSKDENQFLD 131 ++ + +N+ L Sbjct: 838 LTEQERAQNRALQ 850 >gi|171910123|ref|ZP_02925593.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 242 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--I 63 +VD +R++ + GF V A + R+ E+E P+ +V+D M G Sbjct: 12 VVDDHGEIRELVVRYLSQHGFRVTAAQDATDFRQQLEREK-PDLVVLDIMMPGEDGLALC 70 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 H+R T + + +L + I G GA+ +L+KPFN L +R + + + Sbjct: 71 RHLRAE---TQIPIIFLTAMAEDADRIVGLELGADDYLVKPFNPRELLARIRAVLRRVGT 127 Query: 124 KDENQ 128 E + Sbjct: 128 LPEIR 132 >gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 233 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + ++ GF V ATS A K+ P+ +V+D + + F Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAA-KDHRPDLVVLDVMLPDLDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G V +L + I G G + ++ KPF+ E L +R + + Sbjct: 68 EVIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSA 127 Query: 123 SKDE 126 S ++ Sbjct: 128 SGEQ 131 >gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + ++ GF V A+ A P+ +V+D M G+ Sbjct: 8 RVLLVDDEPHILQFLELGLHNEGFEVRTASDGECALREA-ASFEPHVIVLDVMMPGMDGL 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G D+ V L + + + + G GA+ ++ KPF+ E L ++ + Q Sbjct: 67 AVCRRLKEEGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQ 125 >gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi 103S] gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi 103S] Length = 224 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + ++ GF V A + E + P+ L++D M G+ F Sbjct: 2 LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARA-FRPDALILDVMMPGMDGFGM 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 R G D V +L E + G GA+ ++ KPF+ E + +R + + Sbjct: 61 LRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGHS 120 Query: 125 DENQ 128 D+ Q Sbjct: 121 DDKQ 124 >gi|229513635|ref|ZP_04403099.1| two-component system response regulator OmpR [Vibrio cholerae TMA 21] gi|229521780|ref|ZP_04411198.1| two-component system response regulator OmpR [Vibrio cholerae TM 11079-80] gi|229341374|gb|EEO06378.1| two-component system response regulator OmpR [Vibrio cholerae TM 11079-80] gi|229349512|gb|EEO14468.1| two-component system response regulator OmpR [Vibrio cholerae TMA 21] Length = 263 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 29 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 87 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 88 SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 146 >gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 224 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEG--PDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 116 Query: 119 QMQKSKD 125 + K ++ Sbjct: 117 RRVKKEE 123 >gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 2 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 61 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 118 Query: 119 QMQKSKDE 126 + + DE Sbjct: 119 RRIEVHDE 126 >gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 224 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ +R + R F VFEA++ E + + +++D M + Sbjct: 1 MKKSILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQK-IDLVILDIMMPVM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + + V V L + + + + G GA+ ++ KPF+ + L ++ L + Sbjct: 60 DGMTMLEKLREV-STVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLK 118 Query: 120 MQK 122 + Sbjct: 119 RSR 121 >gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99] gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99] Length = 241 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|153808930|ref|ZP_01961598.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185] gi|149128263|gb|EDM19482.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185] Length = 1384 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 4/123 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+++ + + + L + VF A + E E E + +V D M + Sbjct: 1127 NSILVIEDNEELLHLMTKLLRHE-YNVFTAENGKEGIAVLENED-IDLIVSDVMMPEMDG 1184 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +V+ + + V L + E GA++F+ KPFN L +R L + Sbjct: 1185 MEFCKYVKGKLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLLK 1244 Query: 120 MQK 122 ++ Sbjct: 1245 YKE 1247 >gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681] gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681] Length = 1039 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 2/131 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L VD + +V L G V EA + ++ D M + + Sbjct: 706 KVLAVDDDEVNLRVLEELLYTTGCSVVAVDHAEEALHMLNGRTRFDLVITDWMMPEMSGI 765 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +++ V L + AG AGAN FL KP + E L+ +R L M Sbjct: 766 ELCRRIRERYSLSELPVLLLTARDLPGDIRAGFMAGANDFLRKPVDAEELKARVRTLLNM 825 Query: 121 QKSKDENQFLD 131 + S +E + Sbjct: 826 RHSAEEAVRSE 836 >gi|288959268|ref|YP_003449609.1| two-component response regulator, modulated diguanylate cyclase [Azospirillum sp. B510] gi|288911576|dbj|BAI73065.1| two-component response regulator, modulated diguanylate cyclase [Azospirillum sp. B510] Length = 310 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V + D + ++ AT A E + +P+ +++D M G+ F Sbjct: 7 KILVVDDIPSNVHVLSRILKD-DYDIYFATDGERALELVQS-RMPDLVLLDIMMPGMDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P D+ V ++ + + E G GA F+ KP + +R +R + Sbjct: 65 EVCRRIKADPATHDIPVIFISAKGEVEDETRGLEVGAIDFITKPISPPIVRARVRNHLLL 124 Query: 121 QKSKDENQFLD 131 ++ D + L Sbjct: 125 KRQADLLRSLS 135 >gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + ++ R GF V EA + P+ +++D + + Sbjct: 1 MKHVMLVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSF-TQRKPSLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ +L KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQ 128 + K E + Sbjct: 117 RRLDRKSEPE 126 >gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] Length = 233 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ VF A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 S+ + Sbjct: 119 RHYSQPAQE 127 >gi|167839921|ref|ZP_02466605.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Burkholderia thailandensis MSMB43] Length = 709 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + ++ G V A S EA + ++P+ +++D M G+ Sbjct: 13 QTVLVVDDTPANLELAVSALEADGLEVLVAQSGEEAIRRAQL-VVPDLVLLDVMMPGIDG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ + D V ++ D + +AG AG +L KPF L ++ Sbjct: 72 FETCRRLKAIDHTRDAPVIFMTALSDVQDKVAGFAAGGIDYLTKPFQIVELAARVKTHLA 131 Query: 120 MQKSKDENQFLDA 132 ++ ++ + +A Sbjct: 132 LRAAQRQLVLANA 144 >gi|90410641|ref|ZP_01218657.1| hypothetical DNA-binding response regulator OmpR [Photobacterium profundum 3TCK] gi|90328882|gb|EAS45166.1| hypothetical DNA-binding response regulator OmpR [Photobacterium profundum 3TCK] Length = 257 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD +R + + + + V A E E C ++ + +V+D + G Sbjct: 12 LLIVDDHSEIRDLLKRFLSQHNYRVSVAADGDE-MEQCLRDNTIDLIVLDLMLPGKDGLT 70 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + +++ V L + I G GA+ +L KPFN L ++ + + Sbjct: 71 LC-RELRVHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARIKAVIRR 126 >gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] Length = 229 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 5/137 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ LL+V+ + ++ + G+ V A E ++ P+ L++D + G Sbjct: 1 MNKADLLVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEV-RQKRPDLLLLDWMLPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 LE +R P + + L + I G GA+ +L+KPF+ E L ++ Sbjct: 60 ISGLEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKA 119 Query: 117 LPQMQKSKDENQFLDAI 133 + + D+ D + Sbjct: 120 MLRRLPPADKTLRFDTL 136 >gi|325292659|ref|YP_004278523.1| Response regulator pleD [Agrobacterium sp. H13-3] gi|325060512|gb|ADY64203.1| Response regulator pleD [Agrobacterium sp. H13-3] Length = 456 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A +A + C +E + +++D M G+ F Sbjct: 4 RVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALDICNQE-QVDIILLDIMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKANPKTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLVRL 122 Query: 121 QKSKDENQFLDA 132 + DE + Sbjct: 123 KAVSDELRLRAE 134 Score = 61.4 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 12/129 (9%), Positives = 39/129 (30%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 +L+ D ++ V T A ++++ + E Sbjct: 156 RVLVADGRASSQERIVRALKPV-AEVDAVTEPQAALLKAASNP-FELVIVNSNFEDYDPL 213 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + + + + + + G N ++L+P + L + Sbjct: 214 RLCSQLRSLERTRFLPLLLVAEQGADDMVARALDLGVNDYILRPIDPNELVARSLTQIRR 273 Query: 121 QKSKDENQF 129 ++ + + Sbjct: 274 KRYNEHLRL 282 >gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 241 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + ++ ++ G+ +A EA L++D M + Sbjct: 13 MK-ILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPEMD 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + L + I G AGA+ ++ KPFN + ++ L + Sbjct: 72 GM-QVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 130 Query: 121 QKSKD 125 K + Sbjct: 131 TKMQA 135 >gi|255532713|ref|YP_003093085.1| ATPase [Pedobacter heparinus DSM 2366] gi|255345697|gb|ACU05023.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1374 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+VD + + ++ F++ + V A EA ++E + ++ D M + Sbjct: 1122 KLLVVDDNPEIVDYLKNYFSNI-YQVSVAYDGKEALGLLDEE-QVDLIICDVMMPELDGI 1179 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++Q + V L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 1180 HFCKKIKQNIRTCHIPVVLLTAKNETNHQIKGLEVGADDYVTKPFSIALLEAKLQNISRS 1239 Query: 121 QKSKDE 126 +K E Sbjct: 1240 RKRLKE 1245 >gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 225 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+ D +R++ G+ VFEA EA + + +ID M Sbjct: 1 MATILVADDDQFIRELITLYLKKEGYTVFEANDGEEA-SSILSQQTIHLCLIDVMMPNKN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R D+ + + + + E I G + G + ++ KPF+ L ++ L Sbjct: 60 GWELCREIR---DLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRYK 120 >gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2] gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 245 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R + R GF V A A + +V+D M G Sbjct: 12 KILILDDDARIRDLLRRYLAQEGFDVILAEDSK-ALNRIMLRDAVDLIVLDLMMPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L + + I G GA+ +L KPFN L + + + + Sbjct: 71 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRR 129 >gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463] Length = 238 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + +K P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDK-YDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 DIVKKAE 127 >gi|325300130|ref|YP_004260047.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324319683|gb|ADY37574.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1442 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R + + + V A + + KE LP+ ++ D M + Sbjct: 1180 SILIVEDNDELRTSLADILS-VRYRVLTAVNGEAGWDMARKE-LPDMILTDVMMPVMDGL 1237 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + L + + I G + ++ KPF+ L + ++ + Sbjct: 1238 EMVRQLKNDAEVCHIPIIVLSAKASLDDRIQALDQGIDDYITKPFSAAYLEARIGQVFRQ 1297 Query: 121 QKSKDE 126 ++ E Sbjct: 1298 RERLQE 1303 >gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium 1_1_47] gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB [Parasutterella excrementihominis YIT 11859] gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium 1_1_47] gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB [Parasutterella excrementihominis YIT 11859] Length = 231 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 4/124 (3%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M + +L+V+ + ++ + G V +A +V EA++ E P+ +++D + Sbjct: 2 MTTSVLIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAK-PDIILLDWMLPDC 60 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L+++ +R + V L + + G AGA+ ++ KPF+ L +R + Sbjct: 61 AGLDWLRELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAV 120 Query: 118 PQMQ 121 + + Sbjct: 121 IRRK 124 >gi|261879166|ref|ZP_06005593.1| response regulator PhoB [Prevotella bergensis DSM 17361] gi|270334265|gb|EFA45051.1| response regulator PhoB [Prevotella bergensis DSM 17361] Length = 231 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + ++ + G+ V +A S EA E + L++D M G+ F Sbjct: 9 SILVVDDEDDLCEILKFNLETEGYHVEKANSAEEALEM--DLPAFDLLLLDVMMGGMSGF 66 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P ++ + +L + G GA+ ++ KPF+ + +R + + Sbjct: 67 AMAQKLKANPATANIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRVRAVIRR 126 Query: 121 QKSKDENQ 128 +D Q Sbjct: 127 TDDRDHEQ 134 >gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] Length = 227 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD ++ + G+ V A++ EA + + +++D M + Sbjct: 1 MKEKILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLI-GDYNYDLVILDIMMPKL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + + +L + + I G GA+ ++ KPF L ++ + Sbjct: 60 DGILTCIKIREKF-TMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLR 118 Query: 120 MQK 122 K Sbjct: 119 RYK 121 >gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator [Acinetobacter baumannii AB0057] gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB307-0294] gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB056] gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB058] gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB059] gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter baumannii AYE] gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator [Acinetobacter baumannii AB0057] gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB307-0294] gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + + R GF V +A ++ PN +++D + + Sbjct: 1 MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTNF-QQRKPNLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQF 129 + + K E + Sbjct: 117 RRLERKAEPEQ 127 >gi|124006366|ref|ZP_01691200.1| response Regulator Receiver Signal Transduction Histidine Kinase [Microscilla marina ATCC 23134] gi|123988023|gb|EAY27694.1| response Regulator Receiver Signal Transduction Histidine Kinase [Microscilla marina ATCC 23134] Length = 382 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + V D G+ + A A E + P+ +++D M G+ Sbjct: 9 MKGKILIVDDTPANIGVILSYLRDQGYKMLVAEDGESAIEQVGF-MKPDLILMDIMMPGL 67 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++ D+ + ++ + + G + GA ++ KPF +E + ++ Sbjct: 68 NGFETCTSLKANKETADIPIIFMSALNETVDKVKGFQLGAVDYITKPFQQEEVLARIKTH 127 Query: 118 PQMQKSKDENQFLDA 132 +M+ + E + +A Sbjct: 128 LKMESLQKELKLTNA 142 >gi|329928021|ref|ZP_08282025.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328938125|gb|EGG34522.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 329 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 LLVD + +V R L + + + A + +A E + ++ D M G+ Sbjct: 2 LLVDDDPVNLQVLRSLLSAENYHLISAGNGAQALEHIRSGQGIDLVITDWMMPGMSGLQL 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 VRQ ++ + L + + G +AGAN FL KP + LR +R L ++++ Sbjct: 62 CMTVRQQFTLFELPMLMLTARSLPDDVRTGLQAGANDFLRKPVEADELRARVRNLLELRR 121 Query: 123 SKDE 126 S + Sbjct: 122 SVRQ 125 >gi|261867362|ref|YP_003255284.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390893|ref|ZP_06635227.1| transcriptional regulatory protein CpxR [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412694|gb|ACX82065.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951427|gb|EFE01546.1| transcriptional regulatory protein CpxR [Aggregatibacter actinomycetemcomitans D7S-1] Length = 231 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ L + GF V A + EA E + + +++D M + Sbjct: 1 MAKILLVDDDAELTELLAQLLDLEGFQVNVANNGKEALELL--DHSYDLILLDIMMPVLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++Q+ V L D I G GA+ +L KPFN L ++ + + Sbjct: 59 G-IETLKQIRKNYSTPVMMLTARGDDIDRILGLELGADDYLPKPFNDRELVARIKAILRR 117 >gi|260469837|ref|ZP_05813989.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259028390|gb|EEW29714.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 230 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ D +R+V G + A E+ P+ +V+D M + Sbjct: 5 ILVADDDPHIREVICFALEKAGMKTAAVSDGAAALRAIERHT-PDLVVLDIGMPEMDGLE 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +DV V +L + I G G + ++ KPF+ L + + + Sbjct: 64 VCRRLR---HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRA 120 Query: 122 K 122 + Sbjct: 121 R 121 >gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 236 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 11/138 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++++VD +R+V GF A +A E E P+ +++D M + Sbjct: 6 TIMVVDDDAHIREVVGFALKKEGFQTIPAKDGLQAVEMF-AEATPDLVILDILMPEMDGT 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +DV + +L + D I G G + ++ KPF+ L ++ + Sbjct: 65 EVCKKIRAH---SDVPIIFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKARLRR 121 Query: 121 QKSKDE-----NQFLDAI 133 + ++ + + L AI Sbjct: 122 RLTEAKPAVSLQEKLGAI 139 >gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] Length = 1390 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + +R L G+ V + +A E E LP+ +V D M G L Sbjct: 638 RILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAE-LPDLVVSDVMMPGLDGL 696 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +A +R + V L E I G AGA+ +L+KPF L + + Sbjct: 697 ELVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHANVAL 756 Query: 121 QKSKDENQF 129 + ++ + Sbjct: 757 ARLRNHHSR 765 >gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 230 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D VR + + G+ V A+ E + + P+ +++D M Sbjct: 3 QTILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGL-IIARRVRPDLVLLDIMMPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ R+ V L +D + G GA+ ++ KPF+ + L +R + + Sbjct: 62 FGFLQAYRRE---HQAPVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLR 118 Query: 120 MQKSKDE 126 + + Sbjct: 119 RTAAARQ 125 >gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 260 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A E + + +V+D + G+ Sbjct: 36 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALE-AGMQGAIDLVVLDLGLPGMD 94 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 95 GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 154 >gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 260 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A E + + +V+D + G+ Sbjct: 36 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALE-AGMQGAIDLVVLDLGLPGMD 94 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 95 GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 154 >gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 230 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G++V +A + EA + E E + +++D M V Sbjct: 5 TILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVE-ERQIDLIILDVMMPVVNGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + L +V+ I G GA+ +L KPFN L ++ + Sbjct: 64 DACIKIREQY-NTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRR 120 >gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus ATCC 53653] gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LL + +R G+ V + EA +E P+ +V+D M GV Sbjct: 3 NTVLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREH-PDVIVLDVMMPGVDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R G + L V+ I G AGA+ ++ KPF+ E + +R L + Sbjct: 62 IQVCRVLRA--EGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|254507777|ref|ZP_05119908.1| response regulator [Vibrio parahaemolyticus 16] gi|219549302|gb|EED26296.1| response regulator [Vibrio parahaemolyticus 16] Length = 240 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ G++V + + E+ P +++D + G F Sbjct: 4 KILVVDDDQEIRELLDEYLTKSGYLVDTVADGEQLKLHLEQTGYPELVLLDVMLPGDDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++R+ V + L D I G GA+ ++ KPFN L ++ + + Sbjct: 64 TLCQYIRRESS---VPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKAVLRR 120 Query: 121 QKSKD 125 + D Sbjct: 121 VQLSD 125 >gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 239 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + + LDA Sbjct: 124 DALARDSRLDA 134 >gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 231 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++LLVD VR+ + F V A+ +A E +K P+ ++ D M Sbjct: 6 NILLVDDEPGVRESVQAYLEYADDFQVQVASHANQAWEILQKNP-PDLVISDIMMPEVDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +F+ +R P + V +L I G AG +++L KPF+ E L ++ L + Sbjct: 65 YQFLKKLRDDPRYEAIPVVFLTARGMTTDRIQGYNAGCDAYLSKPFDPEELEAIVKNLLE 124 Query: 120 MQKSKDE 126 +K+ + Sbjct: 125 RRKATSQ 131 >gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 MD +L+V+ +R + F V EA + E E K P +V+D + G Sbjct: 1 MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PEVVVLDIMLPGVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ ++ + L + ++G GA+ +++KPFN L ++ + Sbjct: 60 GLEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117 Query: 119 QMQKSKDE 126 + + E Sbjct: 118 RRVNAVKE 125 >gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A +A + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLVILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] Length = 237 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA + E+ P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKV-NEIDPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 Query: 122 KSKDEN 127 + Sbjct: 121 DIVQKQ 126 >gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] Length = 227 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + + + + VF A S EA E + P+ +++D M G Sbjct: 1 MKEKILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVEKAKLN--PDLILLDVMMPGK 58 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +R + + + +L + + E +I G G + ++ KPF+ L+ + Sbjct: 59 NGYEVCREIRDI---VNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAH 115 Query: 118 PQM 120 + Sbjct: 116 LRR 118 >gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 224 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ + GF EA EA + + +V+D M + Sbjct: 1 MPTILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPV-DLVVLDIMMPMMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ + L + + + G G + +L KPF+ L ++ L Sbjct: 60 GWTLCKELRR--ANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALL 117 Query: 119 QMQK 122 + + Sbjct: 118 KRYR 121 >gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 225 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + E+ + +++D M + F Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|119898694|ref|YP_933907.1| two-component response regulator [Azoarcus sp. BH72] gi|119671107|emb|CAL95020.1| probable two-component response regulator [Azoarcus sp. BH72] Length = 301 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD I RK+ L + V A S +A E + + + +++D M G+ Sbjct: 7 RILVVDDERINRKLLSELLEEH-HDVVIAKSGEQALERVQADSAVDLILLDVVMPGMSGH 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ DV V ++ + G GA ++ KPF+ +R + + Sbjct: 66 DVLRRLKASDATKDVPVIFITSLNSVDDEEIGLDLGAADYITKPFHPGIVRLRVENHLRF 125 Query: 121 QKSKDENQFLD 131 + + + L Sbjct: 126 VRQRKILETLA 136 >gi|89094274|ref|ZP_01167216.1| chemotaxis response regulator [Oceanospirillum sp. MED92] gi|89081529|gb|EAR60759.1| chemotaxis response regulator [Oceanospirillum sp. MED92] Length = 120 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+VD S +R + G+ V EA + EA + + ++ D +M + Sbjct: 1 MASILVVDDSASLRNMVTFTLKQEGYQVVEAGNGQEALAKA-QGARFDLVLTDVNMPIMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R++P + L E + G AGA +L+KPFN E L ++ + Sbjct: 60 GITLCAELRKLPAFKFTPILVLTTESSADMKQRGKAAGATGWLVKPFNPEKLISTIKRVV 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501] gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 7/131 (5%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + G+ V+ A + E E K+ P+ +++D M Sbjct: 1 MKNQDIKILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKN-PHLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R+ D + +L + +AG AGA+ ++ KP + + Sbjct: 60 PEMDGIEACEIIRKTKGLQDSIIAFLTARNEDYSQVAGFDAGADDYITKPIKPKVFISKV 119 Query: 115 RELPQMQKSKD 125 + L + K+++ Sbjct: 120 KALLRRLKNQE 130 >gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 232 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V GF A P+ ++D + G+ Sbjct: 6 QRILVVEDEPDIADVVLDYLRHSGFEAEHVADGHAAIARLTGPTPPDLTLLDIMLPGMDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ TD + L V+ + G GA+ ++ KPF+ + +R + + Sbjct: 66 L-EVLRQARRRTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRS 124 Query: 122 KSK 124 ++ Sbjct: 125 TAR 127 >gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 224 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG--PDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 119 QMQKSKD 125 + K + Sbjct: 117 RRVKKTE 123 >gi|224535689|ref|ZP_03676228.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus DSM 14838] gi|224522699|gb|EEF91804.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus DSM 14838] Length = 1113 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + ++V + EA E E P+ ++ D M + Sbjct: 844 RRILIVEDNDDLRIYLVNTL-GEDYLVQSCHNGKEALEIL-SEFKPDLVLSDIMMPEMSG 901 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A ++ + + V L D + M+ G + GA+ ++ KPF+ L+ ++ L Sbjct: 902 DELCAAIKGNIETSHIPVLLLTALGDEKNMLEGLKIGADDYMAKPFSISILKASINRLIT 961 Query: 120 MQ 121 + Sbjct: 962 NR 963 >gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 234 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R+V R G V EA EA + P+ +V+D M L Sbjct: 4 RILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAAD-RPDLIVLDVGMPEFDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ G+DV + +L + + G G + ++ KPF+ L + + + Sbjct: 63 DVCREIRK---GSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRR 119 >gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917] gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917] Length = 256 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR+V G+ V A +A E ++ P+ +V+D + + F Sbjct: 13 TILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDS-PDLVVLDVMLPKLDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 72 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 128 >gi|329957277|ref|ZP_08297797.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522990|gb|EGF50093.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1363 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R F EA + EA E + + + ++ D M + Sbjct: 1114 TILIVEDNQEIRHYLSSGLAGL-FNTLEAGNGEEALEKLKDNEV-DIIITDVMMPVMDGI 1171 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++Q + V L + D + + G + GA+ ++ KPF L ++ + + Sbjct: 1172 KLCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFAITVLTSKIQNMMRT 1231 Query: 121 QK 122 ++ Sbjct: 1232 RR 1233 >gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 269 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD VR+V G+ V A EA +E P+ +V+D + + F Sbjct: 25 TLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQE-QPDLVVLDVMLPKLDGF 83 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 84 AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140 >gi|319652565|ref|ZP_08006680.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317395819|gb|EFV76542.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 223 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 7/123 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D +RK+ F G+ + A EA EK+ P+ +++D +M Sbjct: 1 MKKILIIDDEADMRKLLADYFEVNGYHIMTAKDGNEAVRQAEKQ--PDIILLDINMPEIN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ +R + +L V+ I+G +AG + ++ KPF+ L + Sbjct: 59 GLDVCRKIRS---YVSCPILFLTARVEDADKISGFQAGGDDYIQKPFSIHELGARVDAHL 115 Query: 119 QMQ 121 + + Sbjct: 116 RRE 118 >gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + + R GF V +A ++ PN +++D + + Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSF-QQRKPNLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQF 129 + + K E + Sbjct: 117 RRLERKAEPEQ 127 >gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 232 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 9/134 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R+ + + G VFEA +A +E + +++D M + Sbjct: 4 NNVLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDAL-MLLQEQEIHLILMDIMMPKMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 A + D+ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 63 IKATFKIREK-KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRY 121 Query: 121 ------QKSKDENQ 128 +++ +E Q Sbjct: 122 VRFASYKRNTEELQ 135 >gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease [Bacillus anthracis CI] gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease protein [Bacillus cereus biovar anthracis str. CI] Length = 841 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 620 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 678 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 679 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKR 735 Query: 121 QK 122 + Sbjct: 736 YQ 737 >gi|171914581|ref|ZP_02930051.1| putative two component system histidine kinase/response regulator fusion protein [Verrucomicrobium spinosum DSM 4136] Length = 380 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD ++ +L GF V A+ EA C +P+ +++D M + F Sbjct: 14 VLVVDDQVRNLQMVTNLLTHRGFEVITASGGREALN-CLATKIPDLILLDVIMPEMDGFE 72 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V V +L D ++ G G ++ KPFN+ L + Q+ Sbjct: 73 VCRQIKSNRATSHVPVVFLSGSADQSSIVRGFETGGVDYIAKPFNKAELLARVLTHVQLV 132 Query: 122 KSKDENQ 128 +++ ++ Sbjct: 133 QAQRRHE 139 >gi|119493875|ref|ZP_01624440.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] gi|119452387|gb|EAW33578.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] Length = 335 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + + + + G+ V +A + A + E P+ +++D M + Sbjct: 12 SILIVDDTPNNLRFLSSMLLEHGYEVRKAINGQMALRSAQAEP-PDLILLDVRMPDMSGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 E +++ P ++ V +L + + GA ++ KPF + + ++ Sbjct: 71 EVCHALKEKPETREIPVIFLSALDHEKDKVIAFEMGAVDYVTKPFQFQEVLSRVKTHITI 130 Query: 119 --QMQKSKDENQFLDA 132 Q + + L+ Sbjct: 131 QHQRKLLMQQKARLEE 146 >gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 241 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G A+ EA + + L P+ +++D + G+ I Sbjct: 14 VLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLF-RLLRPDLVLLDIHLPGMDG-I 71 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R + + V + D + R GA+ +++KPFN + +R + + ++ Sbjct: 72 DVLRAIRDDSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQA 131 Query: 124 KD 125 + Sbjct: 132 RK 133 >gi|303241292|ref|ZP_07327797.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] gi|302591131|gb|EFL60874.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] Length = 310 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + + K+ + + + V A++ + + +E P+ +++D M G+ Sbjct: 4 KKILIIDDTEFMTKLITDILSSADYDVVIASNGLQGIQKVREEK-PDLVILDVVMPGMDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + + L + + + +AG GA+ +++KPFN L +R + Sbjct: 63 FEVCKILRDDESNNLMPIIMLTAQDNEDDKLAGLEIGADDYIIKPFNGRELVSRVRNTLK 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A+ EA +V+D M + Sbjct: 1 MK-ILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTNPDIALMVLDVMMPNMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + + L + I G GA+ ++ KPFN + +R L + Sbjct: 60 GL-EVVKIVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 ++ ++Q Sbjct: 119 AENSVQDQ 126 >gi|298244929|ref|ZP_06968735.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297552410|gb|EFH86275.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 245 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 7/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--- 58 +L+VD +++V R G+ VF A EA E + P+ +++D M G Sbjct: 6 KRILVVDDEEPIQRVLRKNLLAGGYDVFVAGDGREALEMVKLH-QPDLILLDLCMPGELD 64 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ VR G + L + + + GA+ +L KPF E L +R Sbjct: 65 GLDVCVEVRHR--GQKPPIIVLSAMSEERQKVRALDLGADDYLTKPFGSEELMARVRACL 122 Query: 119 QMQKSKDENQFLDAI 133 + +S +E + + + Sbjct: 123 RRSQS-NEGEEIQQV 136 >gi|295093812|emb|CBK82903.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 229 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + G+ V++A + EA + +++D M + Sbjct: 1 MYNILICDDEKDIVSAIEIYLKTAGYSVYKAYNGMEAVDMVNSND-IQLVLMDVMMPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++V V L + + + G GA+ ++ KPFN L ++ + Sbjct: 60 GITAMAKIRES-SNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRR 118 >gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALD-AGLQGGIDLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|228989718|ref|ZP_04149700.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228995917|ref|ZP_04155575.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003534|ref|ZP_04161352.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757772|gb|EEM06999.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763889|gb|EEM12778.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228770052|gb|EEM18634.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 223 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +A S EA E +++ + +++D M + Sbjct: 1 MIKILLVDDEERMLRLLDLFLSPRGYFCMKANSGIEALELIQQKN-FDIILLDVMMPNMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ+ ++V + L M+ G GA+ ++ KPF+ + L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLVARIEAVL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|240145086|ref|ZP_04743687.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257202757|gb|EEV01042.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|291537822|emb|CBL10933.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+ D + + G+ VFEA + EA E KE + +++D M + Sbjct: 1 MYSILVCDDEKDIVSALKIYLMADGYQVFEAYNGKEALEVL-KEQDIHLVLMDIMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A V+ ++V V L + + + G GA+ ++ KPFN ++ ++ + Sbjct: 60 GIAAMVKIRE-TSNVPVILLTAKSEDTDKVLGLTVGADDYITKPFNPIEVQARVKSQLRR 118 >gi|198275803|ref|ZP_03208334.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135] gi|198271432|gb|EDY95702.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135] Length = 1393 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 8/129 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 S+L+V+ +R + G F V ++ EA + +P+ ++ D M Sbjct: 1133 SILIVEDEDEIRNYL---LTELGSHFRVLSCSNGKEALDLIM-HHMPDLVLSDIMMPEVN 1188 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + ++Q + V L + + I G GA++++ KPFN + L + L Sbjct: 1189 GITLLRKLKQNIKTNHIPVILLTAKNSEKDYIEGLSLGADAYIAKPFNLDILITTIENLI 1248 Query: 119 QMQKSKDEN 127 + ++ N Sbjct: 1249 KNREILRNN 1257 >gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 238 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + +V+ ++++ ++ GF V + + E+ +P+ ++D + G+ Sbjct: 6 IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEY-SSGKVPDLFILDIMLPGIDGLE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++Q + + L + + + G GA+ ++ KPF+ L ++ L + Sbjct: 65 VCRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKALFRRV 124 Query: 122 KSKDE 126 + +E Sbjct: 125 NTTNE 129 >gi|91977506|ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palustris BisB5] gi|91683962|gb|ABE40264.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisB5] Length = 457 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + F V A++ +A E C + + +++D M + F Sbjct: 4 RILVVDDIPANVRLLEARLSAEYFDVVTASNGAQALEICARAEC-DIVLLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 67.9 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 4/112 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + L + + EA + +V + L Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEANPSEALFHAAEGNYDLLIVSLGLEDFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112 + R + V + + + + + G G N +LL+P ++ L Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 239 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLVD + ++ + G+ A + E E +++++D + + Sbjct: 1 MKKHVLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEH-FDFILLDIMLPQL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R G + + + D + GA+ +L KPF+ L ++ + + Sbjct: 60 DGIEVCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILR 119 Query: 120 MQK 122 + Sbjct: 120 RTE 122 >gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] Length = 222 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD R G+ V AT+ EA + EK P+ +V D +M + F Sbjct: 4 TLLVVDDDLGTRLSISDYLEMSGYFVISATNGQEALQLVEKH-QPHLIVTDIAMPEMDGF 62 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR P + V +L E+ I G + G +++L KPF E L +R L + Sbjct: 63 ELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLLER 122 Query: 121 QKSKD 125 + + Sbjct: 123 SQLIE 127 >gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 224 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 119 QMQKSKD 125 + K + Sbjct: 117 RRVKKTE 123 >gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 242 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 4/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-VL 60 S+++V+ + ++ G+ V A S EA + E E ++ ++D + G + Sbjct: 4 KSIMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLE-EKDTDFFIVDIMLPGSMD 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F I ++ + V L + D +AG G++ ++ KPFN L ++ + Sbjct: 63 GFDLIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIF 122 Query: 119 QMQKSKDENQ 128 + Q + + + Sbjct: 123 RRQAASAQMK 132 >gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca DW4/3-1] gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob [Stigmatella aurantiaca DW4/3-1] gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca DW4/3-1] gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + ++ GF A + A E P+ +++D + Sbjct: 1 MSHVLIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAA-SEHPPHLVLLDLMLPDIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R L DV V L + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GTEVCRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAIL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|23016749|ref|ZP_00056502.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 242 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V A R+ E + +++D + G Sbjct: 1 MTHVLIVDDDPEICALLTQFLTGQGYTVATAGDGDTMRQALVNEAA-DLVILDLMLPGED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 H+R T + + L + G GA+ +L KPF+ L +R + Sbjct: 60 GLSLCRHLRA---TTSLPIIMLTAMGSETDRVVGLEMGADDYLAKPFSTRELLARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1] gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + + R GF V +A ++ PN +V+D + + Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASF-QQRKPNLMVLDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQF 129 + + K E + Sbjct: 117 RRLERKAEPEQ 127 >gi|158335457|ref|YP_001516629.1| sensory box/response regulator [Acaryochloris marina MBIC11017] gi|158305698|gb|ABW27315.1| sensory box/response regulator, putative [Acaryochloris marina MBIC11017] Length = 572 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + + G+ EA + + ++ P+ +V D M + Sbjct: 1 MPKILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSP-PDLIVCDVMMPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + +R P + + +L + D + G GA+ ++ KPF L A+ Sbjct: 60 GFDVLKGLRANPGIGSIPMIFLTAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARL 119 Query: 119 QMQKSKDEN 127 + Q + Sbjct: 120 KKQALVTQQ 128 >gi|148654863|ref|YP_001275068.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] gi|148566973|gb|ABQ89118.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] Length = 331 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + +R+ G+ A + EA E P+ +++D +M + F Sbjct: 4 KILIADDNQAMREAIIRFVEAEGYTALAARNGREALALAL-EKQPDLVLLDVTMPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + L + + G AGA+ FL KPF+ LR ++ + Sbjct: 63 EVCRRLKNDPRTALIPITMLTVLDSPDHRRYGIEAGADDFLTKPFDERLLRARIQSQLRT 122 Query: 121 QKSKDENQFLDAI 133 ++ D+ + +++ Sbjct: 123 KRLTDQLERTESV 135 >gi|299148418|ref|ZP_07041480.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298513179|gb|EFI37066.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1511 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F+ + V EA E K LP+ ++ D M +E Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALK-YLPDIIISDVMMPEKDGIEM 1295 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355 Query: 122 KSKD 125 K + Sbjct: 1356 KLQS 1359 >gi|237717953|ref|ZP_04548434.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452755|gb|EEO58546.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1511 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F+ + V EA E K LP+ ++ D M +E Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALK-YLPDIIISDVMMPEKDGIEM 1295 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355 Query: 122 KSKD 125 K + Sbjct: 1356 KLQS 1359 >gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402] gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7] gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402] gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7] Length = 233 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+VD + +R+V L + G+ V EA EA + + ++D M Sbjct: 4 NKILIVDDNPEIREVLNVLLSSEGYDVIEAKDGQEAIDMV--SDDIDLYILDIMMPIING 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ ++ + +L + G +G + +L KPF+ L ++ L + Sbjct: 62 YQACVEIRKK---SNAPILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58] gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58] Length = 233 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 LLV+ + ++ F F V EA +E +P+ +++D +E +E Sbjct: 7 LLVEDDAALAELLIWHFKREDFDVSHTVDGEEAL-LMAQETVPDIVLLDWMVESLSGIEV 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+M +V + L + E + G GA+ ++ KPF+ L + + + + Sbjct: 66 CRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVR 125 Query: 123 SKDENQFL 130 + L Sbjct: 126 PALAGETL 133 >gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G +A + EA E E + +++D M + Sbjct: 4 NILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLE-EQAFDLIILDIMMPEMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + L + + I G +GA+ ++ KPFN L ++ + K Sbjct: 63 EACMKIREE-QHMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRYK 121 >gi|302670595|ref|YP_003830555.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395068|gb|ADL33973.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 225 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 5/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +RK+ + G++V EA +A + ++ + +++D M Sbjct: 5 KILVVDDESRMRKLVKDFLVKDGYLVVEAEDGQQALDIFYEDKDISLIILDVMMPKRDGW 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + V + L + + + G G + ++ KPF+ + L + + + Sbjct: 65 EVCKEIR---TNSKVPIIMLTAKAEERDELLGFELGVDEYISKPFSPKILAARVSAILRR 121 Query: 121 QKSKDENQFLD 131 NQ ++ Sbjct: 122 TNQAANNQIME 132 >gi|225181287|ref|ZP_03734732.1| response regulator receiver modulated diguanylate cyclase [Dethiobacter alkaliphilus AHT 1] gi|225168067|gb|EEG76873.1| response regulator receiver modulated diguanylate cyclase [Dethiobacter alkaliphilus AHT 1] Length = 305 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M + ++D S + K+ L G V T +A + P+ +V+D M Sbjct: 1 MPKITVIDDSITIVKMLTDLLTQDGHQVCGMTEAADALDKVV-GFSPDLIVLDVIMPDVN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + + + L + +AG AGA+ +++KPF + + +R Sbjct: 60 GYDLCRMLRNDTRTSHLPIMMLTSRGEVTDKVAGLEAGADDYIVKPFEPQEVLARIRTHL 119 Query: 119 QMQKSKD 125 + K Sbjct: 120 RRAKQHK 126 >gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|300867489|ref|ZP_07112140.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300334483|emb|CBN57308.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 427 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 6/137 (4%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + + L + G+ V +A + A + +LP+ +++D +M Sbjct: 1 MTKTADILIVDDTPDNIRFLSSLLVEQGYNVRKALNGKMALTAVKA-VLPDLILLDINMP 59 Query: 58 GV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ E H++ + V V +L + + G ++ KPF E + ++ Sbjct: 60 GMNGYEVCEHLKNDAKTSAVPVIFLSALDGVVDKVKAFQIGGVDYITKPFQLEEILARIQ 119 Query: 116 ELPQMQKSKDENQFLDA 132 +++ + + Q +A Sbjct: 120 SQLKIKTLQTKLQVQNA 136 >gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family [Rhodobacter sp. SW2] gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family [Rhodobacter sp. SW2] Length = 230 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LLV+ R+V + G+ V +A EA + E LP+ +V+D M LE Sbjct: 9 VLLVEDEAAQREVLAYNLAAEGYRVVQAGDGEEALDLIGDE-LPDLIVLDWMMPKVSGLE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P V + L + + G GA+ +++KP++ L +R + Sbjct: 68 VCRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLRRA 127 Query: 122 K 122 + Sbjct: 128 R 128 >gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 224 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 116 Query: 119 QMQKSKD 125 + K + Sbjct: 117 RRVKKTE 123 >gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 224 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 116 Query: 119 QMQKSKD 125 + K + Sbjct: 117 RRVKKAE 123 >gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K + V A EA E +K + +++D + + Sbjct: 3 KKVLVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEY-DIVLLDVMLPKMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R +++ + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQRIRE-FSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRS 120 Query: 122 KSKD 125 + Sbjct: 121 SKRA 124 >gi|152964302|ref|YP_001360086.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] gi|151358819|gb|ABS01822.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] Length = 806 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + L+VD ++ + G V A+ EA + E +P+ +V D +M G+ Sbjct: 17 RTALVVDDDEMISHLVSAGLRAAGMTVVTASDGREALQRL-AEAVPDVVVSDVNMPGMDG 75 Query: 62 FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R P V + +L + +A R GA+ ++ KPF+ L + Sbjct: 76 FALVSRLRAEPATRAVPLVFLTSRAEASDALAALRLGADDYVRKPFDLTELVARVVAKLD 135 Query: 120 M 120 Sbjct: 136 R 136 >gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN] gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae] gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L VD VR+ R + G+ V A EA E ++ P+ LV+D M + Sbjct: 2 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARD-RPDALVLDVMMPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ + L + +AG AGA+ +L KPF E L +R L + K Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 120 Query: 123 SKDENQ 128 D + Sbjct: 121 PDDAAE 126 >gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA E +++D M G+ Sbjct: 1 MK-ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMPGMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I V+++ + + + L + + I G +GA+ ++ KPFN + ++ L + Sbjct: 60 G-IEVVKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QK 122 + Sbjct: 119 TE 120 >gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 237 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD + + + G+ V A EA + E+E P+ +++D + Sbjct: 3 KTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEE-QPDLMLLDIMLPKRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 249 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ ++R++ G+ V A A E EL + LV+D + Sbjct: 19 RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G + + L + + G GA+ +L KPF+ + Sbjct: 79 PQINGLDICRLLRHQ--GNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARC 136 Query: 115 RELPQMQK 122 R L + Q+ Sbjct: 137 RALLRRQR 144 >gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 234 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + GF V A+ EA + + P+ ++D M + Sbjct: 8 TRVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIA-RSFHPDAFILDVMMPRMDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G D V +L + + I G GA+ ++ KPF+ E + ++ + + Sbjct: 67 FTLLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRR 125 >gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603] gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603] Length = 238 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDIMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 65 EVCKGIREK---KATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121 >gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB [Methylophilales bacterium HTCC2181] gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB [Methylophilales bacterium HTCC2181] Length = 231 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + ++ + GF + S A E ++ LP+ +++D + G+ Sbjct: 4 SILIVEDEESILELIAINLHQAGFNPIRSLSAEFA-EKIIQKNLPDLIILDWMLPGMDGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + + L + + + + G GA+ ++ KPF+ + L ++ + + Sbjct: 63 EFAKRIRGSSTTRKIPIIMLTAKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAILRR 122 >gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] Length = 233 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + V + F G+ S E + KE + +++D + + Sbjct: 1 MK-ILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESW-DLVIVDWMLPVMD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++ + V + L + + G GA+ ++ KPF+ L ++ + Sbjct: 59 GVTLCRKIREL---STVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVT 115 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 116 RRYQADSSKQ 125 >gi|270339712|ref|ZP_06005766.2| two component system sensor histidine kinase [Prevotella bergensis DSM 17361] gi|270334042|gb|EFA44828.1| two component system sensor histidine kinase [Prevotella bergensis DSM 17361] Length = 1372 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+V+ + +R+ D + V EA++ EA E + E + ++ D M + F Sbjct: 1124 TLLIVEDNTDIRRYLVDALCDQ-YHVVEASNGKEAMEKLDAET-ISLVLTDVMMPEMDGF 1181 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V L +V+ + + G GA+ ++ KPF+ L+ +R ++ Sbjct: 1182 ELCKRIKRHIQTCHIPVIILSAKVETREQLDGLLIGADDYITKPFSISILKAKIRNTLRI 1241 Query: 121 QKS 123 +++ Sbjct: 1242 REA 1244 >gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603] gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A A + E E + +++D M + Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLE-EKEFDLIILDIMMPNMDGI 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 68 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 124 >gi|298491243|ref|YP_003721420.1| GAF sensor-containing adenylate/guanylate cyclase ['Nostoc azollae' 0708] gi|298233161|gb|ADI64297.1| adenylate/guanylate cyclase with GAF sensor(s) ['Nostoc azollae' 0708] Length = 1180 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 S+L+VD + +R + G+ + A + E + + P+ ++ D M Sbjct: 824 QSVLVVDDNPDMRSYVAEILAHSGYQIITARNGYEGYNIA-QGVRPDLIITDLMMPLLTG 882 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E I +R + + L +VD E I G GA+++L KPFN L +R L Sbjct: 883 IEMIQMIRSQDQVRGIPIILLTAKVDEETRIEGIEHGADAYLGKPFNDRELLAEVRNLLA 942 Query: 120 MQKSKDENQFLD 131 ++++ E + L+ Sbjct: 943 LKEN--EKRVLE 952 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 13/143 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + F + V A S A E +E ++ D+ M + Sbjct: 10 KILVVDDEPDNLDLLYRSFYRE-YQVLRANSGPAALELLAQEGDIAVIISDQRMPMMSGT 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP--- 118 D+ L D E ++ +G ++ KP+ E L+ +R+ Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINSGKVFKYVTKPWEAEELKAVVRQALDTH 128 Query: 119 --------QMQKSKDENQFLDAI 133 ++ ++ L+A+ Sbjct: 129 NVLKARTRELTRTLRRESLLNAV 151 >gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 250 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 10/127 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC------EKELLPNYLVIDESM 56 +L+V+ ++R + + G+ V A+ A E E E L + LV+D + Sbjct: 20 RILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLML 79 Query: 57 E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 L+ +R G + + L +V + G GA+ +L KPF+ L Sbjct: 80 PSVNGLDICRLIR--YQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQ 121 R L + Q Sbjct: 138 RALLRRQ 144 >gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 235 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D +R + + ++V A + A + + P+ +V+D + Sbjct: 1 MKKILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDA-FGPDLVVLDLMLPDCS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + V V L + + + G GA ++ KPF+ L ++ + Sbjct: 60 GYDLCKEI---TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVIL 116 Query: 119 QMQKSKDE 126 + +SK+E Sbjct: 117 RRNESKEE 124 >gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134] gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134] Length = 232 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ ++ G+ V A + EA K LP +++D M + Sbjct: 8 KVLVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAI-KVAKTFLPQLILMDIMMPKMDGV 66 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+M D ++ YL V+ +A GA+ ++ KP L + L + Sbjct: 67 EAGRQLREMTEIADTYIIYLTARVEEYSELAAFDVGADDYITKPIRPRALLSRIAALFRR 126 Query: 121 -QKSKDENQFLDAI 133 QK +N+ D I Sbjct: 127 EQKKHQKNEKKDKI 140 >gi|148264719|ref|YP_001231425.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398219|gb|ABQ26852.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 457 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R+ L G+ V +A + A + E + + +V D SM G+ Sbjct: 3 TKILVVDDEQSMREFLAILLEREGYYVAQAENAEVALKLLESDTY-DLVVSDVSMPGLNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V + E+ + + GA ++ KPF E ++ ++ + Sbjct: 62 MALLARIKTTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVKNALEKS 121 Query: 122 KSKDENQFLD 131 + EN+ L Sbjct: 122 SLQKENRRLK 131 >gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3] gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 241 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + +V+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLIVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G+ + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + ++ R G V EA ARE + ++D + GV Sbjct: 1 MPNILIVDDDPAILEILRAYLKAEGHTVLEACDGYSAREQL---PRADLAILDWMLPGVS 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G + + L + E + G G + +++KPF+ + +R L + Sbjct: 58 GVDLAREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRR 117 Query: 121 QKSKDE 126 ++E Sbjct: 118 VGVQEE 123 >gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V + GF V T+ + +KE PN +++D + G+ Sbjct: 3 KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PNLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ +L KPF+ L ++ + + Sbjct: 62 EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2] gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2] Length = 240 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 + LV+ + + + D G+ + A E EK + + +++D + G Sbjct: 5 KKIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKH-VWDAVILDLMLPGVDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRIRQMSFY--LPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFR 121 Query: 120 MQKSKDENQFLDA 132 Q++ +N ++A Sbjct: 122 RQEAMSQNLRMEA 134 >gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 232 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 4 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 119 QMQKSKDE 126 + + DE Sbjct: 121 RRIEVHDE 128 >gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] Length = 223 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +++VD +R++ R + GF EA + EA + E + + V+D M G+ Sbjct: 1 MKSKIMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQ-YIDLAVVDIMMPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F V QM + V L + + + G G + ++ KPF+ + L ++ + + Sbjct: 60 DGF-ELVEQMRQYREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTILK 118 Query: 120 MQKSKDEN 127 N Sbjct: 119 RYSINSSN 126 >gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus amyloliquefaciens LL3] Length = 250 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D +R++ R + GF V EA A + E + +++D M + Sbjct: 26 MAVILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTH-IDLIILDVMMPKMD 84 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR TD+ + L + + + G +GA+ +L+KPF L ++ L Sbjct: 85 GFEVSEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALL 141 Query: 119 QMQKSKDE 126 + + E Sbjct: 142 KRYRITAE 149 >gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ D +R+V G A + + P+ +V+D M + Sbjct: 5 ILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGR-RAPDLVVLDIGMPEMDGLE 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + +DV V +L + I G G + ++ KPF+ L + + + Sbjct: 64 VCRRLRHI---SDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRA 120 Query: 122 K 122 + Sbjct: 121 R 121 >gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 5/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + G+ V E K P+ +V+D + + Sbjct: 4 KKILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHL-KPFRPDLIVLDLMLPKMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D I+G GA+ ++ KPF+ + L ++ + + Sbjct: 63 IQVCRELRRQ--NNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFR 120 Query: 120 MQKS 123 ++ Sbjct: 121 RVQA 124 >gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides fragilis 638R] Length = 224 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LLV+ + +FG V A EF +E + L++D M + Sbjct: 1 MAKILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQE-AFDLLILDIIMPKMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE RQ V L E ++ G +GA+ +L+KPF+ + L ++ + Sbjct: 60 GLELCRLYRQQYGYL-TPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAIL 118 Query: 119 QMQKSKDENQF 129 + + Q Sbjct: 119 RRGREDSVQQL 129 >gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 229 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + L GF T EA + + +++D + G+ Sbjct: 1 MTHVLIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] Length = 1390 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + +R L G+ V + +A E E LP+ +V D M G L Sbjct: 638 RILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAE-LPDLVVSDVMMPGLDGL 696 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +A +R + V L E I G AGA+ +L+KPF L + + Sbjct: 697 ELVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHANVAL 756 Query: 121 QKSKDENQF 129 + ++ + Sbjct: 757 ARLRNHHSR 765 >gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341] gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341] Length = 234 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + + G+ V A +A E E P+ +++D + + Sbjct: 5 KILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSEN-PDLILLDLMLPKKDGM 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR ++ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 64 EVCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120 Query: 121 QKSKDEN 127 + E Sbjct: 121 VTKQQEE 127 >gi|325579099|ref|ZP_08149055.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae ATCC 33392] gi|325159334|gb|EGC71468.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae ATCC 33392] Length = 235 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + + GF + A + EA + +++D M Sbjct: 1 MSKILLVDDDIELTDLLAEVLRLTGFEIEVANNGQEALDKLNASHQ--LVLLDVMMPVLN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ+ +++ V L + + G GA+ +L KPFN L ++ + Sbjct: 59 GIETLKKIRQI---SNIPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAIL 115 Query: 119 QMQKSKDENQFLDAI 133 + S + + D I Sbjct: 116 RRVGSSELDSQSDQI 130 >gi|317478303|ref|ZP_07937467.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316905462|gb|EFV27252.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1342 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + ++V A + EA + E N +V D M + F Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILD-ENFVNLIVSDVVMPLMDGF 1154 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + L + + + + G GA++++ KPF+ E L A+ L + Sbjct: 1155 ELCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLIKN 1214 Query: 121 QKSKDE 126 +++ + Sbjct: 1215 RETLRQ 1220 >gi|284046821|ref|YP_003397161.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951042|gb|ADB53786.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 235 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ VR++ R L G V EA + EA K P+ +V+D +M + Sbjct: 3 MAEVLVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLL-KSATPDLIVLDVTMPELD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R L +V V L + G ++GA+ ++ KPF R+ L + L + Sbjct: 62 GWQTLERIRDLT-EVPVLMLTARAGELDKVRGLKSGADDYVTKPFGRQELLARVEALLRR 120 >gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1] gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1] gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family [Bacteroides xylanisolvens XB1A] Length = 225 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + +FG V + + E + L++D M Sbjct: 2 MAKILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEP-FDLLILDIIMPKIN 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE RQ V L E ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 61 GLELCRLYRQTFGYQS-PVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 119 Query: 119 QMQK 122 + K Sbjct: 120 RRNK 123 >gi|255691123|ref|ZP_05414798.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623476|gb|EEX46347.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1523 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R R +F + V EA E K +P+ ++ D M +E Sbjct: 1240 LLVEDNQELRVFLRSIFAS-NYRVVEAADGMEGWSKALK-YVPDIIISDVMMPEKDGIEM 1297 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1298 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLSQRK 1357 Query: 122 KSKD 125 K + Sbjct: 1358 KLQS 1361 >gi|160891619|ref|ZP_02072622.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492] gi|156859026|gb|EDO52457.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492] Length = 1342 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + ++V A + EA + E N +V D M + F Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILD-ENFVNLIVSDVVMPLMDGF 1154 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + L + + + + G GA++++ KPF+ E L A+ L + Sbjct: 1155 ELCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLIKN 1214 Query: 121 QKSKDE 126 +++ + Sbjct: 1215 RETLRQ 1220 >gi|152974334|ref|YP_001373851.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023086|gb|ABS20856.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + ++ + G+ +A S EA E ++ + +++D M + Sbjct: 1 MIKILLIDDEERMLQLLDLFLSPRGYFCMKAKSGFEALELV-QQKEFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L MI G GA+ ++ KPF+ + L + + Sbjct: 60 GWETCKQIRQL---SNVPIIMLTARNQNYDMIKGLTIGADDYITKPFDEQVLVARIEAVL 116 Query: 119 QMQKSK 124 + K + Sbjct: 117 RRTKKE 122 >gi|110639416|ref|YP_679625.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110282097|gb|ABG60283.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 228 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + ++ + G+ V A + +A E K+ LP +++D M Sbjct: 1 MKANSRILIVDDEQDIIELLEYNLTKEGYDVRTANNGLKAIEEA-KDFLPQLILMDIMMP 59 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R++P + ++ +L + IA AGA+ F+ KP L + Sbjct: 60 KMDGVESCRKIREIPKLKESYIIFLTARSEEFSEIAAFEAGADDFITKPIKPRALISRVS 119 Query: 116 ELPQM 120 + Sbjct: 120 AFFRR 124 >gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB [Asticcacaulis biprosthecum C19] gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB [Asticcacaulis biprosthecum C19] Length = 229 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +++ + + + + G+ A EA KE P+ LV D M +E Sbjct: 5 IIIAEDEDALSTLLHYNLEKEGYETAMAADGDEAL-MMIKERQPDLLVCDWMMPKVSGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R ++ + L + I G GA+ +++KPF+ +R + + Sbjct: 64 VCRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLRRI 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|300864661|ref|ZP_07109518.1| response regulator receiver protein [Oscillatoria sp. PCC 6506] gi|300337322|emb|CBN54666.1| response regulator receiver protein [Oscillatoria sp. PCC 6506] Length = 121 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++++VD S +R++ L G V A+ EA E + P+ +V+D M + Sbjct: 1 MSTVMVVDDSVTLREMIADLLKGRGLNVTVASDGVEALEQIKANC-PDLVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P ++ V + + G + GA++++ KPF+ + L +++L Sbjct: 60 GYEVCRRLKSDPKTQNLPVVMCSSKSEEFDRYWGMKQGADAYIAKPFHPQELVGTIKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 229 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ V A + EA +++D M + Sbjct: 1 MK-ILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTNPDIGLMILDIMMPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A VR++ + + V L + D I G GA+ ++ KPFN + ++ L + Sbjct: 60 GL-AVVREVRKDSQIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QK 122 + Sbjct: 119 SQ 120 >gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T] gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 257 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ + GF V + + +V+D + G Sbjct: 8 RILVVDDDARLRELLSRYLQEQGFSVKAVGDAPM-MDRALHREHYDLIVLDLMLPGEDGL 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V L + D I G GA+ ++ KPFN L ++ + + Q Sbjct: 67 SICRRLRAAENQIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRRQ 125 >gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6] gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 244 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +R + R GF V A A + +V+D + G Sbjct: 11 RIVVVDDDARIRDLLRRYLTQEGFEVLLAEDSK-ALNRILTRETVDLIVLDLMLPGEDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L +VD I G GA+ +L KPFN L + + + + Sbjct: 70 SICRRLRAANDITPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRRR 128 >gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 223 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|156743120|ref|YP_001433249.1| adenylate/guanylate cyclase with GAF and PAS/PAC sensors [Roseiflexus castenholzii DSM 13941] gi|156234448|gb|ABU59231.1| adenylate/guanylate cyclase with GAF and PAS/PAC sensors [Roseiflexus castenholzii DSM 13941] Length = 971 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L VD VR++ + L + G+ V A++ EA + E + P+ +++D S+ G+ Sbjct: 7 ILAVDDDASVRRMLQILLTNAGYRVSVASTGEEALAYLEL-VTPDLVLMDVSLPGLSGQH 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V+ P + V + D E +A AGA+ FL+KP + L +R + ++Q Sbjct: 66 VMERVKSDPDRPFIPVILITGYGDPEAKVAALDAGADDFLVKPVDLTELLARVRAMLRLQ 125 Query: 122 KSKDENQ 128 +S+ + Sbjct: 126 RSQRSLR 132 >gi|39936195|ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palustris CGA009] gi|192291911|ref|YP_001992516.1| response regulator PleD [Rhodopseudomonas palustris TIE-1] gi|39650050|emb|CAE28573.1| putative diguanylate cyclase (GGDEF) with response regulator receiver domain [Rhodopseudomonas palustris CGA009] gi|192285660|gb|ACF02041.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 457 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A++ +A E C++ + +++D M + F Sbjct: 4 RILVVDDIPANVKLLEDRLSAEYFDVITASNGIQALEICQRAEC-DIVLLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKSNPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 4/112 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + L + V T+ EA +V + L Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAADGNYDLLIVSLGLENFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112 + R + V + + E + + G G N +LL+P ++ L Sbjct: 216 LCSQARSLERTRHVPILAI-AEAENNARLLRGLEIGVNDYLLRPVDKNELMA 266 >gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 245 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ +R R D G V EA S E + +++D + + F Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGA-DVVLVDLMLPDIDGF 78 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +DV + + D ++AG AGA+ ++ KPF + L +R L + Sbjct: 79 ECCRRLR---RSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRR 135 Query: 121 QKS 123 +S Sbjct: 136 SRS 138 >gi|329956909|ref|ZP_08297477.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328523666|gb|EGF50758.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 1352 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R+ R + V ++ A + KE P+ ++ D M + Sbjct: 1091 QKILVVEDNDELREYLRRTL-AENYHVQVCSNGKSAL-YIVKEYFPDLIISDIMMPEMRG 1148 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E V+ + + + L + +I G + GA+ +++KPFN LR + L Sbjct: 1149 DELCQIVKNDIDTSHIPIILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLA 1208 Query: 120 MQKSKD 125 + Sbjct: 1209 NRALLR 1214 >gi|224538289|ref|ZP_03678828.1| hypothetical protein BACCELL_03180 [Bacteroides cellulosilyticus DSM 14838] gi|224520074|gb|EEF89179.1| hypothetical protein BACCELL_03180 [Bacteroides cellulosilyticus DSM 14838] Length = 1438 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R + + + VFEAT+ E E + +P++++ D M + Sbjct: 1176 SVLVVEDNTELRNFLNDILSGT-YKVFEATNGQEGLEQAL-QYVPDFIISDVMMPVMDGL 1233 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + + L + + I+G G + ++ KPF+ L+ ++ L Sbjct: 1234 DMVKAIKAHRDVCHIPIILLSAKSSLDDRISGLEQGIDDYITKPFSSTYLKTRIKSLLHQ 1293 Query: 121 QKSKDEN 127 +K E Sbjct: 1294 RKQLQEL 1300 >gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 226 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+++ + ++ G A E K P+ +++D + G+ Sbjct: 1 MHTILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAARKNP-PDLILLDLMLPGMA 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + V L + + + G GA+ +++KPF+ L ++ L Sbjct: 60 GTEICKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 231 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + +R++ + GF V A A L P+ +++D + E Sbjct: 6 ILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQART-LRPDLIILDLMLPALDGFE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +D ++ L +V+ + G GA+ +L+KPF+ L +R + + Sbjct: 65 VCRQLR---TFSDAYILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRRP 121 Query: 122 KS 123 + Sbjct: 122 RQ 123 >gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 239 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRSLLERYLSEQGFHVRSVANGEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRHVNNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ + +L G+ V A +A + + +++D + G Sbjct: 1 MTRILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGA-DLVLLDLMLPGAS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRAKSK---VPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVM 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99] gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99] Length = 228 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + +A EA + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLE-EKEFDLIILDIMMPNMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 >gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 221 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +RK+ + G+ V EA E E + + +++D M + Sbjct: 1 MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTY-DIVILDIMMPKID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L D + G + +++KPFN + L ++ L Sbjct: 60 GWSVCRKIREE---SQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 227 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + + G+ + EA++ EA E + +++D M + Sbjct: 4 NILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMI-NENDFDLVILDVMMPILDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + +L + + I G GA+ ++ KPF L ++ + K Sbjct: 63 SACIKIRENY-TMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQLRRYK 121 >gi|150004693|ref|YP_001299437.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|160892059|ref|ZP_02073062.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492] gi|149933117|gb|ABR39815.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|156858537|gb|EDO51968.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492] Length = 1356 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + +R+ + D + + +A E K PN +V D M + Sbjct: 1096 LLVVEDNRDIREYIANELQDT-YRILQADDGKEGLALALK-YTPNIIVSDIMMPNMNGIA 1153 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L + + G +GA+S+L KPF+ + LR + L ++Q Sbjct: 1154 LCKAIKSDMNTSHIPVILLTAKDSIQDKEEGYNSGADSYLTKPFSAKLLRSRINNLLEIQ 1213 Query: 122 KSKDE 126 K + Sbjct: 1214 KRLAK 1218 >gi|144897363|emb|CAM74227.1| two-component transcriptional regulator, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 243 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD H +R + G V A E + +V+D M G Sbjct: 7 ILVVDDDHEIRDLLARFLAKHGLHVSTARDGAE-MTKLLDAHGIDLVVLDLMMPGEDGLS 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G + + L + I G GA+ +L KPFN L ++ + + + Sbjct: 66 LTRRLRAQGCTLPIIMLTAMAEDTDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRAPA 125 Query: 124 K 124 + Sbjct: 126 E 126 >gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 230 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + G+ V + +A + E + +++D + + F Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSEN-FDMVLLDVMLPKIDGFS 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 VR+ +DV + + + D + G GA+ ++ KPF L +R + Sbjct: 65 VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRT 121 Query: 121 -QKSKDENQFLDA 132 Q S + + L A Sbjct: 122 AQSSTQDGKVLKA 134 >gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] Length = 234 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + + E P+ +++D + Sbjct: 3 KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VRQ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 118 Query: 120 MQKSKDENQ 128 ++ +++ Sbjct: 119 RREITQKSK 127 >gi|322417618|ref|YP_004196841.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124005|gb|ADW11565.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 455 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+VD + I ++ + + V S A + LP+ +++D M G+ Sbjct: 12 MPSILIVDDNQINLQLLCGMLAGMSWRVRPVASGIMALKAAMA-KLPDLILLDAMMPGMD 70 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F H++Q P + + + D E + R GA+ FL KP +R L+ + L Sbjct: 71 GFEVCRHLKQTPATEHIPIVMITALTDQESRMKALRCGADDFLSKPVDRSELQVRTKNLL 130 Query: 119 QMQKSKDENQ 128 +++K D + Sbjct: 131 RVKKYGDLLR 140 >gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] Length = 252 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 3/110 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A E +EL+P+ ++ D M Sbjct: 27 RLLLVDDEPGLRTAVQAYLEDEGFDVTTANDGEEGWTAA-QELIPDLVISDVMMPRLDGY 85 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + +R V +L + I G +AG + ++ KPF+ + L Sbjct: 86 GLLKRLRGDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDEL 135 >gi|301057951|ref|ZP_07199008.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] gi|300447918|gb|EFK11626.1| putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein [delta proteobacterium NaphS2] Length = 453 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + + +D GF V A S EA + E E +P+ +++D M G+ Sbjct: 3 KTILVVDDETSILQSLEGILSDEGFEVATAESGLEALKKVE-ETMPDLVLLDIWMSGMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L + V + + E + + GA ++ KP + E L ++ Sbjct: 62 IETLEKIKDLYPRLQVIMMSGHGNIETAVKATKVGAYDYIEKPLSLEKLLLSINNALAHS 121 Query: 122 KSKDENQFLDA 132 + +E FL Sbjct: 122 RLTEEVHFLKE 132 >gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K + Sbjct: 116 RRVKKTE 122 >gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] Length = 227 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + +V F V++AT+ A E + P+ +V+D + Sbjct: 1 MK-ILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFES-INPDLVVLDLMLPDTD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ +++ + L + D E ++ G + GA+ +++KPF+ + L ++ + + Sbjct: 59 GLTVC-RKIRESSNIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRR 117 Query: 121 QK 122 + Sbjct: 118 SE 119 >gi|254294350|ref|YP_003060373.1| response regulator receiver modulated diguanylate cyclase [Hirschia baltica ATCC 49814] gi|254042881|gb|ACT59676.1| response regulator receiver modulated diguanylate cyclase [Hirschia baltica ATCC 49814] Length = 459 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD RK+ F V A +A + P+ +++D M + F Sbjct: 4 RVLVVDDIEANRKLLCAKLAHEYFQVTTAVDGLDAIDKAIA-TEPDIILLDVMMPRMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + + + E + G RAGA+ FL KP N L +R L + Sbjct: 63 EACRELKFDPRTEHIPIVMVTALNEREDRLKGLRAGADDFLTKPINDLQLLSRVRALSKY 122 Query: 121 QKSKDENQFLDA 132 + DE + +A Sbjct: 123 KLVADELRKREA 134 Score = 77.2 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE---AREFCEKELLPNYLVIDESMEGV 59 +L+VD + + + L + Sbjct: 155 RVLVVDDNERQAARICRYLET-DHKPMTLANAGAKPGGVGAGAATVDIMVLSLGGEKYDG 213 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ A++R + D+ + ++ D + GA+ L++P + E L ++ Sbjct: 214 LKLCAYLRNLEATRDLPILAIVGAEDEALAVRALDLGASDILVRPIDPEELLARVKTQVS 273 Query: 120 MQKSKDENQ-FLD 131 ++ D + LD Sbjct: 274 KKRYIDSLRARLD 286 >gi|253570109|ref|ZP_04847518.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840490|gb|EES68572.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1511 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R R +F + V EA+ E K LP+ ++ D M +E Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASDGMEGWSKALK-YLPDIIISDVMMPEKDGIEM 1293 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1294 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1353 Query: 122 KSKD 125 K ++ Sbjct: 1354 KLQN 1357 >gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 242 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF +F A + E K + P+ ++ D M Sbjct: 16 RILLVDDEPGLRAAVKTFLEDEGFEIFIAVDGEDGWEKA-KTIFPDLIISDVMMPRANGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G AG + ++ KPF+ + L ++ + Sbjct: 75 ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 Query: 121 Q-KSKDENQFLDAI 133 Q + E I Sbjct: 135 QERLLKEAARFADI 148 >gi|163802258|ref|ZP_02196153.1| osmolarity response regulator [Vibrio sp. AND4] gi|159174063|gb|EDP58873.1| osmolarity response regulator [Vibrio sp. AND4] Length = 146 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNTLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11] Length = 219 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + + V + + + +++D + Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYY-DLIILDLMLPSIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + D +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPQKD 123 >gi|254788255|ref|YP_003075684.1| transcriptional regulator [Teredinibacter turnerae T7901] gi|237687195|gb|ACR14459.1| two component transcriptional regulator, winged helix family [Teredinibacter turnerae T7901] Length = 231 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLVD + + GF V +A S A +V+D M G+ Sbjct: 7 ILLVDDDQELCDLIGEYLTAEGFAVDKAHSGQSALTRLASPPECQLIVLDIMMPGLSGLD 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R P + V L D I G GA+ +L KP N L +R + + ++ Sbjct: 67 VLQRLRPSNS-TPVIMLTGRGDDIDRILGLEMGADDYLAKPCNPRELVARVRAILRRTQN 125 >gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 9/139 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+ D + ++ G+ V +AT A E + + + +V+D M Sbjct: 1 MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQ-AIDLVVLDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ ++ + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118 Query: 119 QM-----QKSKDENQFLDA 132 + Q +E L+A Sbjct: 119 RRFLALNQPKVEETSVLEA 137 >gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM 15897] gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM 15897] Length = 234 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 3/124 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLLV+ +R+ + + V EA + E E K + ++D M + Sbjct: 1 MKHTLLLVEDELGIRETVKIFLKSQNYEVIEAENGKEGLEAL-KHNDIHLAIVDIMMPVM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + +D+ V +L + + I G GA+ ++ KPF L + + Sbjct: 60 DGLTMTMKLREV-SDIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNLR 118 Query: 120 MQKS 123 + Sbjct: 119 RYEQ 122 >gi|189463212|ref|ZP_03011997.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136] gi|189430191|gb|EDU99175.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136] Length = 1425 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R H+ + V EA + E E +P+ +V D M + Sbjct: 1156 TILVVEDNDELRHFIVHILQKE-YRVLEAPNGRIGLEKVLAE-MPDVVVSDVMMPEMDGI 1213 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-LPQ 119 + V+ + V L + + I G GA+ ++ KPF+ LR ++ L Q Sbjct: 1214 ELLNAVKTNHNVCHIPVIILSAKASLDDRIKGLEYGADGYITKPFSSAYLRARLKSVLLQ 1273 Query: 120 MQKSKD 125 KD Sbjct: 1274 RTHLKD 1279 >gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 247 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ GF V + + A E +E +V+D + + F Sbjct: 6 RILVVEDEPSIADTLQYSLESEGFAVQISGTGASALEILGQEE-FALVVLDIGLPDMTGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQ+ +V V +L + G G + +L KPF+ L +R + + + Sbjct: 65 EVC-RQVRTSKNVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRRTQ 123 Query: 123 SKD 125 + Sbjct: 124 PQA 126 >gi|170077561|ref|YP_001734199.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002] gi|169885230|gb|ACA98943.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002] Length = 584 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+++ IVRK+ R + + V EA + + P+ +V D M G Sbjct: 1 MTTILVIEDDDIVRKLIRKILTQQQYAVLEAAGGHQGVQLALAH-QPDLIVCDVMMPGID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ + +L + + + G R GA+ +L KPF +E L A+ Sbjct: 60 GYGVLQKLQAEAATAMIPFVFLTARAEKQDIRQGMRLGADDYLTKPFTKEELLSAI--AI 117 Query: 119 QMQKSKDENQ 128 ++ K Q Sbjct: 118 RLSKLSSLQQ 127 >gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|75909821|ref|YP_324117.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75703546|gb|ABA23222.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 393 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD S + + + + G+ V A + A + + +++D M G+ Sbjct: 10 KILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPC-DLVLLDLMMPGMDGY 68 Query: 62 -FIAHVR-QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR +M L + + + + G GA+ F+ KP + L +R L + Sbjct: 69 EVTRRVRGEMKLQQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 127 Query: 120 MQKSKDENQFLD 131 ++ S DE + Sbjct: 128 LKHSMDERDEIA 139 >gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 233 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ VF A +A + E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQFLDA 132 S+ + DA Sbjct: 119 RHYSQPAQEVNDA 131 >gi|54307405|ref|YP_128425.1| osmolarity response regulator [Photobacterium profundum SS9] gi|46911825|emb|CAG18623.1| putative transcriptional regulator OmpR [Photobacterium profundum SS9] Length = 239 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLSRETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRNANNKLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124 Query: 123 SKD 125 + Sbjct: 125 IEA 127 >gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4] gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7] gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 241 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + +V+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLIVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G+ + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESME-- 57 M S+L+VD + + + G+ V +A EA E + +++D M Sbjct: 1 MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALLAMATNEGTVDLVILDVMMPRL 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ +R+ + + + L + + I G GA+ +++KPFN L ++ L Sbjct: 61 NGIDTCRRIRE---TSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117 Query: 118 PQM 120 + Sbjct: 118 LRR 120 >gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 237 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + ++ GF V ATS A K+ P+ +V+D + + F Sbjct: 13 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAA-KDHRPDLVVLDVMLPDLDGF 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 GT V +L + I G G + ++ KPF+ E L +R + + Sbjct: 72 EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 131 Query: 123 SKDE 126 + ++ Sbjct: 132 TGEQ 135 >gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] Length = 234 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + V + +A + ++ + +++++D + + Sbjct: 4 TILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRV-DFVIMDLMLPQLDGV 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + + + L + I G GA+ +L KPF+ + L ++ + + Sbjct: 63 EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRR 120 >gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 4 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GFQVCKTIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 119 QMQKSKDE 126 + + DE Sbjct: 121 RRIEVHDE 128 >gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 227 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ A +E PN +V+D + + Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRF-RETNPNLVVMDLMLPVMDGLE 67 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L + E + G AGA+ +L+KPF+ E L +R + Sbjct: 68 VA-RRIRKTSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123 >gi|94264235|ref|ZP_01288030.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94266209|ref|ZP_01289918.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453216|gb|EAT03674.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455346|gb|EAT05550.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 403 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + R + G+ V +A ++ + + +++D M + Sbjct: 7 RILVVDDEEVNRDILVRRLIRRGYQVEAVADGQQALDWLAGQPC-DLVLLDVMMPVLDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ T + V D E ++ AGA+ ++ KP + L+ M ++ Sbjct: 66 SALRRLRRDFSPTALPVIMTTARDDSEDVVTALEAGASDYVTKPIDFPVLQARMDTQLRL 125 Query: 121 QKSKDEN 127 +++ +E Sbjct: 126 KRTTEEL 132 >gi|313901404|ref|ZP_07834874.1| response regulator receiver protein [Thermaerobacter subterraneus DSM 13965] gi|313468332|gb|EFR63776.1| response regulator receiver protein [Thermaerobacter subterraneus DSM 13965] Length = 144 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + K R GF V AT +A E + +++D + V Sbjct: 4 RILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGG-IDLIILDLMLPEVDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ + V + L + I G GA+ +++KPFN L +R + + K Sbjct: 63 TVC-REVRKTSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVLRRVK 121 >gi|291532478|emb|CBL05591.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 194 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ H + + + GF ++ A E +E + +++D + + Sbjct: 1 MSKILIVEDEHRIARFLQMELEHEGFSTASESNGLRAYERIIQEDY-DLVLLDIMLPDMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +VR++ +D+ + L + + + G GA+ ++ KPF + L +R Sbjct: 60 GLTICQNVRKL---SDIPIIMLTAKDEINDKVTGLDIGADDYITKPFAIQELLARIRATL 116 Query: 119 QMQKS 123 + + Sbjct: 117 RKHNN 121 >gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7] gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7] Length = 241 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD +R++ + ++VFEA + +A + + + +++D + + Sbjct: 7 NLLVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDY-DLILLDLMLPKMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + D + L + + I G GA+ +++KPF+ + + + + + Sbjct: 66 EVAGKIREA-KDTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQ 124 Query: 123 SKDENQ 128 S + Sbjct: 125 SSKPKE 130 >gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 227 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ ++V AT+ E + KE + +++D M + Sbjct: 4 QRILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKF-KESKYDMIILDIKMPNLDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +++ + +L D I G G + ++ KPF+ L + + + Sbjct: 63 HTTCKMIRN---TSNIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLR 119 Query: 120 MQKSKDENQFLD 131 ++++N L+ Sbjct: 120 RSHNENKNTSLN 131 >gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 223 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ +R + R GF +FEA+ E KE + +++D M + Sbjct: 1 MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEK-IDLIILDIMMPKM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ ++V V +L + + E + G GA+ ++ KPF+ + L ++ L + Sbjct: 60 NGL-EMLEKLREVSNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLK 118 Query: 120 MQK 122 + Sbjct: 119 RTR 121 >gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820] gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K + Sbjct: 116 RRVKKTE 122 >gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 224 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ + GF EA EA + + +V+D M + Sbjct: 1 MPTILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPV-DLVVLDIMMPIMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ + L + + + G G + +L KPF+ L +R L Sbjct: 60 GWTLCKELRR--ANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALL 117 Query: 119 QMQK 122 + K Sbjct: 118 KRYK 121 >gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12] gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12] Length = 241 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] Length = 230 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + ++ + + G+ V+ A++ E +K P+ +++D M + Sbjct: 7 KILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKK-KQPHLIILDVMMPEMDGI 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + V +L + +AG AGA+ ++ KP + L ++ L + Sbjct: 66 EACEKIRATPGLENTIVAFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125 >gi|114563674|ref|YP_751187.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB 400] gi|114334967|gb|ABI72349.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB 400] Length = 331 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +V + + D + + A S EA E++ LP+ +++D M G+ Sbjct: 9 MPTILIVDDEPANLRVLKKMLEDQ-YRLIFAKSGEEALRLIERD-LPDLILLDVMMPGMT 66 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ + V V ++ D G GA ++ KP + ++ +R Sbjct: 67 GFEVCQQLKTVQRTKAVPVIFITALSDEVDEAKGFDVGAVDYITKPVSPAVVKARVRTHL 126 Query: 119 QMQKSKDENQ-FLDAI 133 + +++D + L I Sbjct: 127 SLVQAEDLRRTRLQVI 142 >gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 237 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F EA + PN +++D + G+ Sbjct: 5 QRILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPV-FEPNLVLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCRELRAS---SQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 MQK 122 + Sbjct: 121 RYQ 123 >gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 255 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G V A A +E P+ +V+D + + Sbjct: 28 RVLVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAV-RAAREFRPDVVVLDVMLPDMDGL 86 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 87 AVLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSG 146 Query: 123 SKDENQ 128 + + Sbjct: 147 AAQAAR 152 >gi|326202207|ref|ZP_08192077.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988002|gb|EGD48828.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + +R+ R L + V EA + E + L + +++D M G+ Sbjct: 5 RILIIEDDYDIREGIRILLESENYEVIEAENGMTGLEKL--DTLMDLVILDIMMPGMSGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V +L + + G AG + +L KPF L ++ L + Sbjct: 63 RTCEEIRKVSF---LPVLFLTAKAQESDKLIGLMAGGDDYLTKPFTYAELLGRVKALVRR 119 Query: 121 QKSKD 125 + Sbjct: 120 YREYQ 124 >gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 230 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+S+L+VD + ++ + G+ ++A + EA E +KE + +++D M + Sbjct: 1 MNSILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKE-QIDIVILDIMMPDLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + +L + + I G GA+ +L KPFN L ++ L Sbjct: 60 GKEVLRKIREKSS---TPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|297582644|ref|YP_003698424.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141101|gb|ADH97858.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 228 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + + +G V + + A E + + +++D M + Sbjct: 1 MATILIVDDETRMLDLVALYVAPYGHRVLKESDGEAAVNRVADEPV-DLVILDVMMPKMN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +DV + L E ++ G R GA+ ++ KPF+ L + L Sbjct: 60 GWEVCQDIRS---FSDVPIIMLTARDGKEDVVKGLRYGADDYVTKPFDEGELMARVDALL 116 Query: 119 QMQKSKDE 126 + K +DE Sbjct: 117 RRTKRQDE 124 >gi|83310215|ref|YP_420479.1| Serine phosphatase RsbU regulator sigma subunit [Magnetospirillum magneticum AMB-1] gi|82945056|dbj|BAE49920.1| Serine phosphatase RsbU regulator sigma subunit [Magnetospirillum magneticum AMB-1] Length = 537 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+ D S R V + G V A E + + +++D M G+ Sbjct: 160 RVLVADDSKANRDVLVRYLSREGHQVVAVADGLAAVEAVFGQ-AFDLVLLDMIMPGMNGD 218 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + ++ + V + + ++ AGA +L KPFNR LR + + Sbjct: 219 EVLKAIKADSRLRSLPVIMISALDGLDSIVRCIEAGAEDYLPKPFNRVLLRARIGACLEK 278 Query: 121 QKSKD-ENQFLDAI 133 ++ ++ E +L A+ Sbjct: 279 KRLREVELSYLQAL 292 >gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 230 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + +V R GF A+ A ++ P+ +V+D + L Sbjct: 4 RILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAI-AAQRRDAPDLVVLDIGLPEKDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +DV + +L + I G GA+ +L KPF+ L ++ + + Sbjct: 63 EVCRDIRKS---SDVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAILKR 119 >gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 268 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++VD VR+V G+ V A EA KE P+ +V+D + + F Sbjct: 24 TVMVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKE-QPDLVVLDVMLPKLDGF 82 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 83 AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 139 >gi|253571534|ref|ZP_04848940.1| two-component system sensor histidine kinase/response [Bacteroides sp. 1_1_6] gi|251838742|gb|EES66827.1| two-component system sensor histidine kinase/response [Bacteroides sp. 1_1_6] Length = 1353 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R+ + D F EA + EA E + + + +V D M + Sbjct: 1104 TILIVEDNNEIRRYLNNGLADL-FNTLEAGNGEEALEKLKDNEV-DVIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 +V+Q + V L + D + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221 Query: 120 MQKSKDE 126 ++ D+ Sbjct: 1222 RRRMLDK 1228 >gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436] gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436] Length = 227 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 7/131 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V S A E P+ +++D + G+ Sbjct: 4 KVLVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAA-TQPDLVLLDVMLPGMDGI 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 + +RQ +DV + L D ++AG AGA+ ++ KPF + L ++ + Sbjct: 63 EICSLIRQK---SDVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARLRG 119 Query: 120 MQKSKDENQFL 130 +++ +E+ L Sbjct: 120 REETTEEHVRL 130 >gi|190891316|ref|YP_001977858.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696595|gb|ACE90680.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|327194838|gb|EGE61672.1| two-component response regulator protein [Rhizobium etli CNPAF512] Length = 457 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A EA CE+ + +++D M G+ F Sbjct: 4 RILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERN-QVDLILLDIMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KTLSDELRIRA 133 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 43/127 (33%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61 +LLVD ++ V + A E + ++++ + + Sbjct: 158 VLLVDGRANSQERIVRALKPV-ADVLALSDPQAALFEA-AEHAFDLVIVNANFDDYDPLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + + + E ++ G N ++++P + L + + Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIVRPVDPNELVARSLTQIRRK 275 Query: 122 KSKDENQ 128 + D + Sbjct: 276 RYNDRLR 282 >gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 265 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R++ GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKG-QALALQYNPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + L + ++G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122 >gi|293370383|ref|ZP_06616937.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292634531|gb|EFF53066.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1470 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F+ + V EA E K LP+ ++ D M +E Sbjct: 1197 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALK-YLPDIIISDVMMPEKDGIEM 1254 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1255 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1314 Query: 122 KSKD 125 K + Sbjct: 1315 KLQS 1318 >gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] Length = 237 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A + EA + N +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDFMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 IDGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550] Length = 224 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 119 QMQKSKD 125 + K + Sbjct: 117 RRVKKTE 123 >gi|170738018|ref|YP_001779278.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820206|gb|ACA94788.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 312 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + G++V A S +A + + + P+ +++D M + F Sbjct: 2 ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 60 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + V ++ + E ++ G R G ++ KP E L + + Sbjct: 61 TCVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120 Query: 122 KSK 124 +++ Sbjct: 121 RAQ 123 >gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC 43184] gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC 43184] Length = 225 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + +FG V A E ++E L++D M + Sbjct: 1 MAKILLVEDEINIASFIERGLQEFGHEVRVANDGQAGWELVQQED-FQLLILDIIMPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 RQ V L + ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 60 GLQLCKQYRQTYGYQS-PVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQELEARIKALL 118 Query: 119 QMQKSK 124 + ++ Sbjct: 119 RRTGAE 124 >gi|302036150|ref|YP_003796472.1| transcriptional regulatory protein pilR [Candidatus Nitrospira defluvii] gi|300604214|emb|CBK40546.1| Transcriptional regulatory protein pilR [Candidatus Nitrospira defluvii] Length = 459 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+VD +R V + G++V A+ EA +KE + + ++ D M G Sbjct: 1 MEKILVVDDEQGLRDVLSIMLKRAGYVVTVASDGDEAIAQVQKE-IFDLVITDLKMPRVG 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + V+ D V + + + + GA +L KPF + ++ +R Sbjct: 60 GLEVLKAVKA--ASPDTVVLMITAFASADSAVEAMKHGAYDYLTKPFQVDEVQLIIRNAI 117 Query: 119 QMQKSKDENQFLD 131 + ++ EN L Sbjct: 118 ERRRLSTENMLLK 130 >gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B str. Eklund 17B] Length = 223 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ +R + R GF +FEA+ E KE + +++D M + Sbjct: 1 MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEK-IDLIILDIMMPKM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ ++V V +L + + E + G + GA+ ++ KPF+ + L ++ L + Sbjct: 60 NGL-EMLEKLREVSNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLK 118 Query: 120 MQK 122 + Sbjct: 119 RTR 121 >gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC 7002] gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus sp. PCC 7002] Length = 227 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD +R + G V A + + E + + L++D + Sbjct: 2 RILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEY-DLLILDWMLPQYSGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R LG + +L + + ++G AGA+ +L+KPF L +R L + Sbjct: 61 EICQRVRSLGRTTPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987] gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465] gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W] gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187] gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820] gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26] gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342] gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248] gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str. CNEVA-9066] gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055] gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str. Western North America USA6153] gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger B] gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str. Vollum] gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str. Australia 94] gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1] gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987] gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465] gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W] gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187] gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820] gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342] gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26] gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248] gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1] gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 250 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 18 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 77 EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 133 >gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L+LVD + + G+ V A + +A E E+E +P ++ D M + Sbjct: 11 RRLMLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEE-VPELIICDIMMPEMDG 69 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ + V +L + E + G GA+ +++KPF+ E L + + Sbjct: 70 YTLVKLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLR 129 Query: 120 MQK 122 + Sbjct: 130 QTE 132 >gi|237714241|ref|ZP_04544722.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229445733|gb|EEO51524.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1523 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F + V EA E K LP+ ++ D M +E Sbjct: 1237 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1294 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1295 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLLMQRK 1354 Query: 122 KSKD 125 K + Sbjct: 1355 KLQS 1358 >gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] Length = 223 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ +R + R GF +FEA+ E KE + +++D M + Sbjct: 1 MKKSVLIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEK-IDLIILDIMMPKM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ ++V V +L + E + G GA+ ++ KPF+ + L ++ L + Sbjct: 60 NGL-EMLEKLREVSNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLK 118 Query: 120 MQK 122 + Sbjct: 119 RTR 121 >gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345] gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 241 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|86357267|ref|YP_469159.1| response regulator PleD [Rhizobium etli CFN 42] gi|86281369|gb|ABC90432.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 457 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A EA CE+ + +++D M G+ F Sbjct: 4 RILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERN-QVDLILLDIMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KTLSDELRIRA 133 Score = 73.3 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 43/127 (33%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61 +LLVD ++ V + A E + ++++ + + Sbjct: 158 VLLVDGRANSQERIVKALKSV-ADVVALSDPQAALFEA-AENTFDLVIVNANFDDYDPLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + + + + ++ G N +L++P + L + + Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADDMVVRALDLGVNDYLIRPVDPNELVARSLTQIRRK 275 Query: 122 KSKDENQ 128 + D + Sbjct: 276 RYNDRLR 282 >gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 224 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 119 QMQKSKD 125 + K + Sbjct: 117 RRVKKTE 123 >gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 234 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ + G+ V +A KE P+ +V+D + G + Sbjct: 4 RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRL-KERTPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKD 125 + Sbjct: 123 AAPER 127 >gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ AT EA +++D M + Sbjct: 1 MK-ILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTNPDIALMILDVMMPNMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + + L + I G GA+ ++ KPFN + +R L + Sbjct: 60 GL-EVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 ++ ++Q Sbjct: 119 AENAVQDQ 126 >gi|229083816|ref|ZP_04216127.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699473|gb|EEL52147.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA E +++ + +++D M + Sbjct: 1 MIKILLVDDEERMLRLLDLFLSPRGYFCMKATSGIEALELIQQKN-FDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ +V + L M+ G GA+ ++ KPF+ + L + + Sbjct: 60 GWDTCYQIRQL---CNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLIARIEAVL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|218256845|ref|ZP_03474359.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii DSM 18315] gi|218225919|gb|EEC98569.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii DSM 18315] Length = 255 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 7/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ V A S EA + L++D M + Sbjct: 30 MPKILVVDDEEDLCEILKFNLEIEGYEVDTAFSAEEALKMDIASYQ--LLLLDVMMGEIS 87 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + +R+ D+ + +L + M+ G GA+ ++ KPF+ + ++ + Sbjct: 88 GFKMASILRKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVL 147 Query: 119 QM---QKSKDENQFLD 131 + ++ EN+ L Sbjct: 148 RRTSDKEKVQENECLK 163 >gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1197 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +R + G+ V+ A + E + ++ P +V D M + Sbjct: 833 RILVVDDNSDLRAYVGSILKQSGYQVWTARNGEEGWQM-TQKCHPQLIVTDLMMPVMSGL 891 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + L + D I G GA+++L KPFN L +R L + Sbjct: 892 DMIHTIRGSQDFKGIPIILLTAKADEASRIEGTEKGADAYLSKPFNDRELLAEVRNLLAL 951 Query: 121 QKSKDE 126 ++ + Sbjct: 952 KEQEQR 957 Score = 77.5 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Query: 31 ATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMI 90 A + A E E E ++ D+ M + D+ L D E ++ Sbjct: 3 ADNGPAALEILEAEGDVAVIISDQRMPLMSGTEFLSITAAQYPDIIRIILTGYTDVEDLV 62 Query: 91 AGARAG-ANSFLLKPFNRETLRFAMRELP 118 AG ++ KP+N E L+ +R+ Sbjct: 63 EAINAGKVFKYVTKPWNAEELKSVVRQAM 91 >gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 245 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 5 KRILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + ++ ++A Sbjct: 124 DALAKDSKIEA 134 >gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] Length = 240 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +V + L + + I G GA+ ++ KPF+ + ++ + + + Sbjct: 66 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 123 SKDE 126 K E Sbjct: 126 GKAE 129 >gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 240 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + ++ GF A A+ + +LP+ +++D + G L Sbjct: 7 VLIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDA-VLPDVILLDWMLPGESGLA 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R P + + L D +AG AGA+ ++ KPF+ + L MR + + + Sbjct: 66 LAKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRAVLRRR 125 Query: 122 KSKD 125 + Sbjct: 126 APEQ 129 >gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 240 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+++ + + D G++ A + +E P+ +V+D + Sbjct: 3 QKILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREH-PDLVVLDIMLPAIDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R + + L + I G GA+ +LLKPF+ L +R + + Sbjct: 62 FEVCRRIRA---WSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILR 118 Query: 120 MQKSKDE 126 S E Sbjct: 119 RIPSSQE 125 >gi|298250725|ref|ZP_06974529.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297548729|gb|EFH82596.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R R F V A+ EA ++ + +++D + + Sbjct: 5 KYILVVDDEPGIRNFIRRNLELRAFKVLLASDGLEALAHFDQANVV-LVILDIMLPNMDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + V + L + IA GA+ +L KPF+ L ++ + + Sbjct: 64 LEVCRRIRQK---STVPIVMLTALGEDADKIAALDQGADDYLTKPFSVGELMARVKAVLR 120 Query: 120 MQK 122 Sbjct: 121 RSH 123 >gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 232 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 4 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 119 QMQKSKDE 126 + + DE Sbjct: 121 RRIEVHDE 128 >gi|148241662|ref|YP_001226819.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849972|emb|CAK27466.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 240 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LLLVD + + R G+ V A E P+ +++D ++ L Sbjct: 9 RLLLVDDEPKLTEFLRMELEVEGYAVQIANDGASGLIALRGEPAPDLVLLDWNLPDFTGL 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G V V L + + + AG + +L+KPF+ E L +R L + Sbjct: 69 DICRRIR--STGMSVPVLMLTGYDEVKDKVEALDAGVDDYLVKPFSIEELLARLRALQRR 126 Query: 121 QKSKDEN 127 + Sbjct: 127 SNALQPQ 133 >gi|300725194|ref|YP_003714522.1| response regulator in two-component regulatory system with EnvZ [Xenorhabdus nematophila ATCC 19061] gi|297631739|emb|CBJ92458.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 239 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V A + + + +++D + G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQ-MDRLLTRESIQLIILDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + + I G GA+ +L KPFN L MR + + Q Sbjct: 65 SVCRRLRSQNNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRAVLRRQ 123 >gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 236 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + ++ GF V + EA E E P+ +++D + G + Sbjct: 4 KILIVEDEEALALLLQYNLEAEGFSVSISQRGDEA-EVAIGEEPPDLIILDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + L + I G GA+ +++KPF+ L ++ + + Sbjct: 63 ELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILRR 122 Query: 121 QKSKDENQFLD 131 + +Q L+ Sbjct: 123 AAPERISQTLE 133 >gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 230 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 7/139 (5%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +LLV+ ++++ GF +A V A + LP+ +++D + G Sbjct: 1 MTTANILLVEDEPAIQELLAFNVAQCGFRAIQAYDVPSALVEINRA-LPDLILLDWMLPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R D+ + L +D I G +GA+ ++ KPF+ L +R Sbjct: 60 TSGVELARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIRA 119 Query: 117 LPQMQ--KSKDENQFLDAI 133 + + + + DE ++ + Sbjct: 120 VLRRRAPQMSDETVRVEGV 138 >gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] Length = 230 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 57/129 (44%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + + + H + G+ + A + E + P+ +++D + + Sbjct: 1 MKTILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYF-TNYKPDVILLDVMLPDID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R++ V + + + + + G GA+ ++LKPF+ + + +R + Sbjct: 60 GFEVCQCIRKVSR---VPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVL 116 Query: 119 QMQKSKDEN 127 + + E Sbjct: 117 RRTEDNPEQ 125 >gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides Rock3-17] gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides Rock3-17] Length = 247 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 15 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDY-DLILLDIMMPGKDGI 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + L + + + G G++ +++KPF+ + ++ + + Sbjct: 74 EVCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 130 >gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 231 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + +V + GF V T+ +KE P+ +++D + G+ Sbjct: 3 KKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEK-PDLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ +L KPF+ L ++ + + Sbjct: 62 EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|237719712|ref|ZP_04550193.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229450981|gb|EEO56772.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1379 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + + ++ L + + VF+A + E E E + +V D M + Sbjct: 1127 SILVVEDNEELLQLMVKLLSRE-YNVFKAENGKEGVTILENED-IDLIVSDVMMPEMDGI 1184 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +V+ + + V L + E GA++F+ KPFN L +R L + Sbjct: 1185 EFCKYVKGNLEISHIPVILLTAKNKEEDRAEAYEVGADAFIAKPFNLAVLHARIRNLLKY 1244 Query: 121 QKSKDEN 127 ++ + Sbjct: 1245 KERMAHD 1251 >gi|167950458|ref|ZP_02537532.1| Response regulator receiver [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 283 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L++D V+K+ G A ++E P+ +++D M G Sbjct: 6 NVLIIDDDRFVQKLISKTLAASGLSTRTADDGESGIAIAQQE-QPDLILLDVEMPGINGY 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +P D+ V +L + + G GA+ +L+KPF E L + L + Sbjct: 65 EVCDRLRSLPETQDIPVVFLSSHGTLRERLQGYEVGADDYLVKPFEAEHLLARINVLMRY 124 Query: 121 QKSKDEN 127 + E Sbjct: 125 GAERKEL 131 >gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 53/130 (40%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + +V+ +R++ + GF + E + P +++D + G Sbjct: 2 IFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGIS 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 + +R+ D+ + + + + G +GA+ ++ KPF L ++ + + Sbjct: 62 ILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRRS 121 Query: 121 QKSKDENQFL 130 +++ +++ + Sbjct: 122 SRNEKKDEII 131 >gi|119509005|ref|ZP_01628156.1| Response regulator receiver domain protein (CheY) [Nodularia spumigena CCY9414] gi|119466171|gb|EAW47057.1| Response regulator receiver domain protein (CheY) [Nodularia spumigena CCY9414] Length = 121 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+V+ S R++ L G +V A EA E + P+ +V+D M + Sbjct: 1 MSTVLIVEDSIAQREMITDLLKASGLIVTHAHDGVEALEAIQTAP-PDLVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRLKSNPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 226 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R GF V A++ A E P +V+D + + Sbjct: 1 MTRVLVVDDEPQILRALRINLTARGFDVTTASTGAGAL-RAAAERQPEVVVLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + T+V V L D + + AGA+ ++ KPF + L +R + Sbjct: 60 GF-EVLAGLRGWTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRR 118 >gi|109898617|ref|YP_661872.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700898|gb|ABG40818.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 244 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 5/127 (3%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + + + GF V S A E + + +V+D M Sbjct: 1 MKNEKYKILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMM 60 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 G+ +R + V + L D I G GA+ +L KP N L ++ Sbjct: 61 PGMSGL-DVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKA 119 Query: 117 LPQMQKS 123 + + ++ Sbjct: 120 IIRRTEN 126 >gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c] gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 240 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + G+ V A + + E+E + +V+D + G Sbjct: 6 TKILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLEREN-FHLMVLDLMLPGEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++ + L + D I G GA+ +L KPFN L ++ + + Sbjct: 65 LSICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLR 122 Query: 120 MQ 121 + Sbjct: 123 RK 124 >gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 231 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + +V + GF V T+ +KE P+ +++D + G+ Sbjct: 3 KKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEK-PDLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ +L KPF+ L ++ + + Sbjct: 62 EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 235 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 57/130 (43%), Gaps = 2/130 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R++ + G+ + A+ EA E +KE + +++D M + Sbjct: 8 KTILVVDDEKDIREIIEIYLINEGYNIVLASDGIEALEKLKKEK-IDLIILDIMMPKLDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + L + + I G GA+ +++KPFN L ++ + Sbjct: 67 IRTCIKIRED-KKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRRV 125 Query: 122 KSKDENQFLD 131 S E + ++ Sbjct: 126 TSFSEAKEIN 135 >gi|224537041|ref|ZP_03677580.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM 14838] gi|224521349|gb|EEF90454.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM 14838] Length = 1439 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+V+ + +R ++ + V EA + E K +P+ ++ D M + Sbjct: 1175 SVLVVEDNEELRHFMVNILRK-DYHVIEAENGKTGLEKI-KLKIPDLVISDIMMPCLDGI 1232 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + V++ + + L + + I G GA+ ++ KPF+ LR + L + Sbjct: 1233 ELLEEVKKDYNVSHIPFVLLSAKATLDDRIKGLEYGADDYITKPFSSGYLRARISSLLKQ 1292 Query: 121 QKSKDE 126 + E Sbjct: 1293 RSILRE 1298 >gi|158421790|ref|YP_001523082.1| response regulator [Azorhizobium caulinodans ORS 571] gi|158328679|dbj|BAF86164.1| response regulator [Azorhizobium caulinodans ORS 571] Length = 245 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ +R + G+ A A + + P+ +++D + G Sbjct: 8 TTLLIVEDDREIRSLLADFLGREGYDTRLAADGR-AMDAILAGIRPDLVILDIMLPGEDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R DV V L + D I G GA+ +L+KPFN L +R + + Sbjct: 67 LSLCRRLRAQG---DVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILR 123 Query: 120 MQKSKDE 126 ++ Sbjct: 124 RVQAAAR 130 >gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + + GF EA EA + + + +++D M Sbjct: 4 RTVLIVDDEEEMRLLVSMYLENAGFCCLEAGDGDEALTVLARRSV-DAILLDVMMPNQDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F A +R+ +DV + +L + + G + G + +++KPF+ L + + + Sbjct: 63 FSVCARIREQ---SDVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|332885682|gb|EGK05928.1| hypothetical protein HMPREF9456_02192 [Dysgonomonas mossii DSM 22836] Length = 377 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + L + GF V A A E K+ +P+ +++D +M + F Sbjct: 9 TILVVDDVMTNVLLLQVLLDKEGFNVVTANDGQAAIEIIRKD-VPDLILLDINMPNMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 I V++ L ++ V +L D + ++ G R G + ++ KPFN+E L + Sbjct: 68 EVIREVKKYSLYREIPVIFLTAMNDVDSIVKGFRLGGSDYITKPFNKEELMARI 121 >gi|311695852|gb|ADP98725.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 246 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +R++ G+ V A + RE + + +V+D + G F Sbjct: 15 SVLVVDDDAAIRELLEEHLTRVGYDVRTAGDGDQMRERLNSSHV-DLIVLDVMLPGDDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ + V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 74 TLC-RQIREYSRVPIIMLTASSDETDRVVGLELGADDYLAKPFSARELQARVKALLRR 130 >gi|309792204|ref|ZP_07686676.1| diguanylate cyclase [Oscillochloris trichoides DG6] gi|308225745|gb|EFO79501.1| diguanylate cyclase [Oscillochloris trichoides DG6] Length = 647 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + + R D G+ V A++ E + + P+ L++D M + F Sbjct: 30 RILIADDDPALCLLLRETLQDVGYEVRIASNGDELVRMAQDQP-PDLLLVDLMMPLMDGF 88 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + L ++ G +GA+ +++KP++ + L +R + Sbjct: 89 EAIRQLRNDTRTAHLPMIILTARSTSSDVVTGFDSGADDYIIKPYDVDVLLARIRSHLRR 148 Score = 38.2 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 7/98 (7%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 LL++ +R G+ AT+V +A+ + PN L+ + S V Sbjct: 351 LLIEPDESLRATIATTVRLQGYRPMVATNVVDAQGLLARHPHPNILIANISDPTVWSLWN 410 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102 +R L + E + R GAN+ ++ Sbjct: 411 TLRNTSHF-----IAL--VPNEEAVENAHRQGANAVII 441 >gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8] gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8] Length = 224 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R++ G+ F A EA + EK + ++ D M + Sbjct: 1 MFQILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTN-IDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + + + FE G AGA+ +++KP + + + L + Sbjct: 60 GYELTRQLRNADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKR 119 Query: 121 QKSKDE 126 K E Sbjct: 120 SKLASE 125 >gi|262408382|ref|ZP_06084929.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262353934|gb|EEZ03027.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1524 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F + V EA E K LP+ ++ D M +E Sbjct: 1238 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1295 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLLMQRK 1355 Query: 122 KSKD 125 K + Sbjct: 1356 KLQS 1359 >gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA + E E + +++D M + Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLE-EKKFDLIILDVMMPNMDGI 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 68 EVCMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 >gi|301164100|emb|CBW23656.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1330 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ + +R H +D + + ++ EA KE +P ++ D M + Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A ++ + + + L D + ++ G + GA+ +++KPFN L+ + L Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLT 1186 Query: 120 MQKSKD 125 + Sbjct: 1187 NRALLK 1192 >gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis RH4] gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis RH4] Length = 256 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--- 59 +L+V+ + ++ + F V +A A E P+ +++D M Sbjct: 30 KILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEK-PDLILLDWMMPHGESG 88 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++F +++ P D+ + L + + + + G AG + ++ KPF+ L ++ + + Sbjct: 89 IDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLR 148 Query: 120 MQKSKDENQFLDA 132 + + A Sbjct: 149 RTGIDMGKELMQA 161 >gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 231 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + + + GF + EA K + V+D + G+ Sbjct: 6 NRILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPY-DLFVLDIMLPGMDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R T V V +L + G G + +L KPF L +R L + Sbjct: 65 YELCRRLRSK---TTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|253565107|ref|ZP_04842563.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] gi|251946572|gb|EES86949.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] Length = 1330 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ + +R H +D + + ++ EA KE +P ++ D M + Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A ++ + + + L D + ++ G + GA+ +++KPFN L+ + L Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLT 1186 Query: 120 MQKSKD 125 + Sbjct: 1187 NRALLK 1192 >gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD ++ K + V A EA E + + +++D + Sbjct: 8 MKKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDY-DIVLLDIMIPVYT 66 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E VR+ ++V + L + + I G GA+ ++ KPFN ++ M+ + Sbjct: 67 GIEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIL 123 Query: 119 QMQKSKD 125 + K Sbjct: 124 RRSGKKQ 130 >gi|53714602|ref|YP_100594.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|60682624|ref|YP_212768.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|52217467|dbj|BAD50060.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|60494058|emb|CAH08850.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1330 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ + +R H +D + + ++ EA KE +P ++ D M + Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A ++ + + + L D + ++ G + GA+ +++KPFN L+ + L Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLT 1186 Query: 120 MQKSKD 125 + Sbjct: 1187 NRALLK 1192 >gi|260171767|ref|ZP_05758179.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315920080|ref|ZP_07916320.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693955|gb|EFS30790.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1511 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F+ + V EA E K LP+ ++ D M +E Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGASKALK-YLPDIIISDVMMPEKDGIEM 1295 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355 Query: 122 KSKD 125 K + Sbjct: 1356 KLQS 1359 >gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] Length = 223 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R V A EA ++ K + +++D + + Sbjct: 4 KKILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYA-KNCEYDLVLLDVMLPKMDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D+ + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 63 FQVCQAIRE---FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 119 Query: 120 MQKSKDE 126 K+E Sbjct: 120 RTARKEE 126 >gi|153855865|ref|ZP_01996840.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814] gi|149751833|gb|EDM61764.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814] Length = 239 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 9/140 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R+ G+ VF+A E E EKE + ++D M + Sbjct: 7 MNHVLVVEDDKEIREGVEIYLKSQGYEVFQAADGVEGLEVIEKED-IHLAIVDIMMPRMD 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ D V +L + + I G GA+ ++ KPF L + + Sbjct: 66 GISMVVKLREKY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRR 124 Query: 121 QKS-------KDENQFLDAI 133 + K+EN + I Sbjct: 125 YRRFMERLGDKEENSRIHTI 144 >gi|119898775|ref|YP_933988.1| putative response regulator [Azoarcus sp. BH72] gi|119671188|emb|CAL95101.1| putative response regulator [Azoarcus sp. BH72] Length = 384 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+VD + V + + V S A E P+ +++D M + Sbjct: 15 RTLLVVDDTPQNLAVLGEVLKSH-YQVRAVNSGERALRAAHTEPRPDLILLDVMMPEMDG 73 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + H+R+ P V ++ + + G GA ++ KPFN + +R + Sbjct: 74 YEVLRHLREDPATRATPVIFITAMTGSDDEMRGLELGAVDYITKPFNPSIVLARVRTQLE 133 Query: 120 MQKSKD----ENQFLDA 132 +++++D EN++L+A Sbjct: 134 LKEARDRLARENEWLEA 150 >gi|49081910|gb|AAT50355.1| PA4381 [synthetic construct] Length = 228 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + + + G+ V A E + +V+D + G+ Sbjct: 2 RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDVMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +L+KPF L + + + Sbjct: 61 ALCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRR 119 Query: 121 QKSKDENQFLDA 132 + + A Sbjct: 120 AQGGGRRELSVA 131 >gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus UQM 2246] Length = 236 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + FN G+ V + E + LP+ +++D ++ G+ Sbjct: 5 RILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTA-LPDVVLLDLNLPGMNGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R D+ + + + D + G GA+ ++ KPFN + L ++ L + Sbjct: 64 DVCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRR 123 Query: 121 QKSKDE 126 + + E Sbjct: 124 AQGQSE 129 >gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 273 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A + +A + P+ +++D + + Sbjct: 42 RVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAV-RAARSFRPDAVILDIMLPDIDGL 100 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R TDV V +L + E +AG AG + ++ KPF+ E + +R L + Sbjct: 101 EVLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSG 160 Query: 123 SKDENQ 128 Q Sbjct: 161 LVAAKQ 166 >gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 224 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ GF EA EA + + +V+D M + Sbjct: 1 MTTILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPV-DLVVLDIMMPTMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ ++ + L + + + G G + +L KPF+ L ++ L Sbjct: 60 GWTLCKELRR--ANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALL 117 Query: 119 QMQK 122 + + Sbjct: 118 KRYR 121 >gi|153807471|ref|ZP_01960139.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185] gi|149129833|gb|EDM21045.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185] Length = 1516 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F + V EA E K LP+ ++ D M +E Sbjct: 1239 LLVEDNQELREFLRSIFTPV-YRVVEAADGMEGWSKALK-YLPDIIISDVMMPEKDGIEM 1296 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1297 TRELRADMMTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLIQRK 1356 Query: 122 KSKD 125 K + Sbjct: 1357 KLQS 1360 >gi|71905649|ref|YP_283236.1| response regulator receiver modulated metal dependent phosphohydrolase [Dechloromonas aromatica RCB] gi|71845270|gb|AAZ44766.1| response regulator receiver modulated metal dependent phosphohydrolase [Dechloromonas aromatica RCB] Length = 379 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD S + + D + + ATS +A + + P+ +++D M G Sbjct: 8 QSILVVDDSPENIDLLSEVLRDE-YRIRVATSGEKALKIVYSDEPPDLILLDIMMPGLSG 66 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++ P + V ++ + G GA ++ KP + ++ +R Sbjct: 67 LEICRRLKANPDRRRIPVIFVTAMSSMDDEKRGLETGAVDYITKPISPPIVKARVRTHLA 126 Query: 120 MQKSKDENQFL 130 + E + + Sbjct: 127 LYDQSRELEHM 137 >gi|148262094|ref|YP_001228800.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395594|gb|ABQ24227.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 508 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + D G+ A EA +E +++D M + Sbjct: 5 KILIVDDEPDIALILKLQLEDAGYKTATARDGVEALAAIAREK-FALVLLDIKMPRMDGM 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +DV V + + + + GA ++ KPF+ E + ++ Q+ Sbjct: 64 QVLERVQSHYSDVAVVMMTAHGSEDIAVEAMKNGAFDYIAKPFSSEDVLQKVKRAIQLNT 123 Query: 123 SKDENQFLD 131 ++ EN L Sbjct: 124 ARQENIRLQ 132 >gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ ++ G++ +EA EA + KE P+ +++D + + F Sbjct: 4 RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIA-KEQNPDLIILDVMLPKLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +R + + + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 -SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRIS 121 Query: 123 S 123 Sbjct: 122 L 122 >gi|260642486|ref|ZP_05416052.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260621843|gb|EEX44714.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1459 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 59/128 (46%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ ++ +R ++ ++ + V EA + E ++ ++ +P+ ++ D M + Sbjct: 1196 TSILIVEDNNELRHFLWNILSET-YTVLEAANGKEGLKYA-QQYIPDLIISDVMMPIMDG 1253 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + + L + + IAG G + ++ KPF+ L+ + L + Sbjct: 1254 LDMVKAIKADHNTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTKILSLLR 1313 Query: 120 MQKSKDEN 127 +K + Sbjct: 1314 QRKQLQDL 1321 >gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + +V + G+ + A+ E P+ +++D + + Sbjct: 7 KVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFV-EYKPDIVLLDIMLPQEDGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R+ + V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRKAD---NTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRR 122 Query: 121 QKSKD 125 S++ Sbjct: 123 ANSEN 127 >gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 227 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + + GF V +A +A E ++E P+ LV+D + L Sbjct: 2 KVLVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRE-RPSLLVLDLMLPHLSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ P + + L + + + G G + +L KPF + L ++ L + Sbjct: 61 DVCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRR 120 Query: 121 QKSKDENQFLDA 132 + + + A Sbjct: 121 SEEVQGGEIVKA 132 >gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] Length = 233 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + ++ G+ S +A ++ P+ +++D + + Sbjct: 7 SILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQR-FRPDVVLLDWMLPDLSGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + V L + E +AG GA+ ++ KPF+ + L + L + Sbjct: 66 RLLTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR 125 Query: 121 QKSKDENQFLDA 132 + L A Sbjct: 126 KVPDRAKSLLRA 137 >gi|153870115|ref|ZP_01999582.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] gi|152073419|gb|EDN70418.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] Length = 396 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD I ++ + + + AT+ +A + E + +++D M + F Sbjct: 252 VLIVDDDPINLQILENQLRVENYAITRATTGHDALKALESGIPFAIILLDIMMPKMSGFE 311 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + + L + ++ G +AGAN +L KPF++ L ++ Q+ Sbjct: 312 VCQIIRQTYPANQLPIIMLTAKNQVSDLVQGMQAGANDYLTKPFSKGELITRIKTHIQLS 371 Query: 122 K 122 + Sbjct: 372 R 372 >gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 233 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R G+ V A S +A E P+ +V+D + G+ Sbjct: 5 KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSG-RPDLVVLDLMLPGIDGL 63 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + L + + +I G GA+ ++ KPF+ + L +R + + Sbjct: 64 EVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRR 123 Query: 121 QKSKD 125 Q++K Sbjct: 124 QQAKA 128 >gi|75906871|ref|YP_321167.1| diguanylate phosphodiesterase [Anabaena variabilis ATCC 29413] gi|75700596|gb|ABA20272.1| Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation [Anabaena variabilis ATCC 29413] Length = 403 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ VR+ L F A + E P+ ++ D M Sbjct: 1 MIKILVIEDEESVRENILDLLQAEDFHTVSAANGRIGINLALAE-FPDLILCDMMMPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +RQ PL + +L + G GA+ +L KPF R L A+ Sbjct: 60 GYGVLSALRQEPLTATIPFIFLTAKSAKADFRQGMDMGADDYLTKPFTRAELLSAVMNRL 119 Query: 119 QMQKSKDE 126 + Q + + Sbjct: 120 ERQATLKK 127 >gi|169634809|ref|YP_001708545.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii SDF] gi|169153601|emb|CAP02784.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii] Length = 236 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60 +L+VD +R++ + GF +A +A + + P +++D + G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ ++ V L + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DLCRRLKRDENLAEIPVLMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 121 QKSKDENQFLDA 132 + + +DA Sbjct: 125 ANALSGEKTIDA 136 >gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 219 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+V+ + + + G+ A EA + E+E + +++D + Sbjct: 1 MNRILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEG-FDLILLDIMLPEID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++R + + V +L + + E + G +AGA+ +L KPF L + + Sbjct: 60 GYELMDYIRPLE----IPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVL 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 230 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + G+ V + +A + E + +++D + + F Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSEN-FDMVLLDVMLPKLDGFS 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 VR+ +DV + + + D + G GA+ ++ KPF L +R + Sbjct: 65 VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRT 121 Query: 121 -QKSKDENQFLDA 132 Q + + + L A Sbjct: 122 AQSASQDGKVLKA 134 >gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 226 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + GF V +A + +A + KE +V+D M + Sbjct: 3 KTILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIF-KENTVELVVLDIMMPVMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R++ + V V L + + E I G G ++++ KPF+ + L ++ L + Sbjct: 62 WTTCKEIRKI---SQVPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALLK 118 Query: 120 MQKSKDENQ 128 + NQ Sbjct: 119 RAYPDENNQ 127 >gi|239833775|ref|ZP_04682103.1| two component response regulator [Ochrobactrum intermedium LMG 3301] gi|239821838|gb|EEQ93407.1| two component response regulator [Ochrobactrum intermedium LMG 3301] Length = 314 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +R + G V A E + + + + +++D + G +E Sbjct: 83 VLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAV-DLIILDVMLPGKSGIE 141 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V + L D I G GA+ +L KPF+ L +R + + Sbjct: 142 ICQDIRRHSR---VPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRL 198 Query: 122 KSKD 125 ++ Sbjct: 199 ENNR 202 >gi|257413909|ref|ZP_04744629.2| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] gi|257201844|gb|EEV00129.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] Length = 234 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD +R + R G+ + EA EA E C KE + +++D M + Sbjct: 11 MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKED-FDLIILDVMMPELD 69 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ V L + I G G + +++KPF+ L ++ + Sbjct: 70 GFSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVI 126 Query: 119 QMQKSKD 125 KD Sbjct: 127 SRNNKKD 133 >gi|87125186|ref|ZP_01081032.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] gi|86166955|gb|EAQ68216.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] Length = 175 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R++ GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDRDMRELVGGHLEHNGFDVQRAEDGIKG-QALALQYSPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L + ++G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122 >gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 231 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++V+ +R++ R G+ V +A +A EKE P+ +++D M G+ Sbjct: 5 TIMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEK-PDLILLDVEMPGMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R T + + ++ + I G AG + ++ KPF+ L +R + + Sbjct: 64 EVCRRIRLK---TTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRR 120 >gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603] gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603] gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121] Length = 219 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+V+ + + + V + + +++D + Sbjct: 1 MTNILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKAL-NKTYDLIILDLMLPNIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + D +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLEICRQIRQQ---QTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPKKD 123 >gi|115375443|ref|ZP_01462704.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115367570|gb|EAU66544.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 965 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D + +R R L D +V A + P+ ++ D M Sbjct: 609 RVLVADDNSDMRGYIRSLL-DPTCVVETVQDGEAAYQAILDSP-PDLVLSDVMMPRLDGF 666 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR+ P V + L E I G +AGAN +L+KPF+ L + ++ Sbjct: 667 GLLQKVRENPKTQGVPLILLSARAGEEARIEGLQAGANDYLVKPFSARELLARIENAVRL 726 Query: 121 QKSKDENQFLD 131 + + E + L Sbjct: 727 ARERSERERLA 737 >gi|260172902|ref|ZP_05759314.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] gi|315921185|ref|ZP_07917425.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695060|gb|EFS31895.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1360 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++V+ + +R + F + V + A E+ ++ + ++ D M G Sbjct: 1104 RIMIVEDNDDLRFYLKKTFASI-YTVIDKPDGESALEYL-QDKSVDLIISDVMMPGIQGD 1161 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L + + + ++ G +GA+ +L KPF+ E L+ ++ + Q Sbjct: 1162 ELCRRIKSDFTTSHIPVILLTAKTEKDAILEGLESGADDYLTKPFDTEILKTKIKGVLQN 1221 Query: 121 QKSKDE 126 +K + Sbjct: 1222 RKIMRQ 1227 >gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME-- 57 M S+L+VD + + + G+ V +A EA + + + +++D M Sbjct: 1 MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ +R+ + + L + + I G GA+ +++KPFN L ++ L Sbjct: 61 NGIDTCRRIRENSS---IPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117 Query: 118 PQM 120 + Sbjct: 118 LRR 120 >gi|157144822|ref|YP_001452141.1| acetoacetate metabolism regulatory protein AtoC [Citrobacter koseri ATCC BAA-895] gi|157082027|gb|ABV11705.1| hypothetical protein CKO_00549 [Citrobacter koseri ATCC BAA-895] Length = 461 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD VR++ F+ G A++ A + + P+ +++D M Sbjct: 1 MKTRYRILIVDDEDNVRRMLATAFSLQGHETQCASNGQTALQHF-ADAPPDVVLMDIRMP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + A V + + + E + R+GA +++KPF+ + L ++ Sbjct: 60 EMNGIEALKVMRAQHPRVPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRA 119 Query: 118 PQMQKSKDENQFL 130 Q+Q K E + L Sbjct: 120 LQLQAMKQEIRSL 132 >gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] Length = 231 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 10/135 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ L+VD ++ K + G+ V A EA + KE + +++D + + Sbjct: 1 MNKALVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMA-KEKEYDIVLLDVMLPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +++ + L + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GMEVCQAIRE---FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAII 116 Query: 119 QM----QKSKDENQF 129 + K+ ++N+ Sbjct: 117 RRNSKKAKAVEKNER 131 >gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 233 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + ++ G++V + +A ++ + +++D + Sbjct: 2 RILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIF-DVDYDLIILDIMLPVKDGL 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR G + L E + G AGA+ +L+KPF+ L +R + + Sbjct: 61 KVCREVR--ENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRR 118 >gi|118593260|ref|ZP_01550645.1| two-component response regulator [Stappia aggregata IAM 12614] gi|118434151|gb|EAV40807.1| two-component response regulator [Stappia aggregata IAM 12614] Length = 240 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 9/137 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R V ++ A EA + P+ +V+D + + Sbjct: 4 QTILVVDDDPHIRDVICFALQKASYVFEVAADGKEALDKALL-CNPSLIVLDIGLPEMDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 H+R ++V + +L D I G GA+ ++ KPF+ L + + + Sbjct: 63 LDVCRHLR---RTSEVPILFLSARDDEIDRIVGLELGADDYVTKPFSPRELIARVGAILK 119 Query: 120 MQK---SKDENQFLDAI 133 + ++ L A+ Sbjct: 120 RYGGLTAAQTDEDLPAL 136 >gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205] Length = 234 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R+ GF V AT+ A + +++ +V+D + G+ Sbjct: 12 RLLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDP-FELIVLDVMLPGINGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + L V + + G GA+ +L+KPF L R L + + Sbjct: 71 DLCRKLIELPQRPLVLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRRHQ 130 Query: 123 SKDEN 127 + D+ Sbjct: 131 ASDQQ 135 >gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 238 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ R + + EA A + E + +++D M G + Sbjct: 6 KILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMAL-EKDYSCILLDIMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + V L + + + G GA+ +++KPF+ + ++ L + Sbjct: 65 EVCQEL---HEKKMTPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRR 121 >gi|311745310|ref|ZP_07719095.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] gi|126577843|gb|EAZ82063.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] Length = 230 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + G+ E +K+ + ++D M F Sbjct: 5 KLLVVEDDPNLGDILQEYLEMKGYEPTLCRDGEEGWNKFKKDKY-DLCLLDIMMPKKDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++ + +L + + +I G + GA+ ++ KPF+ E L + + + + Sbjct: 64 TLAKEIKKVQDNLPILFLTAKNQKDDIIEGLKIGADDYITKPFSMEELLLRVTAILRRTQ 123 Query: 123 SKDE 126 E Sbjct: 124 KSSE 127 >gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 223 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R + R F GF V EA+ EA E + + ++D M + Sbjct: 3 KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIF-SENIVDLAILDIMMPKLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++R++ ++ + L + E + G GA+ ++ KPF+ + L + L + Sbjct: 62 LAVCRNIREV---SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLR 118 Query: 120 MQKSKDENQFLD 131 + ++ LD Sbjct: 119 RTGTLNDKNILD 130 >gi|94264861|ref|ZP_01288636.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454682|gb|EAT04947.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 391 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD ++ + D G VF AT EA C P+ +++D M + Sbjct: 11 RVLVVDDQPPNIQLLAEVLAD-GHQVFIATGGAEALAICRAPQPPDLVLLDVVMPEMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V ++ E+ + G AGA ++ KP++ +R +R + Sbjct: 70 EVCRRLKADEATSAIPVIFVTARDSAEEEVVGFAAGAVDYISKPYSPAIVRARVRTQLE- 128 Query: 121 QKSKDENQFLD 131 + +N+ L Sbjct: 129 --LQSKNRILA 137 >gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614] gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614] Length = 224 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + G+ V A EA E P+ +++D + + Sbjct: 1 MSRVLVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHP-PDVVILDLGLPDLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V + L D + AGA+ ++ KPF + L +R + + Sbjct: 60 GV-DVIAGLRGWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRR 118 Query: 121 QKSKD 125 ++ D Sbjct: 119 NQAVD 123 >gi|294808197|ref|ZP_06766963.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294444606|gb|EFG13307.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1483 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F + V EA E K LP+ ++ D M +E Sbjct: 1197 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1254 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1255 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLLMQRK 1314 Query: 122 KSKD 125 K + Sbjct: 1315 KLQS 1318 >gi|83310939|ref|YP_421203.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945780|dbj|BAE50644.1| Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Magnetospirillum magneticum AMB-1] Length = 393 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + V L D + V A+S +A + E P+ +++D M G Sbjct: 12 TILVVDDTPDNLAVLSSLLKDE-YRVKVASSGEKALKVAMAETSPDLILLDIMMPGLDGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + V +L + + + G GA ++ KP + + ++ ++ Sbjct: 71 EVCRRLKAEPRTHHIPVIFLTAKAEVDAEKTGLDLGAVDYITKPISPPIVLARVKTHLKL 130 Query: 121 QK----SKDENQFLD 131 + +D+N FL+ Sbjct: 131 KATADFLRDKNDFLE 145 >gi|17231163|ref|NP_487711.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132804|dbj|BAB75370.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 407 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD S + + + + G+ V A + A + + +++D M G+ Sbjct: 24 KILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPC-DLVLLDLMMPGMDGY 82 Query: 62 -FIAHVRQMPLGTD-VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR + + + + G GA+ F+ KP + L +R L + Sbjct: 83 EVTRRVRGEMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 141 Query: 120 MQKSKDENQFLD 131 ++ S DE + Sbjct: 142 LKHSMDERDEIA 153 >gi|17228725|ref|NP_485273.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130577|dbj|BAB73187.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 403 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ VR+ L F A + E P+ ++ D M Sbjct: 1 MIKILVIEDEESVRENILDLLQAEDFHTVSAANGRIGINLALAE-FPDLILCDMMMPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +RQ PL + +L + G GA+ +L KPF R L A+ Sbjct: 60 GYGVLSALRQEPLTATIPFIFLTAKSAKADFRQGMDMGADDYLTKPFTRAELLSAVMNRL 119 Query: 119 QMQKSKDE 126 + Q + + Sbjct: 120 ERQATLKK 127 >gi|300725849|ref|ZP_07059315.1| putative two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] gi|299776896|gb|EFI73440.1| putative two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] Length = 1355 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + ++ + + + + + A + +A +KE L + ++ D M + Sbjct: 1104 TILIVEDNLELLQLMQKILGNL-YHIITAKNGSQAWNIIQKESL-DLVISDIMMPIMDGL 1161 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L + E G AGA+ F+ KPF+ E L+ + L Sbjct: 1162 ELTRLIKTNHDYQLIPVVLLTAKTTTEDKNKGLEAGADDFMNKPFSMEELKMRIANLLDN 1221 Query: 121 QKSKDEN 127 +K+ Sbjct: 1222 RKNIQRL 1228 >gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 233 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ VF A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 + ++ + Sbjct: 119 RRYTQPAQE 127 >gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1159 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD I + RHL G+ + ++ +A +E + + +++D M + Sbjct: 752 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPV-DLILLDVMMPTLSGFD 810 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + V L + + G AGAN +L+KPF +E L +R L + Sbjct: 811 VCRRLRQQHPKEKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVRALLEAS 870 Query: 122 KSKD---ENQFLD 131 + EN+ L Sbjct: 871 AGRASLVENRLLK 883 >gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 228 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ + + + G+ V A +E P+ V+D + G+ Sbjct: 5 ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLA-RESTPDLAVLDWMLPGLSGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G + V L + +AG AGA+ +++KPF+ E L +R + + Sbjct: 64 ICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQE 123 Query: 124 KDEN 127 DE+ Sbjct: 124 TDED 127 >gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 233 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 6/126 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L+V+ H + + H G+ A EA + + +++D + Sbjct: 1 MKARILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEW-DVILLDVMLPHR 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 LE +RQ V L D + G GA+ ++ KPF+ L ++ + Sbjct: 60 DGLEICRQLRQEKNY--TPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVI 117 Query: 118 PQMQKS 123 + + Sbjct: 118 LRRRNL 123 >gi|288959193|ref|YP_003449534.1| two-component response regulator, modulated serine phosphatase [Azospirillum sp. B510] gi|288911501|dbj|BAI72990.1| two-component response regulator, modulated serine phosphatase [Azospirillum sp. B510] Length = 416 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + R + L G + +A +A E+ P+ +++D M + Sbjct: 36 RVLIVDDNRMNRNLLTALLERGGITLIDQAEDGQDALTRMER-CKPDLILLDLMMPRMDG 94 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F H+R P + V E AGA ++ KP + L +R + Sbjct: 95 FEMCRHLRADPRWKSLPVLVQSSLDRPEDRARAFIAGATDYITKPVSAVELLARVRIQLR 154 Query: 120 MQKSKDENQF 129 + + + Sbjct: 155 KRAMLRDLER 164 >gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 225 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +RK+ G+ V EA EA + + +++D M + Sbjct: 4 MK-VLVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENKDIALIILDVMMPRMD 62 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + L + + + G GA+ ++ KPF+ + L + + Sbjct: 63 GWEVCRQIRKDSK---VPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAII 119 Query: 119 QMQKSKDEN 127 + D N Sbjct: 120 RRAYGVDSN 128 >gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. RCC307] gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. RCC307] Length = 241 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 7/124 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE---KELLPNYLVIDESMEG 58 LL+V+ +R+ + GF V S A E + + +++D + G Sbjct: 12 TRLLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPG 71 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 L+ ++R+ G + + + G GA+ +L+KPF L R Sbjct: 72 VSGLDVCRYMRRR--GFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRA 129 Query: 117 LPQM 120 L + Sbjct: 130 LLRR 133 >gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435] gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435] Length = 233 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V+ A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 S+ + Sbjct: 119 RHYSQPAQE 127 >gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 231 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V + GF V T+ + +KE PN +++D + G+ Sbjct: 3 KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PNLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ +L KPF+ L ++ + + Sbjct: 62 EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|255020263|ref|ZP_05292332.1| Two-component system response regulator OmpR [Acidithiobacillus caldus ATCC 51756] gi|254970405|gb|EET27898.1| Two-component system response regulator OmpR [Acidithiobacillus caldus ATCC 51756] Length = 240 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61 +LLVD +R + F V S A + + + L++D M G Sbjct: 5 RILLVDDDPRLRSILLRYLEMQDFSVCGVAS--TALMDRMLEREFFDLLLLDVMMPGEDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F A R + + L D + + G GA+ +L KPF E L +R + + Sbjct: 63 FEACARLRRQEPQLPIIMLTARGDLDDRVQGLSLGADDYLAKPFEPEELVARIRAVLRRS 122 Query: 122 K 122 + Sbjct: 123 Q 123 >gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 229 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTNPDIGLIILDLMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q+ +D+ + L + I G +GA+ ++ KPFN + ++ L + Sbjct: 60 GM-QVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDEN 127 + + N Sbjct: 119 SQGEVTN 125 >gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R V GF EA + A E L+ + +++D + + Sbjct: 1 MKTVLVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLV-DLVILDLMLPDMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L ++ I G GA+ +L+KPF+ + +R + Sbjct: 60 GEQVCVSIRK---TNSIPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAIL 116 Query: 119 QMQKSKDENQFLD 131 + D++Q L Sbjct: 117 RRT---DDSQLLA 126 >gi|160886890|ref|ZP_02067893.1| hypothetical protein BACOVA_04904 [Bacteroides ovatus ATCC 8483] gi|156107301|gb|EDO09046.1| hypothetical protein BACOVA_04904 [Bacteroides ovatus ATCC 8483] Length = 1511 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F+ + V EA E K LP+ ++ D M +E Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGASKALK-YLPDIIISDVMMPEKDGIEM 1295 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355 Query: 122 KSKD 125 K + Sbjct: 1356 KLQS 1359 >gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 254 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 33 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 91 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 92 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 Query: 121 QK 122 + Sbjct: 149 YQ 150 >gi|253682308|ref|ZP_04863105.1| regulatory protein VanR [Clostridium botulinum D str. 1873] gi|253562020|gb|EES91472.1| regulatory protein VanR [Clostridium botulinum D str. 1873] Length = 232 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R+ + + G V+EA +A +E + +++D M + Sbjct: 4 NNVLVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDAL-MILQEEEIHLILMDIMMPKMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + D+ + L + + + G GA+ ++ KPFN L ++ + Sbjct: 63 IKATFKIREK-KDIPIIMLSAKSEDTDKVLGLNIGADDYVTKPFNPLELIARVKSQLRR 120 >gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 242 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + V G+ A A + P+ ++D + G+ Sbjct: 6 RILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ TD + + V+ + G GA+ ++ KPF+ + ++ + + + Sbjct: 66 -EVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRR 123 >gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium abscessus ATCC 19977] gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium abscessus] Length = 247 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V+ A S A + + P+ +++D M G+ F Sbjct: 22 KVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLART-VRPDAVILDVMMPGMDGF 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D +L + IAG GA+ ++ KPF+ E + +R + + Sbjct: 81 GVLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRRSG 140 Query: 123 SKDE 126 E Sbjct: 141 MGSE 144 >gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 225 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + G+ + +E P+ +++D + G+ Sbjct: 5 RILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTA-RESNPDLILLDWMLPGISGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G+ V + L + D +AG AGA+ +++KPFN E L +R + K Sbjct: 64 EICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNK 123 Query: 123 SK--DENQFLD 131 + D QFLD Sbjct: 124 EENPDLLQFLD 134 >gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 234 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ + G+ V +A KE +P+ +V+D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRL-KERIPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKDENQFLD 131 + L Sbjct: 123 ASPERLATVLA 133 >gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074] gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074] gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074] Length = 231 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 2/131 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + V A A E P+ +V+D + + Sbjct: 1 MTRVLVVDDEPQIVRALELNLRARQYEVDSAGDGTTAL-RLAAERHPDVIVLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + V V L ++ + AGA+ ++ KPF + L +R + Sbjct: 60 GV-DVLRGLRSWSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRR 118 Query: 121 QKSKDENQFLD 131 + ++ + Sbjct: 119 TEPAAPDEEAE 129 >gi|256376590|ref|YP_003100250.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255920893|gb|ACU36404.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 229 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + R G V A+ + E P+ +++D + + Sbjct: 1 MSTVLVVEDEPDIALALRLNLERAGHEVRVASDGKQGLREL-HESQPSLVLLDIGLPVLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ R + +DV V L + G R GA+ +L KPF+ + L + + + Sbjct: 60 GWMVLERIRDV-SDVPVLLLTAHGMEADKVRGLRGGADDYLTKPFSAKELLARIEAILRR 118 Query: 121 QK 122 + Sbjct: 119 AE 120 >gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1] gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1] Length = 234 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + E+ + +++D M + F Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 72 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 Query: 121 QK 122 + Sbjct: 129 YQ 130 >gi|119487283|ref|ZP_01621034.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] gi|119455838|gb|EAW36973.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] Length = 519 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + + G+ V A S A + P+ +++D M + F Sbjct: 15 KILVVDDLPENLRLLQDILVQQGYDVRFANSGKLALLSLSR-FQPDLILLDIMMPDLDGF 73 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ V ++ D + G + G N ++ KPF E + +R + Sbjct: 74 TVCQQLKANRETENIPVIFMSALDDGSNKVKGFQVGGNDYITKPFITEEVLARIRYQISL 133 Query: 121 QKSKDENQ 128 Q + + Q Sbjct: 134 QTLQRQLQ 141 >gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 245 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LL + +R G+ V EA + P+ L++D M G+ Sbjct: 13 QTVLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTP-PDVLLLDVMMPGIDG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R G + L V+ IAG AGA+ +++KPF+ E + +R L + Sbjct: 72 LQVCRVLRA--EGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 129 Query: 120 MQKSKD 125 + Sbjct: 130 RTGNAS 135 >gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 212 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A++ E E + P+ ++ D M + Sbjct: 5 KRLLLIDDDPNLILLAKDYLEFRGYEVVAASNGLEGLEAM-RHFTPDLIICDVMMPEMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ +R + V +L + G GA+ +++KPF E L + + Sbjct: 64 YTFVETIRSNSATDWIPVIFLSARGQTADRVRGLTTGADVYMVKPFEPEELVAQVESSLK 123 Query: 120 MQKSKDENQ 128 + + Q Sbjct: 124 HTERLLQVQ 132 >gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34] gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34] gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34] gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34] gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in Cd(II), Zn(II), Co(II) resistance [Cupriavidus metallidurans CH34] Length = 225 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + ++ GF+V A + + E E + +++D + G+ + Sbjct: 2 RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAE-ETDYDVIILDVMLPGMDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + ++ V +L D + G GA+ +L+KPF L +R Q Sbjct: 61 TV-IKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCL-RQS 118 Query: 123 SKDENQFL 130 + E++ L Sbjct: 119 TSKESERL 126 >gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202] gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202] gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60] Length = 242 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++ ++ D G+ V A E+ + L++D + GV Sbjct: 9 KRILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGW-DALILDLMLPGVDG 67 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR M + + G GA+ +L KPF+ L ++ L + Sbjct: 68 LDICRRVRAM--TRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFR 125 Query: 120 MQKSKDENQFLD 131 Q++ N L+ Sbjct: 126 RQEAMGRNLMLE 137 >gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 224 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V EA ++ E + +++D M V Sbjct: 1 MK-ILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEY-DLVILDIMMPKVN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G V L + + G GA+ +++KPF+ L +R + + Sbjct: 59 GFEVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRR 118 Query: 121 QKSKDENQFL 130 + N+ + Sbjct: 119 KYGNSSNKLM 128 >gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] Length = 240 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 7/124 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ R F G+ V AT EA + E++ P+ +++D +M + Sbjct: 20 RILIVDDEPDIVEMLRCFFERRGYFVLTATDGAEALKKAEQQ--PDMILLDVNMPELDGM 77 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + +L ++ + G AG + ++LKPF+ L + + Sbjct: 78 EVCRRIR---DFVPCPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRR 134 Query: 121 QKSK 124 + + Sbjct: 135 ETRR 138 >gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] Length = 229 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD ++ K R G V A EA +E + +++D + Sbjct: 3 KRVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEAL-KLSRENAYDMILLDVMLPKYDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ +DV V L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FQVCQQIRE---FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKD 125 +D Sbjct: 119 RTSKRD 124 >gi|307153866|ref|YP_003889250.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306984094|gb|ADN15975.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] Length = 613 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+++ I+R + + + GF V EAT+ + E P+ ++ D M Sbjct: 25 TTILVIEDDEIIRDIINDILSLVGFDVIEATNGQQGLEIALS-TYPDLIICDIMMPQLDG 83 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + +L + + G GA+ +L KPF+ E L A+ + Sbjct: 84 YGVLQALQCHSTTESIPFIFLTAKGTPVNIREGMDLGADDYLTKPFSEEGLLKAVTTRLK 143 Query: 120 MQKSKDENQFLDAI 133 +++ E Q+++ I Sbjct: 144 -KRASIELQYINKI 156 >gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183] gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183] Length = 1343 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ + + +R+ + + +A++ EA +++ + ++ D M + Sbjct: 1098 TILIAEDNTDIRQYLCEELGKS-YHILQASNGEEALAILKEQDT-DLILTDVMMPVMDGL 1155 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + D ++ + G + GA+ ++ KPF+ + ++ L + Sbjct: 1156 QLCKQIKQSLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMAMVAAKIKNLFRT 1215 Query: 121 QKSKDE 126 + E Sbjct: 1216 RHRAIE 1221 >gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 231 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + V GF V A+S EA ++ P+ L++D + + F Sbjct: 7 RVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQV-RQFRPHLLLLDVMLPDMEGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V + +L + + G G + ++ KPF+ E L +R + + Sbjct: 66 EVARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRTG 125 Query: 123 SKD 125 + Sbjct: 126 MAE 128 >gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407] gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407] gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC H10407] Length = 240 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLV+ + + + R D G+ + ++ EK+ + + +++D + Sbjct: 5 KKILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQ-VWDAVLLDLMLPNVDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +RQM + V + I G GA+ +L KPF+ + L ++ L + Sbjct: 64 LEICRRIRQMAGY--LPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFR 121 Query: 120 MQKSKDENQFLD 131 Q++ +N L+ Sbjct: 122 RQEAMGQNIRLE 133 >gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 232 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 4 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 119 QMQKSKDE 126 + + DE Sbjct: 121 RRIEVHDE 128 >gi|190573534|ref|YP_001971379.1| putative two-component system, response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011456|emb|CAQ45074.1| putative two-component system, response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 242 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD + +R + G+ V A A + +V+D ++ Sbjct: 7 MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADG-TAMRQLLDREHVDLIVLDLNLPRED 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++ V L + + G GA+ +L KPF L +R + + Sbjct: 66 GLTLC-RDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRR 124 Query: 121 QKSKDEN 127 ++ N Sbjct: 125 TEALPAN 131 >gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 7/130 (5%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+ + + ++ G+ + +A EA + + +++D M Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNT-IDLVILDIMMPH 61 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + +R+ + + +L + I+G GA+ ++ KPFN L + Sbjct: 62 MDGYEVVRVIREQQ--YRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNA 119 Query: 117 LPQMQKSKDE 126 + + ++ Sbjct: 120 QLRRFRQLNQ 129 >gi|152986115|ref|YP_001350288.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150961273|gb|ABR83298.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 227 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + + + G+ V A E + +V+D + G+ Sbjct: 2 RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDVMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +L+KPF L + + + Sbjct: 61 TLCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRR 119 Query: 121 QKSKDENQFLDA 132 + + A Sbjct: 120 AQGGGRRELSVA 131 >gi|90022750|ref|YP_528577.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952350|gb|ABD82365.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 120 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD S +R++ G V EA +A + + ++ D +M + Sbjct: 1 MAKILIVDDSASMRQMVSFTLAGAGHQVTEAPDGADALALAKAGGSFDLVLSDVNMPKMD 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +P + L E +K G AGA +++KPF+ + L + ++ Sbjct: 61 GISLVKELRTLPTFKFTPILMLTTESGSDKKAEGKNAGATGWIVKPFSPDQLIATVNKVL 120 >gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 239 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ ++ GF V A +A + + P +++D M G+ F Sbjct: 13 RVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKA-RSFRPQAMIVDVMMPGIDGF 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D V +L D + +AG GA+ ++ KPF+ E + +R + + Sbjct: 72 GLLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRR 129 >gi|309790587|ref|ZP_07685142.1| response regulator receiver modulated metal dependent phosphohydrolase [Oscillochloris trichoides DG6] gi|308227389|gb|EFO81062.1| response regulator receiver modulated metal dependent phosphohydrolase [Oscillochloris trichoides DG6] Length = 332 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R + + + AT+ EA + E P+ +++D +M Sbjct: 4 KILVVDDDPAIRDILVRILQRENYTPITATNGLEALDKVVHES-PDLILLDVTMPILDGF 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + V L D E G GA+ FL KP + LR +R ++ Sbjct: 63 EVCRRLKDNERTALIPVTMLTGLDDREHRRRGVEVGADDFLTKPIEQSLLRARLRSQLRI 122 Query: 121 QKSKDENQFLDAI 133 ++ D+ +++ Sbjct: 123 KRLTDQLDRTESV 135 >gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 228 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 5/119 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+++ + ++ G+ V A+ E C + P+ L++D + L+ Sbjct: 3 VLIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLS-CYYDSEPDLLIVDIMLPEVNGLD 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VRQ V + L + + + ++ G AGA+ +L+KPF + L ++ L + Sbjct: 62 ICRDVRQDDRL--VPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRR 118 >gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 228 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + F D G+ V A++ EA E+C+K+ + +++D M + Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDKD--IDIILLDIMMPNI 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R + +L I G G + +++KPF+ + L+ + Sbjct: 59 DGFQVCQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAH 115 Query: 118 PQMQKSKDENQF 129 + +K N Sbjct: 116 LRREKRVPLNNR 127 >gi|16330586|ref|NP_441314.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] gi|1653077|dbj|BAA17994.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] Length = 368 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + + L D+ + V A + +A + + P+ +++D M G Sbjct: 12 TILVVDDTPDNLALMSGLLKDY-YRVKIANNGEKALKVAQTLPPPDLILLDIMMPGIDGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E AH++ P + V +L + + E G GA ++ KP + L + + Sbjct: 71 EVCAHLKANPATQRIPVIFLTAKSEIEDERKGLALGAVDYITKPVSPPILMARVNTQLTI 130 Query: 121 QKSKD 125 + + D Sbjct: 131 KAAAD 135 >gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 225 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + + G++V EA EA + + +++D M + F Sbjct: 5 KILVVDDEARMRKLVKDFLSIKGYIVLEAEDGEEALKVFDTNKDIKLILLDVMMPKMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + + V V L + + G + G + ++ KPF+ + L + + + Sbjct: 65 -EVLEAIRQYSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLRRTV 123 Query: 123 SKDENQFLD 131 + E + + Sbjct: 124 GEPEEKLVA 132 >gi|312129598|ref|YP_003996938.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311906144|gb|ADQ16585.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1259 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ +R F V A + E KE +P ++ D M + Sbjct: 1014 ILVVEDHTDLRDYIAETL-KEKFQVIVAANGQEGLRLA-KEHMPELIITDLMMPVMDGMS 1071 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + + L + E I G G S+L KPF+ + + + L Q Sbjct: 1072 LSRKLRENIHTSHIPIILLTAKDTTEDRIEGYELGIASYLTKPFSAQLVISRIENLLDAQ 1131 Query: 122 K 122 K Sbjct: 1132 K 1132 >gi|310821132|ref|YP_003953490.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309394204|gb|ADO71663.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 972 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D + +R R L D +V A + P+ ++ D M Sbjct: 616 RVLVADDNSDMRGYIRSLL-DPTCVVETVQDGEAAYQAILDSP-PDLVLSDVMMPRLDGF 673 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR+ P V + L E I G +AGAN +L+KPF+ L + ++ Sbjct: 674 GLLQKVRENPKTQGVPLILLSARAGEEARIEGLQAGANDYLVKPFSARELLARIENAVRL 733 Query: 121 QKSKDENQFLD 131 + + E + L Sbjct: 734 ARERSERERLA 744 >gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 237 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + G+ +A + EA + + +++D M V Sbjct: 5 RILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDV-DLIILDIMMPKVNGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ ++ + L + + I G GA+ +L KPFN L +R + K Sbjct: 64 EACLKIREE-REMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQLRRYK 122 >gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 229 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 5/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD V + G+ V A +A + + L P+ +++D +M G L+ Sbjct: 3 ILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLV-RSLRPDGVILDVTMPVLGGLD 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R G V L + +AG AGA+ +L KPF + L +R L + Sbjct: 62 ACRALRA--SGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRRG 119 Query: 122 KSKDENQFLDAI 133 +A+ Sbjct: 120 GYAGTAARSEAL 131 >gi|260587571|ref|ZP_05853484.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|331084554|ref|ZP_08333654.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541836|gb|EEX22405.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|330401104|gb|EGG80698.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium 6_1_63FAA] Length = 237 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 8/139 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R+ + VF A E E EKE + ++D M + Sbjct: 3 MNHILIVEDDKDIREGVAIYLKSQSYEVFMAADGIEGLEVLEKEE-IHLAIVDIMMPRMD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D V L + + I G GA+ ++ KPF L + + Sbjct: 62 GITMTIKLREKH-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQMRR 120 Query: 121 QK------SKDENQFLDAI 133 + E++ D I Sbjct: 121 YRKFMEKLQAKESERTDTI 139 >gi|298528058|ref|ZP_07015462.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511710|gb|EFI35612.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] Length = 378 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 66/131 (50%), Gaps = 5/131 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD S + R++ R + N G+ + EA +ARE +E LP+ +++D M F Sbjct: 12 ILIVDDSPLNRRMLRVVLNKAGYRIQEAEDGLQAREMA-REHLPDLILLDVMMPHEDGFD 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ D+ + ++ D E ++ G G ++ KPF + + +R +++ Sbjct: 71 TCIKLKKQSSTQDIPIIFISALNDTENIVKGLELGGVDYISKPFAQTEVMARIRVHLELK 130 Query: 122 KSKDENQFLDA 132 +K+ + ++A Sbjct: 131 FAKE--RLVEA 139 >gi|107026084|ref|YP_623595.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692732|ref|YP_838265.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895458|gb|ABF78622.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650732|gb|ABK11372.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] Length = 312 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + G++V A S +A + + + P+ +++D M + F Sbjct: 2 ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 60 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + V ++ + E ++ G R G ++ KP E L + + Sbjct: 61 TCVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120 Query: 122 KSK 124 +++ Sbjct: 121 RAQ 123 >gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] Length = 234 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + + E P+ +++D + Sbjct: 3 KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VRQ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 118 Query: 120 MQKSKDENQ 128 ++ +++ Sbjct: 119 RREITQKSK 127 >gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus iners AB-1] gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] Length = 234 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + + E P+ +++D + Sbjct: 3 KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VRQ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 62 LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 118 Query: 120 MQKSKDENQ 128 ++ +++ Sbjct: 119 RREITQKSK 127 >gi|294507366|ref|YP_003571424.1| Response regulator receiver containing Stage II sporulation protein E (SpoII) domain [Salinibacter ruber M8] gi|294343694|emb|CBH24472.1| Response regulator receiver containing Stage II sporulation protein E (SpoII) domain [Salinibacter ruber M8] Length = 371 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ VR++ ++ + V+ AT+ EA + E E +P+ ++ D M + F Sbjct: 5 TILVVEDDSTVRELLKYRLGKH-YEVYTATNGEEALDQIE-ETIPDLIISDIMMPKMDGF 62 Query: 63 IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + +L D E G R G + ++ KPF+ ETL + L + Sbjct: 63 ALQSALQTDKNTRVIPFIFLTARADEEARQQGERKGVDDYITKPFDMETLLSRVERLLER 122 >gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + + + G+ +F+A++ EA E E + +++D M + Sbjct: 2 NILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNE-IHLIIMDIMMPKMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ V L + + I G GA+ ++ KPFN L ++ + Sbjct: 61 RATMKIREE-KNIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRR 117 >gi|213962318|ref|ZP_03390581.1| two-component system sensor histidine kinase/response regulator hybrid [Capnocytophaga sputigena Capno] gi|213954984|gb|EEB66303.1| two-component system sensor histidine kinase/response regulator hybrid [Capnocytophaga sputigena Capno] Length = 1347 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + +R +H+ ++ F V A E E +P+ +V D M + Sbjct: 1095 TILVVEDNDDMRDYIQHILSEH-FHVLLARDGEEGLELAIAH-IPDLIVSDIMMPKRDGI 1152 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-LPQ 119 + +R + + L +++ G G ++ KPF+ + L + L Sbjct: 1153 SMVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENILLS 1212 Query: 120 MQKSKDE 126 +K ++ Sbjct: 1213 RKKLWEQ 1219 >gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] Length = 230 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 11/137 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + F V A + + +++D + GV Sbjct: 3 KRILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQK-GLGGDFDLIILDLMLPGVDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 62 FEICRQIRDQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 118 Query: 120 MQK-----SKDENQFLD 131 + + +EN+ ++ Sbjct: 119 RYERLINSNAEENEVIE 135 >gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1] gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis MR-1] Length = 241 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + +V+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLIVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G+ + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|50083860|ref|YP_045370.1| OmpR family transcriptional regulator [Acinetobacter sp. ADP1] gi|49529836|emb|CAG67548.1| transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter sp. ADP1] Length = 228 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + + R GF V EA E + PN +++D + + Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFL-QRKPNLMILDLMVPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ +D+ + + + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116 Query: 119 QMQKSKDENQF 129 + K E + Sbjct: 117 RRLDRKAEPEQ 127 >gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 235 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ + GF T +A E E +++++D + + Sbjct: 3 KQILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEP-FDFILLDIMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + + D + GA+ +L KPF+ L ++ + + Sbjct: 62 IEVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRT 121 Query: 122 KSKDEN 127 + + Sbjct: 122 SKEQQE 127 >gi|220904004|ref|YP_002479316.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868303|gb|ACL48638.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 259 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 SLLLV+ + + G+ + A + E + +V+D + G+ Sbjct: 4 SLLLVEDNEDILANLYAYLEPLGYTLDCARNGKAGLEMALGRG-FDCIVLDVMLPGMDGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + V L +AG AGA+ +L+KPF + L +R L + Sbjct: 63 SLCRRLRQEYRVS-TPVIMLTARDAVADRVAGLEAGADDYLVKPFALKELEARIRALLRR 121 Query: 121 QKSKDEN 127 + N Sbjct: 122 GHLQGSN 128 >gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 235 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + G+ A + EA E E E+ + +++D + G+ Sbjct: 1 MTRILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYE-EMEFDLVLLDLMLPGIS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R+M V + + + +I G GA+ ++ KP++ L + + + Sbjct: 60 GTTLC-RRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRR 118 >gi|15888624|ref|NP_354305.1| response regulator PleD [Agrobacterium tumefaciens str. C58] gi|15156350|gb|AAK87090.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 456 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A +A C++E + +++D M G+ F Sbjct: 4 RVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALAICDEE-QVDIILLDIMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKANPNTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLVRL 122 Query: 121 QKSKDENQFLDA 132 + DE + Sbjct: 123 KAVSDELRLRAE 134 Score = 58.7 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 13/129 (10%), Positives = 38/129 (29%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 +L+ D ++ V T A ++++ + E Sbjct: 156 RVLVADGRASSQERIIRALKPV-AEVDAVTEPQAALLKAASSP-FELVIVNSNFEDYDPL 213 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + + + + + E + G N ++L+P + L + Sbjct: 214 RLCSQFRSLERTRFLPLLLVAEQGADEMVARALDLGVNDYILRPIDPNELVARSLTQIRR 273 Query: 121 QKSKDENQF 129 ++ + + Sbjct: 274 KRYNEHLRL 282 >gi|307317852|ref|ZP_07597290.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti AK83] gi|306896614|gb|EFN27362.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti AK83] Length = 455 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A A CEK + + +++D M G+ F Sbjct: 4 RILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPV-DLVLLDIMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLVRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KNVSDELRLRA 133 Score = 72.9 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 49/133 (36%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 S+LLVD ++ V + A E + ++++ + + Sbjct: 155 SVLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFKA-AESSFDLIIVNANFDDYDPL 212 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + + + + + E+++ G ++++P + L L Q+ Sbjct: 213 RLCSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVAR--SLTQI 270 Query: 121 QKSKDENQFLDAI 133 ++ ++ ++ Sbjct: 271 RRKHCNDRLRASV 283 >gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 227 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 7/131 (5%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + + G+ V A + EA K+ P+ +++D M Sbjct: 1 MKKKDIRILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAV-KVAKKKSPHLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 G+ +R++P D + +L + +AG AGA+ ++ KP + L + Sbjct: 60 PGMDGIEACEQMRKIPELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKV 119 Query: 115 RELPQMQKSKD 125 + L + + ++ Sbjct: 120 KALLRRFRDEE 130 >gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 233 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+VD + + D GF + EA E E+ + +++D M + Sbjct: 1 MDRILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++ + + G GA+ ++ KPF E L ++ + Sbjct: 61 GLELCRRVRDQLKA-PIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRR 119 Query: 121 QKSKDEN 127 +K N Sbjct: 120 EKRHQMN 126 >gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+VD ++ K + G V A EA E + + +++D + Sbjct: 3 NKVLVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDY-DIILLDVMLPELNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ +DV + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQMIREK---SDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIR 118 Query: 120 MQKSKDENQ 128 K + + Q Sbjct: 119 RTKGRKQEQ 127 >gi|295677872|ref|YP_003606396.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437715|gb|ADG16885.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 247 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +VR++ + GF V + A + ++ P +V+D M + Sbjct: 3 QTILIVDDDPVVRELVSEYLHGRGFNVATLENGL-ALQRRLQQERPALVVLDIMMPELDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V L D + G GA+ +L KPF L +R + + + Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 Query: 122 KS 123 S Sbjct: 122 GS 123 >gi|206602093|gb|EDZ38575.1| Putative two component transcriptional regulator, winged helix family [Leptospirillum sp. Group II '5-way CG'] Length = 231 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + +H F F V + E L P+ +V+D + G+ Sbjct: 3 RKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLART-LHPDLIVLDLMLPGLDG 61 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ PL + + V L + D I G GA+ +++KPFN + L ++ + + Sbjct: 62 LSINRSLKKDPLTSGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILR 121 Query: 120 MQKSKDENQ 128 + + + Sbjct: 122 RTEQEPAQR 130 >gi|153806265|ref|ZP_01958933.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185] gi|149130942|gb|EDM22148.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185] Length = 1330 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA KE P+ ++ D M + Sbjct: 1063 QRILIVEDNDELRSYLVSSLSSM-YHVQACGNGREAL-IIAKEFWPDLILSDIMMPEMRG 1120 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L D ++ G GA+++++KPFN L+ ++ L Sbjct: 1121 DELCVAIKNDIETSHIPVLLLTALGDENNILDGMSIGADAYIVKPFNVRILKASIANLLA 1180 Query: 120 MQKSKD 125 + Sbjct: 1181 NRALLR 1186 >gi|39936632|ref|NP_948908.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192292455|ref|YP_001993060.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39650488|emb|CAE29011.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] gi|192286204|gb|ACF02585.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ R + V A E E + + +V+D + G Sbjct: 7 SILVVEDDRETRALIAKYLRANNCNVATAADGRE-MERWIADHRVDLVVLDVMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L D I G GA+ +L KPFN L +R + + Sbjct: 66 SLCRKIRANSA---LPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRR 122 Query: 121 QKS 123 Q S Sbjct: 123 QAS 125 >gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074] gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074] gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGV-DLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|220906498|ref|YP_002481809.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219863109|gb|ACL43448.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 120 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+V+ + ++ D G+ V A + EA + K P+ +V D M + Sbjct: 1 MSTVLVVEDTPSELELISSYLRDSGYRVLSAANGKEALDQAMKHH-PDVVVTDVVMPEMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++++ P +V + + + + GA+ ++ KPFNRE L A+R L Sbjct: 60 GFELCRNLKKNPATQNVPIVICSSKNQELDRLWALKQGADGYITKPFNREDLVRAVRSLL 119 >gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family [Cupriavidus metallidurans CH34] Length = 223 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ + + + G++V A+ +A E E + +++D + + Sbjct: 2 RILLIEDEATLARQLADTLSQAGYVVDHASDGIDA-EHLGTENPYDAVILDLGLPKLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V V L + + + G AGA+ +L KPF E L +R L + Sbjct: 61 TVLKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRR 118 >gi|302037676|ref|YP_003797998.1| chemotaxis regulator CheY [Candidatus Nitrospira defluvii] gi|300605740|emb|CBK42073.1| Chemotaxis regulator CheY [Candidatus Nitrospira defluvii] Length = 123 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD S +R++ G+ V EA + EA P+ +V D +M + Sbjct: 3 KTVLVVDDSPTMRQMVAFTLTSAGYQVVEAGNGKEAVGKVNGGAKPDLVVTDLNMPEMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R+MP + L E +K AG AGA +++KPFN E + ++++ Sbjct: 63 ITLIKEIRKMPALKFTPILMLTTEASDDKKKAGQAAGATGWIVKPFNPEQMMAVIKKVL 121 >gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD VR+ R G+ V A+ EA E E P L++D M + Sbjct: 1 MK-ILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSEN-PELLILDVMMPNMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + L +AG AGA+ +L KPF E L +R L Sbjct: 59 GLEVCRTLRSEGWDRS--ILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLV 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRAAA 121 >gi|218439228|ref|YP_002377557.1| AraC family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171956|gb|ACK70689.1| two component transcriptional regulator, AraC family [Cyanothece sp. PCC 7424] Length = 265 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + + GF + A + + +E LP+ ++ D M + Sbjct: 1 MTRILLIEDDQLNCTLLQECLESEGFHIISAEDGFKGLQQA-REFLPDLILCDIIMPELD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ P + +L + + G GA+ +L KP + A+ Sbjct: 60 GYSVLLQLRQDPSTAFIPFIFLTAKTSKAEYRRGMELGADDYLTKPLTAHEVIAAVETRL 119 Query: 119 QMQKSKDE 126 + + + Sbjct: 120 ERKAMLER 127 >gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 245 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD R G+ V A EA E P+ +V D M + Sbjct: 22 TILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEA-YHPDLIVTDIVMPRMNGY 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + VRQ P + V L ++ I G ++G + +L KPF E L A+R L + Sbjct: 81 ELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIRNLLER 140 Query: 121 QK 122 + Sbjct: 141 SQ 142 >gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L++D I+ K + G+ A E E + +++D + Sbjct: 3 KKILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHY-DLIILDIMLPKING 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + D I G GA+ +L KPFN L+ ++ + + Sbjct: 62 LEVCRQVREQSS---VPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family [Desulfonatronospira thiodismutans ASO3-1] gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family [Desulfonatronospira thiodismutans ASO3-1] Length = 232 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 53/129 (41%), Gaps = 5/129 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+++ ++ + G+ VF + + + +E P +++D + Sbjct: 1 MKKSKILVIEDEEDIQNLLHINLEAAGYRVFLTDNGYDGLKIA-REEQPELIILDLMLPH 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +++ D+ V + + + + G GA+ +++KPF+ L ++ Sbjct: 60 MDGLEVCRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADDYVVKPFSIRELLLRIKA 119 Query: 117 LPQMQKSKD 125 + + + D Sbjct: 120 VLRREYRSD 128 >gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM 17393] gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM 17393] Length = 1342 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R + LF+ + V EA E + KE+ P+ ++ D M + + Sbjct: 1093 KILIVEDNEELRGLLVRLFSKV-YSVCEAQDGEEGLDK-TKEIQPDIVLSDIMMPKMSGI 1150 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L + E + G + GA+ ++ KPFN + L L Sbjct: 1151 EMCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNS 1210 Query: 121 QKSKDE 126 +K + Sbjct: 1211 RKLLQK 1216 >gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ V A +E P+ +++D + G+ Sbjct: 5 ILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAA-RESNPDLVILDWMLPGISGPE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G V + L + + ++G AGA+ +++KPF+ E L +R + ++ Sbjct: 64 ICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRRNQT 123 Query: 124 KDEN 127 +D N Sbjct: 124 EDPN 127 >gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+V+ + ++ GF V A EA + P+ +V+D + F Sbjct: 13 TLLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARH-RPDLVVLDVMLPDFDGF 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + YL E + G G + ++ KPF+ E + +R + + K Sbjct: 72 EVARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRRSK 131 >gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein SYNPCC7002_A0851 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] Length = 251 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 10/128 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ ++R + + G+ VF A + + ++ + +++D + Sbjct: 20 RILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIML 79 Query: 57 E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 L+ +R G + + L + + G GA+ +L KPF+ L Sbjct: 80 PEVNGLDLCRFLR--YQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARC 137 Query: 115 RELPQMQK 122 R L + Q+ Sbjct: 138 RALLRRQQ 145 >gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402] gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402] gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 230 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + VF+ EA + +K + ++D M + F Sbjct: 4 NILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHY-DLAILDVMMPDLDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V L + + I G GA+ +L KPFN L ++ + Sbjct: 63 SLLKKIREDYFF---PVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQLRR 119 Query: 121 QKSKDENQ 128 + N+ Sbjct: 120 YTRYNTNE 127 >gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 254 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 33 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 91 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 92 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 Query: 121 QK 122 + Sbjct: 149 YQ 150 >gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908] gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 241 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G+ + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQNGSPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] Length = 231 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + R + G++V A E + +E + +++D + G+ F Sbjct: 2 KVLVVEDEKKLADYLRRALTEHGYVVDVAGDGREGL-YFAQETPYDLILLDVMLPGMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V V L E + G GA+ +L KPF+ L + L + Sbjct: 61 -QLLRELRKKSRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARR 117 >gi|326567041|gb|EGE17164.1| two-component system response regulator [Moraxella catarrhalis 12P80B1] Length = 240 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 5/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60 +LL++ + ++ + + V A + + + KE + +V+D + + Sbjct: 3 KQILLIEDDPDLAELISDYLSINYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMD 62 Query: 61 E--FIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 VR V + L + D + G GA+ ++ KPF L +R Sbjct: 63 GMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122 Query: 117 LPQMQKSKDE 126 + + ++ ++ Sbjct: 123 VLRRHETPNQ 132 >gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 8/131 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M S+L+VD ++ K R G V A EA K+ + +++D + Sbjct: 1 MASVLVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLA-KQKEYDVVLLDVMLPKYD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +++ + L + + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GYEVCQAIRE---FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIM 116 Query: 119 QMQKSKDENQF 129 + + +N+ Sbjct: 117 RR--NSKKNKR 125 >gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] Length = 234 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 7/134 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA E + + +++D + + Sbjct: 3 RKILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTY-DMVLLDLMLPKIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ ++V + L + D I G GA+ ++ KPFN ++ M+ + + Sbjct: 62 IAVCQQVRE---FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFR 118 Query: 120 MQ-KSKDENQFLDA 132 S+ E + +A Sbjct: 119 RSGGSESEGRQSEA 132 >gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 250 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 10/127 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE------KELLPNYLVIDESM 56 +L+V+ ++R + + G+ V A+ A + E + +V+D + Sbjct: 20 RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLML 79 Query: 57 E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 L+ +R V + L + + G GA+ +L KPF+ L Sbjct: 80 PQVNGLDICRLLRYNNNI--VPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQ 121 R L + Q Sbjct: 138 RALIRRQ 144 >gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 226 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ ++K HL + +A A E +E + +++D ++ Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYREN-FDLVILDLNLPKQD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ DV V L + I G G + +L KPF+ L ++ + Sbjct: 60 GFSVLKEIKNRE---DVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVL 116 Query: 119 QM-QKSKDENQFLD 131 + +K + E + L Sbjct: 117 RRYRKGRGEEEILK 130 >gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565] gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565] Length = 226 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHV 66 VD + ++ + GF V A E + E + +++D M + F A + Sbjct: 2 VDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQRL-AEQSFDLVLLDVMMPKLNGF-AML 59 Query: 67 RQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDE 126 ++ D V L D + + G AGA+ +L KPF+ L +R + + +S Sbjct: 60 TKLRKTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQSAPP 119 Query: 127 NQ 128 + Sbjct: 120 QR 121 >gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 276 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 1/114 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + R G V A + + + LV+D + G+ F Sbjct: 3 VLVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGT-FDALVLDVMLPGLDGFE 61 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 R G V + L + G +GA+ +L+KPF L+ +R L Sbjct: 62 ICRRLRAEGNPVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRAL 115 >gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7] gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050 [Bacillus amyloliquefaciens DSM 7] gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens TA208] Length = 225 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D +R++ R + GF V EA A + E + +++D M + Sbjct: 1 MAVILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTH-IDLIILDVMMPKMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR TD+ + L + + + G +GA+ +L+KPF L ++ L Sbjct: 60 GFEVSEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALL 116 Query: 119 QMQKSKDE 126 + + E Sbjct: 117 KRYRITAE 124 >gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 225 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + E+ + +++D M + F Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1] gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1] Length = 243 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + V + F G E + KE + +++D + G+ Sbjct: 10 MK-VLVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRY-KEGEWDLVILDWMLPGMD 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + T + + L + + G GA+ ++ KPF+ L +R + + Sbjct: 68 GVTICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRR 127 Query: 121 QKSKDEN 127 + + N Sbjct: 128 YQGEKNN 134 >gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU121] Length = 233 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ VF A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQFLDA 132 S+ + DA Sbjct: 119 RHYSQPAQEVNDA 131 >gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 229 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + ++ + + + A A + +E + + +++D + G Sbjct: 3 KKILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKL-RETVYDLVILDLMLPGIQG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R + + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVMR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|198283275|ref|YP_002219596.1| winged helix family two component transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665852|ref|YP_002425862.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247796|gb|ACH83389.1| two component transcriptional regulator, winged helix family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518065|gb|ACK78651.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans ATCC 23270] Length = 243 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++++ R GF V SV A E + P LV+D + G Sbjct: 9 RVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESA-EAVLQTWGPQLLVLDWMLPGKNGL 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L + + G +GA+ +L KPF+ L + L + Sbjct: 68 AWCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLRR 127 >gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4] gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 241 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQM G + + L + D I G GA+ +L KPFN L ++ + + Sbjct: 66 SICRRLRQM--GNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 Query: 121 Q 121 Q Sbjct: 124 Q 124 >gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 251 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 13 KRVLIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNW-DALILDLMLPGVDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 72 LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRA 131 Query: 122 KSKDENQFLDA 132 + ++ ++A Sbjct: 132 DAMAKDARMEA 142 >gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] Length = 228 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 7/126 (5%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + + G+ VF A + E + +K+ P+ +++D M Sbjct: 1 MKDAIAKILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKK-PDLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R++P + +L + MIAG AGA+ ++ KP L + Sbjct: 60 PVMDGIEACEQIRKIPELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKV 119 Query: 115 RELPQM 120 + L + Sbjct: 120 KSLLRR 125 >gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101] Length = 240 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLE 61 +LLV+ + + L G +V + A + + ++D + + Sbjct: 4 RILLVEDEPDLAEALVALLEQQGHVVDHCSDGLSAWTLLSGDLARYDLALVDWMLPQLSG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G V V L + G AGA+ +L KPF E L +R L + Sbjct: 64 VELCRRLRAAGFTVPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRALQRRH 123 Query: 122 KSKDENQF 129 E Q Sbjct: 124 PGYREPQL 131 >gi|268317350|ref|YP_003291069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodothermus marinus DSM 4252] gi|262334884|gb|ACY48681.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodothermus marinus DSM 4252] Length = 461 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R+ R + G+ V EA EA E +E + +++D M + Sbjct: 4 TILVVDDERSIRRTLREILEYEGYAVEEAADGDEALEKL-REGRYDLVLLDIKMPRRDGM 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + + ++ V + E + R GA F+ KP + L +R + Sbjct: 63 EVLRTLAAEQ--PELPVVMISGHGTIETAVEATRLGAFDFIEKPPDLNRLLLTVRNALER 120 Query: 121 QKSKDENQFLDAI 133 + + EN+ + + Sbjct: 121 GQLQTENRRIRQV 133 >gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] Length = 225 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + F V EA +A + +++D M + Sbjct: 5 KVLVVDDESRMRKLVKDFLVKKDFTVLEAEDGAQAVDVFFSTKDIALVILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R ++V + L D + G G + ++ KPF+ + L + + + Sbjct: 65 QVCREIR---GVSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 121 QKSKDENQFLDA 132 + ++ + A Sbjct: 122 SNALAPDKIMTA 133 >gi|119490634|ref|ZP_01623039.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC 8106] gi|119453799|gb|EAW34956.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC 8106] Length = 329 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +V + G+ V AT +A E + P+ +++D M + Sbjct: 10 VLVVDDITRNLQVLADMLEQVGYEVTFATDGQQALERAKVAE-PDLILLDLMMPKMNGLE 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ V +L + E ++ + GA ++ KPF L +R +++ Sbjct: 69 VCQKLKNDEKLCEIPVIFLTASEEKEHLLEAFKQGAVDYITKPFYAPELLARVRVHLELK 128 Query: 122 KSKDEN 127 +KDE Sbjct: 129 YTKDEL 134 >gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 255 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR+V G+ V A +A E E P+ +V+D + + F Sbjct: 14 TVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSES-PDLIVLDVMLPKLDGF 72 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 73 AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 129 >gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08] Length = 229 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 4/123 (3%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ + + + G+ V A + EA + E E P+ +++D + + Sbjct: 1 MKKYVLLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIE-EKTPDLILLDLMLPDM 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R + + + + + I G GA+ +++KPF+ + + Sbjct: 60 SGLEICRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAM 119 Query: 118 PQM 120 + Sbjct: 120 LKR 122 >gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 241 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA EA + +++D + + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDY-ACILLDLMLPEMDGIT 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + + L + + + G +GA+ +++KPF+ + ++ L + + Sbjct: 64 VASKLRE-HKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQV 122 Query: 124 KDENQ 128 Q Sbjct: 123 ATAEQ 127 >gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24] gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans TK24] gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTAVD-AGLQGGIDLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|16332199|ref|NP_442927.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] gi|1000118|gb|AAB41278.1| orf 421 [Synechocystis sp. PCC 6803] gi|1653828|dbj|BAA18739.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] Length = 421 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGV 59 M ++L+V+ I+R++ + + + EA + A E++P+ ++ D M + Sbjct: 1 MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 I +++ + +L + G +GA+ +L+KPF +E L A+ Sbjct: 61 DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120 Query: 118 PQMQ 121 Q Q Sbjct: 121 LQKQ 124 >gi|15965047|ref|NP_385400.1| response regulator PleD [Sinorhizobium meliloti 1021] gi|307301119|ref|ZP_07580888.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti BL225C] gi|15074226|emb|CAC45873.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Sinorhizobium meliloti 1021] gi|306904074|gb|EFN34660.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti BL225C] Length = 455 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A A CEK + + +++D M G+ F Sbjct: 4 RILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPV-DLVLLDIMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLVRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KNVSDELRLRA 133 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 49/133 (36%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 S+LLVD ++ V + A E + ++++ + + Sbjct: 155 SVLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFEA-AESSFDLIIVNANFDDYDPL 212 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + + + + + E+++ G ++++P + L L Q+ Sbjct: 213 RLCSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVAR--SLTQI 270 Query: 121 QKSKDENQFLDAI 133 ++ ++ ++ Sbjct: 271 RRKHCNDRLRASV 283 >gi|319903038|ref|YP_004162766.1| integral membrane sensor hybrid histidine kinase [Bacteroides helcogenes P 36-108] gi|319418069|gb|ADV45180.1| integral membrane sensor hybrid histidine kinase [Bacteroides helcogenes P 36-108] Length = 1351 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLV+ +R+ + + V +A K++ P+ ++ D M E Sbjct: 1107 LLLVEDDEDMREYLTGSLSAE-YEVVGVPDGGKALALA-KDINPDIIISDIVMPVLEGDE 1164 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L + E +I G AGAN +++KPF+ L+ ++ + Q + Sbjct: 1165 LCRILKSSVDTSHIPVILLTALSERENIIFGLEAGANDYIIKPFDLAVLKARIKNILQNR 1224 Query: 122 KSKDEN 127 + E Sbjct: 1225 QHLREL 1230 >gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 249 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ G+ V EA + +A L P+ +V+D + G+ Sbjct: 13 RRVLVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARA-LDPDVIVLDLGLPGLDG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +D +V L D I G GA+ ++ KPF+ L ++ + + Sbjct: 72 VEVCRQIR---TFSDCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLR 128 Query: 120 MQKSK 124 + + Sbjct: 129 RPRQR 133 >gi|304313326|ref|YP_003812924.1| Signal transduction histidine kinase [gamma proteobacterium HdN1] gi|301799059|emb|CBL47302.1| Signal transduction histidine kinase [gamma proteobacterium HdN1] Length = 1224 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + D G+ V A + EA + E + +++D M + Sbjct: 1103 QRVLLVDDDIRNLYSLSAVLEDSGWEVRTAANGREALDILSSEGAFDLVLMDIMMPEMDG 1162 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L + + AGAN +L KP + L+ ++ Sbjct: 1163 FEAMRRIRGQAAFEKMPIIALTAKAMRDDRAQCVAAGANDYLSKPVDPSKLKAIVKMWL 1221 Score = 55.2 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+++ V + L +FGF S A + E+ P +V+D + E Sbjct: 831 LLIIEDHPEFSTVLKDLATEFGFEAACVHSAAAAHRYLER-WTPASIVLDLGLPDSPGEE 889 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 ++ ++ P + V+ + + E ++ AGA+ F+ KPF R+ + Sbjct: 890 LLSWLKAQPHTAQIPVHVISGK---ENVVMDELAGASEFIAKPFGRDRM 935 Score = 51.7 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 8/88 (9%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-------EKELLPNYLVIDESM 56 +L+++ + R + F + A+S EARE+ + + +D Sbjct: 954 VLIIEDDEVQRDLIEVSFREQEIACDLASSAVEAREYLAAMEQTPARHYGAMVVDLDLPD 1013 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEV 84 + + + Q G+ + + Sbjct: 1014 CDGFQLVDELHQSTNGS-IPIIVYTARD 1040 >gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 229 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + F D G+ V A++ EA E+C+K+ + +++D M + Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDKD--IDIILLDIMMPNI 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R + +L I G G + +++KPF+ + L+ ++ Sbjct: 59 DGFQICQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAH 115 Query: 118 PQMQKSKDENQF 129 + +K N Sbjct: 116 LRREKRVPLNNR 127 >gi|167765067|ref|ZP_02437180.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183] gi|167696695|gb|EDS13274.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183] Length = 1350 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R+ R + V ++ A KE P+ ++ D M + Sbjct: 1089 QKILIVEDNDELREYLRRTL-AENYHVQVCSNGKSALCIV-KEYFPDLIISDIMMPEMRG 1146 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E V+ + + V L + +I G + GA+ +++KPFN LR + L Sbjct: 1147 DELCQKVKNDIDTSHIPVILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLA 1206 Query: 120 MQKSKD 125 + Sbjct: 1207 NRALLR 1212 >gi|94264449|ref|ZP_01288238.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455139|gb|EAT05361.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 391 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD ++ + D G VF AT EA C P+ +++D M + Sbjct: 11 RVLVVDDQPPNIQLLAEVLAD-GHQVFIATGGAEALAICRAPKPPDLVLLDVVMPEMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V ++ E+ + G AGA ++ KP++ +R +R + Sbjct: 70 EVCRRLKADEATSAIPVIFVTARDSAEEEVVGFAAGAVDYISKPYSPAIVRARVRTQLE- 128 Query: 121 QKSKDENQFLD 131 + +N+ L Sbjct: 129 --LQSKNRILA 137 >gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] Length = 233 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V+ A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 S+ + Sbjct: 119 RHYSQPAQE 127 >gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676] gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676] Length = 233 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G + +A + E E + +++D M + Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLE-EKEFDLIILDIMMPNMDGI 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 68 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 >gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W] gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W] Length = 229 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + G+ + +A+ EA E + + +++D + + Sbjct: 6 KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETL-RNTTIDLIILDIMLPKMDGI 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + +L + + I G +GA ++ KPFN L ++ + + Sbjct: 65 EACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYR 123 Query: 123 SKDENQ 128 + Sbjct: 124 VYQTEE 129 >gi|239817228|ref|YP_002946138.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803805|gb|ACS20872.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 230 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++V+ + V + G+ A + P ++D + + Sbjct: 1 MTRIVIVEDELDIASVVQDYLRHAGYETTHFADGQSALDHLIATP-PELTLLDIMLPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + L ++ + G GA+ ++ KPF+ L +R + + Sbjct: 60 GIEVLRRAREHTSH-PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRR 118 Query: 121 QKSKDE 126 + E Sbjct: 119 TEPPAE 124 >gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGIDLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 252 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 12/131 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--------PNYLVIDE 54 +L+V+ ++R + D G+ + A ++E + LV+D Sbjct: 20 RILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDL 79 Query: 55 SME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + L+ +R G + + L + + G GA+ +L KPF+ L Sbjct: 80 MLPQVNGLDICRLLR--YQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137 Query: 113 AMRELPQMQKS 123 R L + Q Sbjct: 138 RCRALIRRQNL 148 >gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum Ice1] gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum Ice1] Length = 240 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ +R++ R F V EA A E ++ + +++D M G+ + Sbjct: 6 TVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEIL-RQGQVDLVILDVMMPGLDGW 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ ++V + +L + + G GA+ +++KPF+ L ++ L + + Sbjct: 65 TTC-RKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRS 123 Query: 123 SKDENQ 128 S + Sbjct: 124 STPPQR 129 >gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] Length = 253 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR+V G+ V A +A E E P+ +V+D + + F Sbjct: 12 TVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSES-PDLIVLDVMLPKLDGF 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 71 AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 127 >gi|15599577|ref|NP_253071.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107100035|ref|ZP_01363953.1| hypothetical protein PaerPA_01001056 [Pseudomonas aeruginosa PACS2] gi|116052415|ref|YP_792726.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218893472|ref|YP_002442341.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254238956|ref|ZP_04932279.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719] gi|254244809|ref|ZP_04938131.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192] gi|296391088|ref|ZP_06880563.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313106911|ref|ZP_07793114.1| putative DNA-binding response regulator ColR [Pseudomonas aeruginosa 39016] gi|9950611|gb|AAG07769.1|AE004854_5 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115587636|gb|ABJ13651.1| putative DNA-binding response regulator ColR [Pseudomonas aeruginosa UCBPP-PA14] gi|126170887|gb|EAZ56398.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719] gi|126198187|gb|EAZ62250.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192] gi|218773700|emb|CAW29514.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310879616|gb|EFQ38210.1| putative DNA-binding response regulator ColR [Pseudomonas aeruginosa 39016] Length = 227 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + + + G+ V A E + +V+D + G+ Sbjct: 2 RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDVMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +L+KPF L + + + Sbjct: 61 ALCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRR 119 Query: 121 QKSKDENQFLDA 132 + + A Sbjct: 120 AQGGGRRELSVA 131 >gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 232 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL D + ++ + F+ G+ V A + EA + C +P+ +++D M + Sbjct: 1 MVKLLLADDDARLSELVKEYFDGEGYEVTHAWNGREALD-CMAMEMPDIVILDVMMPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + + V V L + D I G GA+ +L KPFN L ++ + + Sbjct: 60 GF-DTLKHIRAKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR 118 Query: 121 QKSKDEN 127 + ++ Sbjct: 119 ATQEKDD 125 >gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 01V1-a] gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 01V1-a] Length = 244 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + + E P+ +++D + Sbjct: 13 KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VRQ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 72 LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 128 Query: 120 MQKSKDENQ 128 ++ +++ Sbjct: 129 RREITQKSK 137 >gi|258592344|emb|CBE68653.1| Response regulator receiver modulated metal dependent phosphohydrolase (fragment) [NC10 bacterium 'Dutch sediment'] Length = 336 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + G+ + A A E P+ +++D M G+ F Sbjct: 11 TILVVDDQQVNCTLVETILAPQGYEIISALDGERALELVAARP-PDLILLDVIMPGMSGF 69 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + + D + I G GA+ FL KPF+ L R L ++ Sbjct: 70 EVCTRLKENERTRLIPIVMVTSLSDLQDRIRGIEVGADDFLSKPFHPAELSARARSLLKL 129 Query: 121 QKSKDENQ 128 ++ DE + Sbjct: 130 KQFTDELE 137 >gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + ++ + +++D M + F Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|300864101|ref|ZP_07109000.1| Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] gi|300337917|emb|CBN54146.1| Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] Length = 315 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD ++ + G+ ATS +A E + P+ +++D M + LE Sbjct: 11 ILVVDDVTENLQLIALILEKRGYETTFATSGKQALERVQTAN-PDLILLDFMMPHMNGLE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P ++ + +L + E +I GA ++ KPF+ L +R +++ Sbjct: 70 VCEQLKANPDVAEIPIIFLTASHEQEHLIQAFEKGAVDYITKPFSTAELLVRVRTHLELK 129 Query: 122 KSKDENQ 128 +++ + Sbjct: 130 YMREQLK 136 >gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] Length = 244 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + + G+ V A EA + + E P+ +++D + Sbjct: 13 KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VRQ D+ + + + + G GA+ ++ KPF+ L ++ + Sbjct: 72 LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 128 Query: 120 MQKSKDENQ 128 ++ +++ Sbjct: 129 RREITQKSK 137 >gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 229 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+++ ++ + + F G+ V A + + P +V+D + Sbjct: 6 TILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALA-IQPALIVLDLMLPKVNGY 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ L ++ + L + ++ G + GA+ ++ KPF+ + L + + Sbjct: 65 EICRFLREEKL--EMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR 122 Query: 121 QKSK 124 Q+ + Sbjct: 123 QRKQ 126 >gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ + KV + + V A + EF E L + +++D + Sbjct: 1 MMRILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEA-LAYDLILLDVMLPKLT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ G + V L + E + G GA+ +++KPF+ L +R L Sbjct: 60 GIGLCQRIRQ--SGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALL 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + GF V A A + P+ +V+D + + F Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQAS-RPDLIVLDVMLPDMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D I G G + ++ KPF E + +R + + Sbjct: 74 TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133 Query: 123 SKDEN 127 +E+ Sbjct: 134 GSEED 138 >gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 231 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME-- 57 M S+L+VD + + + G+ V +A EA + + + +++D M Sbjct: 1 MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ +R+ + + + L + + I G GA+ +++KPFN L ++ L Sbjct: 61 NGIDTCRRIRE---TSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117 Query: 118 PQM 120 + Sbjct: 118 LRR 120 >gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] Length = 227 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LL+D + + + GF A E ++ + +++D M + Sbjct: 1 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTY-DLILLDVMMPKMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V L + + I G GA+ ++ KP + +R + + Sbjct: 60 G-IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRR 118 Query: 121 QKSKDENQ 128 + D Q Sbjct: 119 TQPSDNAQ 126 >gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + PN L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG--PNVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621] gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G +A EA + E E + +++D M + Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLE-EKEFDLIILDIMMPNLDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119 >gi|307155194|ref|YP_003890578.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985422|gb|ADN17303.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 358 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L VD + + + G+ V A + P+ +++D M G+ F Sbjct: 12 ILAVDDNPDNLFLIKLALEQEGYKVHLVEDGLTALAQIQYSP-PDLILLDVMMPGIDGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ P + + + + +I G GA+ F+ KP + L+ +R L +++ Sbjct: 71 VTRRIRQNPNIPFIPILLITAY-EEPSLIQGLDVGADEFIRKPIQIDELQARVRSLLRLK 129 Query: 122 KSKDENQ 128 +S D+ + Sbjct: 130 QSIDQRE 136 >gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + + G+ V A S EA + + P+ +++D M + Sbjct: 7 TILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEAL--IQSKRQPSLIILDVMMPEMDGI 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ T + +L I G AG + +LLKPF+ L+ + + Sbjct: 65 EVCKQLRE---TTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRR 121 Query: 121 QK 122 ++ Sbjct: 122 EQ 123 >gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 228 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + F D G+ V A++ EA E+C+K+ + +++D M + Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDKD--IDIILLDIMMPNI 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R + +L I G G + +++KPF+ + L+ + Sbjct: 59 DGFQVCQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAH 115 Query: 118 PQMQKSKDENQF 129 + +K N Sbjct: 116 LRREKRVPLNNR 127 >gi|78221776|ref|YP_383523.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193031|gb|ABB30798.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 457 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD H++R G+ V A + +A E P+ +++D + G+ Sbjct: 4 TKILVVDDEHLIRWSLEQNLKKQGYEVVSAGNGEDALRLVRDE-QPDLVLLDIQLPGISG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ V + E + R GA ++ KPFN + + +R+ + Sbjct: 63 LDVLEKIKEHDEEIIVIMVTAHGALETAVHAMRLGAFDYINKPFNLDEMAIVIRKALETS 122 Query: 122 KSKDENQFL 130 + E Q L Sbjct: 123 DLRREVQRL 131 >gi|319940603|ref|ZP_08014946.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis 3_1_45B] gi|319805969|gb|EFW02727.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis 3_1_45B] Length = 241 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLEF 62 +L+VD ++R++ G+ V A A E K + PN +++D M + F Sbjct: 8 ILVVDDESMIRRLVLANLERAGYDVMSAADGIRALEVYAKAPVKPNLVILDVMMPEMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V ++ + D + G GA+ ++ KPF+ E L +R + Sbjct: 68 ECARRLREK-KDVPVIFMTAKTDSASKLRGFDLGADDYVCKPFSMEELLARIRAILHRSS 126 Query: 123 SKD 125 Sbjct: 127 KAR 129 >gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 235 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 8/139 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59 M +L+ + +R G+ V EA A + E+ + ++D M G+ Sbjct: 1 MKKILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMPGI 60 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R G + + L + + G GA+ ++ KPF+ L + L Sbjct: 61 DGFQVCKELRNRNGG--IGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSL 118 Query: 118 PQM---QKSKDENQFLDAI 133 + +S EN F + + Sbjct: 119 YRRVALAQSHSENNFKEEL 137 >gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + +V+ ++++ ++ GF V + + E +P+ ++D + G+ Sbjct: 6 IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGED-LLAYSSENIPDLFILDIMLPGIDGLE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++Q + + L + + + G GA+ ++ KPF+ L ++ L + Sbjct: 65 VCRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKALFRRV 124 Query: 122 KSKDE 126 + E Sbjct: 125 NTATE 129 >gi|254413334|ref|ZP_05027105.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179954|gb|EDX74947.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 864 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L +D + + + + G+ + + A + P+ +++D M + Sbjct: 12 TILTIDDTPDNLHLLTEMLSAQGYKIRIIPNGRLALKSIANNP-PDLILLDIIMPDMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P ++ V +L + + G ++ KPF + + + ++ Sbjct: 71 QVCQQLKASPKTQNIPVIFLSGLNETFDKVKAFEVGGVDYITKPFQVQEVLARVESQLRL 130 Query: 121 QKSKDEN 127 Q+ + + Sbjct: 131 QRLQKQL 137 >gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 234 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V + + +A + + E P +++D + G+ F Sbjct: 5 KILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMEN-PKLILLDLMLPGLDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V++ ++ + L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 DVCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 >gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 244 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ R GF V EA +A + V+D + G+ Sbjct: 17 TVLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLL---PQADVAVLDWMLPGMTGL 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V + L E + G GA+ ++ KPF+ + ++ L + Sbjct: 74 ELARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRMG 133 Query: 123 SKD 125 ++ Sbjct: 134 VRE 136 >gi|86157260|ref|YP_464045.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773771|gb|ABC80608.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 466 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR R + G V EA A E + P ++ D M + Sbjct: 12 RVLVVDDDPGVRYTLREILASEGLEVEEAADGEAALEKLGAQPFP-LVLTDLRMPRLDGM 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V + + + +AGA + KPF E L +R + + Sbjct: 71 ALLRRITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRRAVEAVR 130 Query: 123 SKDENQFLD 131 DEN+ L Sbjct: 131 LADENERLA 139 >gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228] gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144] gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228] gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis] gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144] gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909] gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU144] gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU028] Length = 233 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V+ A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 S+ + Sbjct: 119 RHYSQPAQE 127 >gi|67921315|ref|ZP_00514834.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67857432|gb|EAM52672.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 122 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+VD ++ RK+ L GF S A E+ E P+ +++D M Sbjct: 1 MKTILVVDDTNAQRKLISALLTHAGFETANVESAKLAWEWLENNDFPDLIILDIIMPEET 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R P D+ + + + + G N ++ KPF L A+ + Sbjct: 61 GLELCRKIRANPKWKDIPIVFCSSKSEEFDRFWALHQGGNDYITKPFAPNELIHAVSKYI 120 >gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ +R + R GF + +A +A E P+ +++D + G+ Sbjct: 4 RTLLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSE-QPDLIILDLMLPGIDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R +D +V L + + + G GA+ +L KPF+ L +R + + Sbjct: 63 LEVCHRLR-TFSDAYVLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRRP 121 Query: 122 KSKD 125 + D Sbjct: 122 RHAD 125 >gi|39936994|ref|NP_949270.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39650851|emb|CAE29374.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 1021 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 9/130 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL D +H +R L D + V A E +K P+ ++ D M L Sbjct: 645 ILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKK-RRPDLVLSDVMMPRLDGLG 702 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-----E 116 + +R P D+ V +L E + G AGA+ +L KPF+ L +R Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTA 762 Query: 117 LPQMQKSKDE 126 + + E Sbjct: 763 AIRRTALRTE 772 >gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] Length = 240 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + GF V A A + P+ +V+D + + F Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQAS-RPDLIVLDVMLPDMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D I G G + ++ KPF E + +R + + Sbjct: 74 TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133 Query: 123 SKDEN 127 +E+ Sbjct: 134 GSEED 138 >gi|124024335|ref|YP_001018642.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964621|gb|ABM79377.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 268 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL++ +R++ GF V +A + + + P+ +++D + V Sbjct: 5 ILLIEDDQDMRELVSSHLEHNGFDVQKAEDGIKG-QALALQYTPDLILLDLMLPNVDGLT 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + + + G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTAGIPILMITALGGTKDKVTGFNSGADDYLTKPFDLEELQVRVKALLRR 122 >gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217] gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 240 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQQNNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L] gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L] Length = 237 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ + +R + + +MV A + EA + + N +++D M Sbjct: 1 MKDIRILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNY-NLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LMRR 120 >gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 231 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+++ + + G+ V+ E + E E+ P+ +++D + G + Sbjct: 5 KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVE-EIHPDLILLDIMLPGINGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ ++V + + + D + G +GA+ ++ KPF E L +R + Sbjct: 64 EICRKIRQH---SNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRK 120 Query: 121 QKSKDENQFL 130 K + + + Sbjct: 121 SKQLNIIREI 130 >gi|194365077|ref|YP_002027687.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347881|gb|ACF51004.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 242 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD + +R + G+ V A A + +V+D ++ Sbjct: 7 MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADG-TAMRQLLDREHVDLIVLDLNLPRED 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++ V L + + G GA+ +L KPF L +R + + Sbjct: 66 GLTLC-RDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRR 124 Query: 121 QKSKDEN 127 ++ N Sbjct: 125 TEALPAN 131 >gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 242 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA E E E P+ L++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVE-EYNPDLLILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 >gi|39998006|ref|NP_953957.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39984951|gb|AAR36307.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298506947|gb|ADI85670.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 457 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD H++R G+ V A + +A +E P+ +++D + G+ Sbjct: 4 TKILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIV-REEQPDLVLLDIQLPGISG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A + ++ V + E + R GA ++ KPFN + + +R+ + Sbjct: 63 LEALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEMSIVIRKALETS 122 Query: 122 KSKDENQFLDA 132 + E Q L + Sbjct: 123 DLRREVQRLRS 133 >gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella excrementihominis YIT 11859] gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella excrementihominis YIT 11859] Length = 260 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R + GF V A + + +E + +V+D M G Sbjct: 21 RILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRE-RFDAVVLDVMMPGEDGI 79 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + I G GA+ +L KP+N L + + + ++ Sbjct: 80 SILKRIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRRE 139 >gi|325298664|ref|YP_004258581.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] gi|324318217|gb|ADY36108.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1327 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R + R + G++VFEA EA E +K P+ ++ D M G+ F Sbjct: 1072 NVLIVEDDAHLRDLLRDILK--GYIVFEAADGKEALEKIKKTH-PDIILTDIIMNGMDGF 1128 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ P + + + + + E I + GANS+L KPF+ ++ + L Sbjct: 1129 TFIQAVKSDPNISYIPLVVISAKNSVEDQIKASNLGANSYLTKPFHPLQIKSTIENLISR 1188 Query: 121 QKSKD 125 Q+S Sbjct: 1189 QESLR 1193 >gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59 M +L+++ +R + + + G+ V A + E+ + +++D + + Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDI 60 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + +R+ V V + + + G GA+ +++KPF+ + + ++ + Sbjct: 61 SGWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAI 117 Query: 118 PQMQKSKDEN 127 E Sbjct: 118 LSRTYGASEE 127 >gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 253 Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR+V G+ V A +A E E P+ +V+D + + F Sbjct: 12 TVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSES-PDLVVLDVMLPKLDGF 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 71 AVCRRLRAESC---VPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRR 127 >gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 242 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA E E E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVE-EYNPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSR 120 >gi|300727604|ref|ZP_07060993.1| transcriptional activator protein CopR [Prevotella bryantii B14] gi|299775124|gb|EFI71727.1| transcriptional activator protein CopR [Prevotella bryantii B14] Length = 233 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 + +V+ + DFG+ + + EA + + + L++D M G+ LE Sbjct: 13 ICMVEDELNISDFVSRGLKDFGYEIDVFHNGQEAWNKLKADNRYDLLLLDIRMPGMTGLE 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H R+ + L E ++ G AGA+ +++KPF L ++ + + Sbjct: 73 ICQHYREKYGY-HTPILMLTALGTTEDIVMGLHAGADDYVVKPFKFAELIARIKAMLRRT 131 Query: 122 KSKDENQFL 130 ++ +N + Sbjct: 132 QALQQNSLI 140 >gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 1136 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L VD I +V +++ G+ V A + EA + P+ +V+D M G L+ Sbjct: 699 ILAVDDEPINLQVLQNVLQPQGYRVTTARNGTEALRNV-AQDRPDLIVLDVMMAGLSGLD 757 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ ++ + L M+AG AGAN +++KPF ++ L +R L + Sbjct: 758 VARDLRRRHGLHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLLEAS 817 Query: 122 KSK---DENQFLDA 132 +++ +EN+ L Sbjct: 818 RARSRAEENRELKE 831 >gi|253732135|ref|ZP_04866300.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724090|gb|EES92819.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 188 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + F + EA++ EA E + +++D + + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + L + + + G +GA+ +++KPF+ + ++ L + +S Sbjct: 64 VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 >gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 228 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALRKID-EVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|225377346|ref|ZP_03754567.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM 16841] gi|225210877|gb|EEG93231.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R G+ V++A E + EKE + ++D M + Sbjct: 10 NILVVEDDKEIRDGIEIFLKSQGYHVYKAADGVEGLQIIEKEP-IHLAIVDIMMPRMDGV 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L + + + G GA+ ++ KPF L + + Sbjct: 69 TMTIKLRE-HHEFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRR 125 >gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALD-AGLQGGIDLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 234 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEG 58 M +L+++ + + + G+ VF A + E K+ + +++D + Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + R + V V ++ +AG AGA+ +L KPFN E L +R + Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132 Query: 119 QM 120 + Sbjct: 133 RK 134 >gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + ++ R+ + G V + + +A + + L++D + G+ F Sbjct: 2 RILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGE-FDALLLDVMLPGMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L +I G GA+ ++ KPF+ L +R + + Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRR 118 >gi|92114536|ref|YP_574464.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797626|gb|ABE59765.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 237 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++ ++D +R++ + GF V A + +A ++ P+ L++D M G Sbjct: 7 TVAVIDDDAEIRELLHAYLSQHGFRVVLAENG-DAVPSLLRDESPDLLILDIMMPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + R + ++V + L D I G GA+ +L KPFN L ++ + + + Sbjct: 66 -SLCRDLRRHSNVPIIMLTASSDETDRILGLELGADDYLAKPFNPRELLARIKAVLRRMR 124 >gi|39995119|ref|NP_951070.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39981881|gb|AAR33343.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298504149|gb|ADI82872.1| response receiver sensor histidine kinase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 516 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 1/131 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 + +VD + + + D G+ A EA + E+E + +++D M + Sbjct: 5 KVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALERES-FDLVLLDIRMPRMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R D+ V + + + + GA ++ KPF+ + ++ + Q + Sbjct: 64 EVLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIQFNR 123 Query: 123 SKDENQFLDAI 133 ++ EN+ L + Sbjct: 124 TRLENERLQRV 134 >gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 124 DALARDSRIDA 134 >gi|317475518|ref|ZP_07934781.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908349|gb|EFV30040.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1347 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R+ + V EA + +A E KE N ++ D M + Sbjct: 1100 SILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIM-KEQEINLILTDVMMPVMDGL 1157 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + D E+ + G GA+ ++ KPF+ + +R L + Sbjct: 1158 QLCKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFRT 1217 Query: 121 Q 121 + Sbjct: 1218 R 1218 >gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + G+ V + +A + E + +++D + + F Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENY-DMVLLDVMLPKIDGFS 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+ +DV + + + D + G GA+ ++ KPF L +R + Sbjct: 65 VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRT 121 Query: 122 KSKD 125 Sbjct: 122 ALSS 125 >gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 222 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW--NEQPDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 115 Query: 119 QMQKSK 124 + K + Sbjct: 116 RRVKKE 121 >gi|218128694|ref|ZP_03457498.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697] gi|217989149|gb|EEC55464.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697] Length = 1347 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R+ + V EA + +A E KE N ++ D M + Sbjct: 1100 SILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIM-KEQEINLILTDVMMPVMDGL 1157 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + D E+ + G GA+ ++ KPF+ + +R L + Sbjct: 1158 QLCKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFRT 1217 Query: 121 Q 121 + Sbjct: 1218 R 1218 >gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + + R G+ V A + L P+ +++D + + Sbjct: 3 KNILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALT-LNPDLVLLDVMLPKLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R V + L + + + G GA+ ++ KPF L ++ + Sbjct: 62 FQVCRKIRASSS---VPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLR 118 Query: 120 MQKS 123 +S Sbjct: 119 RTES 122 >gi|113474731|ref|YP_720792.1| response regulator receiver modulated serine phosphatase [Trichodesmium erythraeum IMS101] gi|110165779|gb|ABG50319.1| response regulator receiver modulated serine phosphatase [Trichodesmium erythraeum IMS101] Length = 378 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L++D V+++ R + G+ V A++ E + + L P ++ D M + Sbjct: 4 KILVIDDDTTVQELLRRVLGKQGYTVTVASNGEEGFKQAQL-LQPALIICDWIMPRLTGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E V+ + F L + ++ G AGA+ F+ KP N ++ +R ++ Sbjct: 63 EVCRKVKASSDLSTTFFILLTSLGSVQDLVKGLDAGADDFISKPININEMKARVRAGLRL 122 Query: 121 QKSKDENQ 128 + + Q Sbjct: 123 HQLSQDLQ 130 >gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 215 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD R G+ V A + EA E +K P+ +V D +M + Sbjct: 4 TILVVDDDFGTRLSISDYLEISGYTVISAENGQEALELVDKHK-PHLIVTDITMPEMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P + V +L + I G + G +++L KPF + L +R L + Sbjct: 63 DLVKRIRSRPAFRLLPVIFLTAHTAIQSRIRGYQLGCDNYLPKPFELDELGVVIRALLER 122 Query: 121 QKSKD 125 + + Sbjct: 123 SQLIE 127 >gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ G+ A+ + +E P+ +++D + V F Sbjct: 4 KILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARRE-QPDLVLLDLMLPMVDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L V+ +AG GA+ ++ KPF+ + ++ + + Sbjct: 63 TVCRTLRAESS---VPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRR 119 Query: 121 QKSKDE 126 + E Sbjct: 120 VNGELE 125 >gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325] gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325] Length = 233 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + K+ G+ V A +A + E P+ +++D + + Sbjct: 5 KILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSED-PDLILLDLMLPEKDGM 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR ++ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 64 EVCREVRAQ---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120 Query: 121 QKSKDE 126 + E Sbjct: 121 VAKQTE 126 >gi|320162523|ref|YP_004175748.1| putative response regulator [Anaerolinea thermophila UNI-1] gi|319996377|dbj|BAJ65148.1| putative response regulator [Anaerolinea thermophila UNI-1] Length = 325 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + +V R + +D G+ V A + EA + ++ P+ ++ D M + Sbjct: 8 TRILLVEDDGSLLEVVRDILSDAGYHVITAANGEEALQAF-RQAHPDLILSDIMMPVMDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + VRQM G V +L + R GA+ +L KPF+ + L A+ + Sbjct: 67 FQLLEAVRQMEAGMLVPFIFLSARTERYDTSNARRLGADDYLFKPFSADELLTAVEARLR 126 Query: 120 MQKS 123 ++ Sbjct: 127 RREQ 130 >gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 230 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D +R + G+ V +A +A + E + + +++D M + Sbjct: 5 TVLVTDDDQDIRDGIEIYLKNEGYHVIKAADGLDALKKLENNEV-HLIILDIMMPNMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPF+ L ++ + Sbjct: 64 TATFKIREE-RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRR 120 >gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 224 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 7/131 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + GF T A + P+ +++D + G+ Sbjct: 4 KILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQD-PDLVLLDLMLPGMSGV 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + L + D ++ G +GA+ ++ KPF L +R Sbjct: 63 DICKEIRKE---SNVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARL-R 118 Query: 121 QKSKDENQFLD 131 Q S++ ++ L+ Sbjct: 119 QNSEEPSEILE 129 >gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 231 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ ++ G++ +EA EA + KE P+ +++D + + F Sbjct: 4 RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIA-KEQNPDLIILDVMLPKLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +R + + + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 -SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRIS 121 Query: 123 S 123 Sbjct: 122 L 122 >gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803] gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803] Length = 238 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 65 EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121 >gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758] gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758] Length = 235 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R+ G+ VF+A E E EKE + ++D M + Sbjct: 3 MNHVLVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEE-IHLAIVDIMMPRMD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D V L + + I G GA+ ++ KPF L + + Sbjct: 62 GIRMTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRR 120 Query: 121 QKSKDE 126 + E Sbjct: 121 YRMFAE 126 >gi|115525386|ref|YP_782297.1| response regulator PleD [Rhodopseudomonas palustris BisA53] gi|115519333|gb|ABJ07317.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 457 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A+S +A E C + + +++D M + F Sbjct: 4 RILVVDDIPANAKLLEARLSAEYFDVLTASSGAQALEICARSEC-DIILLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP L +R L ++ Sbjct: 63 EVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVADVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 72.1 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 4/112 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + + + V EA +V + L Sbjct: 157 RILLVDDRPSSFERMAQVLSSE-HTVDVEPDPAEALFHAADGDYDLLIVSLGLEDFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112 + R + + + + + D + G G N +LL+P ++ L Sbjct: 216 LCSQARSLERTRHLPILAI-ADADNNTRLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 225 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A E + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGG-IDLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 Query: 121 QKSKDEN 127 S+ + Sbjct: 120 GASEPQQ 126 >gi|237713535|ref|ZP_04544016.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262407320|ref|ZP_06083868.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] gi|229446517|gb|EEO52308.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262354128|gb|EEZ03220.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] Length = 1353 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++ +R ++ F +A + EA E KE + +V D M + Sbjct: 1104 TILIVEDNNEIRHYLSSGLSEL-FNTLDAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1161 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + + + + G + GA+ ++ KPF+ L ++ + + Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221 Query: 121 QKSKDE 126 ++ E Sbjct: 1222 RRRMLE 1227 >gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + A E ++ + +++D + G Sbjct: 1 MTRVLVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGA-DLVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ ++V V L + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRTLRQK---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 225 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 4 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R] gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R] Length = 240 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A EA + +E P+ ++D M G+ F Sbjct: 15 RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIA-REFRPDAYILDVMMPGMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D V YL + E I G GA+ ++ KPF+ E + +R + + Sbjct: 74 ELLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 133 Query: 123 SKDEN 127 + +E+ Sbjct: 134 AVEED 138 >gi|325299898|ref|YP_004259815.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324319451|gb|ADY37342.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1366 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R + V ++ EA E K+ P ++ D M + Sbjct: 1100 ILVVEDDEEIRNYISREL-AADYHVGTCSNGKEALEVIFKQE-PALIISDVMMPEMDGLT 1157 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+Q + + L + E I G GA+++L KPFN + LR + L + Sbjct: 1158 LCRMVKQNLHKRHIPIILLTAKTRDEDNIEGLETGADAYLTKPFNMKILRHTVENLIHSR 1217 Query: 122 KSKD 125 + Sbjct: 1218 EYLR 1221 >gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 231 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ ++ G++ +EA EA + KE P+ +++D + + F Sbjct: 4 RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIA-KEQNPDLIILDVMLPKLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +R + + + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 63 -SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRIS 121 Query: 123 S 123 Sbjct: 122 L 122 >gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601] gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601] Length = 239 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + +++ EA + +A + K + +++D M G + Sbjct: 6 KVLIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALK-YDYDVILLDVMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + L + + + G GA+ +++KPF+ + ++ + + Sbjct: 65 EVCKEIRM---AKATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121 >gi|222085608|ref|YP_002544138.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221723056|gb|ACM26212.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 458 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A +A C+ + +++D M G+ F Sbjct: 5 RILVVDDIPANVKLLEARLLAEYFEVLTAEDGLKALAICDS-TQVDLVLLDIMMPGMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 64 DVCERLKSDARTSHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 123 Query: 121 QKSKDENQF 129 + DE + Sbjct: 124 KTLSDELRM 132 Score = 70.2 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61 +LLVD ++ V + A E ++++ + E Sbjct: 159 ILLVDGRANSQERIVRALKPI-AQVTATSDPQAALFEV-AEKPFELVIVNSNFEDYDPLR 216 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + V + + E ++ G N ++++P + L + + Sbjct: 217 LCSQLRSLERTRFLPVLLVTEQGADEMIVRALDLGVNDYIVRPLDPNELVARSLTQIRRK 276 Query: 122 KSKDENQ 128 + D + Sbjct: 277 RYNDRLR 283 >gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W] gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W] Length = 254 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 33 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 91 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 92 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 Query: 121 QK 122 + Sbjct: 149 YQ 150 >gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 232 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++LLVD +R+ + G V A++ +A + EK +P+ ++ D M Sbjct: 6 TILLVDDEPSIRESVQAYLEYSGDLTVKVASNATDAWQVLEK-TIPDVIISDIMMPEVDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 EF+ +R + V +L I G +G +++L KPF+ E L ++ L + Sbjct: 65 YEFLEKLRNDSRFEGIPVIFLTARGMTSDRIKGYHSGCDAYLPKPFDPEELEAIVKNLLE 124 Query: 120 MQKSKDE 126 +K+ ++ Sbjct: 125 RRKTNEK 131 >gi|332706446|ref|ZP_08426507.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332354330|gb|EGJ33809.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 121 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ S R++ L G V A+ EA E E P+ +V+D M + Sbjct: 1 MSKVLVVEDSLAQRQMISDLLKGSGLKVDVASDGVEALEHIL-ESCPDVVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G R GA++++ KPF L +R+L Sbjct: 60 GYEVCRRLKADPKTQNVPVVMCSSKGEEFDRYWGMRQGADAYIAKPFQPTELIGTVRQLL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 222 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+V R GF EA + A E K + +++D M + Sbjct: 1 MAKILIVDDEANIREVVREYCEINGFETEEAENGLVAIEKV-KNTHFDCVILDVMMPVLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ + V V L + + G G + ++ KPF+ + L ++ + Sbjct: 60 GFSTCKQIKSID---QVPVIMLSARQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVL 116 Query: 119 QMQKSKDEN 127 + K N Sbjct: 117 ERGKKTQAN 125 >gi|256423550|ref|YP_003124203.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256038458|gb|ACU62002.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1313 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 LL+D + +R LF+D ++V+EA + + EK +P+ ++ D M+G+ Sbjct: 1053 LLIDDNAEIRGYLHQLFSDK-YIVYEAENGADGFAAIEK-YMPDLVISDVQMDGMDGLAL 1110 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +++ + V L + G GA+ ++ KPF+ + L ++ + + + Sbjct: 1111 CRKIKETEALCHIPVILLTAASSPASRLEGIEGGADDYITKPFDNDLLLVKVQTIIRNRN 1170 Query: 123 SKDE 126 E Sbjct: 1171 LLRE 1174 >gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 232 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 9/137 (6%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+++ + ++ + + G+ A+ E E E P+ +++D + Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSES-PDCIILDIMLP 59 Query: 58 --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 E +R V + L + + +I G GA+ +++KPF+ L ++ Sbjct: 60 KLNGWEVCKTIRMED--RHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVK 117 Query: 116 ELPQMQ-KSKDENQFLD 131 + + S+ E L Sbjct: 118 TVLRRTILSESEKDRLQ 134 >gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++ +V+ ++ +V + G+ V A + E +E P+++++D + + Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKI-REGNPDFVILDLMLPDMPGE 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R L +DV + L + E I G GA+ ++ KPF+ + + + + Sbjct: 63 EICKQIR---LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRR 119 Query: 121 QKSKDENQFLD 131 ++ ++ + Sbjct: 120 TRTLNKMEIFS 130 >gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R ++V E + + +++D + G+ Sbjct: 1 MKKILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQAL-HGDYDLIILDIMLPGMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + ++ + ++ + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---NNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDENQ 128 + NQ Sbjct: 117 SRYERLASNQ 126 >gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 238 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A++ A + +E+ P+ +++D M G+ F Sbjct: 13 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKA-REVRPDAIILDVMMPGMDGF 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 72 GLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSG 131 Query: 123 SKDEN 127 + + Sbjct: 132 GRVQE 136 >gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 228 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 7 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 9/137 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + L GF V A+ A E + + +++D + G+ Sbjct: 1 MTNILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTV-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRA---TSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QM---QKSKDENQFLDA 132 + ++ + + L+ Sbjct: 117 RRGHDVSAESQEEGLEE 133 >gi|158338166|ref|YP_001519343.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158308407|gb|ABW30024.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 355 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L VD + + + G+ + S A +K P+ +++D M G+ E Sbjct: 11 ILAVDDLPDNLMLLKMMLESAGYRIELVDSGPAALAQIQKA-QPDLVILDVMMPGMSGYE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P + + + + ++ G AGA+ F+ KP E L+ +R L +++ Sbjct: 70 VTQKIRNDPQLPYIPILLISAH-ERSSVVKGLDAGADDFIRKPVELEELQARVRSLLRLK 128 Query: 122 KSKDENQ 128 +S D+ + Sbjct: 129 QSIDQRE 135 >gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 236 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A++ A + +E+ P+ +++D M G+ F Sbjct: 11 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKA-REVRPDAIILDVMMPGMDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 70 GLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 127 >gi|90424799|ref|YP_533169.1| response regulator PleD [Rhodopseudomonas palustris BisB18] gi|90106813|gb|ABD88850.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 457 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A++ +A E C + + +++D M + F Sbjct: 4 RILVVDDIPANAKLLEARLSAEYFDVLTASNGAQALEICSRAAC-DIVLLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTRV 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 67.1 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 4/112 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + + V + EA +V + L Sbjct: 157 RILLVDDRPSSYERLAPVLAAE-HAVDVEPNPSEALFHAADGNYDLLIVSLGLEEFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112 + R + V + + + D + G G N +LL+P ++ L Sbjct: 216 LCSQARSLERTRHVPILAI-ADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|326384127|ref|ZP_08205810.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197287|gb|EGD54478.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 230 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + + R GF V A + +A E K P+ +V+D + + F Sbjct: 7 VLVVDDEPQLLRALRINLRARGFEVTTAATGAQALEAASKRP-PDVVVLDLGLPDMDGFT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V V L D + AGA+ ++ KPF E +R + Sbjct: 66 V-LAGLRGWTSVPVIVLSARTDAADKVQALDAGADDYVTKPFGMEEFLARLRAAIRR 121 >gi|255263715|ref|ZP_05343057.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Thalassiobium sp. R2A62] gi|255106050|gb|EET48724.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Thalassiobium sp. R2A62] Length = 149 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D +R V R V E A + E P+ +V+D M + Sbjct: 1 MSRILIADDDATIRDVLRIALEQAHHDVVEVADGAAALDAV-SEHAPDLIVLDIGMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V +L D I G GA+ ++ KPF+ + ++ + Sbjct: 60 GLQVCQELR---RTHATPVLFLTARSDEIDRIVGLELGADDYVTKPFSPREVVARIKAIL 116 Query: 119 QM 120 + Sbjct: 117 KR 118 >gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] Length = 233 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ + ++ + F A + A E K+ + +++D + G Sbjct: 1 MNKPNILIVEDEESILEMIALNLHHNNFQPLRAINAEIA-ESFLKKNEVDLILLDWMLPG 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F+ +R ++ V L + + I G GA+ +L KPF+++ L ++ Sbjct: 60 MDGIDFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKA 119 Query: 117 LPQMQK 122 + + +K Sbjct: 120 ILRRKK 125 >gi|113952901|ref|YP_731779.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311] gi|113880252|gb|ABI45210.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311] Length = 266 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 4/123 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+LL++ + ++ GF V A + + + P+ +++D + V Sbjct: 1 MKPSILLIEDDRDMSELVGGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPNV 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ + + L + ++G +GA+ +L KPF+ E L+ ++ L Sbjct: 60 DGLTLCQRLRRDERTASIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKAL 119 Query: 118 PQM 120 + Sbjct: 120 LRR 122 >gi|290560102|pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of Yycf Length = 120 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + G+ V A EA E E EL P+ +++D + Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQ 121 Q Sbjct: 119 RQ 120 >gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 230 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D +R + G+ V +A EA + E + + +++D M + Sbjct: 5 TVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLEALDKLENNEV-HLIILDIMMPNMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPF+ L ++ + Sbjct: 64 TATFKIRAE-RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRR 120 >gi|118594849|ref|ZP_01552196.1| Response regulator receiver (CheY) modulated Serine phosphatase [Methylophilales bacterium HTCC2181] gi|118440627|gb|EAV47254.1| Response regulator receiver (CheY) modulated Serine phosphatase [Methylophilales bacterium HTCC2181] Length = 387 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + ++ L + V ATS + + P+ +++D M + Sbjct: 9 TILVVDDAPANLQLMSGLLQ-ENYRVKAATSGEKGLKIALTSPQPDLILLDIMMPEMDGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + +L + + E G GA +++KP + ++ + Sbjct: 68 EVCKRLKADERTKGIPIIFLTAKSEAEDEALGLSCGAVDYIIKPVSPPIAMARIKTHIDL 127 Query: 121 QKSKD 125 K Sbjct: 128 YHQKK 132 >gi|71909165|ref|YP_286752.1| response regulator receiver [Dechloromonas aromatica RCB] gi|71848786|gb|AAZ48282.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain [Dechloromonas aromatica RCB] Length = 384 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + + + V EA+S +A LP+ +++D M + Sbjct: 12 TILVVDDTPFNLTLMSAVLKKH-YNVKEASSGIDALTMIRSGPLPDLILLDIMMPKMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P +V V +L V + G GA ++ KP + + ++ Q+ Sbjct: 71 EVCRQIKADPATANVPVIFLTANVSSDDEEKGFALGAVDYITKPIRQRVVLARIKTHLQL 130 Query: 121 QKSKD 125 + S D Sbjct: 131 KASAD 135 >gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18] gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 233 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + ++ + GF + A E + P+ +++D + G+ + Sbjct: 8 TILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRST-PDLVLLDLMLPGMNGI 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R ++V + L + D E ++ G AGA+ ++ KPF L +R + Sbjct: 67 EVCQQIR---RSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRP 123 Query: 121 QKSKD 125 ++S+ Sbjct: 124 RESRQ 128 >gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 217 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ +RK+ + GF V E + EA E + + + +++D + Sbjct: 1 MK-ILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKF-QPSMYSVVILDVMLPQKD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ D V L + + I G GA+ +++KP + + + ++ + Sbjct: 59 GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115 Query: 119 QMQKSKDENQFL 130 + K + N L Sbjct: 116 KRTKKPNSNDIL 127 >gi|255689849|ref|ZP_05413524.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260624453|gb|EEX47324.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1373 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F+D F V A + E ++ +P+ +V D M + Sbjct: 1114 LLIVEDNEEIQKYIAESFSDS-FAVITADNGEEGKQQALSH-IPDIIVSDIMMPIMDGIT 1171 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + + L + + G GA+S+L KPF+ LR + L + + Sbjct: 1172 LCRQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1231 Query: 122 K 122 K Sbjct: 1232 K 1232 >gi|17232800|ref|NP_489348.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134447|dbj|BAB77007.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 437 Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD + KV G+ AT A E E P+ +++D M G+ F Sbjct: 12 VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAH-PDLILLDVMMPGIDGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ D + G GA ++ KPF E + ++ ++ Sbjct: 71 TCRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKIS 130 Query: 122 KSKDENQF 129 + Sbjct: 131 HLTRTLEQ 138 >gi|261253471|ref|ZP_05946044.1| response regulator [Vibrio orientalis CIP 102891] gi|260936862|gb|EEX92851.1| response regulator [Vibrio orientalis CIP 102891] Length = 240 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + V + + E P+ +++D + G F Sbjct: 4 KILVVDDDQEICELLEEYLTKQSYQVSTVNDGEQMKAEIELNGYPDLILLDVMLPGDDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +Q + V + L D I G GA+ ++ KPFN L ++ + + Sbjct: 64 TLC-QQTRRQSSVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAVLRRAS 122 Query: 123 SKDEN 127 +E Sbjct: 123 PAEEL 127 >gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 229 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F D G+ V A++ EA E+C+K+ + +++D M + F Sbjct: 4 KILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDKD--IDIILLDIMMPNIDGF 61 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +L I G G + +++KPF+ + L+ ++ + Sbjct: 62 QICQKIR---DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118 Query: 121 QKSKDENQF 129 +K N Sbjct: 119 EKRVPLNNR 127 >gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD +R++ R++ + G+ V EA EA + E +++++D M Sbjct: 7 TVLIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHK-IHFVILDVMMPKLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ + V L + + + G RAGA+ +L KPF R L M + + Sbjct: 66 ETLDILRKQSG---LPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRR 122 Query: 121 QKS 123 + Sbjct: 123 SDA 125 >gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 763 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + + V +L G V A + EA E +K + + +D M + Sbjct: 535 ILVVEDNEVNQMVLSNLLRSQGHQVEVAANGVEALELLDKNNY-DLVFMDILMPVMDGLE 593 Query: 63 -IAHVRQMPL--GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ G + + + AG + +L KP E L A+ ++ + Sbjct: 594 TTRRIREQEEITGFHIPIIAITAHAIHGDREKFLAAGMDDYLAKPVQMEELNQAISKIIK 653 Query: 120 MQKS 123 +S Sbjct: 654 KARS 657 >gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + GF V + E + +++D + GV Sbjct: 1 MSRILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHED-FDLVILDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR++ + + + + + I G GA+ ++ KPF+ + ++ Sbjct: 60 GFEICRKVREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHL 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R++ GF +EA +A + + E+ + +++D M + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M S+L+ D + ++ G+ V +AT EA + + +++D M Sbjct: 1 MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAV-LIIQSQPIDLVILDIMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 E +R ++ + +L + + G GA+ ++ KPF+ L + Sbjct: 60 IDGYEVARQIRIK---HNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++VD + + R G+ V A++ E P+ L++D M V Sbjct: 3 QHIMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTAD-PDMLILDVMMPQVDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + R G+ V + L + D + G AGA+ +L+KPF E L +R L + + Sbjct: 62 WEVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRRK 121 >gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 229 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + G+ + +A+ EA E + + +++D + + Sbjct: 6 KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETL-RNTTIDLIILDIMLPKMDGI 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + +L + + I G +GA ++ KPFN L ++ + + Sbjct: 65 EACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYR 123 Query: 123 SKDENQ 128 + Sbjct: 124 VYQTEE 129 >gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 228 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ + ++ R GF V A E + + +++D + G+ Sbjct: 1 MEKILIVEDDLDIAELERDYLEANGFAVAIAGDGLAG-EKAALDEKVDLVLLDIMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ + + + I G GA+ +++KPF+ L ++ Sbjct: 60 GFQVCRRIREK---RNIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHL 116 Query: 119 QMQKS 123 Q + Sbjct: 117 QRYRQ 121 >gi|171056736|ref|YP_001789085.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6] gi|170774181|gb|ACB32320.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6] Length = 382 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD ++ L G+ V A S +A E + P+ +++D M G + Sbjct: 17 ILVVDDVEQNVRLLADLLVFQGWRVSTAMSGEQALERIATD-APDLVLLDVMMPGLSGYD 75 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P + + + + + G AGA+ F+ KP NR L +R L +++ Sbjct: 76 VCRRLRAEPDHALLPIVLVTALDPTAERVKGLEAGADDFISKPINRPELMARVRSLLRIK 135 Query: 122 KSKDENQFLDA 132 D+ Q A Sbjct: 136 LLHDQVQRQRA 146 >gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 235 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A EA + +E P+ ++D M G+ F Sbjct: 10 RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIA-REFRPDAYILDVMMPGMDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D V YL + E I G GA+ ++ KPF+ E + +R + + Sbjct: 69 ELLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 128 Query: 123 SKDEN 127 + +E+ Sbjct: 129 AVEED 133 >gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] Length = 225 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + ++ GF V A + EA + P+ +++D M + F A Sbjct: 2 LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKART-FRPDAVILDVMMPVMDGFDA 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 R G D V +L E +AG GA+ ++ KPF+ E + +R + + + Sbjct: 61 VKRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGTL 120 Query: 125 DENQF 129 + Sbjct: 121 SAAER 125 >gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 233 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + K+ G+ V A A E E P+ +++D + + Sbjct: 5 KILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSEN-PDLILLDLMLPKKDGM 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR ++ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 64 EVCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120 Query: 121 QKSKDEN 127 + E+ Sbjct: 121 VLKQQED 127 >gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 243 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ G+ V+ A + +A + E+ P+ +V+D ++ L Sbjct: 5 KILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVD-EVRPDLIVLDVLLKQLNGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R++ V V ++ + D +I G G + ++ KPF+ L ++ + Sbjct: 64 DVCQQIREITA---VPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLRR 120 Query: 121 QKSKDENQ 128 Q + E + Sbjct: 121 QSLQSEQR 128 >gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator phoP [Lactobacillus salivarius CECT 5713] Length = 233 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ G+ V + +A + +++++D + G+ Sbjct: 1 MAKVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKY-DFIILDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++ L + D I G GA+ +L KPF+ + ++ + + Sbjct: 60 GIEVTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRR 119 Query: 121 QKSKDEN 127 + +N Sbjct: 120 VEHYSDN 126 >gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 306 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + GF V S A + P+ LV+D + + F Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDP-PDLLVLDVMLGDIDGF 138 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L + + G G + ++ KPF+ L +R + + Sbjct: 139 AVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAG 198 Query: 123 S 123 S Sbjct: 199 S 199 >gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 232 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 5/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 S+L+V+ + G+ V +A E P+ +V+D + Sbjct: 6 RSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDES-PDLVVLDVMLPELNG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + +RQ G D V L + I G GA+ +++KPF + L ++ + + Sbjct: 65 FEVLKELRQR--GRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLR 122 Query: 120 MQ 121 + Sbjct: 123 RR 124 >gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 234 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LL+D + + + GF A E ++ + +++D M + Sbjct: 8 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTY-DLILLDVMMPKMN 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V L + + I G GA+ ++ KP + +R + + Sbjct: 67 G-IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRR 125 Query: 121 QKSKDENQ 128 + D Q Sbjct: 126 TQPSDNAQ 133 >gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 226 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ L G V E + + +++D + G+ Sbjct: 1 MTRILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPA-DLVLLDVMLPGMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + V + L + + G GA+ ++ KP++ L + + + Sbjct: 60 GVEVC-RELRRESSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRR 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264] gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264] Length = 229 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + G+ + +A+ EA E + + +++D + + Sbjct: 6 KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETL-RNKTIDLIILDIMLPKMDGI 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + +L + + I G +GA ++ KPFN L ++ + + Sbjct: 65 EACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYR 123 Query: 123 SKDENQ 128 + Sbjct: 124 VYQTEE 129 >gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 270 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + ++ G+ V A A +E P+ +V+D + + Sbjct: 44 RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTA-REFRPDAVVLDVMLPDMDGL 102 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 103 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 162 Query: 123 S 123 + Sbjct: 163 A 163 >gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42] gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42] Length = 231 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 7/132 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + G+ V A A + + +++D M G + Sbjct: 4 RILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLV--NDSLDLVILDIMMPGISGI 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E H+R+ ++V + +L G AG + ++ KPF+ E L + + Sbjct: 62 ETCQHIRK---TSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118 Query: 121 QKSKDENQFLDA 132 E + + Sbjct: 119 YTIYQEKKEQEE 130 >gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 234 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ R + G+ V + E EK P+ +++D + G Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNT-PDLVILDLMLPGIGG 68 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +++ + + + + + + G GA+ ++ KPF+ L +R + + Sbjct: 69 MDLCKKIKEKYS---MPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLR 125 Query: 120 MQK 122 K Sbjct: 126 RTK 128 >gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 229 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF V A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRTRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|308047930|ref|YP_003911496.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307630120|gb|ADN74422.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 240 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + GF V A + E+E + LV+D + G Sbjct: 6 TKVLVVDDDMRLRNLLERYLVEQGFQVRSAADSEQMDRHLEREN-FHLLVLDLMLPGEDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G ++ + L + D I G GA+ +L KPFN L ++ + + + Sbjct: 65 LSICRRLRQKGNEIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVLRRR 124 Query: 122 KSK 124 ++ Sbjct: 125 PAE 127 >gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 228 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ VR+ + G VF + E E P+ +V+D + G+ Sbjct: 1 MPRVLIVEDDLDVRRAVQLGLRHQGHEVFAVETGEEGLEQLL-PFRPDVVVLDLMLPGMS 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V + + D ++ G GA+ +++KP L +R + Sbjct: 60 GLDVCRRIRDRD---QVPIIMVTARGDDVDVVVGLETGADDYVVKPVQARVLDARIRAVL 116 Query: 119 QMQKS 123 + Q + Sbjct: 117 RRQDA 121 >gi|317129755|ref|YP_004096037.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 230 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +RK+ R + +++ EA++ EA + + + +++D M Sbjct: 4 RILLVDDEQEMRKLLRVCLTPYSYLLDEASNGEEAIDKISAD-FYDLILLDIMMPEVDGF 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ V L D E+++ G + GA+ +L+KPF + L + + + Sbjct: 63 ELLKTLREHLDNK-TPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVIRR 121 Query: 121 QKSKD 125 K+ Sbjct: 122 TKNYK 126 >gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB [Methylacidiphilum infernorum V4] gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB [Methylacidiphilum infernorum V4] Length = 258 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ V + N GF A EA KE LP+ +V+D + Sbjct: 32 KKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKE-LPDLIVLDLMIPEFSG 90 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ ++++ P + + L + D I G GA+ ++ KPF+ L ++ + + Sbjct: 91 LDVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILR 150 Query: 120 MQ 121 + Sbjct: 151 RR 152 >gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + + + G+ + +A E + E + +++D + + Sbjct: 8 RILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKY-DLILLDIMLPKLNGM 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ+ +D+ + L + + ++ G GA+ ++ KPF E L +R + Sbjct: 67 EVCRRIRQI---SDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKR 123 Query: 121 QKSKDE 126 +K + E Sbjct: 124 KKLEIE 129 >gi|149204359|ref|ZP_01881326.1| response regulator receiver modulated serine phosphatase [Roseovarius sp. TM1035] gi|149142244|gb|EDM30291.1| response regulator receiver modulated serine phosphatase [Roseovarius sp. TM1035] Length = 428 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD S + R++ +GF V EA S EA C + P+ ++ D M G Sbjct: 22 QRVLVVDDSRLQRRILTASLQRWGFEVQEAESGEEALRLCRDQP-PDLVMSDWMMPGLSG 80 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 LEF R + + + L + D +++ G AGA+ FL KP N LR + Sbjct: 81 LEFCRKFRDLQQESYGYFILLTSKSDKDEVALGLDAGADDFLTKPVNAAELRARISAGAR 140 Query: 117 LPQMQKSKDENQFL 130 + +MQ+ E L Sbjct: 141 ILRMQRELTEKNRL 154 >gi|237722776|ref|ZP_04553257.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447298|gb|EEO53089.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1331 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + + + +A +E P++++ D M + Sbjct: 1066 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDFVISDIMMPEMSG 1123 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + M+ G GA++++ KPF+ L+ ++ L Sbjct: 1124 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLA 1183 Query: 120 MQKSKDE 126 + + Sbjct: 1184 NRALLRQ 1190 >gi|189462413|ref|ZP_03011198.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136] gi|189430851|gb|EDU99835.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136] Length = 1466 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+LLV+ + +R+ + + + + + EA + + E LP+ ++ D M + Sbjct: 1208 SILLVEDNDELRRFLKTILAES-YSILEADNGETGIKIAL-EQLPDIIISDIMMPQKNGI 1265 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + ++ + + + L + E + G + GA+ ++ KPF+ L+ + L + Sbjct: 1266 ELLNELKNNISTSHIPIILLSAKSSIESKLEGMQYGADDYITKPFSATYLKARIHNLVEQ 1325 Query: 121 QKSKDE 126 +K + Sbjct: 1326 RKRLQQ 1331 >gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 250 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 10/127 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE------KELLPNYLVIDESM 56 +L+V+ ++R + + G+ V A+ A + E + +V+D + Sbjct: 20 RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLML 79 Query: 57 E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 L+ +R V + L + + G GA+ +L KPF+ L Sbjct: 80 PQVNGLDICRLLRYNNNI--VPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQ 121 R L + Q Sbjct: 138 RALIRRQ 144 >gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis] Length = 238 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 + + D +R + + + V A +A E+ + +++D M + Sbjct: 5 RVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHY-HLVILDVMMPKIDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R T+V + L + I G GA+ ++ KPF+ + ++ + + Sbjct: 64 EVCRRMRNH---TNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120 >gi|306819902|ref|ZP_07453555.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552059|gb|EFM39997.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 244 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + +VD +R++ + G+ ++ +A E K P+ +++D M + Sbjct: 11 MKKIYIVDDEQRIRELIQMYLKKEGYDTKIFSNAKDALEEF-KNQEPDLMILDIMMREMD 69 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +DV + ++ + I G GA+ +L KPF+ L ++ + Sbjct: 70 GLELCREIRK---TSDVPIIFVSARSEELDRILGLELGADDYLAKPFSPRELMVRVKTIL 126 Query: 119 QM 120 + Sbjct: 127 KR 128 >gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 230 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ D + + K+ + GF V A EA P +++D M + Sbjct: 3 KNILIADDNIEIIKILKPYIEKEGFTVIFALDGEEALLKF-NHYNPQLILLDIMMPLMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++ + + + + I G +GA+ +++KPF+ + ++ + + Sbjct: 62 IEVCNKIREK---SNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ +R++ + VF A E + P+ +++D + G+ Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNN-PHLVLLDILLPGM 59 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +R + + +L + D + G AGA+ +L KPF+ L ++ Sbjct: 60 KGYEICQKIRMLSE---APIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKAN 116 Query: 118 PQMQKS 123 + K Sbjct: 117 LRRSKM 122 >gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 235 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ + + GF A +EL P+ +++D + G L Sbjct: 2 NILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAIT-AYQELQPDLIILDWMLPGLDGL 60 Query: 61 EFIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E A +RQ G D F+ L + + I G GA+ +L KPF+ L +R L Sbjct: 61 ELCARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARVRALL 120 Query: 119 QM 120 + Sbjct: 121 RR 122 >gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51] gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + ++ R G+ V + + L++D + + Sbjct: 1 MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAY-DILIVDLMLPQLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++++ ++ + L + I G GA+ +L KPF+ L +R + Sbjct: 60 GF-EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKR 118 Query: 121 QK 122 + Sbjct: 119 YE 120 >gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 259 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+V GF V A + + + +V+D + G+ Sbjct: 37 RVLVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSV-DLIVLDVLLPGLDGL 95 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L D ++ G GA+ +L KPF+ L +R L + Sbjct: 96 QVCREIRRSNA---VPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRR 152 >gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 235 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+VD VR + + F+ GF VF AT+ +A +E P+ +++D + G L Sbjct: 17 SVLIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDA-TQVAQEQQPDVVILDLMLPGYDGL 75 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R D+ + L + + + G AGA+ +L KPF L R + + Sbjct: 76 EVTRRLR---RSRDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRR 132 Query: 121 QKS 123 + + Sbjct: 133 RGN 135 >gi|219854302|ref|YP_002471424.1| hypothetical protein CKR_0959 [Clostridium kluyveri NBRC 12016] gi|219568026|dbj|BAH06010.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 243 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + +V + + G+ V+ A + +A K + P+ +++D + + Sbjct: 16 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNK-INPDLIILDLMLPDICG 74 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L + D E ++ G GA+ ++ KPF+ L ++ L + Sbjct: 75 EDICEMLRKRSK---VPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLR 131 Query: 120 MQK 122 + Sbjct: 132 RTE 134 >gi|161621454|ref|NP_102571.2| response regulator PleD [Mesorhizobium loti MAFF303099] Length = 457 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ F V AT+ +A E CE + +++D M + F Sbjct: 4 RILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCE-NGKVDVVLLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + V + + G AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLVRL 122 Query: 121 QKSKDENQFLDA 132 + DE + + Sbjct: 123 KSLTDELRLRAS 134 Score = 56.4 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVL 60 +LL+D + + + V + ++ + L Sbjct: 157 KVLLIDERKSSVERIQKMLRDRADLDVI--GDPHAGFFQAAETSYECVMISTAFADFDPL 214 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V + L E + E++I G G N +L++P +++ L +R + Sbjct: 215 RLCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274 Query: 121 QKSKDENQ 128 ++ D+ + Sbjct: 275 KRYNDQLR 282 >gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 241 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 19 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 75 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 76 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 133 Query: 119 QMQKSKD 125 + K + Sbjct: 134 RRVKKTE 140 >gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1387 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD G V A + + E+ + +++D M G+ Sbjct: 1264 RKVLIVDDDVRNIFALTSALEREGMQVLYAENGSDGIALLERTPGIDMVLMDVMMPGMDG 1323 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A +R+ ++ + L + AGA+ ++ KP + E L +R Sbjct: 1324 YEATAAIRRQVRFKELPIVALTAKAMRGDREKCLEAGASDYITKPVDTEQLLSLLRVWLS 1383 Query: 120 MQKS 123 +++ Sbjct: 1384 RREN 1387 Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 11/124 (8%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ ++ L GF A ++L P+ +++D + G+ Sbjct: 998 LLIIEDDANFARILGDLARTHGFKAVVALGSETGLAAV-RDLQPHAVLLDIHLPGMDGWT 1056 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKM-IAGARAGANSFLLKPFNRETLR---FAMREL 117 + ++ P + V+ L + G ++GA + L KP + E + M Sbjct: 1057 VLDRLKHDPETRHIPVHLLS----VDDAGQRGLQSGAVACLKKPVDSEQMAAIFARMHAF 1112 Query: 118 PQMQ 121 + Sbjct: 1113 ADRK 1116 Score = 61.0 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 11/104 (10%), Positives = 31/104 (29%), Gaps = 3/104 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+++ R L + EA + E + +V+D + Sbjct: 1118 KNLLVIEDDEAQRTSIVELIGGGDVRSQAVATAQEALALLQSEP-FDCVVLDLGLPDADG 1176 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 + ++ ++ V + + + ++K Sbjct: 1177 QALLGQIKGSADPWNLPVIVYTGRDLTPQQERDLKRRVEAVIVK 1220 >gi|331091201|ref|ZP_08340042.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404648|gb|EGG84187.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium 2_1_46FAA] Length = 226 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 60/141 (42%), Gaps = 13/141 (9%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + + + G+ VF A + E + P+ +++D +M Sbjct: 1 MKEKYKILIVDDEQSILDMLKLQLEFEGYAVFTAGNAKETLDKV--SYGPDIILLDINMA 58 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ A +R + +L V + I G AG + ++ KPF+ L + Sbjct: 59 GMNGLDLCASIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARIS 115 Query: 116 ELPQMQK---SKDENQFLDAI 133 + ++ +K +++FL+ + Sbjct: 116 AHLRREQRSHNKTKSKFLEEL 136 >gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus pseudintermedius ED99] Length = 233 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ VF A +A + E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIY-EKEPDIVLLDIMLPGQDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 ++ + Sbjct: 119 RHYTQPSQE 127 >gi|166033308|ref|ZP_02236137.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC 27755] gi|166027665|gb|EDR46422.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC 27755] Length = 236 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 50/126 (39%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +RK + + + V + EA P+ +++D + + Sbjct: 6 RVLIVEDDKNIRKFIQTILEANDYDVIATETGKEAYSLI-TSRCPDVVILDLGLPDMDGM 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ +++ + + + + GA+ ++ KPF L +R + + Sbjct: 65 -KILKEVRAWSNMPIIVVSARDHEKDKVEALDMGADDYITKPFGTSELLARIRAAIRHFR 123 Query: 123 SKDENQ 128 +NQ Sbjct: 124 GTSKNQ 129 >gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 238 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + +V ++ G+ V+ A A ++ P+ +++D + + Sbjct: 7 TILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALS-LHQQHQPDLVILDWMLPQLDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + V L + ++ G GA+ +L KPF L +R L + Sbjct: 66 -EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRR-- 122 Query: 123 SKDENQFLDA 132 + Q L A Sbjct: 123 DQRIQQLLQA 132 >gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 220 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + + + V E + +++D + Sbjct: 1 MTKILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTY-DLILLDLMLPNIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + D +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLEICRQIRQN---QTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAML 116 Query: 119 QMQ 121 + Q Sbjct: 117 RRQ 119 >gi|84685761|ref|ZP_01013657.1| response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84665854|gb|EAQ12328.1| response regulator [Rhodobacterales bacterium HTCC2654] Length = 433 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S R+V GF V EA S EA + ++ D M G+ Sbjct: 21 RQVLVVDDSRAQRRVLVATLTRLGFDVIEAESGEEAL-LILGSTHIDLVLSDWMMPGMTG 79 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116 LE R+MP + L + + + G GA+ FL KP + + LR + Sbjct: 80 LELCRQFRKMPRDQYGYFILLTSKNEKGAVARGLDIGADDFLTKPISPDELRARISAGDR 139 Query: 117 LPQMQKSKDENQFL 130 + +M++ +E L Sbjct: 140 ILRMERELNEKNRL 153 >gi|114566146|ref|YP_753300.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337081|gb|ABI67929.1| response regulator receiver modulated diguanylate cyclase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 301 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 5/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+ D I R V + L + +G+ V EA +A + +++ P +++D M G+ Sbjct: 2 RVLIADDDLISRTVVKALLSKWGYEVLEAGDGIQAWDILKEKDSPQLVLLDWMMPGIDGL 61 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117 +RQ+ T ++ L E +I G AGA+ ++ KPF E L +R + Sbjct: 62 ELCRRLRQLDNNTYHYIILLTGRDSKEDIIGGLNAGADDYITKPFMPEELEVRLRVGKRI 121 Query: 118 PQMQKSKDE 126 +Q+S +E Sbjct: 122 LDLQQSLNE 130 >gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 224 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 7/122 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + + GF +A E P+ +++D + G+ Sbjct: 1 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSK-PDLVLLDLMLPGM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R +D + L + D ++ G +GA+ ++ KPF L +R Sbjct: 60 DGIEVCRQIRAE---SDSPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRAR 116 Query: 118 PQ 119 + Sbjct: 117 LR 118 >gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51] gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + + R G+ + +A + +A E E++ + + +++D M + Sbjct: 2 NILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTV-HLVIMDIMMPQMDG- 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I + ++ ++ V L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 IRALMKIREERNIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRR 117 >gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 1358 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L D + +R L ND F V T +A + + LP ++ D M Sbjct: 610 RVVLADDNADMRDYIHRLLND-DFDVVAVTDGEQAWQAIRDQ-LPELVLTDVMMPKLDGF 667 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + AG + +L+KPFN L +R Q+ Sbjct: 668 GLLERLRGDDATRRLPVIMLSARAGEEARVEALDAGVDDYLVKPFNARELLAKVRSQLQI 727 Query: 121 QKSKDE-----NQFLDAI 133 + E + L++I Sbjct: 728 AHLRREGEAQVRRVLESI 745 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL + V L D+G+ A + +++D M + Sbjct: 1235 RRVLLAEDHPANALVATTLLEDYGYDCEVVPDGGTAIARWRTS-AFDLVMMDVQMPDMDG 1293 Query: 62 --FIAHVRQ---MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R+ + + +AG + ++ KPF+ L +R Sbjct: 1294 YEATRQIRRIEVQETRPRTPILAMTAHALKGDRETCLQAGMDDYIAKPFDAAELEQKLRA 1353 Query: 117 LP 118 L Sbjct: 1354 LL 1355 >gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+ D +R++ R G V EA EA + +E + VID M Sbjct: 1 MATILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPV-QLAVIDVMMPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ DV + L + + G R GA+ +L+KPF E L + L Sbjct: 60 GFELTRWLREE---RDVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALL 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 RRYRIRA 123 >gi|171058978|ref|YP_001791327.1| response regulator receiver sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] gi|170776423|gb|ACB34562.1| response regulator receiver sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] Length = 394 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D S ++R + R + D GF V EA E ++L P+ ++ D +M Sbjct: 3 KTVLVIDDSSVLRDIMREVLEDAGFNVIEAPHGQLGLERA-QQLAPDIVLCDINMPVLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-ELP 118 F+ R V + + + + M AGA+ FL KPF E L A+ +L Sbjct: 62 YGFVQAARAHEHLRTVPILMVTAMAEKKSMRRAMEAGADDFLSKPFTPEELVSAVTGQLA 121 Query: 119 QMQKSKDENQF 129 + ++ + + + Sbjct: 122 RRERHEADTER 132 >gi|152998342|ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839266|gb|ABR73242.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 244 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 + +VD +R + + F V A S E + +++D + G F Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + V V L D I G GA+ +L KPFN L ++ + + Sbjct: 67 VC-RSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122 >gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 242 Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA E E E P+ L++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVE-ECNPDLLILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120 >gi|300857600|ref|YP_003782583.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685054|gb|ADK27976.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205340|gb|ADL09682.1| Two-component regulatory protein [Corynebacterium pseudotuberculosis C231] gi|302329894|gb|ADL20088.1| Two-component regulatory protein [Corynebacterium pseudotuberculosis 1002] gi|308275579|gb|ADO25478.1| Two-component system transcriptional regulatory regulatory protein [Corynebacterium pseudotuberculosis I19] Length = 233 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ + G+ V A S + + E + +++D + Sbjct: 4 RRVLVVDDEPQMVQIISYALELEGWEVLSAASAQKGWQLL-GEYRCDLVILDVMLPDASG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V L D + + G AGA+ ++ KPF+ + L + + + Sbjct: 63 YALCERIRASGDVAATPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVR 122 Query: 120 MQKSKDENQ 128 + + Sbjct: 123 RSGGIVQQE 131 >gi|253572186|ref|ZP_04849590.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251838366|gb|EES66453.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1366 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+++ +R+ LF + V EA + E +K +P ++ D M F Sbjct: 1115 LLIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADK-YIPKLIISDIMMPVKDGFE 1172 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + +L + + + + G + +++KPFN E L+ ++ L + + Sbjct: 1173 CSREIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQR 1232 Query: 122 KSKDEN 127 + Sbjct: 1233 DLLRKL 1238 >gi|224540196|ref|ZP_03680735.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM 14838] gi|224518186|gb|EEF87291.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM 14838] Length = 1316 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + + + + F V A + EA E KE + + +V D M + Sbjct: 1066 TILLVDDNVEILTYLQKKLSR-NFKVITAQNGREALEVLGKENM-SLVVSDVMMPEMDGM 1123 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ P + V L + + G +AGA+ +L+KPF TL + + Sbjct: 1124 ELCTYIKENPSFCHLPVILLTAKSMTMYVEEGFQAGADDYLVKPFKVSTLIVRINNILSG 1183 Query: 121 QKSKDE 126 +K E Sbjct: 1184 RKKLKE 1189 >gi|254446460|ref|ZP_05059936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260768|gb|EDY85076.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 998 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + RKV H+ + G V A EA E E + +++D M + Sbjct: 876 RVLLVEDHPVNRKVATHMLSSLGVSVVVACDGLEALERVEGADKLDAVLMDWQMPVMDGL 935 Query: 63 --IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+M V + + AG + +L KP E L+ + + + Sbjct: 936 DASRKIREMKDWRAKVPIVAMTANAMRGDREKCIAAGMDDYLSKPVVPEKLKEVLSRILR 995 Query: 120 MQ 121 + Sbjct: 996 RE 997 >gi|182435453|ref|YP_001823172.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776090|ref|ZP_08235355.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178463969|dbj|BAG18489.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656423|gb|EGE41269.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + V A A + P+ +++D + + Sbjct: 1 MTRVLVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAA-RHPDVVLLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + T V + L ++ + AGA+ ++ KPF + L +R + Sbjct: 60 GV-EVIRGLRGWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRASVRR 118 Query: 121 QK 122 + Sbjct: 119 AE 120 >gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + GF V A E K+ + ++D + GV Sbjct: 1 MSKILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEY-SLFILDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKKIREE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QM 120 Sbjct: 117 AR 118 >gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 230 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD V V G+ V A E P+ +V+D + G Sbjct: 3 QRVLVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEP-PDLVVLDLMLPGVDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R P G + + L D + G + GA+ +L KPF+ L + + + Sbjct: 62 LEVCRRLRAQPGG--IPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ + ++ GF+V A S E E E++ + +++D + G+ Sbjct: 3 TQLLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGA-DLVLLDLMLPGLSG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L + G GA+ ++ KPF+ L +R + + Sbjct: 62 TDVCRRLRER---SNVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLR 118 Query: 120 MQKSKDENQF 129 + + Q Sbjct: 119 RRDGGGDEQR 128 >gi|260062158|ref|YP_003195238.1| C4-dicarboxylate transport transcriptional regulatory protein [Robiginitalea biformata HTCC2501] gi|88783720|gb|EAR14891.1| C4-dicarboxylate transport transcriptional regulatory protein [Robiginitalea biformata HTCC2501] Length = 389 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+++ +R+V + + + V EA + E E +K+ + ++ D M Sbjct: 3 MARILVIEDEAAIRRVLVKILTEENDAYQVEEAENGAEGLEKLKKQEY-DLVLCDIKMPK 61 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + D + + R GA ++ KP + L +R Sbjct: 62 MDGVEVLEAGRKSKPETPFIMISGHGDLDTAVQTMRMGAFDYISKPPDLNRLLTTVRNAL 121 Query: 119 QMQKSKDENQFLD 131 ++ EN+ L Sbjct: 122 DRKELVAENRILK 134 >gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5] Length = 245 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 60/133 (45%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++VD + +R++ R L G+ + EA + EA E E + + + +++D M G+ Sbjct: 5 RIIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLE-QGMFDLIILDIMMPGMNGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + +L + G +G + +L+KPF+ L + L + Sbjct: 64 QTCLEIRKQ---SNAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIRR 120 Query: 121 QKSKDENQFLDAI 133 + + + + Sbjct: 121 YQIYKGKENSETV 133 >gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 224 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD +R + R G+ + EA EA E C KE + +++D M + Sbjct: 1 MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKED-FDLIILDVMMPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ V L + I G G + +++KPF+ L ++ + Sbjct: 60 GFSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVI 116 Query: 119 QMQKSKD 125 KD Sbjct: 117 SRNNKKD 123 >gi|317126999|ref|YP_004093281.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315471947|gb|ADU28550.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + ++ GF V A++ E E ++ + +++D + + Sbjct: 5 RNILIVEDDKDIARIVVDHLRKEGFHVTWASTGMEGLEDFKQNS-FDLVLVDLMLPEMDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R ++V + + + + I G GA+ +L KPF+ L + + Sbjct: 64 FTLCKTIRLE---SNVPLLIISAKQEDASKIRGLDLGADDYLTKPFSLIELSARIHSHLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] Length = 219 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+V+ + + + G+ A EA + ++E + +++D + Sbjct: 1 MNRILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEG-FDLILLDIMLPEID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++R + + V +L + + E + G +AGA+ +L KPF L + + Sbjct: 60 GYELMDYIRPLE----IPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVL 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 7 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|153953680|ref|YP_001394445.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346561|gb|EDK33097.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 237 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + +V + + G+ V+ A + +A K + P+ +++D + + Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNK-INPDLIILDLMLPDICG 68 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L + D E ++ G GA+ ++ KPF+ L ++ L + Sbjct: 69 EDICEMLRKRSK---VPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLR 125 Query: 120 MQK 122 + Sbjct: 126 RTE 128 >gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L] gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L] Length = 254 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 33 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 91 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 92 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 Query: 121 QK 122 + Sbjct: 149 YQ 150 >gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 223 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R++ R G + EA + +A E C + + +++D M + Sbjct: 1 MYNILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHN-FDIIILDVMMPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R++ D V L + I G G + +++KPF+ + L + + Sbjct: 60 GFSTCHEIRKI---CDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIM 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 KRTRKAE 123 >gi|319783842|ref|YP_004143318.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169730|gb|ADV13268.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 457 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ F V AT+ +A E CE + +++D M + F Sbjct: 4 RILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCE-NGKVDVVLLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + V + + G AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLVRL 122 Query: 121 QKSKDENQFLDA 132 + DE + + Sbjct: 123 KSLTDELRLRAS 134 Score = 57.1 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVL 60 +LL+D + + + V + ++ + L Sbjct: 157 KVLLIDERKTSVERIQKMLRDRADLDVT--HDPHAGFFQAAETSYECVMISTAFADFDPL 214 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V + L E + E++I G G N +L++P +++ L +R + Sbjct: 215 RLCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274 Query: 121 QKSKDENQ 128 ++ D+ + Sbjct: 275 KRYNDQLR 282 >gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 226 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R++ + + G + EA+ EA ++ + + +V+D M + Sbjct: 1 MAKILVVDDDPNIRELVKVFLEEAGMEEILEASDGVEALSVMDQASV-DLVVMDIMMPNM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ + V L + + +++ G G + +L+KPF L ++ L Sbjct: 60 DGWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKAL 116 Query: 118 PQMQK 122 + + Sbjct: 117 LKRYQ 121 >gi|262198125|ref|YP_003269334.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262081472|gb|ACY17441.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 317 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+ D + ++ + G+ V A +A E P+ L+ D M V Sbjct: 11 RILVADDDAWILRMVTTVLKKRGYEVDTAPDGEQAYERALSNP-PDLLITDVMMPNVDGW 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ P DV V +L + I G R GA+ +L KPF E L + + Sbjct: 70 TLVKQMREHPSLCDVPVIFLTALSADDDRIHGFRLGADDYLPKPFRFEELDLRVARTLRR 129 Query: 121 QKS 123 ++ Sbjct: 130 TRN 132 >gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + ++ R G+ V + + L++D + + Sbjct: 1 MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTY-DILIVDLMLPQLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++++ ++ + L + I G GA+ +L KPF+ L +R + Sbjct: 60 GF-EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKR 118 Query: 121 QK 122 + Sbjct: 119 YE 120 >gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110] gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110] Length = 223 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLVD + + H+ + G+ V A + + E + + L++D + G Sbjct: 1 MK-ILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNY-DLLILDWMLPGKP 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L +R G + V +L + + + G AGA+ +L+KPF L +R L Sbjct: 59 GLSICQELRSQ--GQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|37676245|ref|NP_936641.1| response regulator [Vibrio vulnificus YJ016] gi|37200786|dbj|BAC96611.1| response regulator [Vibrio vulnificus YJ016] Length = 378 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + R + L + + V AT+ +A C+ LP+ +++D M + Sbjct: 7 TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSH-LPDIVLLDIMMPEMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L + E G GA ++LKP + L +R ++ Sbjct: 65 EVCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHLKL 124 Query: 121 QKSKDEN 127 + + +E Sbjct: 125 KHAMEEL 131 >gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4] gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 241 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQNGNTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1191 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 3/113 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLV+ I +K+ L +G V A + A + K + +++D M + Sbjct: 937 ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPY-DLILMDMMMPVMDGLE 995 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 H+R G + + + AG + ++ KP E L+ + Sbjct: 996 ATRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKI 1048 Score = 99.9 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 8/131 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL------LPNYLVIDESME 57 +L+VD + + R+V + + FG +A S A ++ ++ + +++D M Sbjct: 790 ILVVDDNLVNREVVCGMLHSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLLDGQMP 849 Query: 58 GVLEFIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + F VR +P + + + L + G +L KP R+ L + Sbjct: 850 EMDGFSTAPLVRGLPNCSSLPMVLLSSAGMKGDGQRSRQVGIAGYLSKPIARQDLLQMVS 909 Query: 116 ELPQMQKSKDE 126 + QM K + E Sbjct: 910 GVLQMHKVRPE 920 >gi|260463925|ref|ZP_05812121.1| response regulator receiver modulated diguanylate cyclase [Mesorhizobium opportunistum WSM2075] gi|259030300|gb|EEW31580.1| response regulator receiver modulated diguanylate cyclase [Mesorhizobium opportunistum WSM2075] Length = 457 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ F V AT+ +A E CE + +++D M + F Sbjct: 4 RILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCE-NGKVDVVLLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + V + + G AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLVRL 122 Query: 121 QKSKDENQFLDA 132 + DE + + Sbjct: 123 KSLTDELRLRAS 134 Score = 68.7 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVL 60 +LL+D + + + V + + ++ + L Sbjct: 157 KVLLIDERKSSVERIQKMLRDRADLDVT--SDPHAGFFQAAETPYECVMISTAFADFDPL 214 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V + L E + E++I G G N +L++P +++ L +R + Sbjct: 215 RLCSQLRSLDRTRFVPIILLADEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274 Query: 121 QKSKDENQ 128 ++ D+ + Sbjct: 275 KRYNDQLR 282 >gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD H + G+ +F+A + EA E ++ + +++D M + Sbjct: 5 KILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQK-IHCILMDVMMPKMDG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I + + +++ + L + + + G GA+ ++ KPFN + ++ + Sbjct: 63 IQAIMHIRETSNIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRR 120 >gi|169828266|ref|YP_001698424.1| ethylene receptor [Lysinibacillus sphaericus C3-41] gi|168992754|gb|ACA40294.1| Ethylene receptor [Lysinibacillus sphaericus C3-41] Length = 1015 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD I +V + + + + TS EA C + + ++ D M + Sbjct: 683 RILVVDDEPINLRVVETILANEPYDIVTVTSGIEAL-VCIQSHEWDLVISDVMMPKMSGY 741 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ TD+ V L + + G AGAN ++ KP + LR + L ++ Sbjct: 742 ELVRLIRKQFSITDLPVLLLTARSQPQDLENGFLAGANDYVTKPVDALELRSRVAALIKV 801 Query: 121 QKSKDENQFLDA 132 ++S E ++A Sbjct: 802 KRSIQERHRMEA 813 >gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM 17241] gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+ + +R++ GF V EA +A E E +++D M Sbjct: 3 NKILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPKKDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R ++V + L + +AG AGA+ ++ KPF+ L ++ L + Sbjct: 63 YDACREIR---GKSNVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLR 119 Query: 120 MQKSKD 125 S D Sbjct: 120 RTSSND 125 >gi|119511391|ref|ZP_01630503.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463936|gb|EAW44861.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 295 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 9/140 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+++ R + GF A + E + LP+ +V D M + Sbjct: 7 KTILIIEDDATTRNLYAKGLEAEGFKTIVAENGRIGIEKAQT-YLPDLVVCDIVMPDMDG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM----- 114 + +RQ P+ + +L + G GA+ +L KP E L A+ Sbjct: 66 YSVLQRMRQDPVTAIIPFIFLTGSDHQTDIRKGMELGADDYLTKPCTLEQLLKAIAIRLE 125 Query: 115 -RELPQMQKSKDENQFLDAI 133 + L + +Q +++ Sbjct: 126 KQSLLHRWYATKSHQMPESV 145 >gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 240 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 124 DALARDSRIDA 134 >gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 241 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + ++ + G+ E + + + +++D + G+ F Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAAL-QRSFDLIILDIMLPGLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + L E+++ G + GA+ ++ KPF L + + + + Sbjct: 63 EILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQ 122 Query: 123 SKD 125 + Sbjct: 123 LDE 125 >gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 242 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+ D + GF A EA + P+ +++D + L Sbjct: 12 TVLIADDEPSFVEALVLGLTREGFETIVANDGEEAL-ALSRSHHPDLILLDVMLPRLSGL 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ V + + + G GA+ ++ KPF L +R + Sbjct: 71 DVCRTIRQESS---VPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRR 127 Query: 121 QKSKDENQFLDAI 133 K + + Q + I Sbjct: 128 TKHQGQAQAAEEI 140 >gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550] gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + ++ + +++D M + F Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|254524497|ref|ZP_05136552.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14] gi|219722088|gb|EED40613.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14] Length = 236 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD + +R + G+ V A A + +V+D ++ Sbjct: 1 MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADG-TAMRQLLDREHVDLIVLDLNLPRED 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++ V L + + G GA+ +L KPF L +R + + Sbjct: 60 GLTLC-RDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRR 118 Query: 121 QKSKDEN 127 ++ N Sbjct: 119 TEALPAN 125 >gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + + + F GF+V+EA E ++ P+ V+D + + Sbjct: 3 KRIAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGL-RLIQDKTPDIAVLDVMLPQLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ ++ + L + + G GA+ +++KPF+ + ++ + + Sbjct: 62 FEICRKLRKEG---NIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAILR 118 Query: 120 MQKSKDEN 127 E+ Sbjct: 119 RSGKGTED 126 >gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 242 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF +F A + E + + P+ ++ D M Sbjct: 16 KILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQT-IFPDLIISDIMMPRSNGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G AG + ++ KPF+ + L ++ + Sbjct: 75 ALLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYISKPFDPDELSARVKNVINR 134 Query: 121 Q-KSKDENQFLDAI 133 Q + E I Sbjct: 135 QERLLKEAARFADI 148 >gi|124265328|ref|YP_001019332.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258103|gb|ABM93097.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 251 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESME 57 M +L+V+ + + GF + A + + P +++D + Sbjct: 1 MARAQILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLP 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + F R D+ V +L D + G GA+ ++ KPF+ L +R + Sbjct: 61 DLNGFELFKRIRERAADLPVVFLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVRTV 120 Query: 118 PQM 120 + Sbjct: 121 LRR 123 >gi|320158374|ref|YP_004190752.1| response regulator [Vibrio vulnificus MO6-24/O] gi|319933686|gb|ADV88549.1| response regulator [Vibrio vulnificus MO6-24/O] Length = 378 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + R + L + + V AT+ +A C+ LP+ +++D M + Sbjct: 7 TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSH-LPDIVLLDIMMPEMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L + E G GA ++LKP + L +R ++ Sbjct: 65 EVCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHLKL 124 Query: 121 QKSKDEN 127 + + +E Sbjct: 125 KHAMEEL 131 >gi|256819847|ref|YP_003141126.1| histidine kinase [Capnocytophaga ochracea DSM 7271] gi|256581430|gb|ACU92565.1| histidine kinase [Capnocytophaga ochracea DSM 7271] Length = 1347 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + +R +H+ N+ F V A E E +P+ +V D M + Sbjct: 1095 TILVVEDNDDMRDYIQHILNEH-FHVLLARDGEEGLELAIAH-IPDLIVSDIMMPKRDGI 1152 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-LPQ 119 + +R + + L +++ G G ++ KPF+ + L + L Sbjct: 1153 SMVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENILLS 1212 Query: 120 MQKSKDE 126 +K ++ Sbjct: 1213 RKKLWEQ 1219 >gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 230 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + G+ V + +A + E + +++D + + F Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNEN-FDMVLLDVMLPKLDGFS 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 VR+ +DV + + + D + G GA+ ++ KPF L +R + Sbjct: 65 VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRT 121 Query: 121 -QKSKDENQFLDA 132 Q + + + L A Sbjct: 122 AQSAAQDGKVLKA 134 >gi|209964834|ref|YP_002297749.1| response regulator With diguanylate cyclase (GGDEF) domain, putative [Rhodospirillum centenum SW] gi|209958300|gb|ACI98936.1| response regulator With diguanylate cyclase (GGDEF) domain, putative [Rhodospirillum centenum SW] Length = 482 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A EA + + P+ +++D M G+ F Sbjct: 4 RVLVVDDVVPNVKLLAAKLTREYFDVITAYGGPEALDKIRSQS-PDIVLLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + V + D + G AGA+ FL KP N L +R L ++ Sbjct: 63 EVCERIRSDPSVMHIPVVMVTALSDVADRVRGLEAGADDFLTKPVNDVALFARVRSLVRL 122 Query: 121 QKSKDENQFLDA 132 + DE + ++ Sbjct: 123 KMMMDEWRLRES 134 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +L+V+ S I R V EA + A E + ++ + E L Sbjct: 157 RILVVEDSSIDMDKIRETLARDRDGVVEAENCAAALELALSQDFELVIISLTLMREDGLR 216 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R V + L E D +++ G GAN +++KP +R L R + + Sbjct: 217 LCSQLRSHERTRQVPILLLADETDMDRVAKGLELGANDYVIKPIDRNELMARTRTQVRRK 276 Query: 122 KSKDENQ 128 + +D + Sbjct: 277 RYQDRLR 283 >gi|218439941|ref|YP_002378270.1| response regulator receiver protein [Cyanothece sp. PCC 7424] gi|218172669|gb|ACK71402.1| response regulator receiver protein [Cyanothece sp. PCC 7424] Length = 124 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LLV+ S R++ L + G+ V A EA EF ++ P+ +V+D M + Sbjct: 2 MRKVLLVEDSQAQREMISTLLRENGWNVSIACDGVEALEFVQQSS-PDLVVLDIVMPRMN 60 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G + GA++++ KPF L +++L Sbjct: 61 GYEVCRRLKSDPKTMNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPIELIGTIKQLL 120 Query: 119 QMQ 121 + + Sbjct: 121 RKE 123 >gi|75908776|ref|YP_323072.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702501|gb|ABA22177.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 437 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD + KV G+ AT A E E P+ +++D M G+ F Sbjct: 12 VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAH-PDLILLDVMMPGIDGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ D + G GA ++ KPF E + ++ ++ Sbjct: 71 TCRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKIS 130 Query: 122 KSKDENQF 129 + Sbjct: 131 HLTRTLEQ 138 >gi|73538366|ref|YP_298733.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Ralstonia eutropha JMP134] gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 1152 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + +R+ L + + V A +A + L+ D M G L Sbjct: 642 RILVADDNADMRQYLARLLSK-DYEVELANDGQDALARIHARSV-ELLLTDVMMPGLDGL 699 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P D+ + L E + G AGA+ +L KPF+ L + +M Sbjct: 700 GLLHALRTDPKTADLPIIMLSARAGEESLAEGVEAGADDYLTKPFSARELLARVGTHVKM 759 Query: 121 QKSKDENQFLDAI 133 + + E L+A+ Sbjct: 760 ARFRRE--ALEAL 770 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 7/121 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD L + G V A EA E + P+ +++D + + Sbjct: 1032 ILVVDDDQDSAWSLAALLDTCGHRVQTAHDGFEAIATAE-QYRPDVILMDIGLPTITGHE 1090 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R G D+ + + E AG ++ L+KP + + L L Q + Sbjct: 1091 TARRIRAESWGVDIVLIAVSGWGQEEDRRRSDEAGFDAHLVKPVDLDALLG----LLQRR 1146 Query: 122 K 122 + Sbjct: 1147 R 1147 >gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R G+ V EA S +A E + + +++D + G+ Sbjct: 1 MTNILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELF-RNRNFDVVLLDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + V + + + + I G GA+ +L KPF+ + L + L + Sbjct: 60 GFTVCQEIRKVNQKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMRR 119 Query: 121 QKSKDE 126 DE Sbjct: 120 INVGDE 125 >gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 229 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 10/137 (7%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA + K + +++D + V Sbjct: 3 KQVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMA-KNKEYDMVLLDLMLPKVDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 LSVCQQIRE---FSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQK----SKDENQFLDA 132 ++ ++ ++A Sbjct: 119 RTGKPAAAESRSRVVEA 135 >gi|160885643|ref|ZP_02066646.1| hypothetical protein BACOVA_03646 [Bacteroides ovatus ATCC 8483] gi|156109265|gb|EDO11010.1| hypothetical protein BACOVA_03646 [Bacteroides ovatus ATCC 8483] Length = 1368 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+V+ + VR+ R LF + V+EA + E KE LP+ ++ D M Sbjct: 1114 KSLLIVEDNEDVREYIRSLFISK-YTVYEAGNGEEGVRMA-KEKLPDLIISDVMMPVKDG 1171 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R + L + + ++ G+R+GA+ +++KPFN E L+ + L Sbjct: 1172 FTCCREIRTQQETAHIPFLMLTAKAEDVDVLQGSRSGADDYMMKPFNPEILKAKVDNLIL 1231 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1232 QREQLKR 1238 >gi|87303319|ref|ZP_01086112.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87282214|gb|EAQ74175.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 400 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LL+D I++ + L G V AT E + P ++ D SM G+ Sbjct: 13 TTILLIDDDRILQHILSGLLKAQGCQVLTATDGSTGLELARRH-RPQLVLCDWSMAGMDG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +Q ++ L + + G AGA+ FL KP L +R + Sbjct: 72 LEVCRRFKQDTHLAPIYFILLTSRSSLVERVEGLDAGADDFLSKPVEPSDLLARVRSGLR 131 Query: 120 MQKSKDENQFLD 131 + ++ E L Sbjct: 132 LYQANHELLVLS 143 >gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ + V ++ + + V A EA E +P+ L++D + +E Sbjct: 5 VLVAEDESAVSELLLYNLKREDYDVAIAADGEEAL-MMIDERIPDLLLLDWMLPKVSGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR + ++ + L + I G GA+ ++ KPF+ L +R + + Sbjct: 64 ICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVLRRI 123 Query: 122 K 122 + Sbjct: 124 R 124 >gi|29347801|ref|NP_811304.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29339702|gb|AAO77498.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1377 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+++ +R+ LF + V EA + E +K +P ++ D M F Sbjct: 1126 LLIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADK-YIPKLIISDIMMPVKDGFE 1183 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + +L + + + + G + +++KPFN E L+ ++ L + + Sbjct: 1184 CSREIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQR 1243 Query: 122 KSKDEN 127 + Sbjct: 1244 DLLRKL 1249 >gi|58698225|ref|ZP_00373145.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630041|ref|YP_002726832.1| response regulator PleD [Wolbachia sp. wRi] gi|58535252|gb|EAL59331.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225592022|gb|ACN95041.1| response regulator PleD [Wolbachia sp. wRi] Length = 458 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + V A EA + K+ P+ +++D M + F Sbjct: 4 KILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQ-QPDIILLDIMMPKMNGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ PL T + + + D + G AGA+ FL KP N L ++ L ++ Sbjct: 63 QVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLTRL 122 Query: 121 QKSKDENQF 129 + DE + Sbjct: 123 KMIIDELRL 131 Score = 77.9 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 43/129 (33%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ + + EA + K+ + ++ D Sbjct: 158 NILVVDEDVFQAEQIYNVLKQRFRSIKILSDPIEALKVGIKDNY-DLIISDMQFSKTDGL 216 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + L + D ++ GAN +L P + L + + Sbjct: 217 RLCSGFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276 Query: 121 QKSKDENQF 129 ++ +D + Sbjct: 277 KRYQDALRM 285 >gi|260885496|ref|ZP_05735136.2| DNA-binding response regulator/sensor histidine kinase [Prevotella tannerae ATCC 51259] gi|260852493|gb|EEX72362.1| DNA-binding response regulator/sensor histidine kinase [Prevotella tannerae ATCC 51259] Length = 952 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+++ + V + V A + + E EL+P+ ++ D M + L Sbjct: 669 RILIIEDNKDVAAYIGSQLTSR-YSVCYAENGKVGLQKAE-ELVPDLIITDLMMPEMGGL 726 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + + + + E I G AGA+++L+KPFN E LR + +L + Sbjct: 727 DVCRAIRTNEIVNHIPIIVITAKNTEEDRIKGLEAGADAYLVKPFNSEELRTRVEKLLEQ 786 Query: 121 QKSKD 125 + Sbjct: 787 RSLLR 791 >gi|255010809|ref|ZP_05282935.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] gi|313148611|ref|ZP_07810804.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313137378|gb|EFR54738.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 1331 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ + +R H +D + + ++ EA KE +P ++ D M + Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E A ++ + + + L D + ++ G + GA+ +++KPFN L+ + L Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATVANLLT 1186 Query: 120 MQKSKD 125 + Sbjct: 1187 NRALLK 1192 >gi|256424531|ref|YP_003125184.1| Crp/Fnr family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256039439|gb|ACU62983.1| transcriptional regulator, Crp/Fnr family [Chitinophaga pinensis DSM 2588] Length = 352 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++LL++ + +R+ + + V A + E +E LP+ +V D M Sbjct: 1 MKTILLIEDNDDIRENTAEILELANYRVLTAENGKTGVEMALEE-LPDLIVCDIMMPVLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +++ P D +L + + G GA+ ++ KPF+ L A+ Sbjct: 60 GYGVLHLLQKHPEVEDTPFIFLTAKSERGDFRKGMEMGADDYITKPFSGTDLLNAVESRL 119 Query: 119 QMQKSKDE 126 + + K + Sbjct: 120 KKSELKKQ 127 >gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 225 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D +R++ R + GF V EA A E + +++D M + Sbjct: 1 MAVILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAP-IDLIILDVMMPKMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR TD+ + L + + + G +GA+ +L+KPF L ++ L Sbjct: 60 GFEVSEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALL 116 Query: 119 QMQKSKDE 126 + + E Sbjct: 117 KRYRITAE 124 >gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 225 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + ++ + +++D M + F Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium 6_1_63FAA] gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium 6_1_63FAA] Length = 235 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL---PNYLVIDESME 57 M +L++D + + + A S E + ++ + +++D M Sbjct: 1 MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + F ++++ +++ V L + + E + G R GA+ +L KPF+ L + L Sbjct: 61 YMDGF-QVLKKIREVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSL 119 Query: 118 PQM 120 + Sbjct: 120 IRR 122 >gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 8/120 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + +R+V L ++ G++V EA + EA CE + + +++D M G+ F Sbjct: 4 NVLIVDDNKEIREVVNVLLSNEGYIVNEADNGAEAITKCEAQ---DLIILDIMMPGMDGF 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ T+V + +L + + G +G + +L+KPF+ L + L + Sbjct: 61 KTCRRIREL---TNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRR 117 >gi|229065284|ref|ZP_04200564.1| Two-component response regulator [Bacillus cereus AH603] gi|228716003|gb|EEL67739.1| Two-component response regulator [Bacillus cereus AH603] Length = 226 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 5/121 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ I+R+ F+ G+ V A E N +++D + + Sbjct: 1 MKKVLIIEDEKIIREAVAQYFSHDGYEVITAEDSRIGLELFTAHDDINLIILDIMLPVMD 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L D + + G GA+ ++ KPF L + L Sbjct: 61 GWSVCRRIRKN---STVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRLF 117 Query: 119 Q 119 + Sbjct: 118 K 118 >gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 223 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E ++ P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 115 Query: 119 QMQKSKD 125 + K ++ Sbjct: 116 RRVKKEE 122 >gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + G+ V + E K P+ +V+D + + Sbjct: 3 KKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEML-KPFRPDLIVLDLMLPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D IAG GA+ ++ KPF+ + L ++ + + Sbjct: 62 IQVCRELRKQSN--AVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFR 119 Query: 120 MQK 122 + Sbjct: 120 RIQ 122 >gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 241 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ ++ +V R G+ V A A P+ +++D + G+ Sbjct: 15 RKILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASN-PDLIILDRMLPGLDG 73 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + + L + I G GA+ ++ KP + L + + + Sbjct: 74 AEVCRRIRQ---TMSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLR 130 Query: 120 M 120 Sbjct: 131 R 131 >gi|158338315|ref|YP_001519492.1| diguanylate cyclase/phosphodiesterase with response regulator [Acaryochloris marina MBIC11017] gi|158308556|gb|ABW30173.1| diguanylate cyclase/phosphodiesterase with response regulator, putative [Acaryochloris marina MBIC11017] Length = 636 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ G+ V A + A + ++P+ +++D M + Sbjct: 23 ILIVDDTPHNLQILSTALTKQGYQVRGAANGSMAL-IGARNIMPDLILLDIKMPEMDGYT 81 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 ++ L D+ V ++ D + G ++ KPF + + Sbjct: 82 VCERLKSEALTQDIPVIFISALDDALDKVKAFTVGGVDYITKPFQLAEILARVENQLTIG 141 Query: 120 --MQKSKDENQFLDA 132 ++ + +N+ L A Sbjct: 142 RLQKEQRKQNERLQA 156 >gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016] gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016] Length = 243 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 10 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 69 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 127 >gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ VF AT+ EA K + P+ +++D M + Sbjct: 7 KILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARK-INPDLIILDIMMPKMDGI 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R MP + F+ +L + IAG GA+ ++ KP L + + + Sbjct: 66 EACRIMRSMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAILRR 125 Query: 121 QKSKDE 126 +E Sbjct: 126 NSKGEE 131 >gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 + +L+VD ++ K R G V A EA K + +++D + Sbjct: 3 NKILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALA-KSGEFDLILLDVMLPKLTG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E VR+ +DV + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQQVRE---FSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIR 118 Query: 120 MQKSKDENQF 129 K + Sbjct: 119 RTKKDRPEEQ 128 >gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 269 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A A + +E P+ +V+D + + Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTA-REFRPDAVVLDMMLPDMDGL 102 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 103 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAG 162 Query: 123 SKDENQFLDAI 133 + D + +++ Sbjct: 163 AAD--RRSESV 171 >gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] Length = 242 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEG- 58 SLL+V+ +R+ + GF V A E + +V+D + G Sbjct: 13 RSLLVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPGL 72 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L+ +R++ + + + G GA+ +L+KPF L R L Sbjct: 73 GGLDLCRELRRINNT--TPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRAL 130 Query: 118 PQMQKSKD 125 + + Sbjct: 131 LRRSSQSE 138 >gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R + + G+ V E+ EA + E + +++D + Sbjct: 1 MKKILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFY-EKPFDLVILDIMLPKKD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + V V + + + G GA+ ++ KPF+ + ++ + Sbjct: 60 GWSICREIKE---YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVL 116 Query: 119 QMQ 121 + + Sbjct: 117 KNK 119 >gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 234 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 13 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 72 DVCLELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 Query: 121 QK 122 + Sbjct: 129 YQ 130 >gi|224540428|ref|ZP_03680967.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM 14838] gi|224517942|gb|EEF87047.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM 14838] Length = 1369 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LLV+ VR + + EA + + + + P+ ++ D M LE Sbjct: 1116 VLLVEDDKDVRDYLHKSLE-NDYEIIEAANGVKGYDKAV-QFFPDLVLSDIMMPKRNGLE 1173 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ + V + + G AGA+ +++KPF+ + LR ++ L Q + Sbjct: 1174 LCSMIKNDIRIGHIPVILMTARSMVMHIREGFEAGADDYVIKPFSMDVLRIRIQSLLQSR 1233 Query: 122 KSKDEN 127 + + Sbjct: 1234 EQLKKL 1239 >gi|95931396|ref|ZP_01314106.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132552|gb|EAT14241.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 452 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +R + + + + + V A + +A E E + ++ D M + Sbjct: 6 SILIVDDESAMRHLLQTILEEEEYQVDAAENGKQALEKVEHNHY-DLVLCDVRMPELDGI 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +P + V + E + + GA ++ KPF + + +++ + + Sbjct: 65 GFLSRILPKFPSLTVIMMSAYGSLETALNCMKNGAYDYISKPFRPDEIILTLKKAQERLR 124 Query: 123 SKDENQFL 130 + EN+ L Sbjct: 125 LQRENETL 132 >gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 226 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + ++ G+ VF A + EA + + P+ +++D M + Sbjct: 8 RILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQH-RPHLILLDMMMPVMDGA 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ P D V +L + E+ +AG GA+ +L KP + L ++ + + Sbjct: 67 QTCRAIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAILKR 126 Query: 121 QKS 123 + Sbjct: 127 IDA 129 >gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 226 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF A + EA E+ + +++D + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGA-DVVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRSRSS---VPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] Length = 221 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +RK+ + G+ V EA E + + + +++D M + Sbjct: 1 MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTY-DIVILDIMMPKID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L D + G + +++KPFN + L ++ L Sbjct: 60 GWSVCRKIREE---SQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6] gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus MO6-24/O] gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus CMCP6] gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus MO6-24/O] Length = 239 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 229 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V G+ A + ++ P+ +V+D + G+ Sbjct: 5 RKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDP-PDLVVLDIMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + V + V+ + G GA+ ++ KPF+ + + L + Sbjct: 64 TAVCRELR---RFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|294505928|ref|YP_003569986.1| two-component system sensor histidine kinase/response regulator, hybrid ('one co [Salinibacter ruber M8] gi|294342256|emb|CBH23034.1| two-component system sensor histidine kinase/response regulator, hybrid ('one co [Salinibacter ruber M8] Length = 1392 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + +R R + + V A E + E P+ ++ D M Sbjct: 1143 TVLVVEDNAGMRAYLREQLSGR-WTVRTAADGEEGWAAVQDE-APDLVLSDVMMPTVNGT 1200 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ V L + + G + GA+ ++ KPF+ E LR + Sbjct: 1201 ELCEQIKSAEALRHTPVLLLTARAGTDAEVEGLKTGADDYVTKPFDAEELRQRIANHLAA 1260 Query: 121 QKSKDENQFLD 131 + E + Sbjct: 1261 RDHLRERHRSE 1271 >gi|120610742|ref|YP_970420.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax citrulli AAC00-1] gi|120589206|gb|ABM32646.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax citrulli AAC00-1] Length = 395 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + + L D ++V A+ +A + + P+ +++D M G Sbjct: 39 TVLVVDDTPDNLALMATLLRDH-YLVKVASHGEKALRIAQSDPPPDLILLDIMMPGLDGY 97 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ + +L E G AGA ++ KP + L + + Sbjct: 98 EVCRQLKAHPASRDIPIIFLTARSTPEDERRGLAAGAVDYITKPISPPILLARVHTHLTL 157 Query: 121 QKSKD 125 + + D Sbjct: 158 KATAD 162 >gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames] gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames Ancestor'] gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241] gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str. Sterne] gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L] gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488] gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442] gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193] gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389] gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174] gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis Tsiankovskii-I] gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99] gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97] gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1] gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102] gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC 684] gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271] gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42] gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201] gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3] gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1] gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293] gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI] gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames] gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames Ancestor'] gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241] gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str. Sterne] gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L] gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488] gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193] gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442] gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389] gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174] gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis Tsiankovskii-I] gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99] gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97] gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1] gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102] gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC 684] gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293] gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1] gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3] gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201] gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42] gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271] gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 238 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 65 EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121 >gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132] gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819] gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1] gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus] gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819] gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED133] gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus JKD6159] gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03] gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00] gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus CGS01] gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21189] Length = 233 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V+ A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSK 124 S+ Sbjct: 119 RHYSQ 123 >gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 260 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 36 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 94 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 95 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRAR 151 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 152 LRRSEEPAPEQL 163 >gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 248 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G +A EA ++L P+ +++D + G+ Sbjct: 14 VLVVEDEPGIATILSAYLQRDGLRAHQAHDGLEALRLF-RQLKPDMVLLDIHLPGMDGL- 71 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R + V + D + G R GA+ +++KPF+ + +R + + ++ Sbjct: 72 DLLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRRVQA 131 Query: 124 K 124 + Sbjct: 132 Q 132 >gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275] gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275] Length = 232 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L++D + ++ R G+ + + KE P+ +++D + + Sbjct: 7 KVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKA-KEEKPDLILLDWMLPNISGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ + V L + + + G GA+ ++ KPF+ + L + + + Sbjct: 66 EVLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMRR 125 Query: 121 QKSK--DENQFLDA 132 E++ L A Sbjct: 126 YGMNTGKESEELTA 139 >gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 271 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + ++ G+ V A A +E P+ +V+D + + Sbjct: 45 RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTA-REFRPDAVVLDVMLPDMDGL 103 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 104 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 163 Query: 123 S 123 + Sbjct: 164 A 164 >gi|124515849|gb|EAY57358.1| putative two component transcriptional regulator, winged helix family [Leptospirillum rubarum] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + +H F F V + E L P+ +V+D + G+ Sbjct: 3 RKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLART-LHPDLIVLDLMLPGLDG 61 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ PL + V L + D I G GA+ +++KPFN + L ++ + + Sbjct: 62 LSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILR 121 Query: 120 MQKSKDENQ 128 + + + Sbjct: 122 RTEQEPAQR 130 >gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810] gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD 2210633] gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810] gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329] Length = 239 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + ++ + +++D M + F Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|318060148|ref|ZP_07978871.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|333026707|ref|ZP_08454771.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746559|gb|EGJ77000.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 227 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ VR+ G V A S E +P+ +V+D + G+ Sbjct: 1 MSRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAA-VPDVVVLDWMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R P V + + D ++ G AGA+ +++KP L +R + Sbjct: 60 GLEVCRRLRT-PERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 MD +L+V+ +R + F V EA + E E K P +V+D + G Sbjct: 1 MDKILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PEVVVLDIMLPGVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ ++ + L + ++G GA+ +++KPFN L ++ + Sbjct: 60 GLEVCKTLRQ--EFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117 Query: 119 QMQKSKDE 126 + + E Sbjct: 118 RRVNAVKE 125 >gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 LL+V+ + GF V A ++ + +++D + G Sbjct: 4 TRLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGA-DLILLDLMLPGLSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R + V V L + G GA+ ++ KPF+ L +R + + Sbjct: 63 TEVCRTLRAR---STVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLR 119 Query: 120 MQKSKDE 126 + +E Sbjct: 120 RRVETEE 126 >gi|326796406|ref|YP_004314226.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326547170|gb|ADZ92390.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 237 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + + + L + F + A + E + + + +++D M + Sbjct: 1 MQHILIIDDDIELTDLLKELLSFENFTISVAHNGEEGLDRI--DDTIDMVLLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R++ +D+ V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 G-IDTLRRLRESSDLPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILRR 117 Query: 121 QKSKDENQ 128 + + N+ Sbjct: 118 APNTETNR 125 >gi|317479492|ref|ZP_07938623.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316904312|gb|EFV26135.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1347 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R+ R ++ + + ++ EA KE +PN ++ D M + Sbjct: 1084 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIV-KEYMPNLVISDIMMPEMRG 1141 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + + L + +I G ++GA+ +++KPFN LR + L Sbjct: 1142 DELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLT 1201 Query: 120 MQKSKD 125 + Sbjct: 1202 NRALLR 1207 >gi|270293538|ref|ZP_06199740.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275005|gb|EFA20865.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1347 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R+ R ++ + + ++ EA KE +PN ++ D M + Sbjct: 1084 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIV-KEYMPNLVISDIMMPEMRG 1141 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + + L + +I G ++GA+ +++KPFN LR + L Sbjct: 1142 DELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLT 1201 Query: 120 MQKSKD 125 + Sbjct: 1202 NRALLR 1207 >gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ + G+ V +AT+ E E E + + +++D M + Sbjct: 5 TILVVDDEKEIRELIEIFLKNEGYTVVKATNGVETLEILE-NTIVDLIILDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A + + ++ + L + I G +GA+ ++ KPFN L ++ + K Sbjct: 64 EACL-NIRKNRNMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRRYK 122 >gi|212694999|ref|ZP_03303127.1| hypothetical protein BACDOR_04537 [Bacteroides dorei DSM 17855] gi|212662452|gb|EEB23026.1| hypothetical protein BACDOR_04537 [Bacteroides dorei DSM 17855] Length = 1327 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R +D + V + EA KE P ++ D M + Sbjct: 1067 RILVVEDNDELRTYLIDSLSDI-YNVQACCNGKEAC-IIVKEFWPELILSDIMMPEMGGD 1124 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + + L D ++ G + GA+ ++ KPFN + LR + L Sbjct: 1125 ELCVTIKGDIETSHIPILLLTALGDERNILEGLKVGADDYITKPFNLKILRARIANLLAN 1184 Query: 121 QKSKDE 126 + E Sbjct: 1185 RALLRE 1190 >gi|34557362|ref|NP_907177.1| two-component hybrid protein [Wolinella succinogenes DSM 1740] gi|34483078|emb|CAE10077.1| TWO-COMPONENT HYBRID PROTEIN [Wolinella succinogenes] Length = 401 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L++D + ++ + + G+++ A S + + K P+ +++D M + F Sbjct: 12 ILIIDDTPENLRLLGSVLKEAGYLITMAKSGIQGLQAARKH-QPDLILLDIRMPEMDGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R+ ++ V +L D E ++ G GA ++ KPF+ L +R +++ Sbjct: 71 VLTRLREEENLGEIPVVFLTAHSDEESILRGLSLGAVDYVKKPFSPSELLLRVRNHLELK 130 Query: 122 KSKD----ENQFLD 131 +D + + L Sbjct: 131 FHRDHQNTQKELLA 144 >gi|67925981|ref|ZP_00519251.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67852170|gb|EAM47659.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 174 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LL+D +R + G+ V A + E KEL P ++ D M G Sbjct: 1 MVQILLIDDDSTIRLLLERTLKRQGYDVVCAGNGEEGLVKA-KELHPAMIICDWVMPGVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ V+ +P F L E + G AGA+ FL KP +R Sbjct: 60 GLQVCRQVKSLPDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARIRAGL 119 Query: 119 QMQKSKDEN 127 ++ + + Sbjct: 120 RLHQLSQDL 128 >gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + +V + GF V T+ + +KE P+ +++D + G+ Sbjct: 3 KKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ +L KPF+ L ++ + + Sbjct: 62 EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041] gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041] Length = 229 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A EA N +++D M + Sbjct: 1 MK-ILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q+ +D+ + L + I G +GA+ ++ KPFN + ++ L + Sbjct: 60 GM-EVIKQIRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDEN 127 + + N Sbjct: 119 TQGEVTN 125 >gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 232 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + E + + ++D + G+ Sbjct: 4 MSTILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQIL-SEHIVDVALLDVMLPGID 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GFQVCKAIR--EENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 119 QMQKSKDE 126 + + +E Sbjct: 121 RRIEVHEE 128 >gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 234 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDE 54 M +LLV+ R+ G+ V EA A E E+ P + +++D Sbjct: 1 MTRILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDL 60 Query: 55 SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + E +R ++V V L + I G GA+ ++ KP++ L Sbjct: 61 MLPRLSGTEVCRRIR---RSSNVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVA 117 Query: 113 AMRELPQMQKSKDENQ-FLDA 132 + + + + ++ + L+A Sbjct: 118 RVHAVLRRTREEEPAEPVLEA 138 >gi|225631178|ref|ZP_03787881.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591126|gb|EEH12305.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 460 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + V A EA + K+ P+ +++D M + F Sbjct: 4 KILVVDDVLSNVKLLEARLKAEYYTVSVAHDGEEAIDLVAKQ-QPDIILLDIMMPKMNGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ PL T + + + D + G AGA+ FL KP N L ++ L ++ Sbjct: 63 QVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLTRL 122 Query: 121 QKSKDENQF 129 + DE + Sbjct: 123 KMIIDELRL 131 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + ++ + + EA E + ++ D Sbjct: 158 NILVIDEDVHQAEQIYNILKQRFRSIKILSDPMEAL-KVGIENGYDLIISDMQFSKTDGL 216 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + L + D ++ GAN +L P + L + + Sbjct: 217 RLCSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276 Query: 121 QKSKDENQF 129 ++ +D + Sbjct: 277 KRYQDALRM 285 >gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 225 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + ++ GF+V A + + E E + +++D + G+ + Sbjct: 2 RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAE-ETDYDVIILDVMLPGMDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + ++ V +L D + G GA+ +L+KPF L +R Q Sbjct: 61 TV-IKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCL-RQS 118 Query: 123 SKDENQFL 130 + E++ L Sbjct: 119 TSKESERL 126 >gi|148654494|ref|YP_001274699.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566604|gb|ABQ88749.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 407 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + + + G+ A + +A E + +V+D + ++ Sbjct: 7 ILIVEDDPTIASLVGIVLREAGYRTLHADTAADALRLAETNP-FDLVVLDWMLPDTPGVQ 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + L + + + AG + +L KPF E L +R L +++ Sbjct: 66 ICTALKERAGRRFLPILMLTAKGELSDRVTALDAGVDDYLSKPFYIEELMARVRALLRIR 125 Query: 122 KSKDE 126 +++E Sbjct: 126 AAENE 130 >gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R+ G+ V EA EA P+ +++D + + Sbjct: 6 KTILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHE-PDVILLDLGLPDMDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +P+ V L + + GA+ +L KPF+ L +R + Sbjct: 65 -EELLRALPMWVRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVCLRR 122 >gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 223 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 115 Query: 119 QMQKSKD 125 + K ++ Sbjct: 116 RRVKKEE 122 >gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ ++ R+ G+ V A+ + E P+ L++D + + Sbjct: 1 MSTILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAE-QPDLLILDVMLPKLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ T++ + L D IAG GA+ +++KPF+ L +R + Sbjct: 60 GFSVCRILRRE---TNIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAIL 116 Query: 119 QMQKSKD---ENQFLDA 132 + + E + L A Sbjct: 117 RRTDRQPTGVERELLTA 133 >gi|78486516|ref|YP_392441.1| response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] gi|78364802|gb|ABB42767.1| response regulator receiver modulated metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] Length = 348 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD +V L + G+ AT EA + E + +++D M + Sbjct: 7 ILIVDDISENIQVAMSLLREEGYQFSFATDGEEALRLAD-ENDFDLILLDIMMPRMDGYE 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ + +L +VD + + G + GA ++ KPF+ E L ++ ++ Sbjct: 66 TCRRLKANARTQDIPIIFLTAKVDIDAISKGFKLGAVDYITKPFHGEELIARVKTHLELY 125 Query: 122 KSKDENQF 129 SK + Sbjct: 126 ASKQLLKQ 133 >gi|27366537|ref|NP_762064.1| response regulator [Vibrio vulnificus CMCP6] gi|27358103|gb|AAO07054.1|AE016808_74 Response regulator [Vibrio vulnificus CMCP6] Length = 378 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + R + L + + V AT+ +A C+ LP+ +++D M + Sbjct: 7 TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSH-LPDIVLLDIMMPEMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L + E G GA ++LKP + L +R ++ Sbjct: 65 EVCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHLKL 124 Query: 121 QKSKDEN 127 + + +E Sbjct: 125 KHAMEEL 131 >gi|159902683|ref|YP_001550027.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887859|gb|ABX08073.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 258 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M S+LL++ +R++ GF V A + + P+ +++D + Sbjct: 1 MKPSILLIEDDKDMRELVAGHLEHCGFDVQRAEDGIRG-QALAMQYTPDLILLDLMLPKV 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L +R+ + + L + + G +GA+ +L KPF+ E L+ ++ L Sbjct: 60 DGLTLCQRLRRDERTAGIPILMLTALGGLKDKLTGFNSGADDYLTKPFDLEELQVRVKAL 119 Query: 118 PQM 120 + Sbjct: 120 LRR 122 >gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 234 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + + + V + +A E +K L+ +++++D + + Sbjct: 3 KTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLV-DFVIMDLMLPQLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + + + L + I G GA+ ++ KPF+ + L ++ + + Sbjct: 62 IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRR 120 >gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] Length = 243 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + LV+ + + + + D G+ + A E EK + + +++D + GV Sbjct: 8 KKIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKH-VWDAVILDLMLPGVDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 67 LEICRRIRQMSFY--LPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFR 124 Query: 120 MQKSKDENQFLDA 132 Q++ +N ++A Sbjct: 125 RQEAMSQNLRMEA 137 >gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 225 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family [Asticcacaulis excentricus CB 48] gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family [Asticcacaulis excentricus CB 48] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +++ + + + ++ G+ V A EA E P+ LV D M +E Sbjct: 7 IIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEAL-MMINERQPDLLVCDWMMPKVSGIE 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R ++ + L + I G GA+ +++KPF+ L +R + + Sbjct: 66 VTRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLRRI 125 Query: 122 K 122 + Sbjct: 126 R 126 >gi|197104776|ref|YP_002130153.1| stalked-cell differentiation controlling protein [Phenylobacterium zucineum HLK1] gi|196478196|gb|ACG77724.1| stalked-cell differentiation controlling protein [Phenylobacterium zucineum HLK1] Length = 454 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + V A+ A E P+ +++D M G+ F Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVLTASDGPTALAMAAAE-RPDIVLLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P V V + +AG AGA+ FL KP + L +R L ++ Sbjct: 63 SVCRRLKDDPETRHVPVVLVTALDGRADRVAGLEAGADDFLTKPIDDVMLLARVRSLTRL 122 Query: 121 QKSKDENQFLDA 132 + DE + +A Sbjct: 123 KAVIDELREREA 134 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 37/120 (30%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D + + T +A + + L F Sbjct: 155 RILIIDDNVRQAQRVCTELAIE-HRPVIETDYDKALLSARGPVDLAIVNAGAKAFDGLRF 213 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A +R + + ++ + ++++ G N L +P + L + + ++ Sbjct: 214 CAQLRSDEATRGLPILAVVDFDERQRVVKALEIGVNDILARPIDPGELAARAKTQIRRKR 273 >gi|254412519|ref|ZP_05026293.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180829|gb|EDX75819.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 381 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L VD + + + + G+ + A EK P+ +++D M + Sbjct: 10 RILAVDDAPDNLFLMQTILETEGYDLSLVEDGYSALAIVEKSP-PDLILLDVMMPQMDGY 68 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + + + I G AGA+ F+ KP + L +R L ++ Sbjct: 69 EVTRRIRQNSSLPFIPILLITAY-EQSSAIEGLDAGADDFIRKPVDVGELLARVRSLLRL 127 Query: 121 QKSKDENQFLD 131 + S DE L Sbjct: 128 KHSIDEQVRLA 138 >gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 1145 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD I + RHL G+ + ++ +A +E + + +++D M + Sbjct: 738 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPV-DLILLDVMMPTLSGFD 796 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + V L + + G AGAN +L+KPF +E L ++ L + Sbjct: 797 VCRRLREQHPKDKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVKALLEAS 856 Query: 122 KSKD---ENQFLD 131 + EN+ L Sbjct: 857 AGRASLVENRLLK 869 >gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 253 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR+V G+ V A EA E E P+ +V+D + + F Sbjct: 12 TILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNES-PDLVVLDVMLPKLDGF 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 71 AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRR 127 >gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 1/116 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + +V + G+ A + E +E + +++D + + Sbjct: 4 RILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQY-REQQWDLILLDIMLPEMSGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R + V L + + E + G GAN ++ KPF E L +R Sbjct: 63 DVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118 >gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily) [Arthrospira platensis NIES-39] Length = 227 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V +A +A + + L++D + L Sbjct: 2 RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQA-GTLAQNHHYDLLILDWMLPHQSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A +R + +L + + + G AGA+ +L+KPF L +R L + Sbjct: 61 EICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|265765934|ref|ZP_06093975.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] gi|263253602|gb|EEZ25067.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] Length = 1330 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ + +R H +D + + ++ EA KE +P ++ D M + Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E A ++ + + + L D + ++ G + GA+ +++KPFN L+ + L Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLL 1185 >gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + ++ + +++D M + F Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 233 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M+S+L++D + + + A E +K + +++D M + Sbjct: 1 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +++ V L + D + ++G R GA+ +L KPF+ L + L + Sbjct: 61 DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|146342170|ref|YP_001207218.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194976|emb|CAL79001.1| putative sensor histidine kinase with multiple PAS and a response regulator receiver domain (modular protein) [Bradyrhizobium sp. ORS278] Length = 1319 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 12/140 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L D + +R L D + V A E + P+ ++ D M Sbjct: 666 RVVLADDNSDMRDYVCRLLGD-DYEVEAVADGVAALETVRR-RRPDLVLTDVMMPRLDGF 723 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE---L 117 + +R P D+ V L E + G AGA+ +L KPF+ L +R L Sbjct: 724 GLLKALRSDPQRRDIPVVILSARAGEEAKVEGLDAGASDYLSKPFSARELLARVRVNIDL 783 Query: 118 PQMQKS-----KDENQFLDA 132 +++++ +D N+ L+A Sbjct: 784 ARVRRAAETTLRDLNERLEA 803 Score = 94.1 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLE 61 ++L+V+ + + + L D G+ A S +A E + ++ D M G+ Sbjct: 1193 NVLVVEDNPEIGEFSTQLLEDLGYRTVLARSGLDALRLIEDNPDGFDLVLSDVVMPGMDG 1252 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + G R G + + KP++ + L +R++ + Sbjct: 1253 VTLGQEIRRRLPTIPIVLNSGYSDV--LADGDRHGFS-LIHKPYSVDELSRVLRQVMAAR 1309 >gi|186681324|ref|YP_001864520.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186463776|gb|ACC79577.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 379 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD S + + + + G+ + A + A + + +++D M + Sbjct: 10 KILVVDDSPDNVFLIKTILEEEGYTISTAENGISALAELKASPC-DLVLLDLMMPDMDGY 68 Query: 62 -FIAHVRQMPLGTD-VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 H+R + + + + G GA+ F+ KP + L +R L + Sbjct: 69 EVTKHIRGDMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 127 Query: 120 MQKSKDENQFLD 131 ++ S DE + Sbjct: 128 LKHSMDERDEIA 139 >gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + L GF V A A EK + +++D + G+ Sbjct: 1 MITILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKND-IDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++ V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKRLRKVSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium] Length = 232 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+ + + + G+ V + EA + + + +++D M Sbjct: 1 MRRISILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQS-IDLIILDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + VR ++ + +L + + G G + ++ KPF L + Sbjct: 60 MDGYEVTRQVRAQ---YNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149] gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149] Length = 311 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 11/126 (8%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M + +L+ D +R + R L G+ V A + EA E + ++D +M Sbjct: 80 MKNGKICILIADDEKEIRDILRLLLTGEGYAVCTAENGKEALVLASAE--VDLYLLDVNM 137 Query: 57 EGVLEFIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + F+A +R+ + + +L + G AGA+ +++KPF+ L + Sbjct: 138 PELSGFMAGSEIRKQF---NAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRV 194 Query: 115 RELPQM 120 + + + Sbjct: 195 KAILRR 200 >gi|75910334|ref|YP_324630.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75704059|gb|ABA23735.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 440 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + KV + G+ AT A E E P+ +++D M G+ F Sbjct: 11 TILIVDDNPTNLKVLSDAISSLGWEALIATDGESAIEEAEYA-QPDIILLDVMMPGIDGF 69 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + V +L D + G G ++ KPFN + + ++ ++ Sbjct: 70 QTCTELKKKSSTKHIPVIFLTALTDQFDKVLGLVTGGVDYITKPFNLDEVLARIQVHLKL 129 Query: 121 ----QKSKDENQFLDAI 133 ++ + +NQ LD + Sbjct: 130 SFLTKELQIKNQELDKL 146 >gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 232 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R+ + + G V+EA +A +E + +++D M + Sbjct: 4 NNILVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDAL-MILQEEEIHLILMDIMMPKMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 63 IKTTFKIREK-KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 120 >gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8] gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8] Length = 220 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + G+ V A A ++ + +V+D + + Sbjct: 2 RILVVEDEPTLATQLADALRQAGYTVDTAADGGTA-QYMGAVETYDVVVLDLGLPVMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + V L ++ + +AG AGA+ +L KPF+ E L +R L + Sbjct: 61 TVLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120 Query: 123 SKDENQ 128 S Q Sbjct: 121 SHASAQ 126 >gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + + ++ + +++D M + F Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 72 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKR 128 Query: 121 QK 122 + Sbjct: 129 YQ 130 >gi|189466658|ref|ZP_03015443.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM 17393] gi|189434922|gb|EDV03907.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM 17393] Length = 1369 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LLV+ VR + + EA + + + + P+ ++ D M LE Sbjct: 1116 VLLVEDDKDVRDYLHKSLE-NDYEIIEAANGIKGYDKAV-QFFPDLVLSDIMMPKRNGLE 1173 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ + V + + G AGA+ +++KPF+ + LR ++ L Q + Sbjct: 1174 LCSMIKNDIRIGHIPVILMTARSMVMHIREGFEAGADDYVIKPFSMDVLRIRIQSLLQSR 1233 Query: 122 KSKDEN 127 + + Sbjct: 1234 EQLKKL 1239 >gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M L+VD ++ K + G+ V A EA + KE + +++D + Sbjct: 1 MK-ALVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKA-KETEYDIVLLDLMLPILT 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +D+ + L + D I G GA+ ++ KPFN ++ ++ + Sbjct: 59 GYEVCQQIRE---FSDMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAII 115 Query: 119 QMQKSKD 125 + K K Sbjct: 116 RRNKRKA 122 >gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus] Length = 239 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V+ A +A + +E P+ +++D + G Sbjct: 9 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 67 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 68 MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 124 Query: 120 MQKSK 124 S+ Sbjct: 125 RHYSQ 129 >gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 225 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+V + G V EA +A E +E + +V+D M + Sbjct: 1 MFKILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKA-REQDFDVIVMDIMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A+ +++ ++ V L + + G G + +++KPF+ + L + + Sbjct: 60 GFSAY-KEIKKTKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTR 118 Query: 121 QKSKDENQFLD 131 K ++N+ ++ Sbjct: 119 NKKLNDNRVME 129 >gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 200 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + V G+ V EA ++ E + +++D M V Sbjct: 1 MK-ILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEY-DLVILDIMMPKVD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G V L + + G GA+ +++KPF+ L +R + + Sbjct: 59 GFEVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRR 118 Query: 121 QKSKDENQF 129 + N+ Sbjct: 119 KYGNSSNKL 127 >gi|212692265|ref|ZP_03300393.1| hypothetical protein BACDOR_01761 [Bacteroides dorei DSM 17855] gi|212665142|gb|EEB25714.1| hypothetical protein BACDOR_01761 [Bacteroides dorei DSM 17855] Length = 1357 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + +R LF + V+EA + E + +P+ ++ D M Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGVDVAIS-KIPDLIISDIMMPVKDG 1162 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ P + + L + + ++ ++ G + +++KPFN E L+ +R L Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1223 QRERLKR 1229 >gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 227 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + GF V A A K+ P+ +++D M G+ F Sbjct: 8 RVLLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLM-KQFQPHVVILDVMMPGMDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++M +V V L + + + G GA+ +++KPF+ E L + + Sbjct: 67 EVCRMLKKME---NVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVRN 123 Query: 121 Q 121 Q Sbjct: 124 Q 124 >gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC] gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC] Length = 233 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ V + G+ V A EA E +KE P +++D + + Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKED-PTLILLDWMLPVYDGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +DV + L + + + G + ++ KPF E L +R + + Sbjct: 66 TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122 Query: 121 QKSKDEN 127 K E Sbjct: 123 LKKTQEQ 129 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + ++ + G+ A + + P+ +++D + G+ Sbjct: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQ-RPDLILLDIMLPGMDGWE 76 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK-PFNRETLRFAMRELPQM 120 +R +DV V L + E + G GA+ ++ K PF+ + ++ + + Sbjct: 77 ICRQLR---TFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRR 133 Query: 121 QKSKDE 126 + Sbjct: 134 NALVQQ 139 >gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 MD +L+++ +R G+ V EA + EA E E + ++D + Sbjct: 1 MDKILILEDEIGIRSFVSINLKREGYEVIEAGTGAEAIEKLSTEKNISLALLDIMLPDTS 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E ++R+ ++ V L + + I G ++GA+ +++KPF+ + L ++ L Sbjct: 61 GIEICKYIRK--EFDNMGVIMLTAKSQEDDKIEGFQSGADDYIVKPFSIKELLMRVQALI 118 Query: 119 QMQK 122 + K Sbjct: 119 RRVK 122 >gi|261418620|ref|YP_003252302.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765436|ref|YP_004130937.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375077|gb|ACX77820.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110302|gb|ADU92794.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 232 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + V S EA + + +++D MEG+ Sbjct: 4 KKILVVDDDEDICLTIKQYLELHHYQVETVHSGAEALKMI--SGDVDLIILDIMMEGIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R D + ++ + E + G + ++ KPF+ + L+ + + Sbjct: 62 MELCRMIRDR---VDCPILFVSAKTLEEDKVQALSIGGDDYITKPFSLKELKARIDSHLR 118 Query: 120 MQKSKDENQF 129 ++ N+ Sbjct: 119 REERIRSNER 128 >gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 225 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGV-DLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7] gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7] Length = 233 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + F VF A++ EA E E + PN +V+D + + Sbjct: 1 MK-ILIVDDEPKILDIVEAYLTIKRFQVFRASNGIEALEKFEL-VQPNLIVLDLMLPDIS 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +DV + L + ++ G + GA+ +++KPF+ + L + + Sbjct: 59 GTVICQKIRK---TSDVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVL 115 Query: 119 QMQKS 123 + S Sbjct: 116 RRSDS 120 >gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 435 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + +V + + G+ + +A + A + + P+ +++D M + Sbjct: 13 ILIVDDTPNNLRVLSSILQEQGYEIRKAVNGKMAIRSVQADP-PDLVLLDIKMPDLDGYQ 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ + D+ V +L D + + G ++ KPF E + ++ ++ Sbjct: 72 VCSQLKAIEATRDIPVIFLSALDDVFNKVLAFQVGGVDYITKPFQVEEVLVRVKTHLTLR 131 Query: 122 KSKDENQF 129 + + + Sbjct: 132 RLTKDLEL 139 >gi|114707398|ref|ZP_01440295.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Fulvimarina pelagi HTCC2506] gi|114537279|gb|EAU40406.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Fulvimarina pelagi HTCC2506] Length = 454 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD S I K+ F V +A++ EA C E L + ++ D M Sbjct: 4 RILIVDDSAINLKLLEARLTAEYFDVVQASNGEEALAICRSEPL-DLVLSDVMMPEVDGF 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P T + V + + G AGA+ FL KP L +R L ++ Sbjct: 63 ELCRALKSDPRTTHLPVVLITALDQPSDRVRGLEAGADDFLTKPVRDLPLFSRVRSLTRL 122 Query: 121 QKSKDENQFLD 131 ++ DE + Sbjct: 123 KQMTDELRRRA 133 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 5/120 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +++V ++ G V E A +K V+D + Sbjct: 156 IVVVSDHARLQARIARSLQTIG-SVREFADYDTAFAAVQK-RQVMLTVVDLVGGNGTDPI 213 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F+A R + + + D GA ++ +P + L R Sbjct: 214 RFLARCRASEKSRGMPIIAITAADDDRTAAKALEIGAYDYVQRPVDCNELVARSRTQLAR 273 >gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122] gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781] gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719] gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635] gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299] gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115] gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300] gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224] gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948] gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937] gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30] gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3] gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796] gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122] gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781] gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719] gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635] gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299] gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115] gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300] gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224] gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948] gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937] gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3] gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30] gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus TW20] gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796] gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11] gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46] gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus T0131] gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21172] gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21193] Length = 235 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V+ A +A + +E P+ +++D + G Sbjct: 5 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 64 MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 120 Query: 120 MQKSK 124 S+ Sbjct: 121 RHYSQ 125 >gi|28899632|ref|NP_799237.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD 2210633] gi|260895491|ref|ZP_05903987.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus Peru-466] gi|28807884|dbj|BAC61121.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD 2210633] gi|308088063|gb|EFO37758.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus Peru-466] gi|328472243|gb|EGF43113.1| transcriptional regulator CpxR [Vibrio parahaemolyticus 10329] Length = 229 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + + + + + GF V EA + +++D M + Sbjct: 1 MANILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAI--NSDIDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKDEN 127 + +N Sbjct: 118 TSNTQKN 124 >gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125] gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125] Length = 222 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + +V + G+ A S + E + + +++D + + Sbjct: 1 MARILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAW-DLVLLDVMLPELS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L ++G GAN ++ KPF E L +R + Sbjct: 60 GLEVLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRT 119 Query: 121 QKSKDENQ 128 ++++ + Sbjct: 120 VQTRERVE 127 >gi|148262168|ref|YP_001228874.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146395668|gb|ABQ24301.1| two component, sigma-54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 452 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D +R+V + + G+ V A+S E + + P+ ++ D M G+ Sbjct: 1 MKAKILVIDDDSSLRRVLEYNLQEEGYEVQAASSGEEGL-YLFGQSRPSLVITDMKMSGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + V + + + +AGA ++ KPFNR+ L+ +R+ Q Sbjct: 60 DGLMVLKSVKERSPETLVIIITAFGTVDVAVEAMKAGAYDYITKPFNRDALKLTVRKALQ 119 Query: 120 MQKSKDENQFLD 131 +EN+ L Sbjct: 120 FTGLAEENKRLK 131 >gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2] Length = 240 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + +V+D + G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQ-MDRLLERENFHLMVLDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQM G ++ + L + D I G GA+ +L KPFN L + + + Sbjct: 66 SICRRLRQM--GNELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123 Query: 121 QKSKD 125 + S+ Sbjct: 124 RNSEA 128 >gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] Length = 238 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 65/138 (47%), Gaps = 9/138 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + ++ ++ + GF +A + +A + +E + + +++D + G+ Sbjct: 3 KTILLVDDEAHILELLKYTMENEGFSTLQAETGEQALKLLGRERV-DAVILDLMLPGIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++R P ++ V L + + + G GA+ +L KPF L ++ + + Sbjct: 62 LEVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVLR 121 Query: 120 MQK------SKDENQFLD 131 + +K +N+FL Sbjct: 122 RAEAPGEPGAKKDNRFLK 139 >gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 237 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD + + + G+ V A EA + E+E P+ +++D + Sbjct: 3 KTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEE-QPDLMLLDIMLPKRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573] gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603] gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223] gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451] gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385] gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603] gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573] gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451] gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223] gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385] Length = 240 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|222055651|ref|YP_002538013.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221564940|gb|ACM20912.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 452 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 2/133 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D + +R+V + + G+ V A+S E F + P+ ++ D M G+ Sbjct: 1 MKGKILVIDDDNSLRRVLEYNLKEEGYEVQAASSGEEGL-FLFGQSQPDLVITDMKMSGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + V + + +AGA ++ KPFNR+ L+ + + Q Sbjct: 60 DGLMVLKSIKERSPETLVIIITAFGTVNIAVEAMKAGAYDYITKPFNRDELKLIVLKALQ 119 Query: 120 MQKSKDENQFLDA 132 +EN+ L + Sbjct: 120 FNGLAEENKRLKS 132 >gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 233 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ V + G+ V A EA E +KE P +++D + + Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKED-PTLILLDWMLPVYDGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +DV + L + + + G + ++ KPF E L +R + + Sbjct: 66 TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122 Query: 121 QKSKDEN 127 K E Sbjct: 123 LKKTQEQ 129 >gi|296272695|ref|YP_003655326.1| response regulator receiver modulated diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296096869|gb|ADG92819.1| response regulator receiver modulated diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 290 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L+VD ++I K+ L D + + A A E P+ +++D M + Sbjct: 1 METILVVDDTNINIKILVELLGDK-YDIIVAIGGESAINIASSE-QPDLILLDIMMPVMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++Q P D+ + +L + D + + G + ++LKPF + L ++ Sbjct: 59 GFEVCRRLKQNPKTNDIPIIFLTAKTDEDSIERAYEMGGSDYILKPFKPKELMARVKTHL 118 Query: 119 QMQKSKDENQFLDA 132 ++Q ++L + Sbjct: 119 KIQNLIKNLEYLSS 132 >gi|209523400|ref|ZP_03271955.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328] gi|209496142|gb|EDZ96442.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328] Length = 438 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L VD + L G+ A S A E P+ +++D M + F Sbjct: 8 ILWVDDEPANLVLLEDLLMAEGYDTTLAESGPRAIELA-TNNPPDLVLLDIMMPDMNGFE 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + +L D E + G + ++ KP N + L + + ++ Sbjct: 67 VCDRLREHDILQTTPIIFLTALDDEESRLKGLEKMGDDYITKPINIKLLLAKIHNIIKLH 126 Query: 122 KSKD 125 K ++ Sbjct: 127 KMRN 130 >gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] Length = 230 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + GF V A + + +++D + GV Sbjct: 3 KRILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLA-VEFDLIILDLMLPGVDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 62 FEICRQIRGQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 118 Query: 120 MQK 122 + Sbjct: 119 RYE 121 >gi|162454291|ref|YP_001616658.1| response regulator [Sorangium cellulosum 'So ce 56'] gi|161164873|emb|CAN96178.1| response regulator [Sorangium cellulosum 'So ce 56'] Length = 464 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R L G+ V A EA E E P+ ++ D M + Sbjct: 10 RVLVVDDEASARSGLEKLLRQEGYTVDAAADGVEAVEVA-AERPPDVVITDLKMPRMDGV 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V + D + RAGA +L KP + + L + + Sbjct: 69 ALLGKLREQDPALPVIVVTAFGDVTSAVLAMRAGAEDYLTKPVDFDALLLTLERALERSA 128 Query: 123 SKDENQFL 130 + E + L Sbjct: 129 LRVEAENL 136 >gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 269 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A A + +E P+ +V+D + + Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTA-REFRPDAVVLDMMLPDMDGL 102 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 103 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 162 Query: 123 SKDE 126 + D Sbjct: 163 AADR 166 >gi|71906611|ref|YP_284198.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846232|gb|AAZ45728.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 994 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + I + + G A A + E P+ +++D M + Sbjct: 24 ILVVDDTPINLETLAEMVRHAGANARVANCGATALRYARLEPRPDLILLDIMMPDMDGHA 83 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +A +R+MP D+ V ++ D + G R GA ++ KP L +R +++ Sbjct: 84 VLAELRRMPETRDIPVIFVTALDDQSEEERGIREGAADYVSKPVKMSVLIARIRAHLEVR 143 Query: 122 KSK 124 +++ Sbjct: 144 RAQ 146 Score = 99.5 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 2/132 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLLVD V L G+ + ATS EA + K+ + ++ D+ M + Sbjct: 860 QTLLLVDDEPNVLSSLTRLLRREGYAILTATSPTEAFDLLAKQPV-QVVISDQRMPDMSG 918 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGA-NSFLLKPFNRETLRFAMRELPQM 120 R L L D + + GA FL KP++ + LR +RE ++ Sbjct: 919 TEFLSRVRQLYPATIRLVLTGYTDLQSVTDAINRGAIYKFLTKPWDDDQLREQIREAFRV 978 Query: 121 QKSKDENQFLDA 132 E F+ A Sbjct: 979 VHLNQEQNFIPA 990 >gi|332982072|ref|YP_004463513.1| Fis family two component sigma-54 specific transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699750|gb|AEE96691.1| two component, sigma54 specific, transcriptional regulator, Fis family [Mahella australiensis 50-1 BON] Length = 449 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R V + A E + +K + +++D + + Sbjct: 4 RILIIDDEERMRWVLCKALEQESYEAEAAGDGIEGLKMLDKHS-IDLVLLDMRLPIMDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R L + V + E +A +AGA ++ KPF+ + L +++ + + Sbjct: 63 EVLKRIKELYPSLPVIIITAYGSIEMAVAAVKAGATDYITKPFDIDELVIQIKKALDVHR 122 Query: 123 SKDENQFLDA 132 DE +FL + Sbjct: 123 LVDEVEFLRS 132 >gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD VR+V V EA +A E + +V+D + G+ Sbjct: 1 MARVLVVDDDLTVREVLASYLRAGSHDVVEAGDGEQAL-RAMSERPADIVVLDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G +V + L I G GA+ ++ KPF+ L + + + Sbjct: 60 GLEVCRRLRQAG-EVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKR 118 Query: 121 QKSKDE 126 E Sbjct: 119 TGHSGE 124 >gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+ D + + G+ V +A+ EA E + + LV+D M + Sbjct: 5 SILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQS-IDLLVLDIMMPKMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + +L + + G GA+ ++ KPF L + + Sbjct: 64 EVTRRIREQ---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRR 120 >gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 233 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD + K+ + + G+ + A EA E +E + +V+D M + Sbjct: 5 TILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNRE-QIDVMVLDVMMPNMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + L + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 EACMKIRE-TEHFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRRVR 122 >gi|304408275|ref|ZP_07389923.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342744|gb|EFM08590.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 + +VD +R++ + G+ S EA E + P+ V+D + G+ Sbjct: 8 IAVVDDDEAIRQLVEAYLHKEGYRTVGLGSGEEAWELWKASP-PDLWVLDLMLPGMDGYE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V + + I G G++ +++KPF+ L ++ Q Q Sbjct: 67 LCRRIRNEAE---VPIIMISARDTEVDKILGLELGSDDYMVKPFSPRELVARVKRQLQRQ 123 Query: 122 K 122 + Sbjct: 124 Q 124 >gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + +D ++V A EA E + + +++D + + Sbjct: 1 MK-ILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDV-FSYDLILLDVMLPKMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + + E ++G GA+ +L+KPF + L +R L + Sbjct: 59 GITLCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRR 118 >gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT] gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT] Length = 222 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +RK+ + F GF V EA + + KE + +++D + + Sbjct: 1 MQ-ILIIEDEERMRKLLKDYFKRSGFSVLEAEDGVKGLKVF-KENSVDLVILDIMIPCLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ V + L + + E + G G + ++ KPF+ + L ++ L Sbjct: 59 GWTVCKSIRQNSK---VPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALL 115 Query: 119 QMQKSKDEN 127 + +++ Sbjct: 116 KRSGIEEKE 124 >gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 233 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ G+ V +A KE LP+ +V+D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRM-KERLPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKD 125 + Sbjct: 123 AAPER 127 >gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B] gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 241 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLVEQGFQVRAAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G+ + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQTGSPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 123 SK 124 + Sbjct: 126 QE 127 >gi|329961611|ref|ZP_08299670.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531603|gb|EGF58437.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1318 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 5/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLL + +R+ + + + V +A E +E+ P+ ++ D M E Sbjct: 1076 LLLAEDDPDMREYLTNSLSSE-YKVVGVPDGGKALEMA-REINPDIIISDVVMPVLEGDE 1133 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 ++ + + V L + E +I G AGAN +++KPF+ L+ +R + Q Sbjct: 1134 LCRILKSSVDTSHIPVILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1193 Query: 121 QKSKD 125 Q+ +D Sbjct: 1194 QRLRD 1198 >gi|265750340|ref|ZP_06086403.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263237236|gb|EEZ22686.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1327 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R +D + V + EA KE P ++ D M + Sbjct: 1067 RILVVEDNDELRTYLIDSLSDI-YNVQACCNGKEAC-IIVKEFWPELILSDIMMPEMGGD 1124 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + + L D ++ G + GA+ ++ KPFN + LR + L Sbjct: 1125 ELCVTIKGDIETSHIPILLLTALGDERNILEGLKVGADDYITKPFNLKILRARIANLLAN 1184 Query: 121 QKSKDE 126 + E Sbjct: 1185 RALLRE 1190 >gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264] gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264] Length = 224 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ + ++ GF VF A E + + +++D + + Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSY-DLILLDVMLPKM 59 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R+ G+ V + L + + I G GA+ ++ KPF+ E L ++ L Sbjct: 60 SGMEVCKRIRE---GSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKAL 116 Query: 118 PQMQK 122 + K Sbjct: 117 LRRTK 121 >gi|237727059|ref|ZP_04557540.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229433915|gb|EEO43992.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1327 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R +D + V + EA KE P ++ D M + Sbjct: 1067 RILVVEDNDELRTYLIDSLSDI-YNVQACCNGKEAC-IIVKEFWPELILSDIMMPEMGGD 1124 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + + L D ++ G + GA+ ++ KPFN + LR + L Sbjct: 1125 ELCVTIKGDIETSHIPILLLTALGDERNILEGLKVGADDYITKPFNLKILRARIANLLAN 1184 Query: 121 QKSKDE 126 + E Sbjct: 1185 RALLRE 1190 >gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 242 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD +R + D GF + A + E + + P+ ++ D M Sbjct: 16 KILLVDDEPGLRTAVKTFLEDEGFEISIAVDGEDGWEKAQT-IFPDLIISDIMMPRSNGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V +L + G AG + ++ KPF+ + L ++ + Sbjct: 75 ALLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYIAKPFDPDELSARVKNVINR 134 Query: 121 Q-KSKDENQFLDAI 133 Q + E I Sbjct: 135 QERLLKEAARFADI 148 >gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 226 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ +L G+ V + EA E +K + +++D + G Sbjct: 1 MTRILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGA-DLVLLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R V V L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRTRSS---VPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 230 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A EA +++D M + Sbjct: 1 MK-ILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTNPDIALMILDVMMPNMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + + L + I G GA+ ++ KPFN + +R L + Sbjct: 60 GL-DVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 ++ ++Q Sbjct: 119 AENAVQDQ 126 >gi|332285264|ref|YP_004417175.1| two component response regulator [Pusillimonas sp. T7-7] gi|330429217|gb|AEC20551.1| two component response regulator [Pusillimonas sp. T7-7] Length = 233 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ N + A + + P+ +V+D M Sbjct: 7 KVLVVDDDPALRQLLADYLNRHNYDTLLAPDASD-LPARIQRYSPDLIVLDRMMPDGDGA 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R G D+ V L + + G AGA+ +L KPF+ L + + + +K Sbjct: 66 EACRRLRQQGEDIPVILLTARDETVDRVIGLEAGADDYLGKPFDPRELLARIEAVLRRKK 125 >gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101] Length = 234 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+V+ +R+ GF V AT+ A + ++ + +V+D + G Sbjct: 10 MARLLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSY-DLVVLDLMLPGIN 68 Query: 59 VLEFIAHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 L+ +RQ G+ + + + G GA+ +L+KPF L R L Sbjct: 69 GLDLCRQLRQ---GSTPPLILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRAL 125 Query: 118 PQMQK 122 + Q+ Sbjct: 126 LRRQR 130 >gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590] gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590] Length = 238 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V+ A +A + +E P+ +++D + G Sbjct: 8 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 66 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 67 MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 123 Query: 120 MQKSKDENQ 128 S+ + Sbjct: 124 RHYSQPAQE 132 >gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 253 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + +V D G+ A+ E E P+ +++D + Sbjct: 18 TILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAE-RPDLVILDVMLPQLSGF 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R G V +L + E +AG RAG + +L KPF+ + L + Sbjct: 77 DLCRTRRT--EGDATPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRR 134 Query: 121 Q 121 + Sbjct: 135 R 135 >gi|255691944|ref|ZP_05415619.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260622353|gb|EEX45224.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1348 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLLV+ + + + + + + V A + EA + K+ + ++ D M + Sbjct: 1102 LLLVEDNEELLYLMEKILSRQ-YHVLVAKNGLEALDII-KDNEIDIIISDVMMPEMDGLE 1159 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + E I AGA+ ++ KPF + L + + Sbjct: 1160 LCRNIKSNLETSHIPVILLTAKNTAEDRIECYNAGADGYISKPFELKILEARINNFIIYK 1219 Query: 122 KSKDEN 127 KSK E Sbjct: 1220 KSKQEE 1225 >gi|224537550|ref|ZP_03678089.1| hypothetical protein BACCELL_02429 [Bacteroides cellulosilyticus DSM 14838] gi|224520863|gb|EEF89968.1| hypothetical protein BACCELL_02429 [Bacteroides cellulosilyticus DSM 14838] Length = 1345 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++LLV+ R L + + V EA E E P+ ++ D M L Sbjct: 1095 TILLVEDDKEFRHYMFELLSKK-YNVLEAGDGEEG-ERIATTKFPDLIISDIMMPKVDGL 1152 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L E + G +GA+ ++ KPFN + L +++L Sbjct: 1153 ELCKRIKSNIQVSHIPVILLTARSTDESKLFGYESGADEYISKPFNLDILLLRIQKLINE 1212 Query: 121 QKSKDE 126 +K++ + Sbjct: 1213 EKARQK 1218 >gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 228 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V + G+ V A+E PN +V+D + G+ Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFV-NFSPNLVVLDMILPGIDGM 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + ++V V L + + + GA+ +++KPF + L ++ + + Sbjct: 66 -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 123 SKDEN 127 ++ + Sbjct: 125 GEEPD 129 >gi|260062752|ref|YP_003195832.1| putative two-component system sensor kinase/response regulator fusion protein [Robiginitalea biformata HTCC2501] gi|88784320|gb|EAR15490.1| putative two-component system sensor kinase/response regulator fusion protein [Robiginitalea biformata HTCC2501] Length = 941 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLV+ + +R+ D + A E + P+ ++ D M + Sbjct: 696 VLLVEDNPDMRQFICDGLIDA-YRTLTARDGEEGLKLAISRN-PDLVITDLMMPRMDGVE 753 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 ++ + + V L E + G GA+ +L KPF+ LR + L + Sbjct: 754 MTEKLKTRIETSHIPVVMLTARAGMENKLEGLETGADDYLTKPFDTRELRVRVANLIRQR 813 Query: 121 QKSKD 125 Q+ +D Sbjct: 814 QRLRD 818 >gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio orientalis CIP 102891] gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio orientalis CIP 102891] Length = 230 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + + + GF V EA + E + +++D M + Sbjct: 1 MPHILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALL--NDQIDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GM-ETLKRLRETWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILRR 117 Query: 121 QKS 123 +S Sbjct: 118 TQS 120 >gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 233 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + ++ + GF + A E + P+ +++D + G+ + Sbjct: 8 TILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRST-PDLVLLDLMLPGMNGI 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R ++V + L + D E ++ G AGA+ ++ KPF L +R + Sbjct: 67 EVCQQIR---RSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRP 123 Query: 121 QKSKD 125 ++S+ Sbjct: 124 RESRQ 128 >gi|254220896|pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus Subtilis gi|254220897|pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus Subtilis Length = 130 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + G+ V A EA E E EL P+ +++D + Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ D+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 Query: 120 MQ 121 Q Sbjct: 119 RQ 120 >gi|156972517|ref|YP_001443424.1| transcriptional regulator CpxR [Vibrio harveyi ATCC BAA-1116] gi|156524111|gb|ABU69197.1| hypothetical protein VIBHAR_00149 [Vibrio harveyi ATCC BAA-1116] Length = 229 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + + + GF V EA E + +++D M + Sbjct: 1 MAKILLIDDDTELTSLLKEVLSFEGFDVTEANDGEAGLAAINSE--IDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKDE 126 S + Sbjct: 118 TSSTQK 123 >gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + G+ + A +A + E +P+ +++D + + Sbjct: 3 KKILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKV-SEFIPDLVLLDVMLPKLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + + L + + + G GA+ ++ KPF L + + Sbjct: 62 FQVCRKIRESFS---MPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFR 118 Query: 120 MQKS 123 ++ Sbjct: 119 RMEA 122 >gi|313115296|ref|ZP_07800772.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622380|gb|EFQ05859.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 231 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD V ++ +F G+ + A S EA ++E P+ +V+D M + Sbjct: 5 KILLVDDDRDVLEMLLSIFRRAGYTNLRTAASGAEALRIWQEE-QPSLIVLDVMMPDMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + ++++ + V V L + E I G GA+ +L KPF + L + + Sbjct: 64 F-SVLKKIRRTSRVPVLMLTARGEAEDRIEGLEIGADDYLAKPFLPKELLLRVGAILSRA 122 Query: 122 KSKDENQFLD 131 + +N+ ++ Sbjct: 123 YPR-QNEMVE 131 >gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 216 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A + EA + + +P+ ++ D M + Sbjct: 10 KRLLLIDDDPNLILLVKDYLEFRGYDVITAENGREALDVL-AQDIPDMIICDVMMPEMDG 68 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +VRQ P V V +L + + G GA+ +++KPF E L + + Sbjct: 69 YALVEYVRQDPSMNWVPVLFLSAKGQSNDRVKGLNTGADVYMVKPFEPEELVAQVESSLR 128 Query: 120 M 120 Sbjct: 129 Q 129 >gi|119489827|ref|ZP_01622582.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] gi|119454255|gb|EAW35406.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] Length = 641 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 58/132 (43%), Gaps = 4/132 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +++VD + V ++ + G+ V A A +++ + +++D M G+ Sbjct: 7 MKSKIIIVDDNSQNLGVLFNILDGLGYDVRVAQDGESALVKIKRDPA-DLILLDVMMPGI 65 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F + ++ P + + ++ + + G + GA ++ KPF+ + + ++ Sbjct: 66 NGFETCSRLKSDPSLAKIPIIFMTALSETIDRLKGLQLGAVDYITKPFSHDEVIARIQLH 125 Query: 118 PQMQKSKDENQF 129 Q+ K+ + Q Sbjct: 126 LQLYKTTQQLQQ 137 >gi|33866766|ref|NP_898325.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639367|emb|CAE08751.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 262 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R + GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + L + ++G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRR 122 >gi|333030003|ref|ZP_08458064.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332740600|gb|EGJ71082.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 242 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ V + + + G+ V A + + + ++ D + + Sbjct: 15 MIKILVVEDEVRVADLIKRGLEEVGYKVDAAYDGQQGLNLFQNNSY-HMIISDIILPHIS 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + ++ + L + + G AGA+ +++KPF+ L ++ L + Sbjct: 74 GFELCQKIRLIDKNIPILMLTALGTTDDKLEGFDAGADDYMVKPFDFRELDARIKVLLKR 133 >gi|330827912|ref|YP_004390864.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328803048|gb|AEB48247.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + G V A E + +E + LV+D M G Sbjct: 6 THILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKE-MKRLLEEREFDLLVLDLMMPGEDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ + +++ + L + I G GA+ +L KPFN L ++ + + Sbjct: 65 LTLC-RELRVKSNLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRT 123 Query: 122 KSKDE 126 +++ + Sbjct: 124 QAETQ 128 >gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 227 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + +L G+ V A A + +++D + G+ Sbjct: 1 MTRVLIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGA-DIVLLDLMLPGMP 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + V + L + ++ G GA+ ++ KP++ L MR + Sbjct: 60 GTEVCRQLRLS---SHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|269139358|ref|YP_003296059.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda EIB202] gi|267985019|gb|ACY84848.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda EIB202] gi|304559263|gb|ADM41927.1| Acetoacetate metabolism regulatory protein AtoC [Edwardsiella tarda FL6-60] Length = 461 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 4/133 (3%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD VR++ G A+ EA + + P+ +++D M Sbjct: 1 MKTRNRILIVDDEDNVRRMLTTALTLQGHETHAASHGAEALQRF-ADAPPDVVLMDIRMP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + A V + + E + R+GA +++KPF+ + L ++ Sbjct: 60 TMNGIDALKVMRARQPRTPVILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRA 119 Query: 118 PQMQKSKDENQFL 130 Q+Q K E + L Sbjct: 120 LQLQAMKQEIRSL 132 >gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 228 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + GF V A A E P+ +V+D M G+ F Sbjct: 8 KILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIA-AEFQPHVIVLDVMMPGMDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ G +V + L + + E + G GA+ +++KPF+ E L + + Sbjct: 67 EVCRLLRKN--GENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLRN 124 Query: 121 Q 121 Q Sbjct: 125 Q 125 >gi|237726077|ref|ZP_04556558.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. D4] gi|229435885|gb|EEO45962.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides dorei 5_1_36/D4] Length = 1357 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + +R LF + V+EA + E + +P+ ++ D M Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAENGEEGVDVAIS-KIPDLIISDIMMPVKDG 1162 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ P + + L + + ++ ++ G + +++KPFN E L+ +R L Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1223 QRERLKR 1229 >gi|229524692|ref|ZP_04414097.1| two-component system response regulator OmpR [Vibrio cholerae bv. albensis VL426] gi|229338273|gb|EEO03290.1| two-component system response regulator OmpR [Vibrio cholerae bv. albensis VL426] Length = 240 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|284034649|ref|YP_003384580.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283813942|gb|ADB35781.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + + V A + A + + P+ +++D + + Sbjct: 1 MTRVLVVDDEPQIVRALQINLKARRYEVHVAGTGTAALQVAAQHP-PDLVILDLGLPDLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + T+ + L D + AGA+ ++ KPF + L MR + Sbjct: 60 G-IEVIRGLRGWTEAPILVLSGRTDSTDKVEALDAGADDYVTKPFGIDELLARMRAALRR 118 Query: 121 QKSKDEN 127 E Sbjct: 119 SSGGTEQ 125 >gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 231 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ +L GF V + +A ++ + +++D + G Sbjct: 1 MSRILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGA-DLVLLDLQLPGQS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R V L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRARSS---APVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116 Query: 119 QMQKSKDEN 127 + Q +E Sbjct: 117 RRQGEPEEL 125 >gi|197121293|ref|YP_002133244.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171142|gb|ACG72115.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 466 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR R + G V EAT A E + P ++ D M + Sbjct: 12 RVLVVDDDPGVRYTLREILASEGLEVEEATDGEAALEKLGAQPYP-LVLTDLRMPRLDGM 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V + + + +AGA + KPF E L +R + + Sbjct: 71 ALLRKITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRRAVEAVR 130 Query: 123 SKDENQFLD 131 DEN+ L Sbjct: 131 LADENERLA 139 >gi|153807551|ref|ZP_01960219.1| hypothetical protein BACCAC_01831 [Bacteroides caccae ATCC 43185] gi|149129913|gb|EDM21125.1| hypothetical protein BACCAC_01831 [Bacteroides caccae ATCC 43185] Length = 1381 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+V+ +R + LF + + + AT+ E + KE LP+ ++ D M Sbjct: 1125 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDMAMKE-LPDLIICDVMMPIKDG 1182 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E V++ P + L +V+ + +I G GA+ ++LKPF L+ + L Sbjct: 1183 FECCREVKECPETCSIPFIMLTAKVEDDDIIHGLELGADDYVLKPFTPGILKAKVSNLIN 1242 Query: 120 MQKSKDEN 127 +++ + Sbjct: 1243 GRQTLKQM 1250 >gi|121997174|ref|YP_001001961.1| response regulator receiver modulated diguanylate cyclase [Halorhodospira halophila SL1] gi|121588579|gb|ABM61159.1| response regulator receiver modulated diguanylate cyclase [Halorhodospira halophila SL1] Length = 308 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD + HL D + + AT +A E P+ +++D M Sbjct: 12 TILIVDDEPTNIQALAHLLKD-DYHIRVATGGAKALEIAAGTPQPDLILLDVVMPEPDGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ ++ V ++ G GA ++ KPF+ R +R + Sbjct: 71 EICRRLKADRATQNIPVIFVTGRDSAADEEHGLELGAMDYITKPFSPRITRTRVRNHVDL 130 Query: 121 QKSKDENQFLD 131 ++ D + L Sbjct: 131 KRKTDALERLS 141 >gi|306819750|ref|ZP_07453409.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552215|gb|EFM40147.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 240 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + G+ V A+ EA+E C E + +V+D ++ + F Sbjct: 19 KLLVVEDEKELLDSIAEGLRLSGYAVDTASDGEEAQEMCYVENY-DLIVLDINLPKMDGF 77 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V V L + + G GAN +L+KPF+ + L +R L + ++ Sbjct: 78 TVLQKIREEDKLVNVIMLTARTQIKDRVKGLDLGANDYLIKPFHFDELEARIRSLLRRKQ 137 Query: 123 SKD 125 ++ Sbjct: 138 VQE 140 >gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 229 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 51/132 (38%), Gaps = 8/132 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ F V E E P+ +++D + G Sbjct: 1 MKQKILVVDDDSNICELLVVYLE-EDFQVKTVFDGNN-LEQVISEYRPDLILLDVMLPGK 58 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + +R ++ + +L + + + G GA+ ++ KPF+ + ++ + Sbjct: 59 NGFDICREIR---DKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAV 115 Query: 118 PQMQKSKDENQF 129 + +++ + Sbjct: 116 LRRVQNRSGKKR 127 >gi|322420796|ref|YP_004200019.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127183|gb|ADW14743.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 377 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 63/136 (46%), Gaps = 6/136 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +++VD + ++ D + +F ATS +A E + P+ +++D M G Sbjct: 1 MKRQTVMIVDDTPANIEILSESLGD-DYELFFATSGADALELIRADK-PDLILLDIMMPG 58 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + ++ P D+ + ++ ++ E+ I G GA +L KP + +R ++ Sbjct: 59 MDGYELCTILKGDPTTRDIPIIFVTAMIEEEQEIKGLELGAIDYLTKPISPHIVRARVKN 118 Query: 117 LPQMQKSKDENQFLDA 132 ++++ +D + L + Sbjct: 119 HLELKRYRDLLETLAS 134 >gi|253578241|ref|ZP_04855513.1| regulatory protein VanR [Ruminococcus sp. 5_1_39B_FAA] gi|251850559|gb|EES78517.1| regulatory protein VanR [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ +R+ R L G++V EA + + + +++D M Sbjct: 1 MKMDNHILVVEDDAAIREGVRILLEGEGYIVQEAEDGYQCLKKV--SDDIDLVILDIMMP 58 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ +R++ + V V +L + + G AG + +L+KPF+ L ++ Sbjct: 59 GISGIKTCEEIRKI---SHVPVLFLTAKSQESDKLLGLMAGGDDYLVKPFSYAELLARVK 115 Query: 116 ELPQMQKSKDE 126 L + + Sbjct: 116 ALLRRYHVYSQ 126 >gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 227 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + + G+ V A E + +E + +++D + Sbjct: 1 MKRILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDW-DVILLDLMLPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + V + ++G GA+ +++KPF E L +R + Sbjct: 60 GLEVCRRLRQE---KETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIF 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 RRMEYAE 123 >gi|262197840|ref|YP_003269049.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081187|gb|ACY17156.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 235 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 5/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + R GF V + E + E P+ +++D + Sbjct: 11 RKILIVEDEPDIVRGLRDALQFEGFQVEARGTGMEGLDAA-AEWGPDCVLLDLMLPDENG 69 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V + L + + G AGA+ ++ KPF+ L + + + Sbjct: 70 YRVCETLRSRD--PVVPIIILTAKSQDVDKVRGLEAGADDYVTKPFSVAELIARINAIFR 127 Query: 120 MQ 121 Q Sbjct: 128 RQ 129 >gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus DSM 14838] gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus DSM 14838] Length = 243 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ V + ++ + G+ A + ++ D + + Sbjct: 16 MHTILIIEDEPRVASLLKNGLEENGYQTMIAYDGVMGLRLFRVHT-FDLVISDIILPKMD 74 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L + + G AGA+ +++KPF+ L +R L Sbjct: 75 GFELCKEIRK--TNPGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLL 132 Query: 119 QM 120 + Sbjct: 133 KR 134 >gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC 15579] gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ +A++ EA E + + + +++D M + Sbjct: 5 KILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNV-HLIILDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 EACMKIREE-KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120 >gi|153808459|ref|ZP_01961127.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185] gi|149128781|gb|EDM19998.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185] Length = 1339 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ + V ++ EA E P ++ D M + Sbjct: 1075 RRILIVEDNDELRNYLLQTLSEE-YTVQTCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1132 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G + GA+ ++LKPFN L+ + L Sbjct: 1133 DELCKELKNNIETSHIPVILLTALNNEKDILSGLKIGADEYILKPFNIGILKATVDNLLT 1192 Query: 120 MQKSKD 125 + Sbjct: 1193 NRALLR 1198 >gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115 Query: 119 QMQKSKD 125 + K + Sbjct: 116 RRVKKTE 122 >gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 242 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA E E E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVE-EYNPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSR 120 >gi|261408948|ref|YP_003245189.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261285411|gb|ACX67382.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 1049 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 LL+VD + KV HL D G+ + T EA + E+ + ++ D M + Sbjct: 720 RLLIVDDDPVNLKVIHHLLADEGYRIVTVTRAEEALQLLEQGEW-DLIISDVMMPQMSGY 778 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + +++ + L E + G +GAN +L+KP + L+ +R L ++ Sbjct: 779 ELSRTIRQRYMLSELPILLLTARNRPEDIHMGFISGANDYLIKPVDHLELKTRVRALLEL 838 Query: 121 QKSKDENQFLDA 132 ++S E ++A Sbjct: 839 KRSIKERLHMEA 850 >gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 224 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ V + + + V A E + E + L++D + + Sbjct: 2 RILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAM-EKNFDLLILDWMLPKMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V L + E ++AG +G++ +L KPF L +R L + + Sbjct: 61 SVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120 Query: 123 S 123 Sbjct: 121 Q 121 >gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115 Query: 119 QMQKSKD 125 + K D Sbjct: 116 RRVKKTD 122 >gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516] gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516] Length = 233 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ +R+ + GF + EA S + E E P+ V+D + G+ F Sbjct: 8 KVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNK-PDVAVLDIMLPGIDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + L + I G GA+ +L KPFN L ++ + + Sbjct: 67 EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 126 Query: 123 SKDENQFL 130 K N + Sbjct: 127 QKQNNSQI 134 >gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM 15053] gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM 15053] Length = 231 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + F VF+ + +A + C + P+ ++D M + Sbjct: 4 KILIVDDEQEIADLVALYLQNENFTVFKHYNALDALD-CIRSETPDLAILDVMMPDMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++R+ V L + I G GA+ ++ KPF L ++ + Sbjct: 63 ELCRNIREQYRY---PVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQLRR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp. subtilis str. SMY] Length = 293 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + + + G+ + +A S EA + + + +V+D M G+ Sbjct: 61 SILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 119 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D +++L ++G GA+ ++ KPFN L +R + Sbjct: 120 FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 176 Query: 120 MQKSKDE 126 E Sbjct: 177 RTYQSKE 183 >gi|118594517|ref|ZP_01551864.1| osmolarity response regulator [Methylophilales bacterium HTCC2181] gi|118440295|gb|EAV46922.1| osmolarity response regulator [Methylophilales bacterium HTCC2181] Length = 238 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 5/120 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 + LVD +R++ +D G V A++ E + N +V+D M LE Sbjct: 10 IALVDDDPKIRELTAKYLSDQGLSVVTASNGAE-LDELRINYNINLIVLDLMMPEESGLE 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + D + L + D I G GA+ +L KPFN L + + + Q Sbjct: 69 VCQRLRVNKI--DTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARINAIIRRQ 126 >gi|104779513|ref|YP_606011.1| osmolarity response regulator [Pseudomonas entomophila L48] gi|95108500|emb|CAK13194.1| two-component response regulator OpmR [Pseudomonas entomophila L48] Length = 246 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F GF V +V + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLDRFFTSKGFRVRTVPNVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACKRLRASNNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELVARVKAVLRRQ 129 >gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 225 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + + GF F +A +E+ P+ +++D + G+ Sbjct: 1 MKPRILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAV-REVRPDLVLLDLMLPGM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 NGIDVCRVLRSDSG---VPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRAR 116 Query: 118 PQMQK 122 + + Sbjct: 117 LRRTE 121 >gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 235 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + R G+ V +A + L P+ +++D + G Sbjct: 8 KVLIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKA-LSPDMVLLDIMLPGKDGW 66 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ ++V + + + + + G GA+ +++KPF+ + + + + + Sbjct: 67 QVCREIRKI---SNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRR 123 >gi|262403061|ref|ZP_06079621.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586] gi|262350560|gb|EEY99693.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586] Length = 368 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 8/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + R + L + + A S +A C K+ P+ +++D M + Sbjct: 6 TILIVDDNPENRALLAGLLKPH-YRLLVAVSGAQALAICHKQK-PDLVLLDIMMPEMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P D+ V +L + E G GA ++LKP + L R ++ Sbjct: 64 EVCQRMRADPELQDIPVIFLTAKSQIEDEQHGFDVGAVDYILKPISPPILLARTRTHLRL 123 Query: 121 QK----SKDENQFLD 131 Q ++N+ L+ Sbjct: 124 QHTMKLLAEQNETLE 138 >gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 241 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ G+ V A S A + C P+ L++D M G+ F Sbjct: 15 KILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRT-FKPDALILDVMMPGMDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + +L E I G G + ++ KPF+ E + ++ L + Sbjct: 74 GLLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRR 131 >gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 225 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185] gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195] gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223] gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 241 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQQGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 2478 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 2/116 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + G V A + A E E+ + +++D M + Sbjct: 2358 KKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMDG 2417 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R+ + + + + + + AGA+ +L KP + + L +R Sbjct: 2418 YETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2473 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 10/126 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LLL++ ++ + + GF AT E P+ + +D + V Sbjct: 2091 LLLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMA-NEFQPHAITLDIQLPVVDGWS 2149 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---P 118 + +++ P + V+ + G GA +L KP ++E L +L Sbjct: 2150 VLDRLKRNPRTRHIPVHVIS----VMDKNQGNSQGAFGYLTKPVSKEGLERVFNQLASFL 2205 Query: 119 QMQKSK 124 + ++ + Sbjct: 2206 ERKERR 2211 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 4/85 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 LLLV+ + R L ++ G V + E E + +VID + Sbjct: 2210 RRLLLVEDDDVQRDSLVKLLSEGGDVEVTAVATGEEVLHHLETGE-FDCVVIDLMLPDTD 2268 Query: 61 E--FIAHVRQMPLGTDVFVYYLLME 83 + V+ D+ + + Sbjct: 2269 GIRLVEEVKTQNRFRDLPIVIYTGK 2293 >gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 233 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M+S+L++D + + + A E +K + +++D M + Sbjct: 1 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +++ V L + D + ++G R GA+ +L KPF+ L + L + Sbjct: 61 DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 240 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + G+ A E F E ++ + +++D + + Sbjct: 16 RILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAET-VVYDLIILDLMLPRLDGM 74 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V L + G AGA+ +L KPF L +R L + + Sbjct: 75 EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRE 133 >gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 240 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 12/126 (9%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------LLPNYLVIDESM 56 +L+V+ + + L GF V A A + + +++D + Sbjct: 9 VLIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLML 68 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 G+ +R + V V + + G GA+ ++ KP++ L + Sbjct: 69 PGMSGTEVCRQLRS---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARI 125 Query: 115 RELPQM 120 R + + Sbjct: 126 RAVLRR 131 >gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha proteobacterium HIMB114] gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha proteobacterium HIMB114] Length = 226 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + LV+ + + + GF +++ EA KE P+ +++D + + Sbjct: 4 KVFLVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEI-KEQEPDLVLLDWMLPDLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ D+ + L + E +A AGA+ ++ KPF L + L + Sbjct: 63 DICRSLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALLRR 122 Query: 121 QKSK 124 K + Sbjct: 123 SKPR 126 >gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 266 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ V + + GF V A + + +++D ++ Sbjct: 39 MQRILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNY-DLVILDLNLPHAN 97 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ + + L + + GA+ +L+KPF+ L +R Sbjct: 98 GYEVCEVIRR--KNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFL 155 Query: 119 QMQKSKDEN 127 + S+ + Sbjct: 156 KRAGSEVQE 164 >gi|229015904|ref|ZP_04172869.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022125|ref|ZP_04178677.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739177|gb|EEL89621.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745391|gb|EEL95428.1| Two-component response regulator [Bacillus cereus AH1273] Length = 223 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA E E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1415 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 9/130 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL D +H +R L D + V A E +K P+ ++ D M L Sbjct: 645 ILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKK-RRPDLVLSDVMMPRLDGLG 702 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-----E 116 + +R P D+ V +L E + G AGA+ +L KPF+ L +R Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTA 762 Query: 117 LPQMQKSKDE 126 + + E Sbjct: 763 AIRRTALRTE 772 Score = 91.0 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 11/119 (9%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62 +L+V+ + V + L +D G+ A+S +A + ++ D +M G+ Sbjct: 1300 ILVVEDNAEVGEFSTQLLHDLGYQTVLASSGEQALALLGDNAKRFDLVLSDVAMPGMDGV 1359 Query: 63 I--AHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ ++ V G L KP++ E L +R+ Sbjct: 1360 TLGREIKKR--LPELPVVLNSGYAHMLADEDHGFEL-----LHKPYSVEDLSKVLRKAM 1411 >gi|254248175|ref|ZP_04941495.1| Response regulator [Burkholderia cenocepacia PC184] gi|124874676|gb|EAY64666.1| Response regulator [Burkholderia cenocepacia PC184] Length = 347 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + G++V A S +A + + + P+ +++D M + F Sbjct: 37 ILIVDDTPENLAFLSDTLQARGYVVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 95 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + V ++ + E ++ G R G ++ KP E L + + Sbjct: 96 TCVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 155 Query: 122 KSK 124 +++ Sbjct: 156 RAQ 158 >gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957] gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957] Length = 259 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ +R + L GF V A + E + + + +++D + G L+ Sbjct: 27 ILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPV-DLVLLDVMLPGQSGLD 85 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V + + + + G GA+ +L KPF+R L +R + + Sbjct: 86 LCRTIRARSE---VPIIMVTARGEEADRVVGLELGADDYLPKPFSRPELLARIRAVLRRA 142 Query: 122 KS 123 ++ Sbjct: 143 QA 144 >gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 234 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL D + V R G+ V AT +A + E P+ +V+D M Sbjct: 1 MYTILLADDEESILDVCRRYLELEGYRVITATDGQDALKLV-NEYSPHLIVLDIMMPIQD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR + D + L I G GA+ +L+KPF+ + L + + Sbjct: 60 GWHVAEQVR---VSRDTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|145641399|ref|ZP_01796978.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae R3021] gi|145273942|gb|EDK13809.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 22.4-21] Length = 164 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ +R++ + + V EA+ A ++ P +++D + G Sbjct: 3 RKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN--PKLILLDWMLPGRSG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++FI ++++ + + L + E IA AGA+ ++ KPF+ + L + + + Sbjct: 61 IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120 Query: 120 MQKSKDEN 127 + Sbjct: 121 RIYEQQSQ 128 >gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis MPA1U2] gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis MPA1U2] Length = 226 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + V + F+ G A E E ++ + L++D + G+ Sbjct: 2 RILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGH-DLLILDWMLPGMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G+ V + L + + G GA+ ++ KPF+ TL ++ + + + Sbjct: 61 ALCRKIREEGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRRVQ 120 >gi|315225247|ref|ZP_07867064.1| two component system sensor histidine kinase regulator [Capnocytophaga ochracea F0287] gi|314944930|gb|EFS96962.1| two component system sensor histidine kinase regulator [Capnocytophaga ochracea F0287] Length = 1348 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + +R +H+ N+ F V A E E +P+ +V D M + Sbjct: 1096 TILVVEDNDDMRDYIQHILNEH-FHVLLARDGEEGLELAITH-IPDLIVSDIMMPKRDGI 1153 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-LPQ 119 + +R + + L +++ G G ++ KPF+ + L + L Sbjct: 1154 SMVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENILLS 1213 Query: 120 MQKSKDE 126 +K ++ Sbjct: 1214 RKKLWEQ 1220 >gi|299143947|ref|ZP_07037027.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518432|gb|EFI42171.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 223 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+V + G V EA EA E C KE + +V+D M + Sbjct: 1 MFKILVVDDEEKIREVIKTYAEFEGHNVVEACDGLEAIEKC-KEQEFDVIVMDIMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ +++ D+ V L + + G G + +++KPF+ + L + + + Sbjct: 60 GFSSY-KEIKKINDIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKR 118 Query: 121 QKSKDENQFLD 131 ++ EN L+ Sbjct: 119 RQRIIENAVLE 129 >gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + + E+ + +++D M + F Sbjct: 4 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|225377220|ref|ZP_03754441.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM 16841] gi|225210924|gb|EEG93278.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM 16841] Length = 232 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 47/119 (39%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL + + + + + V EA ++ E + +++D M + Sbjct: 6 RLLLAEDEEDLSRALVMVLKHNNYSVDAVYDGAEALDYLENGGNYDGVILDIMMPKMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G V V L + + + + G +GA+ +L KPF+ + L +R + + Q Sbjct: 66 TVLKTIRRHGNSVPVLLLTAKAEIDDRVEGLDSGADDYLPKPFSMKELLARIRAMTRRQ 124 >gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] Length = 239 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A++ A + +E+ P+ +++D M G+ F Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKA-REVRPDAVILDVMMPGMDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 73 GLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 >gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 230 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+ D + + + + GFM A EA + K P L++D M Sbjct: 3 KYILIADDNEGILDILKTYAEKEGFMPLLAHDGLEAIDIFSK-YHPLLLLLDVMMPKKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++V + + + + I G GA+ +++KPF+ + +R + + Sbjct: 62 FEVCREIRQK---SNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILR 118 Query: 120 MQKSKDEN 127 + +E+ Sbjct: 119 RVDNSNED 126 >gi|218439786|ref|YP_002378115.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7424] gi|218172514|gb|ACK71247.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7424] Length = 308 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD R + + + G+ V A E + P+ +++D M + F Sbjct: 15 ILVVDDDRSTRTLLKVAMEEEGYQVITAKDGEECINEFNR-CQPHMILLDAVMPEMDGFT 73 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ G+ + + + D + + GA ++ KP + L ++ L Sbjct: 74 CCQRLRELSEGSQIPILMITALDDQDSIDQAFTCGAVDYITKPIHWAVLAQRVKRLLTTS 133 Query: 122 KSKDENQFLD 131 K+ E + + Sbjct: 134 KALVELEQVQ 143 >gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A E+ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRSRSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ +R+ G V A + E P +++D + G+ Sbjct: 1 MPRVLLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALI-GGFRPELVLLDLMLPGIN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L D ++ G AGA+ +++KP E + ++ + Sbjct: 60 GVQVCRRIRE---TSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRLK 120 >gi|307152868|ref|YP_003888252.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306983096|gb|ADN14977.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 125 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+VD S +R++ L G V EA S EA+E +KE +P+ ++ D M + Sbjct: 1 MITVLIVDDSPSLRQILIELLQKRGINVLEAASGMEAQEQIQKE-VPDLVITDLIMPQMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P DV V + + G + GA++++ KPF + ++ L Sbjct: 60 GYELCRWIKNNPSTQDVPVLICSTKSEEFDRYWGMKQGADAYITKPFQPAEMLQTIKFLL 119 Query: 119 QMQK 122 Q ++ Sbjct: 120 QNRR 123 >gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115 Query: 119 QMQKSKD 125 + K + Sbjct: 116 RRVKKTE 122 >gi|16330585|ref|NP_441313.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653076|dbj|BAA17993.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 366 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD S + L D + + A+ +A P+ +++D M Sbjct: 12 TVLIVDDSPDTLTMLSGLLKDH-YRIKIASKGEQALAIAASMPPPDLILLDIMMPEIDGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ ++ V +L + D G GA ++ KP + L +R + Sbjct: 71 EVCTKLKADTQTKNIPVIFLTAKTDVADEQHGFSLGAVDYITKPISPPILLARVRTHLNL 130 Query: 121 QKSKDENQFL 130 + + D L Sbjct: 131 KAAYDRLTRL 140 >gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 230 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ R GF V + E + ++ + L++D + G+ Sbjct: 1 MRKILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRI-RDGEYDLLILDIMLPGMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++++ D+ V + + + I G + GA+ ++ KPF+ L + Sbjct: 60 GY-EILKKIRDEKDIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAK 118 Query: 121 QKSKD 125 + Sbjct: 119 YERLR 123 >gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + G+ V A + EF + + L++D + G Sbjct: 1 MK-ILLVDDEIELTDPLSRVLTREGYEVDVADNGATGSEFATQGNY-DLLILDWMLPGKT 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 59 GLAICQKLRSEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family protein [Arthrospira platensis str. Paraca] Length = 227 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V +A +A + + L++D + L Sbjct: 2 RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQA-GTLAQNHHYDLLILDWMLPHQSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A +R + +L + + + G AGA+ +L+KPF L +R L + Sbjct: 61 EICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] Length = 232 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + KV + G+ AT EA + + E+ P+ +++D M + Sbjct: 1 MQNILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFD-EVSPSAVLLDVMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + + + I G GA+ +++KPF+ + +R + Sbjct: 60 GYEVCRKIRAK---SNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|229056358|ref|ZP_04195775.1| Two-component response regulator [Bacillus cereus AH603] gi|228720977|gb|EEL72521.1| Two-component response regulator [Bacillus cereus AH603] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA E E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ V +A + EA +++D M + Sbjct: 1 MK-ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + + V L + D I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QK 122 + Sbjct: 119 AE 120 >gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 252 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 12/131 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--------PNYLVIDE 54 +L+V+ ++R + D G+ + + A ++E + L++D Sbjct: 20 RILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDL 79 Query: 55 SME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + L+ +R G + + L + + G GA+ +L KPF+ L Sbjct: 80 MLPQVNGLDICRLLR--YQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137 Query: 113 AMRELPQMQKS 123 R L + Q Sbjct: 138 RCRALIRRQNL 148 >gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD +R + R G+ EA ++ A + P+ +++D + G + Sbjct: 5 KVLIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIV-DDRPDIVLLDWMLPGGSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +++ + D+ V L + +I G GA+ ++ KPF L ++ L + Sbjct: 64 ELLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYITKPFALRELLARIKALLRR 123 Query: 121 QKSKDENQFL 130 KS D+ L Sbjct: 124 AKSSDDRNLL 133 >gi|299144931|ref|ZP_07037999.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298515422|gb|EFI39303.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1372 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F D F V A + E ++ +P+ +V D M + Sbjct: 1113 LLIVEDNEEIQKYISESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 +++ + + + L + + G GA+S+L KPF+ LR + L + Sbjct: 1171 LCRQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230 Query: 121 QKSKDE 126 +K + Sbjct: 1231 KKLIAQ 1236 >gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+V+ + K ++ N + V A +A E KE P+ +++D + Sbjct: 3 NKVLIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEK-PDLILLDIMLPKLSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ + L + D I G GA+ ++ KPF+ L +R + + Sbjct: 62 FEVCRILRKEMNS---PILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLR 118 Query: 120 MQKSKD 125 + + Sbjct: 119 RTQIME 124 >gi|258591620|emb|CBE67921.1| putative Nitrogen assimilation transcription regulatory protein (ntrC)(synonyms:glnT, glnG) [NC10 bacterium 'Dutch sediment'] Length = 487 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 1/132 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R R G+ V A E + + +++D M G Sbjct: 5 RHILVVDDEESIRWALRKALEREGYQVVLAADGVEGLARA-TDPSIDLVLMDIKMPGAEG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R ++ V + + + + GA ++ KPF+ L ++ + +++ Sbjct: 64 LETLSRIKETRPELPVIIMTAFGTLQAAVQAMKRGAYDYITKPFDFGELTILVQRVFEIR 123 Query: 122 KSKDENQFLDAI 133 + + ++A+ Sbjct: 124 ELTERVAQMEAL 135 >gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 10876] gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 10876] Length = 238 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 65 EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121 >gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + FMV + + + + + +V+D + G Sbjct: 7 KILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQ-MDRFLERENYHLMVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 66 SICRRLRSQNNPIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRRQ 124 >gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 232 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + + G+ V A + +A + ++E P +++D + G+ Sbjct: 5 KILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEEN-PRLMLLDLMIPGLDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R D+ V L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 64 DVCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRR 123 Query: 121 QKS 123 KS Sbjct: 124 TKS 126 >gi|254418732|ref|ZP_05032456.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196184909|gb|EDX79885.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + G EA A PN +V+D +M + Sbjct: 7 TVLVVDDDPHIRDLLTFALQKAGLATREAADGEAALADI-ALYRPNLVVLDINMPRMDGI 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R D+ V +L D I G GA+ ++ KPF+ + + + + Sbjct: 66 EACRRIRAQG---DLPVLFLSSRDDEIDRILGMELGADDYVTKPFSPREVVARVAAILRR 122 >gi|254411499|ref|ZP_05025276.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182000|gb|EDX76987.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 524 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+VD + + + G+ V +A S A E P+ + +D M + Sbjct: 6 TSLLIVDDNIDNLRSLAAILRLEGYKVRKAISGQVALETVRSHP-PDLIFLDIKMPQMDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++Q + + +L + + G ++ KPF + + + Sbjct: 65 YTVCSILKQDTTTGSIPIIFLSALNETADKLKAFAVGGVDYITKPFQAPEVVARVENQLR 124 Query: 120 MQKSKDEN 127 +Q+ + Sbjct: 125 LQRLSQQL 132 >gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R+ + G F V A++ +A + ++ P+ ++ D M Sbjct: 5 LLLVDDEPGIRESVPAYLEEVGGFTVDVASNANDAWQML-QQKTPDLVITDIMMPQVDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F+ +R+ P + V +L I G +AG +++L KPF+ + L + L + Sbjct: 64 QFLKKLREDPRFKSLPVIFLTARGMTTDRIQGYQAGCDAYLSKPFDTDELVAIVENLLER 123 Query: 121 QKSKDEN 127 + + + Sbjct: 124 RATTAQE 130 >gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + +++ EA + +A E + + +++D + G + Sbjct: 8 KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDY-DVILLDLMLPGRDGI 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + L + + + G G + +++KPF+ + ++ L + Sbjct: 67 EVCKGIREK---KATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 123 >gi|158522817|ref|YP_001530687.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511643|gb|ABW68610.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfococcus oleovorans Hxd3] Length = 466 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 4/135 (2%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD R + R L +G EA A E+ + + +++D M Sbjct: 9 MKKHATILIVDDDAGHRSMLRTLLEGWGHQTAEADDGLAAVEYVQTRPA-DIVLMDLKMV 67 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + A + V V + + + + GA +L KP + E LR + + Sbjct: 68 HMSGMEALEQIRSFNPGVPVIIMTAFSSVDTAVEALKKGAYDYLTKPLDFEKLRLTLERI 127 Query: 118 PQMQKSKDENQFLDA 132 + + + EN+ L Sbjct: 128 LEAARLRKENRHLKE 142 >gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD VR+ R G+ V AT EA E P+ ++D M L Sbjct: 2 KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEAL-KLIAEERPDLAILDVMMPKKDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G D+ + L E+ +AG AGA+ +L KPF E L R L + Sbjct: 61 DVCRELRSH--GDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRR 118 >gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20] Length = 248 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ V A + A +E+ P+ +V+D + Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSA-QEIDPDVIVLDIMLPDFDGL 76 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L + E +AG AG + ++ KPF+ E + +R L + Sbjct: 77 EVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136 Query: 123 SKDENQ 128 + +E Q Sbjct: 137 ASEEKQ 142 >gi|193214111|ref|YP_001995310.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] gi|193087588|gb|ACF12863.1| response regulator receiver protein [Chloroherpeton thalassium ATCC 35110] Length = 125 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + K+ + + V EA + ++ +P+ +++D +M V Sbjct: 3 KTILVVDDEVAMLKILSFILTKS-YDVVTKKDGDEALFWLQQGNIPDLVIVDINMPNVDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI +VR D+ + L E I GA+ F++KPFN E L+ + + + Sbjct: 62 YSFIKNVRVSGFFKDIPIVVLSANDKSEDRIKCLNIGADDFIVKPFNPEELKARISSIFR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|170078157|ref|YP_001734795.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885826|gb|ACA99539.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 379 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 5/137 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+++ V + R + GF V AT E + LP+ ++ D ++ Sbjct: 1 MATILVIEDELNVLSILRDILTAEGFAVITATDGQIGLETAYAQ-LPDLIICDVNLPRLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + T + +L G GA+ ++ KPF R+ L A+R Sbjct: 60 GYGVLKALHSNSTTTTIPFIFLSARASRSAQRQGMDLGADDYIPKPFTRQELLNAIRGRL 119 Query: 119 QMQKSKDEN--QFLDAI 133 ++ ++ Q L+ + Sbjct: 120 SRRQGLAQHSAQQLEQL 136 >gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC 14579] gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134] gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264] gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842] gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 4222] gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 200] gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis Bt407] gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273] gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272] gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676] gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185] gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2] gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15] gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4] gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24] gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550] gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W] gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171] gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC 14579] gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus] gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134] gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264] gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842] gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W] gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550] gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24] gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4] gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15] gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2] gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185] gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676] gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272] gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273] gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis Bt407] gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 200] gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 4222] gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171] gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis serovar chinensis CT-43] Length = 238 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 65 EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121 >gi|331092535|ref|ZP_08341357.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400756|gb|EGG80359.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium 2_1_46FAA] Length = 232 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + G+ V +A EA + ++E + LVID M + Sbjct: 1 MFNILVCDDDKEIVEAIEIYLRQEGYNVLKAYDGEEALKVLKREEKVDLLVIDVMMPRLD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 61 GIRATLKIREENS-LPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 119 >gi|241763069|ref|ZP_04761130.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241367852|gb|EER62084.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 251 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G+ V EA ++ E P+ LV+D + Sbjct: 20 MRTVLVVEDEPQIRRFVRSALEAEGWQVHEAATMREGLSAAGT-RQPDLLVLDLGLPDGD 78 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V + L D + AGA+ +L KPF L +R + Sbjct: 79 GV-DLICDVRGWSAVPIIVLSARTDEADKVRALDAGADDYLTKPFGTGELMARVRANLRR 137 Query: 121 QKSKDEN 127 ++ N Sbjct: 138 PRAARGN 144 >gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28] gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28] Length = 238 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 65 EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121 >gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 4 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|160942867|ref|ZP_02090106.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii M21/2] gi|158445768|gb|EDP22771.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii M21/2] gi|295103953|emb|CBL01497.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 234 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R + G V EA S A ++ + ++D + G+ Sbjct: 1 MVRVLVVEDEANIRDMIALNLRHAGMEVVEAESAEAALPLLAQKPGCDAAILDVMLPGMN 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L + + I G GA+ ++ KPF+ L + L Sbjct: 61 GFSLCETIRRTD--QQIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALC 118 Query: 119 QM-QKSKDEN 127 + ++K+E+ Sbjct: 119 RRVIRTKEED 128 >gi|90412688|ref|ZP_01220689.1| putative transcriptional regulator OmpR [Photobacterium profundum 3TCK] gi|90326263|gb|EAS42682.1| putative transcriptional regulator OmpR [Photobacterium profundum 3TCK] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLSRETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRNANSVLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124 Query: 123 SKD 125 + Sbjct: 125 IEA 127 >gi|331085462|ref|ZP_08334547.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407700|gb|EGG87198.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 145 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +++V+ +R+ G+ VF+A + E E+E + ++D M G+ Sbjct: 1 MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREK-IDLAIVDIMMPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V L + + + G GA+ ++ KPF L + + Sbjct: 60 DGITMTMRLREKY-EFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLR 118 Query: 120 MQKSKDE 126 E Sbjct: 119 RYNRFQE 125 >gi|313158368|gb|EFR57767.1| putative sensory transduction protein RegX3 [Alistipes sp. HGB5] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V A S +A + +++D M + F Sbjct: 5 KILVVDDEESLCEILQFNLEVEGYEVDTAYSAEQALGM--HPERYSLILLDVMMGEMSGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P V + + + + +AG GA+ ++ KPF+ + +R + + Sbjct: 63 KMARQLRAQPETAAVPIIFCTAKDTEDDTVAGLNIGADDYIAKPFSVREVLARVRSVLRR 122 Query: 121 QKSKDENQF 129 ++ Sbjct: 123 TAPQEGQSR 131 >gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ + ++ GF VF A E + + +++D + + Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSY-DIILLDVMLPKM 59 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R+ + V + L + + + G GA+ ++ KPF+ E L ++ L Sbjct: 60 SGMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKAL 116 Query: 118 PQMQK 122 + K Sbjct: 117 LRRTK 121 >gi|119513685|ref|ZP_01632685.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119461659|gb|EAW42696.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 366 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD S + + + G+++ A + +A EK + +++D M G+ Sbjct: 10 KILVVDDSPDNVFLIKTILQGEGYIISTAENGADALVELEKSPC-DLVLLDLMMPGMDGY 68 Query: 62 -FIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + + + G GA+ F+ KP + L +R L + Sbjct: 69 EVTRRIRGDTKFQPYIPILLITAHDAP-NVAKGLDLGADDFIRKPVTLDELLARVRSLLR 127 Query: 120 MQKSKDENQFLD 131 +++S DE + Sbjct: 128 LKRSIDERDEIA 139 >gi|86741974|ref|YP_482374.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86568836|gb|ABD12645.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 272 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL V+ + + R GF V A A P+ +++D + + Sbjct: 23 MTRLLFVEDEPQLLRAMRITLRARGFEVRTALDGRHALSEA-ASCPPDLVILDLGLPDMD 81 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + T V + L +A AGA+ ++ KPF+ + L +R + + Sbjct: 82 GV-EVIQGLRAWTGVPIIVLSGRASGHDKVAALDAGADDYVTKPFSIDELLARVRAVTRR 140 Query: 121 QKSKD 125 S + Sbjct: 141 ATSAE 145 >gi|317475905|ref|ZP_07935161.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316907938|gb|EFV29636.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1362 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 1 MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M +L+V+ ++ + +D + V ++ EA + ++ P+ ++ D Sbjct: 1104 MKSKTRLRVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDT-PDLVISDVM 1161 Query: 56 MEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 M + ++Q V V L + E + G GA+++++KPFN E L+ Sbjct: 1162 MPEMDGLTLCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKT 1221 Query: 114 MRELPQMQKSKD 125 + L ++ Sbjct: 1222 IANLINNRRLLR 1233 >gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] Length = 230 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD + + GF V A + E ++ + ++D + G+ Sbjct: 7 SILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDY-DLFILDIMLPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V +L + G G + +L KPF L +R L + Sbjct: 66 ELCRRLRARTAS---PVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122 Query: 121 QKSKD 125 + +D Sbjct: 123 GRLED 127 >gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22] gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 2/128 (1%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD V +V + G+ V A P+ +V+D + G+ Sbjct: 2 LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPA-ALARAAAHRPDLVVLDLMLPGMDGLEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 R G V V L D + I G GA+ ++ KPF+ L + + + + Sbjct: 61 CRRLRARGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRARPA 119 Query: 125 DENQFLDA 132 + + L A Sbjct: 120 SDARQLTA 127 >gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3] gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 241 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R +G + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQVGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 254 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF ++EA +A + E+ + +++D M + F Sbjct: 33 NILIVDDDPHIRELVSVFLEREGFQIYEAIDGLDALQKM-NEVKVDMVILDIMMPNMDGF 91 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 92 DVCFELRK---YYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 Query: 121 QK 122 + Sbjct: 149 YQ 150 >gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ +R + R F VFEA++ E + + +++D M + Sbjct: 3 KSILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQK-IDLVLLDIMMPVMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + V V L + + E + G GA+ ++ KPF+ + L ++ L + Sbjct: 62 LTMLEKLREV-STVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRT 120 Query: 122 K 122 + Sbjct: 121 R 121 >gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+VD + + D GF + EA E E+ + +++D M + Sbjct: 1 MDRILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + ++ + + G GA+ ++ KPF E L ++ + Sbjct: 61 GLELCRRVRDQLKA-PIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRR 119 Query: 121 QKSKDEN 127 +K N Sbjct: 120 EKRHQMN 126 >gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ R F V T E KE + L++D + + Sbjct: 2 MKKILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNF-KENKFDLLILDIMLPQID 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + D+ V + + + I G GA+ ++ KPF+ L ++ + Sbjct: 61 GF-SILHSIQEEKDIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIKN 119 Query: 121 QK 122 + Sbjct: 120 YE 121 >gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R R G V EA EA C +E + +++D M + Sbjct: 1 MSKILIVDDETNIRAGLREYAEFEGHEVTEAGDGMEAVTIC-REQDFDAIIMDVMMPKLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V L + + G G + +++KPF+ + + +R + Sbjct: 60 GFSACKEIRK---TKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVII 116 Query: 119 QMQKSKDEN 127 + +N Sbjct: 117 SRNRQHLQN 125 >gi|269926131|ref|YP_003322754.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789791|gb|ACZ41932.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 243 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L VD + K+ L + G V A +A E + P+ +++D + + F Sbjct: 8 ILAVDDDPLTGKLIDFLLENEGHEVEIAADPSQALRALE-QRTPDLILLDVQLPRMDGFT 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 ++ V L + + + G +GA+ +++KPF L ++ + + Sbjct: 67 LLKHIKKQYPEMPVIMLTARAEMQDKLTGLESGADDYVVKPFEPAELVARVKSVLRRA-- 124 Query: 124 KDENQFLDA 132 N+ L A Sbjct: 125 ---NRQLAA 130 >gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2] gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39] gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341] gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39] gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2] gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R + R F GF V EA+ EA E + + ++D M + Sbjct: 3 KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIF-SENIVDLAILDIMMPKLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++R++ ++ + L + E + G GA+ ++ KPF+ + L + L + Sbjct: 62 LAVCRNIREV---SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLR 118 Query: 120 MQKSKDENQFLD 131 + ++ LD Sbjct: 119 RTGTLNDKNILD 130 >gi|78777953|ref|YP_394268.1| two component transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78498493|gb|ABB45033.1| two component transcriptional regulator, winged helix family [Sulfurimonas denitrificans DSM 1251] Length = 220 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ FGF V +A + E + +++D ++ G+ Sbjct: 1 MKKILMIEDDLELAEILTEYLQQFGFDVVTEDDPFKAVSILKLEP-FDLVILDLTLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ + D + GA+ ++ KP++ L + + Sbjct: 60 GLEVCEAIRER---QDIPIIISSARSDVTDKVKALELGADDYIPKPYDPRELEARIHSVL 116 Query: 119 QMQKSKDENQ 128 + ++K + + Sbjct: 117 RRYEAKSQQK 126 >gi|149189914|ref|ZP_01868193.1| response regulator/phosphatase [Vibrio shilonii AK1] gi|148836229|gb|EDL53187.1| response regulator/phosphatase [Vibrio shilonii AK1] Length = 365 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + V + D + V A S A + +K P+ +++D M + Sbjct: 32 TVLVVDDTPENLDVLNGILTDS-YKVKVAISGRIALKIAQKVPRPDIVLLDVMMPEMDGY 90 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ PL +D+ V ++ + + G GA +++KP + +R + + Sbjct: 91 QVCEQLKANPLTSDIPVIFVTAKGEVSDETKGFELGAVDYIIKPVSPPIVRARVATHLSL 150 Query: 121 QKSKDENQFL 130 K + + L Sbjct: 151 HHQKRQLEKL 160 >gi|121726691|ref|ZP_01679916.1| transcriptional regulator OmpR [Vibrio cholerae V52] gi|147673571|ref|YP_001218202.1| osmolarity response regulator [Vibrio cholerae O395] gi|262170044|ref|ZP_06037733.1| two-component system response regulator OmpR [Vibrio cholerae RC27] gi|4433393|gb|AAD20723.1| response regulator homolog OmpR [Vibrio cholerae] gi|121630852|gb|EAX63234.1| transcriptional regulator OmpR [Vibrio cholerae V52] gi|146315454|gb|ABQ19993.1| transcriptional regulator OmpR [Vibrio cholerae O395] gi|227014600|gb|ACP10810.1| transcriptional regulator OmpR [Vibrio cholerae O395] gi|262021452|gb|EEY40164.1| two-component system response regulator OmpR [Vibrio cholerae RC27] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|332705121|ref|ZP_08425203.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332356071|gb|EGJ35529.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 276 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + V ++ GF V T A E P+ +++D M G+ F Sbjct: 10 ILVVDDTPTNLSVISQALHNAGFTVAVETDGESAIEQVNYN-QPDLILLDVMMPGIDGFE 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P D+ V ++ D + G GA ++ KPF ++ + +R Q++ Sbjct: 69 TCKRLKANPSNRDIPVIFMTALTDTVDQVKGLSIGAVDYITKPFQQDEVLARVRIHLQLR 128 Query: 122 KSK----DENQFLD 131 ++N L Sbjct: 129 HLTITLDEQNARLK 142 >gi|260904234|ref|ZP_05912556.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 281 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLV+ V +V R+ + GF+V E +A E EL+P+ +++D + G+ Sbjct: 54 RRLLLVEDDPTVAEVARNYLRNAGFLVDEVADGFQALESV-AELVPDLVILDRKLPGIDG 112 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R T V V L E I G +GA+ +L KPF+ L ++ + + Sbjct: 113 TEVCRRLRS---FTAVPVLMLTALSATEDRIDGLESGADDYLTKPFSPRELVLRVQSILK 169 Query: 120 M 120 Sbjct: 170 R 170 >gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 261 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + GF A +EL P+ +++D + G+ Sbjct: 37 MKARVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPAL-RELKPDLVLLDLMLPGM 95 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 96 NGIDVCKAIRSESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRAR 152 Query: 118 PQMQKSK 124 + +++ Sbjct: 153 MRRTEAE 159 >gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + +V+D + G Sbjct: 7 KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQ-MDRLLERENFHLMVLDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ D+ + L + D I G GA+ +L KPFN L + + + Sbjct: 66 SICRRLRQQEN--DMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123 Query: 121 QKSKD 125 + S+ Sbjct: 124 RSSEA 128 >gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725] gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726] gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725] gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 236 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + L GF A A E + + +++D + G+ Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKF-ADNDIDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRA---TSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QMQKSKDEN 127 + + N Sbjct: 117 RRGNDQASN 125 >gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2] gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 1046 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 2/131 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L VD + +V L G V EA + + ++ D M + + Sbjct: 714 RVLAVDDDGVNLRVLEELLYATGCSVVAVDHAEEALQLLNGRARFDLVITDWMMPEMSGI 773 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +++ V L + AG AGAN FL KP + E L+ +R L M Sbjct: 774 ELCRRIREGYSLSELPVLLLTARDLPGDIHAGFMAGANDFLRKPVDAEELKARVRTLLNM 833 Query: 121 QKSKDENQFLD 131 + S +E + Sbjct: 834 RNSAEEAVRSE 844 >gi|257453899|ref|ZP_05619176.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus SK60] gi|257448671|gb|EEV23637.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus SK60] Length = 245 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 44/127 (34%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEARE-FCEKELLPNYLVIDESMEGVL 60 ++LL++ + ++ + V A + E E + +++D + + Sbjct: 9 KTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMD 68 Query: 61 E--FIAHVRQM--PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +RQ + L + D + G GA+ ++ KPF L +R Sbjct: 69 GMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRA 128 Query: 117 LPQMQKS 123 + + Sbjct: 129 VMRRHDL 135 >gi|227821649|ref|YP_002825619.1| response regulator PleD [Sinorhizobium fredii NGR234] gi|227340648|gb|ACP24866.1| two component response regulator [Sinorhizobium fredii NGR234] Length = 455 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A+ A CE + + +++D M + F Sbjct: 4 RILVVDDVPANLKLLEARLVAEYFDVLTASDGRSALAVCENTPV-DLVLLDIMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ T + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKANNRTTHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLVRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KNVSDELRLRA 133 Score = 73.3 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/128 (10%), Positives = 43/128 (33%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 ++LLVD ++ V + A E + ++++ + + Sbjct: 155 NVLLVDGRASSQERLLRALKPI-AEVAVISDPQAALFEA-AENSFDLVIVNANFDDYDPL 212 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + + + + E ++ G ++++P + L + Sbjct: 213 RLCSQLRSLERTRFIPILLVTEQGSEEMIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272 Query: 121 QKSKDENQ 128 + D+ + Sbjct: 273 KHCNDQLR 280 >gi|153807242|ref|ZP_01959910.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185] gi|149130362|gb|EDM21572.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185] Length = 1318 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA E +KE +P+ ++ D M Sbjct: 1045 KRIEGAKMLIVEDNESIKQMLAGIFETF-YQVSTASDGEEALEMIQKE-MPSIILSDVVM 1102 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1103 PRMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1162 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1163 NNLVNSRRLLQE 1174 >gi|72383330|ref|YP_292685.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003180|gb|AAZ58982.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 265 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 8/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R + GF V +A + + + P+ +++D + L Sbjct: 5 ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKG-QALALQYAPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + + + + + G +GA+ ++ KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRRT 123 Query: 122 K-----SKDENQFLD 131 S ++ + LD Sbjct: 124 NRAPLGSNNQQEILD 138 >gi|20808142|ref|NP_623313.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20516731|gb|AAM24917.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 334 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD R++ R + G+ + EA EA KE+LP+ +++D + G+ F Sbjct: 30 ILIVDDDRFTRRILRDILEKEGYSIIEARDGEEAF-RLYKEMLPDMVILDVVLPGMSGFD 88 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R+ + + L + DFE+ I G GA+ +L+KP N + L + L Q Sbjct: 89 LLKILRKEEENLMLPILVLTAKGDFEEKIKGLELGADDYLVKPVNEKELVIKVNNLFQRI 148 Query: 122 K 122 + Sbjct: 149 E 149 >gi|291539027|emb|CBL12138.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD +R + R G+ + EA EA E C KE + +++D M + Sbjct: 1 MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKED-FDLIILDVMMPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ V L + I G G + +++KPF+ L ++ + Sbjct: 60 GFSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVI 116 Query: 119 QMQKSKD 125 KD Sbjct: 117 SRNNKKD 123 >gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD VR+ R G+ + A EA + E P+ +++D M L Sbjct: 2 KILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSE-RPDMVILDVMMPKLDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R G D + L + +AG AGA+ +L KPF E L R L + Sbjct: 61 EVCRELRSQ--GEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRR 118 >gi|258593741|emb|CBE70082.1| putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 460 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L+VD +R+ L G+ V A+ A E P+ ++ D M + Sbjct: 1 METILVVDDEQGIREFLTVLLEKQGYRVITASDGERALELI-AHQSPDLVISDVRMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + V + + I R GA+ ++ KPF + +R + + Sbjct: 60 GIGLLTGIRKTD--PHLPVIMVTAYASMDSTIQAMRLGAHDYITKPFRIDEIRLVVEKAL 117 Query: 119 QMQK 122 + Sbjct: 118 AKVR 121 >gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 234 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 13 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 72 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKR 128 Query: 121 QK 122 + Sbjct: 129 YQ 130 >gi|37523697|ref|NP_927074.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214702|dbj|BAC92069.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 234 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD + ++R+ + G+ V A +A + + +V+D + Sbjct: 8 QTVLVVDDAELIRETVGMALGEEGYSVVLAEDGRQALDLVRNSDKVDLIVLDLMLPHLNG 67 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ +R+ G V + L + + G GA+ +L KPF L R + + Sbjct: 68 LDLCRLLRR--EGNAVPILMLTAKGTETDRVVGLEVGADDYLPKPFGMRELIARCRAVLR 125 Query: 120 MQ 121 Sbjct: 126 RH 127 >gi|298383908|ref|ZP_06993469.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298263512|gb|EFI06375.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1385 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+V+ +R + LF + + + AT+ E + KE +P+ ++ D M Sbjct: 1130 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDTAMKE-MPDLIICDVMMPVKDG 1187 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E V++ P + L +V+ + +I G + GA+ ++LKPF L+ + L Sbjct: 1188 FECCREVKENPETCSIPFIMLTAKVEDDDIIHGLQLGADDYVLKPFTPGILKAKVSSLIN 1247 Query: 120 MQKSKDEN 127 +++ + Sbjct: 1248 GRQTLKQM 1255 >gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 246 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + + G+ A A + +K L P+ +++D + + Sbjct: 19 RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADK-LHPDLIIMDLMLPVMDG 77 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R + V L D ++ G GA+ ++ KPF+ L +R L + Sbjct: 78 IEATKRIEAQHP-IPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 135 >gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1] Length = 2476 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 2/116 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + G V A + A E E+ + +++D M + Sbjct: 2356 KKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMDG 2415 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R+ + + + + + + AGA+ +L KP + + L +R Sbjct: 2416 YETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2471 Score = 81.0 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 10/126 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LLL++ ++ + + GF AT E P+ + +D + V Sbjct: 2089 LLLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMA-NEFQPHAITLDIQLPVVDGWS 2147 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---P 118 + +++ P + V+ + G GA +L KP ++E L +L Sbjct: 2148 VLDRLKRSPRTRHIPVHVIS----VMDKHQGNSQGAFGYLTKPVSKEGLERVFNQLASFL 2203 Query: 119 QMQKSK 124 + ++ + Sbjct: 2204 ERKERR 2209 Score = 67.1 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEA-TSVCEAREFCEKELLPNYLVIDESMEGVL 60 LLLV+ + R L ++ G +V A + E + E + +VID + Sbjct: 2208 RRLLLVEDDDVQRDSLVKLLSEGGDVVVTAVATGEEVLQSLETGE-FDCVVIDLMLPDTD 2266 Query: 61 E--FIAHVRQMPLGTDVFVYYLLME 83 + V+ D+ + + Sbjct: 2267 GIRLVEEVKTQNRFRDLPIVIYTGK 2291 >gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 7/122 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + + GF +A + + P+ +++D + G Sbjct: 1 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIF-RSSRPDLVLLDLMLPGV 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E VR +DV + L + D ++ G +GA+ ++ KPF L +R Sbjct: 60 DGIEVCRQVRAE---SDVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRAR 116 Query: 118 PQ 119 + Sbjct: 117 LR 118 >gi|126650812|ref|ZP_01723028.1| two-component response regulator [Bacillus sp. B14905] gi|126592477|gb|EAZ86495.1| two-component response regulator [Bacillus sp. B14905] Length = 265 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 60/135 (44%), Gaps = 8/135 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M LLL++ + ++ + G++V AT+ E +++ + +++D + + Sbjct: 34 MKVKLLLIEDDAAIGRIVKDTMEQEGYLVTWATTGLEGLADFQEQP-FDLVLVDWMLPEM 92 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++R +DV + + + + G + GA+ ++ KPF+ E L+ + Sbjct: 93 DGLTVCQNIRWE---SDVPILMMSARKEEADKVEGLQ-GADDYIAKPFSLEELKARVASH 148 Query: 118 PQMQKSKDENQFLDA 132 + + ++ + ++ Sbjct: 149 LRRWRRYNKQEEVEE 163 >gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + ++ GF V A S A KE P+ +V+D + + F Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAA-KEHRPDLVVLDIMLPDLDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 GT V +L + I G G + ++ KPF+ E L +R + + Sbjct: 68 EVIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRST 127 Query: 123 SKDE 126 S ++ Sbjct: 128 SGEQ 131 >gi|320160069|ref|YP_004173293.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319993922|dbj|BAJ62693.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 300 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+V+ + + + F+ G+ V A +A E ++ +P+ +V+D + Sbjct: 5 RLLIVEDDVDISNMLKIYFSSQGYDVETALRGSDALEK-TRQNMPHLIVLDIMLPDINGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + V +L + + + G GA+ ++ KPF+ + LR ++ Sbjct: 64 EVCRQLRTTTRTSHIPVIFLTQKDERSDRLQGLELGADDYITKPFDIDELRLRVQNAISR 123 Query: 121 QKSKD 125 + + Sbjct: 124 SERES 128 >gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ G+ F A + E + E+ + +++D + G+ Sbjct: 1 MTRILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGA-DLVLLDVMLPGMS 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V + L + + G GA+ ++ KP++ L ++ + Sbjct: 60 GVDVCRELRSRSS---VPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVL 116 Query: 119 QMQKSKDENQ 128 + + + + Sbjct: 117 RRRGEAEAGE 126 >gi|255281933|ref|ZP_05346488.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255267606|gb|EET60811.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 237 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 9/126 (7%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+++ +R+ R L + V EA + + E E + +++D M G Sbjct: 1 MKKESILIIEDDPDIREGVRILLEGEDYTVTEAENGRKGLELLNAET--DLVILDVMMPG 58 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R++ ++V V +L + + G AG + +L KPF+ L ++ Sbjct: 59 MSGIRTCEEIRKV---SNVPVLFLTAKSQESGKLIGLMAGGDDYLPKPFSYSELLGRVKA 115 Query: 117 LPQMQK 122 L + + Sbjct: 116 LLRRYR 121 >gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] Length = 249 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD +R + GF V A A + EK P+ +V+D + + F Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEK-TSPDLVVLDVMLPDMDGFT 75 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + +L D + G G + ++ KPF E + +R + + + Sbjct: 76 VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135 Query: 124 KD 125 + Sbjct: 136 IE 137 >gi|315127978|ref|YP_004069981.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913] gi|315016492|gb|ADT69830.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF+V A + + + + +V+D + G Sbjct: 7 KVLVVDDDKRLRSLLERYLVEQGFIVRTAADSQQ-MDRLIERENFHLMVLDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + D I G GA+ ++ KPFN L ++ + + Sbjct: 66 SICRRLRQKEN--QIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123 Query: 121 QKSK 124 Q + Sbjct: 124 QSKE 127 >gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + ++ G+ V A E P+ LV+D + Sbjct: 1 MQTILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTE-RPDLLVLDLMLPDRD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R P + + L V+ I G GA+ ++ KPFN + +R + Sbjct: 60 GYSIVQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R GF V + + K + +++D + G+ Sbjct: 1 MKKILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNY-DLIILDIMLPGIS 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + ++ + ++ + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFDICKQIRAV---HNMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116 Query: 119 QMQKSKDENQF 129 + +Q Sbjct: 117 SRYERLATHQQ 127 >gi|262164517|ref|ZP_06032255.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus VM223] gi|262026897|gb|EEY45564.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus VM223] Length = 376 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 8/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + R + L + + ATS +A C K+ P+ +++D M + Sbjct: 6 TILIVDDNPENRALLAGLLKPH-YRLLVATSGAQALTICHKQK-PDLVLLDIMMPEMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P D+ V +L + E G GA ++ KP + L R ++ Sbjct: 64 EVCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLRL 123 Query: 121 QKS----KDENQFLD 131 +++ ++N+ L+ Sbjct: 124 RQAMKLLAEQNETLE 138 >gi|222110176|ref|YP_002552440.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax ebreus TPSY] gi|221729620|gb|ACM32440.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax ebreus TPSY] Length = 377 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + + L + V A S +A + + P+ L++D M G Sbjct: 21 TVLVVDDTPDNLTLMAGLLQGH-YRVKVAASGEKALVIAQSDAPPDLLLLDIMMPGIDGY 79 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + V +L D + G GA ++ KP + L + + Sbjct: 80 EVCRRLKANEATRHIPVIFLTARSDPDDEREGLALGAVDYITKPISPSILLARVATHLAL 139 Query: 121 QKSKD 125 + + D Sbjct: 140 KATAD 144 >gi|301059424|ref|ZP_07200345.1| putative Response regulator PleD [delta proteobacterium NaphS2] gi|300446460|gb|EFK10304.1| putative Response regulator PleD [delta proteobacterium NaphS2] Length = 312 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 6/133 (4%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M + +L+ + + + RK+ G+ V A + EA + ++ P ++ D M Sbjct: 1 MKNDFPILIAEDNAVSRKLMEKTLRQAGYAVVSAANGREAFKIFKERFFP-IILTDWGMP 59 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R+ P VF++ + + +I G AGA+ +L KPF+R L ++ Sbjct: 60 EMDGLELCRAIRENPTEGYVFIFLITGRDSRKDIIVGLEAGADDYLTKPFDRSELIARLK 119 Query: 116 ELPQMQKSKDENQ 128 ++ + + + Sbjct: 120 TALRILELEKSLK 132 >gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLLVD V V GF + A + EA E +K P+ +V+D + + Sbjct: 5 LLLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKH-QPDLVVLDWMLPEMSGLD 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+M V + + + I G GA+ ++ KPF+ L +R + + Sbjct: 64 VCRELRRMGS---VGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRRT 120 Query: 122 K 122 + Sbjct: 121 Q 121 >gi|217976613|ref|YP_002360760.1| response regulator receiver modulated diguanylate cyclase [Methylocella silvestris BL2] gi|217501989|gb|ACK49398.1| response regulator receiver modulated diguanylate cyclase [Methylocella silvestris BL2] Length = 469 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + K+ + + V A++ +A C + + +++D M G+ F Sbjct: 4 RVLVVDDNLPNVKLLEARLSAEYYEVVTASNGADALAICARGEC-DIVLLDVMMPGMNGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ L + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKADTLTAHIPVVMVTALDQTSDRLMGLEAGADDFLTKPIDDVALIARVRSLARL 122 Query: 121 QKSKDENQ 128 + S DE + Sbjct: 123 RLSLDELR 130 Score = 84.1 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 8/130 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61 +L+VD + V EA E + + L Sbjct: 157 RVLVVDDRRSSVETIYGALKGL-HEVELEPDALEALVEGAAGGYDLLIVSLSLEAYDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKM---IAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + ++ + + + E + G N +LL+P R L +R Sbjct: 216 LCSQIRSIEATRELPILAI---AEPEDRARTLRCLDLGVNDYLLRPIERHELVARVRTQL 272 Query: 119 QMQKSKDENQ 128 + ++ D + Sbjct: 273 RRKRYADNLR 282 >gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L++D +R++ R + GF VFEA + E + +++ P+ +++D M L Sbjct: 3 QTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGL-YVARDVKPDLILLDIMMPE-LG 60 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + L +++ I G GA+ ++ KPFN + +R + + Sbjct: 61 GLDFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRR 119 >gi|159899218|ref|YP_001545465.1| response regulator receiver modulated metal dependent phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779] gi|159892257|gb|ABX05337.1| response regulator receiver modulated metal dependent phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779] Length = 328 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD R + + V A EA + +P+ +++D +M + F Sbjct: 5 ILVVDDEARSIDTLRRVLERERYTVRIARDGVEALADIQA-CMPDLVLLDVTMPVMNGFE 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D E I G GA+ F+ KPF R L +R L +++ Sbjct: 64 VCRRLRDREETQLLPVAMLTGLNDDESRILGLEMGADDFINKPFERTVLLARIRSLLRVR 123 Query: 122 KSKDENQ 128 + +E + Sbjct: 124 RLTEELE 130 >gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25] gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25] Length = 237 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|269962482|ref|ZP_06176831.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3] gi|269832778|gb|EEZ86888.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + + + + + G+ V EA E + +++D M + Sbjct: 1 MANILLIDDDTELTSLLKEVLSFEGYEVSEANDGEAGLLAINSE--IDLVLLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKDEN 127 S +N Sbjct: 118 TSSTQKN 124 >gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586] gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 234 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD VR+ R G+ V AT EA E P+ ++D M L Sbjct: 5 KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEAL-KLIAEERPDLAILDVMMPKKDGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G D+ + L E+ +AG AGA+ +L KPF E L R L + Sbjct: 64 DVCRELRSH--GDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRR 121 >gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + L GF AT+ +A E ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCKQLRGRGA---VPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|148241355|ref|YP_001226512.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849665|emb|CAK27159.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 260 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL++ +R++ GF V +A + + + +P+ +V+D + V Sbjct: 5 ILLIEDDRDMRELVAGNLEHSGFDVQKADDGIKG-QALALQYIPDLIVLDLMLPRVDGLT 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L + + G +GA+ +L KPF E L ++ L + Sbjct: 64 LCQRLRRDDRTAQIPILMLTALAGTKDKVTGFNSGADDYLTKPFELEELLARVKALLRR 122 >gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+V+ + ++ + + G+ + EA EF ++ P+ +++D + Sbjct: 6 TTILIVEDEPSIVELVSYTLREAGWNTMAVNTTAEAWEFIQR-RTPHLILLDWMLPDQSG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L ++ +R + V L + E IAG GA+ ++ KPF+ L ++ L + Sbjct: 65 LRLLSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLR 124 Query: 120 MQKSKDENQFLDA 132 + + + A Sbjct: 125 RKSPEHAQSMMRA 137 >gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + +V + GF V T+ +KE P+ +++D + G+ Sbjct: 3 KKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEK-PDLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ +L KPF+ L ++ + + Sbjct: 62 EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 249 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+ D + +V D GF A + + E E + ++D M + Sbjct: 25 NRILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEMDG 84 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + TD V L + G R GA+ ++ KPF+ + L + + + Sbjct: 85 L-ETLRHIRERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRRE 143 Query: 122 KSKDE 126 + Sbjct: 144 NKHRQ 148 >gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 115 Query: 119 QMQKSKD 125 + K + Sbjct: 116 RRVKKAE 122 >gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM] gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM] gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ V + G+ V A EA E +KE P +++D + + Sbjct: 7 KILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEK-PTLILLDWMLPVYDGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ V + L + + + G + ++ KPF E L +R + + Sbjct: 66 TVLRRIRKKSE---VPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRR 122 Query: 121 QKSKDENQ 128 + ++ + Sbjct: 123 LEKSNKQK 130 >gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 72 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 Query: 121 QK 122 + Sbjct: 129 YQ 130 >gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 226 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ + ++ GF VF A E + + +++D + + Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSY-DIILLDVMLPKM 59 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R+ + V + L + + + G GA+ ++ KPF+ E L ++ L Sbjct: 60 SGMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKAL 116 Query: 118 PQMQK 122 + K Sbjct: 117 LRRTK 121 >gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 283 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + R + G+ V +A E+ + +V+D + G+ F Sbjct: 31 RVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQA-TEIGYDAIVLDLMLPGLDGF 89 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L D + I G AGA+ +L KPF+ L +R L + Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 147 >gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 237 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A A + + + +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LIRR 120 >gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + ++ G+ VF A+ E E +K + P+ +++D M + Sbjct: 7 QTILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQK-VSPDLILMDVMMPRMDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + +L + +AG AGA+ ++ KP L + L + Sbjct: 66 IEACQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALLR 125 Query: 120 M 120 Sbjct: 126 R 126 >gi|303246217|ref|ZP_07332497.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302492280|gb|EFL52152.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 300 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ + + ATS EA E + P+ +++D M G+ Sbjct: 5 KKILIVDDMRANTRLLAKKLSGE-YECLTATSGMEALEVVHAQ-QPDLILLDILMPGMDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ + V ++ + E G GA ++ KPF ++ +R + Sbjct: 63 FETCRQLKDDERSRKIPVIFITSLDEDEDEAKGLDLGAVDYIRKPFRMPIVKARIRNHIE 122 Query: 120 MQKSKD---ENQFLDAI 133 +++++D E F+D++ Sbjct: 123 LKRARDLLEEQAFIDSL 139 >gi|253997228|ref|YP_003049292.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gi|253983907|gb|ACT48765.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 242 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + + GF V A E + + LV+D + G Sbjct: 7 KKILVVDDDVRLRELLQRYLTEQGFTVKTANDAKE-MDSILGSDTIDLLVLDLMLPGEDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R T + + L D I G GA+ +L KPFN L + + + Sbjct: 66 LSICRRMRGNATMMPIVMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVLRRH 125 Query: 122 K 122 + Sbjct: 126 E 126 >gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|330873088|gb|EGH07237.1| sensory box protein/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 705 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR + L + G+ A S +A + E P+ +++D M G+ + Sbjct: 7 TILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVD-ERAPDLILLDIMMPGMDGY 65 Query: 63 IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + ++G AGA +L KP L +R L ++ Sbjct: 66 EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|217969666|ref|YP_002354900.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217506993|gb|ACK54004.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 256 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 6/132 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G A E + + + +V+D M G Sbjct: 7 ILIVDDDRDIRQLLADYLEKQGLRCTTAADGRE-MKAALETHRIDLIVLDLMMPGEDGLT 65 Query: 63 -IAHVRQMPL-GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++R + + L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIRAVLRR 125 Query: 121 QKSKDENQFLDA 132 ++ N LDA Sbjct: 126 TRALPPN--LDA 135 >gi|223936999|ref|ZP_03628907.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894280|gb|EEF60733.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +R+ + + A + E KE P+ ++ D M Sbjct: 1 MKKILVIEDEPEMRRNLVTILRLEQYQPLGAENGRLGLELAAKEK-PDLILCDVMMPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + +L + + G GA+ +L KP R L A+ Sbjct: 60 GYGVLKALRENAATESIPFIFLSAKGEKIDQRNGMNLGADDYLTKPVARAELLEAIVARF 119 Query: 119 QMQKSKDENQF 129 + Q+ + +F Sbjct: 120 RRQEQQARPEF 130 >gi|149920915|ref|ZP_01909376.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149818187|gb|EDM77642.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 289 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK----ELLPNYLVIDESMEG 58 LLLVD +R+V + G+ V +A + EA + E + LV+D SM Sbjct: 35 RLLLVDDDPKLREVVGYALEREGYAVTQARNGAEALDLLEATGSSSADFDLLVVDVSMPE 94 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + F R D V +L D I G G + ++ KPF+ L ++ L Sbjct: 95 IDGFDLVRRLRLRDADTPVLFLSARSDEIDRILGLELGGDDYVTKPFSTRELATRVKVLL 154 Query: 119 QMQKSKDEN 127 + + Sbjct: 155 RRVGRQRRL 163 >gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1] gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1] Length = 253 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + + GF +A E P+ +++D + G Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSK-PDLVLLDLMLPGS 88 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R +DV + L + D ++ G +GA+ ++ KPF L +R Sbjct: 89 DGIEVCRQIR---GESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRAR 145 Query: 118 PQ 119 + Sbjct: 146 LR 147 >gi|110597377|ref|ZP_01385664.1| Response regulator receiver:Sigma-54 factor, interaction region:Helix-turn-helix, Fis-type [Chlorobium ferrooxidans DSM 13031] gi|110340921|gb|EAT59392.1| Response regulator receiver:Sigma-54 factor, interaction region:Helix-turn-helix, Fis-type [Chlorobium ferrooxidans DSM 13031] Length = 451 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 2/134 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D +R+V + + G+ V A S E + P+ ++ D M G+ Sbjct: 1 MKAKILVIDDDTSLRRVLEYNLQEEGYEVETAASGEEGLMRLDL-FGPDLVITDMKMTGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + V + + + +AGA ++ KPFNR++LR +++ Q Sbjct: 60 DGMKVLKSVRERSPETLVIIITAFGSVDAAVEAMKAGAYDYITKPFNRDSLRLTVKKALQ 119 Query: 120 MQKSKDENQFLDAI 133 +EN+ L + Sbjct: 120 FSGLSEENRRLKRV 133 >gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMD-EVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|124007931|ref|ZP_01692632.1| two-component system response regulator [Microscilla marina ATCC 23134] gi|123986693|gb|EAY26483.1| two-component system response regulator [Microscilla marina ATCC 23134] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 4/127 (3%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +LLV+ + + ++ + G+ + + ++D + Sbjct: 1 MKDEIKILLVEDDNNLGQLLQEYLQIKGYPTTLRRDGEAGLDTFHTAG-FDLCILDVMLP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + F + V + +L + E I G +AGA+ ++ KPF+ E L + + Sbjct: 60 KMDGFTLAEKIREQNKKVPIIFLTAKSMKEDAIKGFKAGADDYIHKPFSMEELLLRIEAI 119 Query: 118 PQMQKSK 124 + + Sbjct: 120 MRRVGEQ 126 >gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+++ + + + G+ V A+ + E P+ +V+D + + L Sbjct: 4 RILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTE-QPDLVVVDVMLPRMGGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R+ ++ + L + +AG + GA+ +L KPF + L + L + Sbjct: 63 EVIREIRKED--PELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRR 120 Query: 121 QKSKDENQFLDAI 133 ++S+ E AI Sbjct: 121 RRSRGEGAQPKAI 133 >gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + L G++V A E+ + + L++D + G L Sbjct: 2 RILLVDDEVELTEPLSRLLTREGYIVDAAFDGTIGSEYAQAGSY-DLLILDWMLPGKTGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ G V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 61 EICQQLRRQ--GKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118 Query: 121 QKSK 124 S+ Sbjct: 119 SGSQ 122 >gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 235 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ + + GF T +A E E +++++D + + Sbjct: 3 KQILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEP-FDFILLDIMLPRLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + D + GA+ +L KPF+ L ++ + + Sbjct: 62 IEVCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRT 121 Query: 122 KSKDEN 127 + + Sbjct: 122 SKEQQE 127 >gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L++D +R + + GF F A S EA E ++ + +++D M G Sbjct: 1 MLNILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVM-DLVILDIMMPGED 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++V + +L + + + + G + +++KPF+ L M + Sbjct: 60 GFEVCSRIR---GKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 234 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ GF A+ +A P+ +++D + + Sbjct: 11 MALVLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAA-RPDLVLLDIMLPEMD 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + + + G GA+ ++ KPF+ + ++ + + Sbjct: 70 GLEVLRRIRSSG-HTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRR 128 >gi|237717067|ref|ZP_04547548.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405835|ref|ZP_06082385.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647796|ref|ZP_06725348.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806190|ref|ZP_06765037.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229443050|gb|EEO48841.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356710|gb|EEZ05800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636704|gb|EFF55170.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294446446|gb|EFG15066.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1323 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 10/141 (7%) Query: 1 MD------SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54 M +LL+V+ +R R F + V + EA C P+ ++ D Sbjct: 1045 MKDPDDRNTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDV 1102 Query: 55 SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 M G E V++ P + + V L + + E ++ G + GA+ ++ KPF+ E L+ Sbjct: 1103 MMPGIRGDELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKL 1162 Query: 113 AMRELPQMQKSKDENQFLDAI 133 ++ L + + + AI Sbjct: 1163 KVQGLIDNRNRQRQFFMRQAI 1183 >gi|190565563|ref|ZP_03018483.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|190563590|gb|EDV17555.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] Length = 511 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V R + G+ + A A E K+ +P+ ++ D SM + Sbjct: 4 RILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIM-KDWVPDLVITDISMPNMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + L ++ D + GA+ ++ KPFN L +R + Sbjct: 63 ALCKELRAR---SQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRR 119 >gi|150388841|ref|YP_001318890.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948703|gb|ABR47231.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 231 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+V+ +++ RH F V A + + +++D + Sbjct: 4 KSILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHKDIDAIILDLFLPDCNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE + VR + +D+ V L D ++ GA+ ++ KPF++ L + + Sbjct: 64 LELLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINVCLR 123 Query: 120 MQKS 123 ++ Sbjct: 124 RAQN 127 >gi|117926683|ref|YP_867300.1| response regulator receiver modulated metal dependent phosphohydrolase [Magnetococcus sp. MC-1] gi|117610439|gb|ABK45894.1| response regulator receiver modulated metal dependent phosphohydrolase [Magnetococcus sp. MC-1] Length = 346 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+VD + +V + + V A + +A E P+ +++D M G+ Sbjct: 9 TLLVVDDTPENIEVLSGVLRSC-YRVKAALNGEKALRIAAMEPRPDMILLDVMMPGMDGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P+ + V ++ + E + G + GA ++ KP + + +R + Sbjct: 68 EVCRRLKADPITAHIPVIFVTAKATVEDELEGLQLGAVDYITKPISPPIVELRVRTQLAL 127 Query: 121 QKSKDENQFLDAI 133 + E + + + Sbjct: 128 YDQQRELERMVQV 140 >gi|15642708|ref|NP_232341.1| osmolarity response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586637|ref|ZP_01676422.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80] gi|153212533|ref|ZP_01948280.1| transcriptional regulator OmpR [Vibrio cholerae 1587] gi|153802199|ref|ZP_01956785.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3] gi|153817423|ref|ZP_01970090.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457] gi|153821289|ref|ZP_01973956.1| transcriptional regulator OmpR [Vibrio cholerae B33] gi|227082828|ref|YP_002811379.1| transcriptional regulator OmpR [Vibrio cholerae M66-2] gi|229507238|ref|ZP_04396743.1| two-component system response regulator OmpR [Vibrio cholerae BX 330286] gi|229509841|ref|ZP_04399322.1| two-component system response regulator OmpR [Vibrio cholerae B33] gi|229516962|ref|ZP_04406408.1| two-component system response regulator OmpR [Vibrio cholerae RC9] gi|229527361|ref|ZP_04416753.1| two-component system response regulator OmpR [Vibrio cholerae 12129(1)] gi|229606744|ref|YP_002877392.1| osmolarity response regulator [Vibrio cholerae MJ-1236] gi|254225437|ref|ZP_04919048.1| transcriptional regulator OmpR [Vibrio cholerae V51] gi|254285903|ref|ZP_04960865.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226] gi|254851251|ref|ZP_05240601.1| transcriptional regulator OmpR [Vibrio cholerae MO10] gi|255744328|ref|ZP_05418280.1| two-component system response regulator OmpR [Vibrio cholera CIRS 101] gi|262158562|ref|ZP_06029677.1| two-component system response regulator OmpR [Vibrio cholerae INDRE 91/1] gi|262190727|ref|ZP_06048957.1| two-component system response regulator OmpR [Vibrio cholerae CT 5369-93] gi|9657311|gb|AAF95854.1| transcriptional regulator OmpR [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549196|gb|EAX59229.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80] gi|124116404|gb|EAY35224.1| transcriptional regulator OmpR [Vibrio cholerae 1587] gi|124122273|gb|EAY41016.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3] gi|125622071|gb|EAZ50394.1| transcriptional regulator OmpR [Vibrio cholerae V51] gi|126512009|gb|EAZ74603.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457] gi|126521221|gb|EAZ78444.1| transcriptional regulator OmpR [Vibrio cholerae B33] gi|150424085|gb|EDN16024.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226] gi|227010716|gb|ACP06928.1| transcriptional regulator OmpR [Vibrio cholerae M66-2] gi|229334993|gb|EEO00478.1| two-component system response regulator OmpR [Vibrio cholerae 12129(1)] gi|229346025|gb|EEO10997.1| two-component system response regulator OmpR [Vibrio cholerae RC9] gi|229353315|gb|EEO18254.1| two-component system response regulator OmpR [Vibrio cholerae B33] gi|229354743|gb|EEO19664.1| two-component system response regulator OmpR [Vibrio cholerae BX 330286] gi|229369399|gb|ACQ59822.1| two-component system response regulator OmpR [Vibrio cholerae MJ-1236] gi|254846956|gb|EET25370.1| transcriptional regulator OmpR [Vibrio cholerae MO10] gi|255737853|gb|EET93246.1| two-component system response regulator OmpR [Vibrio cholera CIRS 101] gi|262029723|gb|EEY48372.1| two-component system response regulator OmpR [Vibrio cholerae INDRE 91/1] gi|262033404|gb|EEY51912.1| two-component system response regulator OmpR [Vibrio cholerae CT 5369-93] gi|327485184|gb|AEA79591.1| Two-component system response regulator OmpR [Vibrio cholerae LMA3894-4] Length = 240 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|332306808|ref|YP_004434659.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174137|gb|AEE23391.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 244 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 5/127 (3%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + + GF V + A E + + +V+D M Sbjct: 1 MKTEKYKILLVDDDETLCALLSEFLQAEGFEVETLHTGDAATERLLQSDEFDTVVLDIMM 60 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 G+ +R + V + L D I G GA+ +L KP N L ++ Sbjct: 61 PGMSGL-DVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKA 119 Query: 117 LPQMQKS 123 + + ++ Sbjct: 120 IIRRTEN 126 >gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 242 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + GF V A EA E E E P+ +++D + Sbjct: 3 KKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVE-EYNPDLMILDLMLPKKDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D+ + + + + G GA+ ++ KPF+ L ++ + + Sbjct: 62 LEVA-REVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSR 120 >gi|299144991|ref|ZP_07038059.1| putative two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_23] gi|298515482|gb|EFI39363.1| putative two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_23] Length = 1323 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 10/141 (7%) Query: 1 MD------SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54 M +LL+V+ +R R F + V + EA C P+ ++ D Sbjct: 1045 MKDPDDRNTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDV 1102 Query: 55 SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 M G E V++ P + + V L + + E ++ G + GA+ ++ KPF+ E L+ Sbjct: 1103 MMPGIRGDELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKL 1162 Query: 113 AMRELPQMQKSKDENQFLDAI 133 ++ L + + + AI Sbjct: 1163 KVQGLIDNRNRQRQFFMRQAI 1183 >gi|296159892|ref|ZP_06842713.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295889875|gb|EFG69672.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 364 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V A A + + + P+ +++D M G+ F Sbjct: 23 VLIVDDTPDNLALLSDTLQAAGYAVLVALDGQSALQRLAR-ITPDAVLLDALMPGLDGFE 81 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + V ++ D E ++ G R G ++ KP + + Q Sbjct: 82 TCRRIKADPRNRHLPVIFMTALTDSEHVVQGFRVGGIDYVTKPVKPSEVSARIAAHVQRS 141 Query: 122 KSKDE-NQFLD 131 + + + ++ L+ Sbjct: 142 RQQRQADRVLE 152 >gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella veroralis F0319] gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella veroralis F0319] Length = 876 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D + +R R + + + V EA+ E + +P+ ++ D M + Sbjct: 635 ILIIDDNSDIRTYLRSVLSQK-YNVSEASDGKRGLELVRR-TVPDIVLSDIMMPVMDGLE 692 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + + V L E+ G GA++++ KPF+ L + L + + Sbjct: 693 FCEQLKTDKAISHIPVILLTARSMDEQRAEGYEHGADAYISKPFSLRLLLSRIENLIESR 752 Query: 122 KSKDE 126 K + Sbjct: 753 KKLSQ 757 >gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+ D + V + + G + A EA E +KE + + +++D M Sbjct: 1 MKKILICDDNEAVHETIGTYLKNDGMIYISAFDGEEALEKFKKENV-DLVILDLMMPKIF 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ V + L + + I G GA+ +++KPF+ + ++ + Sbjct: 60 GTEVCKEIRKISE---VPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIF 116 Query: 119 QMQKSKDEN 127 + SK + Sbjct: 117 RRVNSKSDL 125 >gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 237 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + F V A S EA E P+ +V+D + + Sbjct: 6 TRVLVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALA-AEFDPDLVVLDVMLPDLDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R + V V +L E I+G AGA+ ++ KPF+ E + +R + + Sbjct: 65 FQVAQRLRDVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRS 124 Query: 122 KSK 124 + + Sbjct: 125 QVE 127 >gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803] gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803] Length = 227 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 7/131 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + + G+ V A + +A + +K+ P+ +++D M Sbjct: 1 MKKKDIQILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKK-PHLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R+MP + +L + +AG AGA+ ++ KP + L + Sbjct: 60 PEMDGIEACEQIRKMPDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKV 119 Query: 115 RELPQMQKSKD 125 + L + + +D Sbjct: 120 KALLRRYREED 130 >gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 1 MPTILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFQVCKAIR--EENKKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117 Query: 119 QMQKSKDE 126 + + DE Sbjct: 118 RRIEVHDE 125 >gi|318079812|ref|ZP_07987144.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 227 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ VR+ G V A S E +P+ +V+D + G+ Sbjct: 1 MSRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAA-VPDVVVLDWMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R P V + + D ++ G AGA+ +++KP L +R + Sbjct: 60 GLEVCRRLRT-PERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42] Length = 233 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M+S+L++D + + + A E +K + +++D M + Sbjct: 1 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +++ V L + D + ++G R GA+ +L KPF+ L + L + Sbjct: 61 DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|254411332|ref|ZP_05025109.1| hypothetical protein MC7420_1823 [Microcoleus chthonoplastes PCC 7420] gi|196181833|gb|EDX76820.1| hypothetical protein MC7420_1823 [Microcoleus chthonoplastes PCC 7420] Length = 121 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+V+ S R++ L G V A+ EA E + P+ +V+D M + Sbjct: 1 MSTVLVVEDSLAQRQMISDLLKGSGLTVSVASDGVEALEHILQS-RPDVVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRLKADPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELIGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 2/131 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+D + ++ G V A E + +++D M G+ Sbjct: 3 TRVLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPY-DAVLLDVMMPGMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V + L D + G GA+ +L KPF+ L +R + + Sbjct: 62 LEVCKRIRAKT-QVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVLRRA 120 Query: 122 KSKDENQFLDA 132 + ++A Sbjct: 121 QPTAVADRMEA 131 >gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H] gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea 34H] Length = 240 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ ++ + L + D I G GA+ ++ KPFN L ++ + + Sbjct: 66 SICRRLRQNSN--NIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRR 123 Query: 121 QKSKD 125 + + Sbjct: 124 RTQEA 128 >gi|95931004|ref|ZP_01313732.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132900|gb|EAT14571.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 454 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD H++R G+ V S EA ++ + P+ + +D + G+ Sbjct: 5 RVLVVDDEHLIRWSLEQSLKKQGYHVQTVGSGEEALDYV-RSDSPDLVFLDIQLPGIDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + +D+ V + E + + GA ++ KPFN + L +R+ + Q Sbjct: 64 ETLEKIKEIDSDISVIMITALGVLETAVKAMQLGAYDYINKPFNLDELSVVLRKALETQA 123 Query: 123 SKDENQFL 130 K E + L Sbjct: 124 LKKEVEHL 131 >gi|300866717|ref|ZP_07111401.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300335317|emb|CBN56561.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 401 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + V L GF V A + A + E+ + P +++D M G+ F Sbjct: 11 ILIVDDNQNNLDVLFDLLKKSGFKVLVALNGESAIKQIER-IHPTLILLDVMMPGIDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P D+ V ++ + + G + GA ++ KPF E + + ++ Sbjct: 70 TCRRLKTNPTTQDIPVIFMTALSETVNKVQGFQVGAVDYITKPFQYEEVLSRLNTHLTIR 129 Query: 122 KSKDENQFLDA 132 + + Q +A Sbjct: 130 NLQKKLQEKNA 140 >gi|226227836|ref|YP_002761942.1| putative two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091027|dbj|BAH39472.1| putative two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 358 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L+VD +R + R L GF EA+S EA E E +P ++ D M G+ Sbjct: 10 RRCLIVDDEPSMRGILRRLMTAEGFECLEASSGSEALERLAAEPVP-LMLSDFHMPGMDG 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V + D + +GA +L KPF+ E +R + + + + Sbjct: 69 AELLRQVRERWPHTAVVMITAISDVNLAVRCLDSGALDYLTKPFSIEEVRARVAQALEKR 128 Query: 122 KSKDENQ 128 + ENQ Sbjct: 129 RLLLENQ 135 >gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 234 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 72 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 Query: 121 QK 122 + Sbjct: 129 YQ 130 >gi|190570797|ref|YP_001975155.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019676|ref|ZP_03335481.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357069|emb|CAQ54466.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994717|gb|EEB55360.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 458 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + V A EA + E P+ +++D M + F Sbjct: 4 KILVVDDIPSNVKLLEAQLKAEYYTVIVAYDGEEAIDLV-AEQQPDIILLDVMMPKMSGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ PL T + + + D + G AGA+ FL KP + L ++ L ++ Sbjct: 63 EVCKKLKNDPLTTYIPIIMVTALHDTHDRVEGINAGADDFLTKPIDETALSARIKSLVRL 122 Query: 121 QKSKDEN 127 + DE Sbjct: 123 KMIIDEL 129 Score = 81.0 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ + EA + K+ + ++ D Sbjct: 158 NILVVDEDTFQAEQIHNVLKQRFRSIKILHDPKEALKVGIKDNY-DLIISDMQFSKTDGL 216 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + L + D ++ GAN +L P + L + + Sbjct: 217 RLCSKFRSKVETRYTPILILSEDYDKSNLVKALDVGANDYLTVPLDESELIARVNLQVKR 276 Query: 121 QKSKDENQF 129 ++ +D + Sbjct: 277 KRYQDALRM 285 >gi|239827082|ref|YP_002949706.1| response regulator receiver protein [Geobacillus sp. WCH70] gi|239807375|gb|ACS24440.1| response regulator receiver protein [Geobacillus sp. WCH70] Length = 166 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD + + + G+ + S A ++ E + + +++D M + Sbjct: 1 MYTILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKV-DLVLLDIMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R +DV + + ++ G GA+ ++ KPF+ L + + + Sbjct: 60 GWETCQRIRE-FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRR 118 >gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 223 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115 Query: 119 QMQKSKD 125 + K + Sbjct: 116 RRVKKTE 122 >gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A E + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALE-AGMQGAIDLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + K+ F + V A + EA E + P+ +++D +M + Sbjct: 4 KILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQTA--PDIILLDINMPQMDGL 61 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +L V+ E + G +G + ++LKPF+ + L + + Sbjct: 62 EVCRKIR---DKISCPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKELDARITAHLKR 118 Query: 121 QKSKDEN 127 ++ +N Sbjct: 119 EQRHSQN 125 >gi|124009577|ref|ZP_01694251.1| adenylate cyclase [Microscilla marina ATCC 23134] gi|123984816|gb|EAY24791.1| adenylate cyclase [Microscilla marina ATCC 23134] Length = 362 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 58/135 (42%), Gaps = 6/135 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M ++L+VD K+ R F + +AT+ +A + +K P+ +++D M Sbjct: 1 MKATILIVDDEVTNLKILREYLTTADQEFRILQATNGKQAFDIAQKAD-PDLVIMDWMMP 59 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + +++ ++ V + + + AGA ++ KP ++ L +R Sbjct: 60 VMSGIDALKNIKTTESTQNIPVIMATAKTSAQDLKEALEAGAMDYVRKPIDKTELLARVR 119 Query: 116 ELPQMQKSKDENQFL 130 Q+ + +++ L Sbjct: 120 SAIQLSHAYKQSEEL 134 >gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + R G+ V A S EA E E P+ L++D + + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERW--EDGPDVLILDVMLPDID 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ V L + + G + GA+ ++ KPFN L ++ + + Sbjct: 58 GYELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 Query: 121 QKSKD 125 ++ Sbjct: 118 VTKRE 122 >gi|186685999|ref|YP_001869195.1| response regulator receiver, CheY [Nostoc punctiforme PCC 73102] gi|186468451|gb|ACC84252.1| response regulator receiver, CheY [Nostoc punctiforme PCC 73102] Length = 121 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+V+ S R++ L G V A+ EA E + P+ +V+D M + Sbjct: 1 MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQVAP-PDLVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1] gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1] Length = 255 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G V A A + P+ +V+D + + Sbjct: 28 RVLVVDDEASLSELLSMALRYEGCEVRSAGDGAGAV-RAARGFRPDVVVLDIMLPDMDGL 86 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 87 AVLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSG 146 Query: 123 SKDENQ 128 + + Sbjct: 147 AAQAAR 152 >gi|160883013|ref|ZP_02064016.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483] gi|156111485|gb|EDO13230.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483] Length = 1347 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ F+ + + A E +E +P+ ++ D M + Sbjct: 1093 ILVVEDNDDIREYIATSFST-NYRILTAADGKGGLEQA-QEFIPDIIISDIMMPVMDGIE 1150 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + L + L + + Sbjct: 1151 LCKQIKEDVCTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLLESR 1210 Query: 122 KSKD 125 K Sbjct: 1211 KKLA 1214 >gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ + + + V EA + +A + ++ + +++D M + Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + L + D + + G G + ++ KPF+ + L + + + Sbjct: 65 QVCKEIRK---YSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRR 121 >gi|91203464|emb|CAJ71117.1| strongly similar to sigma 54 response regulator [Candidatus Kuenenia stuttgartiensis] Length = 448 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ L G+ T+ +A E K+ ++ D M + Sbjct: 1 MKKILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + V + + + GA+ ++ KPF R+ L + ++ QM Sbjct: 61 GIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQM 120 Query: 121 QKSKDENQFLDA 132 Q+ + E L + Sbjct: 121 QRLEGEVDRLRS 132 >gi|27380234|ref|NP_771763.1| response regulator PleD [Bradyrhizobium japonicum USDA 110] gi|27353388|dbj|BAC50388.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 457 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A++ EA + + +++D M + F Sbjct: 4 RILVVDDVPANVKLLEARLSAEYFDVMTASNGTEALAISRRAEC-DIILLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKTDPATHHIPVVMVTALDSPSDRNRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 73.3 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 8/114 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + L V + EA + +V +D + L Sbjct: 157 RILLVDDRQSSYERLASLLAAE-HTVDVEPNPTEALFHAAEGNYDLLIVSLDLNNFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEK---MIAGARAGANSFLLKPFNRETLRF 112 + R + V + + D E ++ G G N +LL+P ++ L Sbjct: 216 LCSQARSLERTRHVPILAI---ADPENSTRLLRGLEIGVNDYLLRPIDKTELLA 266 >gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] Length = 233 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + V + F G+ + E KE + L++D + + Sbjct: 1 MK-ILVVEDNESVCSMLEMFFMKEGYHGVFVHDGQQGFEHFNKERW-DLLIVDWMLPIMD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++ V + L + + G GA+ ++ KPF+ TL ++ + Sbjct: 59 GVTLCRKIRELSK---VPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVT 115 Query: 119 QMQKSK 124 + +++ Sbjct: 116 RRFQAE 121 >gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A EA N +++D M + Sbjct: 1 MK-ILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q+ +D+ + L + I G +GA+ ++ KPFN + ++ L + Sbjct: 60 GM-EVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDEN 127 + + N Sbjct: 119 TQGEVTN 125 >gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1210 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + S + R+V + G+ V A + +A E++ + +++D M + Sbjct: 934 RILLAEDSPVNREVAVGMLEQLGYEVEVAENGRQALAAAERDH-FDIVLMDCQMPEMDGL 992 Query: 63 IA--HVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 A +R+ + + L AG + +L KPF + L+ +R+ Sbjct: 993 TATGEIRRRETASGRRRLPIIALTAHAMQGDREHCLTAGMDDYLSKPFTQMQLQGIVRKW 1052 Query: 118 PQMQK 122 + Sbjct: 1053 LSHHE 1057 >gi|297537697|ref|YP_003673466.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297257044|gb|ADI28889.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 230 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 56/124 (45%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+V+ ++++ G A SV A+ +E +P+ +++D + G+ L Sbjct: 4 NILVVEDEPAIQELLALNITQAGHNAMRALSVEIAQNLM-RETIPDLILLDWMLPGMNGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF ++ L + + L D + G GA+ ++ KPF+ L ++ + + Sbjct: 63 EFARLLKSDNLTKTIPIIMLTARGDEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 RAPQ 126 >gi|294777579|ref|ZP_06743030.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294448647|gb|EFG17196.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1357 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + +R LF + V+EA + E + +P+ ++ D M Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGVDVAMS-KIPDLIISDIMMPVKDG 1162 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ P + + L + + ++ ++ G + +++KPFN E L+ +R L Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1223 QRERLKR 1229 >gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] Length = 235 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + + V EA ++ + L++D + + F Sbjct: 9 RILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEY-DVLILDIMLPKLDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V +L + + G GA+ +L+KPF+ E L +R + + Sbjct: 68 EVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRK 125 >gi|229916985|ref|YP_002885631.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468414|gb|ACQ70186.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + R G+ EA+ A + E P+ +++D M V Sbjct: 1 MK-ILIVDDEEKMRHLIRLFLESDGYFCIEASDARSALDKI--EERPDLVLLDIMMPEVD 57 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ M + V L D E I G AGA+ ++ KPF+ L +R + Sbjct: 58 GISLCRQLKTMD--PALPVVLLTARSDNETTIQGLDAGADDYVTKPFDGNVLLARIRAVL 115 Query: 119 QMQK 122 + + Sbjct: 116 RRTR 119 >gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++++VD +R++ G+ A A ++ +P+ +++D M G+ Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLI-QDTVPDLILLDIEMPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V +L + +A GA+ ++ KPF+ E L ++ Sbjct: 60 GLEVCREIRSQLS---IPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANI 116 Query: 119 QM 120 +M Sbjct: 117 RM 118 >gi|160888763|ref|ZP_02069766.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492] gi|156861662|gb|EDO55093.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492] Length = 1390 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R+ R ++ + + ++ EA KE +PN ++ D M + Sbjct: 1127 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIV-KEYMPNLVISDIMMPEMRG 1184 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + + L + +I G ++GA+ +++KPFN LR + L Sbjct: 1185 DELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLT 1244 Query: 120 MQKS 123 + Sbjct: 1245 NRAL 1248 >gi|160884751|ref|ZP_02065754.1| hypothetical protein BACOVA_02740 [Bacteroides ovatus ATCC 8483] gi|156109786|gb|EDO11531.1| hypothetical protein BACOVA_02740 [Bacteroides ovatus ATCC 8483] Length = 1323 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 10/141 (7%) Query: 1 MD------SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54 M +LL+V+ +R R F + V + EA C P+ ++ D Sbjct: 1045 MKDPDDRNTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDV 1102 Query: 55 SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 M G E V++ P + + V L + + E ++ G + GA+ ++ KPF+ E L+ Sbjct: 1103 MMPGIRGDELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKL 1162 Query: 113 AMRELPQMQKSKDENQFLDAI 133 ++ L + + + AI Sbjct: 1163 KVQGLIDNRNRQRQFFMRQAI 1183 >gi|298479885|ref|ZP_06998084.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298273694|gb|EFI15256.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1372 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F D F V A + E ++ +P+ +V D M + Sbjct: 1113 LLIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 +++ + + V L + + G GA+S+L KPF+ LR + L + Sbjct: 1171 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230 Query: 121 QKSKDE 126 +K + Sbjct: 1231 KKLIAQ 1236 >gi|294674733|ref|YP_003575349.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] gi|294472402|gb|ADE81791.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] Length = 1342 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+V+ + + K LF + V A +A + + +V D M + Sbjct: 1088 TLLVVEDNEDMLKFLEQLF-AADYNVITAPDGQQAWDIAISRSDIDLVVSDVMMPVMTGA 1146 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + D E + G R GA++++LKPF+ E+L + L ++ Sbjct: 1147 ELCNMIKGNMSTSHIPVILLTAKGDPEDVKDGYRNGADAYVLKPFDPESLSLQISNLLKL 1206 Query: 121 QKSKDE 126 +++ + Sbjct: 1207 IQNRQQ 1212 >gi|293372359|ref|ZP_06618743.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292632542|gb|EFF51136.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1372 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F D F V A + E ++ +P+ +V D M + Sbjct: 1113 LLIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGII 1170 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 +++ + + V L + + G GA+S+L KPF+ LR + L + Sbjct: 1171 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230 Query: 121 QKSKDE 126 +K + Sbjct: 1231 KKLIAQ 1236 >gi|293373752|ref|ZP_06620098.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292631242|gb|EFF49874.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1323 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++LL+V+ +R R F + V + EA C P+ ++ D M G Sbjct: 1052 NTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDVMMPGIRG 1109 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E V++ P + + V L + + E ++ G + GA+ ++ KPF+ E L+ ++ L Sbjct: 1110 DELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKLKVQGLID 1169 Query: 120 MQKSKDENQFLDAI 133 + + + AI Sbjct: 1170 NRNRQRQFFMRQAI 1183 >gi|262195305|ref|YP_003266514.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078652|gb|ACY14621.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 2107 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + V A + EA + ++ + +++D M + Sbjct: 1987 KKILVVDDDVRNIFAITTILEQHLMDVVYAENGREALDQLDRNPDIDIVLMDIMMPEMDG 2046 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V L + AGA+ ++ KP + + L +R Sbjct: 2047 YEATRRIRSDGRYGRLPVIALTAKAMKGDRDKCIEAGASDYITKPVDPDQLISLLRVWLY 2106 Query: 120 M 120 Sbjct: 2107 R 2107 Score = 86.4 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 9/123 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ + + + GF A S E K P+ + +D + + Sbjct: 1720 LLIIEDDDVFARTLLDAVRERGFRGLVALSGNEGL-AVAKSYKPDAITLDLRLPDMDGWV 1778 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA---MRELP 118 + ++ + V+ + D G GA +FL KP E L A + Sbjct: 1779 VLDRLKHDSETGHIPVHIISAAADE---RRGLENGALAFLNKPVGPEALDVALSDIESFL 1835 Query: 119 QMQ 121 + Sbjct: 1836 DRR 1838 Score = 71.4 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + R+ L + S A + E + ++ID + + Sbjct: 1840 KRVLIVEDDDVQRRALVELIDGEDVSTEAVGSAEAALQALESGT-FDCMIIDLKLPEMSG 1898 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E I ++ P + V + E R A + ++K + E L Sbjct: 1899 DELIEKFKERPAFRRMPVIVYTGKELSEGDEISLRRLAETIIVKDVRSPERLLA 1952 >gi|237721944|ref|ZP_04552425.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_2_4] gi|229448813|gb|EEO54604.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_2_4] Length = 1323 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++LL+V+ +R R F + V + EA C P+ ++ D M G Sbjct: 1052 NTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDVMMPGIRG 1109 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E V++ P + + V L + + E ++ G + GA+ ++ KPF+ E L+ ++ L Sbjct: 1110 DELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKLKVQGLID 1169 Query: 120 MQKSKDENQFLDAI 133 + + + AI Sbjct: 1170 NRNRQRQFFMRQAI 1183 >gi|237721900|ref|ZP_04552381.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448769|gb|EEO54560.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1372 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F D F V A + E ++ +P+ +V D M + Sbjct: 1113 LLIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 +++ + + V L + + G GA+S+L KPF+ LR + L + Sbjct: 1171 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230 Query: 121 QKSKDE 126 +K + Sbjct: 1231 KKLIAQ 1236 >gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 227 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V A R+ + + L++D + L Sbjct: 2 RILLVDDEVELTDPLSRVLKREGYEVDVAYEGQSGRQLAMQSDY-DLLILDWMLPHQSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R G V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 61 ELCQQLRSQ--GKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRR 118 Query: 121 QKSKDEN 127 + + N Sbjct: 119 SAATETN 125 >gi|189464649|ref|ZP_03013434.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM 17393] gi|189436923|gb|EDV05908.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM 17393] Length = 1344 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ + F D + V A E E + +PN +V D M + Sbjct: 1094 VLVVEDNSDIREYIKSSFADI-YEVITAKDGQEGWE-LTQARIPNVIVSDIMMPIMDGVE 1151 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V++ + + V L + G +GA+++L KPF+ + L + L + + Sbjct: 1152 LCKKVKEDMRTSHIPVILLTAKDSLHDKEEGYASGADAYLTKPFSAKLLHSCINNLLETR 1211 Query: 122 KSKDENQFLDAI 133 K L + Sbjct: 1212 KKIASQLLLADV 1223 >gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ +R+ + GF + EA S + E E P+ V+D + G+ F Sbjct: 4 KVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNK-PDVAVLDIMLPGIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + L + I G GA+ +L KPFN L ++ + + Sbjct: 63 EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 122 Query: 123 SKDENQFL 130 K N + Sbjct: 123 QKQNNSQI 130 >gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759] gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759] gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 233 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ G+ V++ + EA C K+ + ++D + + Sbjct: 3 KKILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAM-KCIKQSQIDLAILDIMLPDIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + L +++ I G GA+ ++ KPFN + ++ + Sbjct: 62 FRLCQKIREKFYF---PIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQLR 118 Query: 120 MQKS 123 +S Sbjct: 119 RYQS 122 >gi|160884678|ref|ZP_02065681.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483] gi|156109713|gb|EDO11458.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483] Length = 1372 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F D F V A + E ++ +P+ +V D M + Sbjct: 1113 LLIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 +++ + + V L + + G GA+S+L KPF+ LR + L + Sbjct: 1171 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230 Query: 121 QKSKDE 126 +K + Sbjct: 1231 KKLIAQ 1236 >gi|315224472|ref|ZP_07866299.1| DNA-binding response regulator/sensor histidine kinase [Capnocytophaga ochracea F0287] gi|314945493|gb|EFS97515.1| DNA-binding response regulator/sensor histidine kinase [Capnocytophaga ochracea F0287] Length = 934 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + +R+ R++ +D + + EA + E E +K LP+ ++ D M Sbjct: 686 TVLIVEDNEDMRQFIRYILSD-DYNLIEAENGEEGFEVAKKH-LPDVVISDVMMPKTDGF 743 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L E+ G +GA++++ KPFN + L+ +R+L + Sbjct: 744 DLCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLIEN 803 Query: 121 QKSKDE 126 +K E Sbjct: 804 RKKIRE 809 >gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25] gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25] Length = 239 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|224540766|ref|ZP_03681305.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM 14838] gi|224517633|gb|EEF86738.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM 14838] Length = 1377 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R ++ +M E ++ EA P+ ++ D M + Sbjct: 1135 RHVLVVEDDEEIRHYICRELSNDFYM-TECSNGKEALASILSHT-PDLIISDVMMPEMDG 1192 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + + L E + G GA+++L+KPF+ E LR + L + Sbjct: 1193 LTLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNLIR 1252 Query: 120 MQKSKD 125 ++ Sbjct: 1253 RREQLR 1258 >gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 234 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 8/131 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V + G+ V+ A + +A E P+ +++D + + Sbjct: 6 RKILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGY-NEFNPDLIILDLMLPDISG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R++ L V + L +V +++I G GA+ ++LKPF+ + L + + + Sbjct: 65 EEICKRIRKISL---VPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLR 121 Query: 120 M--QKSKDENQ 128 ++S ++N+ Sbjct: 122 RTVKESSEDNK 132 >gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 236 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L++V+ + + + G+ V A+S E E K ++ID + + F Sbjct: 4 RLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDF-KTYEFALVMIDIMLPEMDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + D+ V + + + G + GA+ ++ KPF+ + + + K Sbjct: 63 TLCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRRYK 122 Query: 123 SKDENQFLDAI 133 D ++ I Sbjct: 123 KVDRESAVNGI 133 >gi|300868772|ref|ZP_07113383.1| putative chemotaxis protein [Oscillatoria sp. PCC 6506] gi|300333333|emb|CBN58575.1| putative chemotaxis protein [Oscillatoria sp. PCC 6506] Length = 121 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++++VD H R++ +L G V EA+ EA E E P+ +++D M G+ Sbjct: 1 MKTVIVVDDQHSHREMISNLLKGSGINVIEASDGVEAIEKIEVNC-PDLIILDIVMPGMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ PL ++ + + ++ + G + GA++++ KPF L +++ Sbjct: 60 GFEVCRRLKNNPLTQNIPIVFCSVKGEEFDRYWGIKQGADAYIAKPFGPRELVGTVKQFL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|302519462|ref|ZP_07271804.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428357|gb|EFL00173.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 227 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ VR+ G V A S E +P+ +V+D + G+ Sbjct: 1 MFRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAA-VPDVVVLDWMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R P V + + D ++ G AGA+ +++KP L +R + Sbjct: 60 GLEVCRRLRT-PERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 225 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A E E+ + ++D M + F Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIE-EVKVDMAILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A A E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K + Sbjct: 116 RRVKKAE 122 >gi|189465215|ref|ZP_03014000.1| hypothetical protein BACINT_01560 [Bacteroides intestinalis DSM 17393] gi|189437489|gb|EDV06474.1| hypothetical protein BACINT_01560 [Bacteroides intestinalis DSM 17393] Length = 1348 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++LLV+ + R L + + V EA E E P+ ++ D M L Sbjct: 1098 TILLVEDNKEFRHYMFELLSKK-YNVLEAGDGEEG-ERIATTKFPDLIISDIMMPKVDGL 1155 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L E + G +GA+ ++ KPFN + L +++L Sbjct: 1156 ELCKRIKSNIQVSHIPVILLTARSTDESKLFGYESGADEYISKPFNLDILLLRIQKLINE 1215 Query: 121 QKSKDE 126 +K++ Sbjct: 1216 EKARQR 1221 >gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + +V GF A + EA + + P+ +++D + + Sbjct: 7 KVLIVDDDENICEVIDMYLKSVGFNTKIALNGKEA-KMLYMDYNPDLVLLDMMIPQVDGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R+ V + + D + GA+ +++KPF + L ++ + + Sbjct: 66 DVLKWIRKQGER---PVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122 >gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium modesticaldum Ice1] gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium modesticaldum Ice1] Length = 853 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ D +R + R G+ V EA A E E+ P+ +++D M + F Sbjct: 8 ILVADDDPAMRFMLRRALEKDGYAVIEAEDGAAALEAYEQAE-PDIVLMDVLMPVLDGFA 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A ++ +P V + D + ++GA ++ KP LR +R L Q Q Sbjct: 67 LCAQLQTLPRHRRAPVLMITGLDDDASVEKAYQSGATDYITKPIQWAVLRQRVRRLLQAQ 126 Query: 122 KSKDENQFLD 131 ++ + + Sbjct: 127 HTEKALKARE 136 >gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 4 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 62 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 63 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 119 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 120 LRRSEEPAPEQL 131 >gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 237 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ + K+ + + VF+A E E E E + +++D + + Sbjct: 5 KILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESED-IDLVLLDLMIPKISG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ ++V V + +V + ++ G + GA+ ++ KPF+ + L ++ + + + Sbjct: 63 EDLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122 >gi|299147431|ref|ZP_07040496.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298514709|gb|EFI38593.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1353 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+V+ + R+ F + EA E E P+ ++ D M Sbjct: 1100 KTILIVEDNVEFRRFLVEQLIGQ-FNILEAGDGAEGEEVAI-HKSPDLIISDMMMPKVDG 1157 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++ + + + L + E I +AGA+S++ KPFN + L + L + Sbjct: 1158 LEMCVRIKNNIQTSHIPIILLTARISDEARIESYKAGADSYISKPFNYDILLTRINMLLE 1217 Query: 120 MQKSKDE 126 Q+ + E Sbjct: 1218 QQEKRKE 1224 >gi|270296014|ref|ZP_06202214.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273418|gb|EFA19280.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1310 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLL + +R+ + + V +A E +E+ P+ ++ D M E Sbjct: 1068 LLLAEDDADMREYLVDSLSSE-YKVVAVPDGGKALETA-REINPDIIISDIVMPVLEGDE 1125 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L + E +I G AGAN +++KPF+ L+ +R + Q + Sbjct: 1126 LCRILKSSVETSHIPIILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1185 Query: 122 KSKDE 126 + E Sbjct: 1186 QHLRE 1190 >gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196] gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291] gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196] gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291] Length = 244 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M+S+L++D + + + A E +K + +++D M + Sbjct: 12 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDI 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +++ V L + D + ++G R GA+ +L KPF+ L + L + Sbjct: 72 DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 130 Query: 120 M 120 Sbjct: 131 R 131 >gi|188590123|ref|YP_001920314.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E3 str. Alaska E43] gi|251780101|ref|ZP_04823021.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500404|gb|ACD53540.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E3 str. Alaska E43] gi|243084416|gb|EES50306.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 235 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + + A + A +P+ +++D + Sbjct: 1 MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVS-YVPDIVILDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I ++++ +++ + + + I GA+ +L KPF+ E L +R Sbjct: 60 MDG-IEIIKKIRTWSNIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|160885560|ref|ZP_02066563.1| hypothetical protein BACOVA_03562 [Bacteroides ovatus ATCC 8483] gi|156109182|gb|EDO10927.1| hypothetical protein BACOVA_03562 [Bacteroides ovatus ATCC 8483] Length = 1353 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+V+ + R+ F + EA E E P+ ++ D M Sbjct: 1100 KTILIVEDNVEFRRFLVEQLIGQ-FNILEAGDGAEGEEVAI-HKSPDLIISDMMMPKVDG 1157 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++ + + + L + E I +AGA+S++ KPFN + L + L + Sbjct: 1158 LEMCVRIKNNIQTSHIPIILLTARISDEARIESYKAGADSYISKPFNYDILLTRINMLLE 1217 Query: 120 MQKSKDE 126 Q+ + E Sbjct: 1218 QQEKRKE 1224 >gi|29349644|ref|NP_813147.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341554|gb|AAO79341.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1385 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+V+ +R + LF + + + AT+ E + KE +P+ ++ D M Sbjct: 1130 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDTAMKE-MPDLIICDVMMPVKDG 1187 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E V++ P + L +V+ + +I G + GA+ ++LKPF L+ + L Sbjct: 1188 FECCREVKENPETCSIPFIMLTAKVEDDDIIHGLQLGADDYVLKPFTPGILKAKVSSLIN 1247 Query: 120 MQKSKDEN 127 +++ + Sbjct: 1248 GRQTLKQM 1255 >gi|87121478|ref|ZP_01077367.1| DNA-binding response regulator [Marinomonas sp. MED121] gi|86163321|gb|EAQ64597.1| DNA-binding response regulator [Marinomonas sp. MED121] Length = 239 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G V A R+ + + +V+D M G Sbjct: 6 RVLVVDDHLEIRTLLAEYLHKHGMRVETADGGESMRQQLSRAS-FDVIVLDLMMPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + V L + I G GA+ ++ KPF+ L ++ L + K Sbjct: 65 TLC-RNIREKSAIPVIMLTAMGEEADRIIGIEMGADDYITKPFSARELLARIKALVKRSK 123 Query: 123 S 123 S Sbjct: 124 S 124 >gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ + G+ A+ EA + +++D M + Sbjct: 1 MK-ILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTNPDTSLMILDVMMPNMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + + L + I G GA+ ++ KPFN + +R L + Sbjct: 60 GL-DVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 ++ +++ Sbjct: 119 AENAVQDK 126 >gi|312130582|ref|YP_003997922.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907128|gb|ADQ17569.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1365 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + +R+V + + EA + E + + LLP+ ++ D M + Sbjct: 1107 VLIVEDNEEIRQVISQSLEKT-YAINEAANGQEGWQKV-RSLLPDLVITDIMMPVEDGIT 1164 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +++Q + V L E +I G ++G++ +L KPF+ E L +R + + + Sbjct: 1165 LLRNIKQNLETNHIPVLLLTARTAMESVIEGLQSGSDDYLTKPFHPEVLSLKIRNILESR 1224 Query: 122 K 122 + Sbjct: 1225 E 1225 >gi|307545329|ref|YP_003897808.1| response regulator receiver protein [Halomonas elongata DSM 2581] gi|307217353|emb|CBV42623.1| response regulator receiver protein [Halomonas elongata DSM 2581] Length = 123 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + L GF V A A + E P+ +++D S+ G Sbjct: 1 MARVLVVDDEPNIVLSLEFLMEQAGFEVTTAEDGETALRLID-EGAPDLVLLDISLPGIG 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R P + + L + G GA+ ++ KPF+ TL +R L Sbjct: 60 GFEVLERLRSDPAHRHLSIIMLTAHGREVEREKGLALGADDYITKPFSTRTLVEKVRALL 119 >gi|239993573|ref|ZP_04714097.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii ATCC 27126] Length = 237 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L++D + ++ + G+ V E + +++D M + Sbjct: 8 QSILVIDDDLELTEMLSTYLSSMGYQVQVRNDGEEGLSEAVSGRHYDLILLDVMMPKMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++++ + V L D I G GA+ +L KPFN L ++ + + Sbjct: 68 F-DVLKKLRVSHSTPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRH 126 Query: 122 KSKD 125 Sbjct: 127 NLSS 130 >gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ R+ G+ V A EA + P+ +++D + Sbjct: 4 KKILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEA-TRLMQTESPDLVLLDIMLPKKDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R + ++V + L + + G GA+ ++ KPF+ + ++ + Sbjct: 63 FAVC-RDIRRVSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRRT 121 Query: 122 KSKD 125 ++ Sbjct: 122 QAAK 125 >gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 250 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 10/127 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC------EKELLPNYLVIDESM 56 +L+V+ ++R + + G+ + A A E E E + LV+D + Sbjct: 20 RILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLML 79 Query: 57 E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 L+ +R G + + L +V + G GA+ +L KPF+ L Sbjct: 80 PQVNGLDICRLLR--YQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQ 121 R L + Q Sbjct: 138 RALLRRQ 144 >gi|218780373|ref|YP_002431691.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218761757|gb|ACL04223.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 463 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M LL+VD + + + D +V A S EA E +E + ++ D M Sbjct: 1 MKRRLLIVDDEPDMLHLLKRSLEPDLNCVVETAASGLEAMEILGQE-RFDLILADIKMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + D + + + + + GA F+ KPF+ E L + + Sbjct: 60 MDGLELLEKVQAQYPDQTMVMMTGHGSIDVAVQAIQKGAYDFVTKPFDHEALVVRLEKAL 119 Query: 119 QMQKSKDENQFL 130 + K EN+ L Sbjct: 120 ERSKLIAENRRL 131 >gi|330996468|ref|ZP_08320350.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329573024|gb|EGG54643.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1328 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+V+ +R + + F+V A++ +A + KE + ++ D M + E Sbjct: 1056 ILIVEDEDSIRNFMKERLSPL-FIVETASNGKDALDTIRKEH-IDLVISDVMMPEMNGYE 1113 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + +L + D + + G + GA +++ KPF+ + L+ + L + Sbjct: 1114 LCTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLLNNR 1173 Query: 122 KSKDE 126 + + E Sbjct: 1174 QKERE 1178 >gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 233 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + ++ + GF V +A ++ ++D M + + Sbjct: 9 TILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQL-RQKEFQLAILDWDMPLMSGY 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + + + + + E + AGA+ +L KPFN L +R L + Sbjct: 68 DVCQRLRDTGNTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRRNS 127 Query: 123 SKDENQFL 130 + + L Sbjct: 128 NTSNKKAL 135 >gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] Length = 221 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + V EA +F + ++ D M V Sbjct: 1 MK-ILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEY-DLIITDIMMPNVD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + V L + E I G +GA+ +++KPF + L +R L + Sbjct: 59 GYEFIARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118 >gi|329963860|ref|ZP_08301202.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328527113|gb|EGF54119.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 1342 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 5/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L++D + + + + ++ + V AT+ E + +KE P+ ++ D M G +E Sbjct: 1085 ILVIDDNAEILTLLQEALSE--YKVVTATNSEEGLDMLKKE-YPDLIITDVMMPGTDGIE 1141 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + + L + E+ I G +GA++++ KPFN L+ + L + Sbjct: 1142 LTRQIKQNKHTMHIPLVILSAKNTNEEKIEGLDSGADAYIGKPFNLNYLKAIVSRLIENY 1201 Query: 122 KSKDE 126 E Sbjct: 1202 SRIKE 1206 >gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61 +LLV+ + K + N ++V A + EA E+ E + + D + G+ Sbjct: 2 RVLLVEDEPDLGKAIKRTLNQEKYIVDWAQNGNEAWEYLESQWTQYTLAIFDWLLPGLSG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V L E +AG AGA+ +L+KPF L +R L + Sbjct: 62 LELCQRLRAKNNHLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRALQRRS 121 Query: 122 KSKDENQF 129 Q Sbjct: 122 PQLQPEQL 129 >gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 220 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R + + G+ V EA EA E + +V+D + Sbjct: 1 MKKILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFY-EKPFDLVVLDIMLPKKD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + V V + + + G GA+ ++ KPF+ + ++ + Sbjct: 60 GWSICREIKE---YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTIL 116 Query: 119 QMQ 121 + + Sbjct: 117 KNK 119 >gi|256378007|ref|YP_003101667.1| multi-sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] gi|255922310|gb|ACU37821.1| multi-sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] Length = 1370 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +++ D + +R+ L G+ V A E P+ +V D M L Sbjct: 609 RVVVADDNADMREYLTRLLRSAGYRVRAVADGRAALEEVRA-RTPDLVVTDVMMPRLDGL 667 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R V V L E I G AGA+ +L+KPF L +R ++ Sbjct: 668 GLVAALRADQRTAGVPVVLLSARAGQEASIEGLAAGADDYLVKPFAAADLLARVRANVEL 727 Query: 121 QKSKDENQF 129 + +D + Sbjct: 728 ARLRDHHAR 736 >gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L+ D + + + + GF A EA + K P L++D M Sbjct: 1 MSKYILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIFNK-YSPLLLLLDVMMPKK 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +RQ ++V + + + + I G GA+ +++KPF+ + +R + Sbjct: 60 DGFEVCREIRQN---SNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAI 116 Query: 118 PQMQKSKDEN 127 + DE+ Sbjct: 117 LRRVDISDED 126 >gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ K R G V A EA +E N +++D + + Sbjct: 3 RKVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEAL-KLIRENKYNIILLDVMLPKLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VR+ +DV + L + + I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FQVCQQVRE---FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 MQKSKDENQ 128 + + E + Sbjct: 119 RTERQTEER 127 >gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 225 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L++D + + R GF V A E P+ +V+D M G Sbjct: 4 KILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAA-WKPDLVVLDVLMPGTDGW 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R G+ + + L + + + G GA+ +L+KPF E L +R L + Sbjct: 63 EVCRRLRA---GSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRR 119 Query: 121 QKSKD 125 + D Sbjct: 120 SRQAD 124 >gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 225 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ A S EA E ++++D M + Sbjct: 1 MVDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFILLDIMMRKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + +I G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 RRTNQHAQIQ 126 >gi|331086531|ref|ZP_08335610.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410589|gb|EGG90017.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 223 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ + A A + P+ +++D +M + Sbjct: 1 MYKILVVDDDIDMITMVQDYLYLKGYEIMSAFDGEMALNKIK--FAPDIILLDVNMPQMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ L + + +L + E I G G + ++LKPF+ + L ++ Sbjct: 59 GFEVCMKIRELVS-CPIIFLTAREEEEDRIKGLEIGGDDYILKPFSLKELEARIKAHLNR 117 Query: 121 QKSKDENQFLD 131 ++ + + Sbjct: 118 EERARKKSVIQ 128 >gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL++ + +V + GF V A+ + P+ +++D ++ G+ Sbjct: 1 MSTVLLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHK-PDLVLLDLNLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ +DV + + V+ + G GA+ +++KP++ L +R + + Sbjct: 60 GLDVA-REIRRQSDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRR 118 >gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] Length = 248 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ V A + A +E+ P+ +V+D + Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSA-QEIDPDVIVLDIMLPDFDGL 76 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L + E +AG AG + ++ KPF+ E + +R L + Sbjct: 77 EVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136 Query: 123 SKDE 126 + +E Sbjct: 137 ASEE 140 >gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122] gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122] Length = 238 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 7/123 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL D + +V L G+ V A EA + ++D M L Sbjct: 12 RILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALAR--HPFDLAILDVMMPKASGL 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R ++ + +L +AG AG + +L+KPF+ L ++ + + Sbjct: 70 EVCERLRLS---SNAPILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRR 126 Query: 121 QKS 123 + Sbjct: 127 YRQ 129 >gi|256819065|ref|YP_003140344.1| two component transcriptional regulator, AraC family [Capnocytophaga ochracea DSM 7271] gi|256580648|gb|ACU91783.1| two component transcriptional regulator, AraC family [Capnocytophaga ochracea DSM 7271] Length = 934 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + +R+ R++ +D + + EA + E E +K LP+ ++ D M Sbjct: 686 TVLIVEDNEDMRQFIRYILSD-DYNLIEAENGEEGFEVAKKH-LPDVVISDVMMPKTDGF 743 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L E+ G +GA++++ KPFN + L+ +R+L + Sbjct: 744 DLCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLIEN 803 Query: 121 QKSKDE 126 +K E Sbjct: 804 RKKIRE 809 >gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Blautia hansenii DSM 20583] gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Blautia hansenii DSM 20583] Length = 235 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL---PNYLVIDESME 57 M +L++D + + + A S E + ++ + +++D M Sbjct: 1 MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + F ++++ +++ V L + + E + G R GA+ +L KPF+ L + L Sbjct: 61 YMNGF-QVLKKIREVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSL 119 Query: 118 PQM 120 + Sbjct: 120 IRR 122 >gi|212691087|ref|ZP_03299215.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855] gi|212666319|gb|EEB26891.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855] Length = 1308 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 4/119 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + R+ + + VFEA++ EA E ++ + ++ D M + Sbjct: 1066 SVLVVEDNDDFRRFLVGCLKEH-YQVFEASNGKEALEILSQQSV-QMVISDVMMPVMDGL 1123 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 V+ + + V L E ++ G R GA+ ++ KPFN + L +++L Q Sbjct: 1124 ELCHAVKTDIRFSHIPVILLTARTAEEHVLGGLREGADDYITKPFNLDILLLRIQKLLQ 1182 >gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + K D ++V A + + + + +++D + + Sbjct: 2 RILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWD-FIQSFSYDLIILDVMLPKLNGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L + G AGA+ +++KPF+ L +R L + Sbjct: 61 DLCQRLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRR 118 >gi|150024463|ref|YP_001295289.1| two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] gi|149771004|emb|CAL42471.1| Two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 7/131 (5%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD V ++ + + G+ +F A + EA + +K P+ +++D M Sbjct: 1 MKKKEIRILLVDDEPDVLEIVGYNLSQEGYQIFTAENGKEAVQKAKKHN-PHLIIMDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R++P +V + +L + +AG AGA+ ++ KP + L + Sbjct: 60 PEMDGMEACEIIRKVPELNNVIITFLTARNEDYSQVAGFDAGADDYIAKPIKPKLLVSKV 119 Query: 115 RELPQMQKSKD 125 + L + K ++ Sbjct: 120 KALLRRIKEEE 130 >gi|108763454|ref|YP_632339.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108467334|gb|ABF92519.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ R GF V EA A ++ LP +V+D M + Sbjct: 6 TVLVVDDDPHLREIVRFALEQGGFRVDEAADGRAALTQVDRG-LPALIVLDIMMPELDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ ++ + +L D I G G + +L KPF+ L ++ + + + Sbjct: 65 AVC-REVRRKHELPIVFLSSRDDEVDRILGLELGGDDYLTKPFSPRELVARVKAVLRRAR 123 >gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp. CNPT3] gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp. CNPT3] Length = 242 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ + + V A + E ++ K + +++D + G Sbjct: 4 KHLLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKL-KTAQIDLIILDLMLPGEDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + +++ V L + I G GA+ ++ KPFN L ++ + + Sbjct: 63 LTLC-RNLRAQSNIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRR 120 >gi|78222609|ref|YP_384356.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193864|gb|ABB31631.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 458 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ L G+ V +A +A EF + + ++ D M G+ Sbjct: 4 RILVVDDELSMREFLAILLKREGYAVDQADCAEKALEFLDSITY-DLVISDVKMPGLDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R D V + E+ + + GA ++ KPF E ++ +R + + Sbjct: 63 ALLGRIKENSPDTAVLMMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVRNALEKRD 122 Query: 123 SKDENQFL 130 K ENQ L Sbjct: 123 LKRENQRL 130 >gi|330963168|gb|EGH63428.1| sensory box protein/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 705 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR + L + G+ A S +A + E P+ +++D M G+ + Sbjct: 7 TILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVD-ERAPDLILLDIMMPGMDGY 65 Query: 63 IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + ++G AGA +L KP L +R L ++ Sbjct: 66 EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|328952068|ref|YP_004369402.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328452392|gb|AEB08221.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 455 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 1/130 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD++L+VD V L G+ VF A S A E + L + +V D M + Sbjct: 1 MDTILVVDDEKNYLLVMETLLAGAGYEVFTADSGETALELTRRNDL-DLVVTDMKMPRMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + D+ V + EK + + GA ++LKPF E + + + ++ Sbjct: 60 GIELLEQLKQVYPDLPVIMMTAYGTVEKAVEAMKKGAFDYILKPFKNEEILLTIAKALEL 119 Query: 121 QKSKDENQFL 130 + EN+ L Sbjct: 120 RHLLTENRRL 129 >gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 59/139 (42%), Gaps = 10/139 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ L+VD ++ K + + V A EA + KE + +++D + + Sbjct: 2 MNKALVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMA-KEKEYDIVLLDVMLPEMD 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +++ + L + I G GA+ ++ KPFN ++ ++ + Sbjct: 61 GMEVCQAIRE---FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAII 117 Query: 119 QM----QKSKDENQFLDAI 133 + KS D+N+ + I Sbjct: 118 RRNSKKSKSVDKNERIIEI 136 >gi|262044459|ref|ZP_06017518.1| OmpR family transcriptional regulatory protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330010607|ref|ZP_08306835.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] gi|259038189|gb|EEW39401.1| OmpR family transcriptional regulatory protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534457|gb|EGF61050.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] Length = 252 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G+ A + A K + +V+D M G Sbjct: 13 ILVVDDDRDIRELIVDYLEKSGYRASGAANGK-AMWSVLKNHQIDLIVLDIMMPGEDGLT 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P D+ V L D I G GA+ +L+KPF L ++ + + Sbjct: 72 LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRRT 130 Query: 122 KSKDEN 127 ++ N Sbjct: 131 RALPPN 136 >gi|262193874|ref|YP_003265083.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077221|gb|ACY13190.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 226 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + G+ EA + E E P+ +++D ++ + Sbjct: 5 KILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLE-ESSPHLILLDINLPSENGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ G V V L D +A R GA+ ++ KPF L + + + Sbjct: 64 GVLGTLRQ--SGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRR 121 Query: 121 QKSKD 125 +++ Sbjct: 122 VGTQE 126 >gi|209520046|ref|ZP_03268823.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209499531|gb|EDZ99609.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 247 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +VR + + GF V + A + + P +V+D M + Sbjct: 3 QTILIVDDDPVVRDLVSEYLHGRGFQVATLENGL-ALQRRLQRERPALVVLDIMMPELDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V L D + G GA+ +L KPF L +R + + + Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 Query: 122 KS 123 S Sbjct: 122 GS 123 >gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + GF V A + E + ++D + G+ Sbjct: 1 MSKILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEE-FDMFILDLMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICRQIR---DKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QM 120 Sbjct: 117 AR 118 >gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757] gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757] Length = 241 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 239 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 124 DALARDSRIDA 134 >gi|2575807|dbj|BAA22997.1| adenylate cyclase [Arthrospira platensis] gi|291568632|dbj|BAI90904.1| adenylate cyclase [Arthrospira platensis NIES-39] Length = 1202 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++L+VD + +R+ + + GF A + + + P+ +V D M Sbjct: 845 NTVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQT-YHPDVIVTDLMMPQVSG 903 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE I +R P + L + D + I G GA++++ KPFN L +R L Sbjct: 904 LELIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL-- 961 Query: 120 MQKSKDENQFLDAI 133 Q K E + + + Sbjct: 962 -QALKAEERRVAHL 974 Score = 94.1 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + F+ F V +A S A + E+ ++ D+ M + Sbjct: 11 TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELPQMQ 121 D L D E ++ +G ++ KP+ + L+ +++ + Sbjct: 70 EFLSLTATQYPDSIRIILTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQGLETH 129 Query: 122 ---KSKDENQFLD 131 KS+ E L Sbjct: 130 NVLKSRTEELRLA 142 >gi|88861074|ref|ZP_01135709.1| osmolarity response regulator [Pseudoalteromonas tunicata D2] gi|88817002|gb|EAR26822.1| osmolarity response regulator [Pseudoalteromonas tunicata D2] Length = 241 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + G++V A + + + + + LV+D + G Sbjct: 8 TKILVVDDDMRLRSLLERYLVEQGYIVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ D+ + L + D I G GA+ ++ KPFN L ++ + + Sbjct: 67 LSICRRLRQKEN--DIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILR 124 Query: 120 MQ 121 + Sbjct: 125 RR 126 >gi|255690627|ref|ZP_05414302.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623650|gb|EEX46521.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1353 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA E +E +P+ ++ D M Sbjct: 1089 KRIEDAKMLIVEDNESIKQMLVSIFETF-YQVTTASDGEEALEKV-REEMPSIILSDVVM 1146 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1147 PRMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1206 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1207 NNLVNSRRLLQE 1218 >gi|254411539|ref|ZP_05025316.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182040|gb|EDX77027.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 505 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + G+ V +A S A E + P+ +++D M+ + Sbjct: 7 NILIVDDHPDNLRSLAAILISAGYKVRKAISGKMALETI-RSYPPDLILLDVKMQQMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V +L D E + G + +++KPF + + ++ + Sbjct: 66 TVCSTLKANAATQRIPVIFLSALDDVEDKVKAFNVGGSDYIVKPFQAQEVLIRVKNNLMI 125 Query: 121 QKSKDEN 127 + E Sbjct: 126 AHQRQEL 132 >gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ V A + +A P+ LV+D + + Sbjct: 1 MKRILVVDDEPQLLRAMQINLRAEGYAVSVAANGTDALHLAASNP-PDVLVLDLGLPD-I 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + +D+ + L + AGA+ ++ KPF + L +R + + Sbjct: 59 EGADVIRGIRAWSDLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAVERR 118 >gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116] gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116] Length = 239 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] Length = 246 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEARE--FCEKELLPNYLVIDESMEG-- 58 LL+V+ +R+ GF V ++ EA + + +V+D + G Sbjct: 17 RLLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPGLG 76 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ +R + + + + G GA+ +L+KPF L R L Sbjct: 77 GLDVCRQLRGNNIT--TPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRALL 134 Query: 119 QMQKSKDEN 127 + + K + Sbjct: 135 RRTQQKPQQ 143 >gi|85716223|ref|ZP_01047197.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A] gi|85696895|gb|EAQ34779.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A] Length = 457 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + F V A++ +A E C + + +++D M + F Sbjct: 4 RVLVVDDIPANVRLLEARLSAEYFDVITASNGAQALETCARAEC-DIILLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 68.3 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 2/111 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + + + + EA + +V + L Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAIDIEPDPSEALFRAAESNYDLLIVSLGLENFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + R + V + + D +++ G G N +LL P ++ L Sbjct: 216 LCSQARSLERTRHVPILAVADVDDNGRLLRGLEIGVNDYLLLPIDKNELLA 266 >gi|85710035|ref|ZP_01041100.1| DNA-binding response regulator [Erythrobacter sp. NAP1] gi|85688745|gb|EAQ28749.1| DNA-binding response regulator [Erythrobacter sp. NAP1] Length = 264 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R+ GF V EA S AR E+ P+ +++D M G Sbjct: 23 TSILLVDDEATLREPLAEYLAGQGFCVTEAQSGAAARSAL-TEVSPDIVLLDIMMPGEDG 81 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + + V +L + I G GA+ +++KPF L +R + + Sbjct: 82 L-SLCRHLVETRGLPVIFLTARGEATDRIVGLELGADDYIVKPFEPRELVARIRSVLRR 139 >gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + + + + V A + + E +K+ +P+ +++D + Sbjct: 1 MAKILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQ-IPDLIILDVMLPDES 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++++ V + L + D + G GA+ ++ KPF+ L ++ L + Sbjct: 60 GF-DILKKIVPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRR 118 Query: 121 QKSKDENQ 128 + N+ Sbjct: 119 IEEVKANK 126 >gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098] gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098] Length = 254 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++ +VD +R + GF A + E E ++ + + +V+D + G+ Sbjct: 6 TICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLE-IQRRVPCSLIVMDIMLPGMNGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + V V +L D I G GA+ +L KPF L +R + + + Sbjct: 65 -ELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTE 123 >gi|205372857|ref|ZP_03225666.1| DNA-binding response regulator [Bacillus coahuilensis m4-4] Length = 227 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL++D ++ + + G+ A++ A E + + +++D M G Sbjct: 1 MYRLLIIDDEEDMQHLIGLYIQNGGYETVFASNSESALEQMRRHE-IDLVLLDIMMPGKD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + DV V +L + + + G + GA+ +++KPF+ L + + Sbjct: 60 GFQVCEEI---CSEYDVPVIFLSAKGEEWDKVKGLKLGADDYIVKPFSPGELLARIEAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ + + + + G+ V A +E P+ ++D + G +E Sbjct: 5 ILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLA-REAQPDLAILDWMLPGLTGIE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R G + V L + + G AGA+ +++KPF+ E L +R + Sbjct: 64 LCRRLRA--TGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRT 121 Query: 122 KSKDEN 127 + DE+ Sbjct: 122 QEVDED 127 >gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] Length = 240 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + L G+ +A EA + E+E + + +++D M + Sbjct: 5 KILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENV-DLILLDVMMPRLNGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + V L + + ++G GA+ ++ KP+N L ++ + + Sbjct: 64 SALMKLREK-SRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYR 122 Query: 123 S 123 + Sbjct: 123 A 123 >gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630] gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile] Length = 233 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M+S+L++D + + + A E +K + +++D M + Sbjct: 1 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +++ V L + D + ++G R GA+ +L KPF+ L + L + Sbjct: 61 DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 239 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A+ A + +++ P+ +++D M G+ F Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKA-RDVRPDAVILDVMMPGMDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D +L + IAG G + ++ KPF+ E + +R + + Sbjct: 73 GLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRTG 132 Query: 123 SKDEN 127 E Sbjct: 133 RGAEE 137 >gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 223 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 7/130 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LLLV+ + + G +V + A + + + +++D + G L+ Sbjct: 3 LLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQS-FDLVILDWMLPGHSGLD 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 +R G V V L + +AG AGA+ +L+KPF L +R L + Sbjct: 62 LCRRLRA--GGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRP 119 Query: 121 -QKSKDENQF 129 ++ DE + Sbjct: 120 PERQSDELRL 129 >gi|332139945|ref|YP_004425683.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str. 'Deep ecotype'] gi|327549967|gb|AEA96685.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str. 'Deep ecotype'] Length = 247 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L++D + ++ + G+ V + E + +++D M + Sbjct: 18 QSILVIDDDLELTEMLATYLSGMGYQVQVRNNGEEGLSEAVSGRHYDLILLDVMMPKMDG 77 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++++ V L D I G GA+ +L KPFN L ++ + + Sbjct: 78 F-DVLKKLRSSHSTPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRH 136 Query: 122 KSKD 125 Sbjct: 137 NLSS 140 >gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC 9905] Length = 239 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQNNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|307592131|ref|YP_003899722.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306985776|gb|ADN17656.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 209 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ ++ D G+ V + + A + P+ +++D +M Sbjct: 14 KILVVDDTIDSLRLMANMLTDQGYNVRKVLNGQMALTAAQSAP-PDLILLDINMPQLNGY 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P+ ++ V ++ + + GA ++ KPF E L + ++ Sbjct: 73 EVCQQLKNNPITAEIPVIFISALDEVLDKVKAFSVGAVDYITKPFYFEELVTRVETQLKL 132 Query: 121 QKSKDE 126 + + E Sbjct: 133 RFLQKE 138 >gi|254881160|ref|ZP_05253870.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 4_3_47FAA] gi|254833953|gb|EET14262.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 4_3_47FAA] Length = 1357 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + +R LF + V+EA + E + +P+ ++ D M Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGVDVAMS-KIPDLIISDIMMPVKDG 1162 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ P + + L + + ++ ++ G + +++KPFN E L+ +R L Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1223 QRERLKR 1229 >gi|255533889|ref|YP_003094261.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255346873|gb|ACU06199.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 1374 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 10/133 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+LLV+ +R + R++ + ++V+EA + EA F K LP+ ++ D M + L Sbjct: 1118 SILLVEDEPELRYLIRNVLKEQ-YVVYEAGTGVEALAFLYK-TLPDLIISDVMMPDMNGL 1175 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E V+Q P + L + G GA++++ KPF L +R+L Sbjct: 1176 ELCRTVKQTPAMAQIPFVILSARGSEDNKAEGYELGADAYIPKPFQINYLLVRIRKLL-- 1233 Query: 121 QKSKDENQFLDAI 133 D+ ++++ Sbjct: 1234 ----DDQARMESL 1242 >gi|218438991|ref|YP_002377320.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424] gi|218171719|gb|ACK70452.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424] Length = 589 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +R++ L + V EA + + E LP+ ++ D M Sbjct: 1 MAKILVIEDELSIRELINELLTLAEYEVIEAENGSQGIELALT-TLPDLILCDIMMPYKN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++ P + +L + G GA+ +L KPF+ + L A+ Sbjct: 60 GYEVLQQLQSYPETESIPFIFLTAKGTKVDFREGMSLGADDYLAKPFSEDDLLQAINTRL 119 Query: 119 QMQKSKDENQFL 130 + +++ E ++L Sbjct: 120 K-KRASIEKRYL 130 >gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D + + + + G+ V A + +K P L++D M G+ Sbjct: 4 RILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNP-PELLILDIMMPGLDGW 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R+ + + L + E + G GA+ +L+KPF E L ++ L + Sbjct: 63 EICRRFRRENF---IPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRR 119 Query: 121 QKSKDE 126 + + + Sbjct: 120 KTNSAK 125 >gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 222 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V + +A E + +V+D + + Sbjct: 1 MTCVLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGG-IDLIVLDLGLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L VD + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 Query: 121 QKSK 124 +S+ Sbjct: 120 GQSE 123 >gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1] Length = 273 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + GF V +A EA E + + N +++D M G+ Sbjct: 43 MQKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEV-NLMIVDVMMPGLD 101 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 102 GIRTTLKVRE-TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRR 160 >gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ + +R + R GF V EA A +E P+ ++D M G+ F Sbjct: 5 ILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTAL-VLAREHAPDMAILDIMMPGMNGFE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + +++ + L + I G GA+ ++ KPFN + ++ + Sbjct: 64 LT-RALRKYSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRR 119 >gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena CCY9414] gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena CCY9414] Length = 230 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V A E + L++D + G L Sbjct: 2 RILLVDDEVELTDPLSRVLKREGYSVDMAYDGATGSE-FAAGGTYDLLILDWMLPGKTGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ G V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 61 EICQELRRQ--GKATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 118 Query: 121 QKS 123 S Sbjct: 119 AGS 121 >gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + GF V A A + L P+ +V+D + G+ Sbjct: 4 TILVVEDEEPILNLVVAYLKADGFAVHTARDGESAL-MLAQTLQPDLIVLDLLLPGMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ +V L + + G GA+ +L KPF+ L ++ + + ++ Sbjct: 63 -EICRRLQRDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRR 121 >gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1352 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + + V +G+ V A + EA + E P+ +++D M + Sbjct: 1229 RVLVAEDNEMNLMVLSEYLQAYGYEVCVARNGREALQVA-AEWRPDLIIMDIQMPELDGL 1287 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R + + AGA +L KP + L + L Sbjct: 1288 EAIRQLRAQAAYATTPIIAVTALAMPGDREQCLLAGATDYLTKPISLRRLARHIERLL 1345 Score = 72.1 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+++SS +V + + A E + P+ +V+ + E Sbjct: 1100 LIIESSAVVAEQLARYLAEQNIQPVVWLYGNGAVEQVAA-MRPDLIVLSVEIPDRSGWEI 1158 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +A +++ P + V + + + E G AGA ++L+KP NR L+ A+ ++ Sbjct: 1159 LADLQRDPELRRIPVIVVSVVDEPE---RGFTAGAAAYLVKPINRAMLQQALSQI 1210 >gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + + G+ V A E K + +++D + G Sbjct: 1 MAKILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSD-IDLVLLDVMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + V + L + D +AG GA+ ++ KPF E L +R Sbjct: 60 GIEVCRRIRME---SQVPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVAL 116 Query: 119 QMQ 121 Sbjct: 117 SRH 119 >gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + K G+ V+ A +A E K + P+ +++D + + Sbjct: 8 KRILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARK-VKPDLMILDIMLPKMDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G V L + + G GA+ +L+KPF L +R + + Sbjct: 67 FEVLAQLQSTG-GVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRR 124 >gi|33864253|ref|NP_895813.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641033|emb|CAE22162.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 268 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL++ +R++ GF V A + + + P+ +++D + V Sbjct: 5 ILLIEDDQDMRELVSSHLEHNGFDVQNAEDGIKG-QALALQYTPDLILLDLMLPNVDGLT 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + + + G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTAGIPILMITALAGTKDKVTGFNSGADDYLTKPFDLEELQVRVKSLLRR 122 >gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB [Congregibacter litoralis KT71] gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB [Congregibacter litoralis KT71] Length = 236 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 ++L+VD +R + R + EA ++ +A + P+ +++D + G Sbjct: 4 RTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQ-RPDIVLLDWMLPGGSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E + +++ ++ V L + + +I G GA+ ++ KPF L ++ L + Sbjct: 63 IELLRRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYITKPFAPRELIARIKALLR 122 Query: 120 MQ---KSKDENQFLD 131 +S D Q + Sbjct: 123 RSGVGESADRMQVSE 137 >gi|301310542|ref|ZP_07216481.1| response regulator DrrA [Bacteroides sp. 20_3] gi|300832116|gb|EFK62747.1| response regulator DrrA [Bacteroides sp. 20_3] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ V A S EA + + N L++D M + Sbjct: 4 TRILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK--DLTVYNLLLLDVMMGEISG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ + + +L + M+ G GA+ ++ KPF+ + ++ + + Sbjct: 62 FKMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLR 121 Query: 120 MQKSKDENQFLDAI 133 K +++ ++ + Sbjct: 122 RTSEKSKDKEIEKL 135 >gi|298387999|ref|ZP_06997547.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298259265|gb|EFI02141.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1377 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+++ +R+ LF + V EA + E +K +P ++ D M F Sbjct: 1126 LLIIEDHDEMREYLCSLF-KEDYNVIEAGNGEEGVAMADK-YIPKLIISDIMMPVKDGFE 1183 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + V +L + + + + G + +++KPFN E L+ ++ L + + Sbjct: 1184 CSREIRENKRTFHIPVIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQR 1243 Query: 122 KSKDEN 127 + Sbjct: 1244 DLLRKL 1249 >gi|256391218|ref|YP_003112782.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357444|gb|ACU70941.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 236 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD + R + G+ V A + P+ +V+D + + Sbjct: 1 MKRLLVVDDEAQLLVAVRINLSARGYEVSVAPDGTTGLAVAARRP-PDLVVLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V + L + + AGA+ F+ KPF+ + L +R L + Sbjct: 60 GV-QVIDGLRGWTTVPILVLSGRTESWDKVEALDAGADDFVTKPFDMDELAARVRSLLRR 118 Query: 121 QKSKD 125 + ++ Sbjct: 119 AEPEN 123 >gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] Length = 1378 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ D + +R+ L G+ V +A + +V D M + Sbjct: 631 VLVADDNADMREYLIRLLLGAGYQVSAVDDGRQALGAIRT-KAFDLVVSDVMMPHLDGLA 689 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A +R P V V L E I G +AGA+ +L+KPF L +R ++ Sbjct: 690 LVAALRADPRTASVPVLLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANIELA 749 Query: 122 KSKDENQF 129 + + + Sbjct: 750 RLRSHHAR 757 >gi|183597266|ref|ZP_02958759.1| hypothetical protein PROSTU_00510 [Providencia stuartii ATCC 25827] gi|188023581|gb|EDU61621.1| hypothetical protein PROSTU_00510 [Providencia stuartii ATCC 25827] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L GF V A +A + + + L + + + Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQLDSSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ+ V L + G GA+ +L KPFN L +R L + Sbjct: 61 ETLKELRQI---HQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRR 117 Query: 121 QKSKDENQ 128 ++NQ Sbjct: 118 SNWSEQNQ 125 >gi|189424441|ref|YP_001951618.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189420700|gb|ACD95098.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 462 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + D G+ V A + +A + +E +P+ +++D M G+ Sbjct: 3 KLILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLI-REEVPDLVLLDIWMPGMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L D+ V + E + R GA F+ KPF+ + + + + Sbjct: 62 IQTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNFK 121 Query: 122 KSKDENQ--FLDAI 133 + + EN+ L A+ Sbjct: 122 ELRKENEALRLSAL 135 >gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLV+ + + G+ V A E E + L++D + Sbjct: 3 KKILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSEN-FDVLLLDVMLPSING 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + V + L +AG AGA+ +++KPF E L +R + + Sbjct: 62 IEICRRIRTQ---SQVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILR 118 Query: 120 MQKSKDEN 127 + N Sbjct: 119 RVTPEQTN 126 >gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787] gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 10/136 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD V + + F F+V+ A A + P+ +++D +M G+ Sbjct: 4 KLLIVDDERGVVDMLKSYFEMQSFVVYTAYDGETALKQAA--CHPDLVLLDINMPGMDGL 61 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 +R + +L ++ I G + GA+ +++KPF+ + L + + Sbjct: 62 TVCEKIRSH---ISCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHLRR 118 Query: 120 --MQKSKDENQFLDAI 133 ++ + E +F + Sbjct: 119 ENRKQGQSELRFFSEM 134 >gi|94986298|ref|YP_605662.1| response regulator receiver/SARP domain-containing protein [Deinococcus geothermalis DSM 11300] gi|94556579|gb|ABF46493.1| response regulator receiver and SARP domain protein [Deinococcus geothermalis DSM 11300] Length = 344 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + K+ + G+ V ++ EA + + P+ ++ D M + Sbjct: 1 MPRILVVDDDAAILKLISVILARAGYEVRTSSHPNEALDLLQV-FTPDLVISDVVMPYMT 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LEF+ VR + + L + + + G GA+ +L KPF L A+ Sbjct: 60 GLEFLERVRNHEKLSALPFILLSSHAERDDVRRGMNLGADDYLPKPFTPHDLTTAVGARL 119 Query: 119 QMQKSKDENQ 128 + + Sbjct: 120 RRAGLTRTQE 129 >gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 252 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--------PNYLVIDE 54 +L+V+ ++R + D G+ + + A ++E + LV+D Sbjct: 20 RILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDL 79 Query: 55 SME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + L+ +R G + + L + + G GA+ +L KPF+ L Sbjct: 80 MLPQVNGLDICRLLR--YHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137 Query: 113 AMRELPQMQK 122 R L + QK Sbjct: 138 RCRALIRRQK 147 >gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1] gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ ++ G+ V A +A + P+ +++D M G + Sbjct: 8 KVLVVDDEPDIVEILKYNLQKEGYEVSTAEDGVKAV-KVASKFHPDVILLDIMMPGQDGV 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ+P + F+ +L ++ +A GA+ ++ KP L + L + Sbjct: 67 ETCLQIRQIPELKNAFIIFLTARMEEYSEVAAFDVGADDYITKPIKPRALMSRIAALFRR 126 Query: 121 QKSKDENQ 128 + K++ Q Sbjct: 127 ELKKEQEQ 134 >gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ V A + EA E E + ++D M + Sbjct: 6 ILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATP-IDLAIVDVMMPKMDGIT 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ V L + + I G GA+ ++ KPF L + + K Sbjct: 65 FTMKLRE-HHHFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQLRRYK 122 >gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 7 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 241 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ + G+ V A A E P+ +V+D + G+ Sbjct: 1 MKPKVLLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAA-WNPDLVVLDVMLPGL 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R G V +L + E+ + G R G + +L KPF+ ++ L Sbjct: 60 NGLQVCRQMRAQ--GQTTPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNL 117 Query: 118 PQMQ 121 + + Sbjct: 118 LRRR 121 >gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + + + VF+A + EA E +E + ++ID M + Sbjct: 1 MYNILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEE-IHLVLIDIMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + +L + + I G GA+ ++ KPFN L + + Sbjct: 60 GTKTTIKIRE-TSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRR 118 Query: 121 QKSKDEN 127 + N Sbjct: 119 YTNYANN 125 >gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01] gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3] gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01] gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3] Length = 239 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G++ +A++ EA E + + + +++D M + Sbjct: 5 KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNV-HLIILDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 EACMKIREE-KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120 >gi|42782234|ref|NP_979481.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987] gi|42738159|gb|AAS42089.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987] Length = 226 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M +L+++ I+R+ H F+ G+ V A E + +++D + + Sbjct: 1 MKKVLIIEDEKIIRETVAHYFSHDGYDVITAEDGQIGLELFAAHDHEVSLIILDIMLPVM 60 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L D + + G GA+ ++ KPF L + L Sbjct: 61 DGWSICRRIRKS---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRL 117 Query: 118 PQMQKSKDENQFLD 131 + D NQ L Sbjct: 118 FK-----DTNQNLQ 126 >gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 229 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RESKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|78213886|ref|YP_382665.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78198345|gb|ABB36110.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 262 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R + GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L + ++G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRR 122 >gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] Length = 237 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + K+ + G+ VF+A E +F E E + +++D + + Sbjct: 5 NILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENE-QIDLILLDLMIPKISG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ ++V V + +V E +I G + GA+ ++ KPF+ + L ++ + + + Sbjct: 63 EDLIKEIRNKSNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122 >gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA] gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA] Length = 233 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L+V+ +R + + F A + +A P+ +++D + + Sbjct: 2 MKVSILVVEDDKAIRNFISATLDIHSYNCFTAENGEQAM-ILATSHKPDIIILDLGLPDI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++++ ++ + + + + I +GA+ +L KPF+ + L +R + Sbjct: 61 DGV-DIIKKIRAWSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVAIR 119 Query: 120 M 120 Sbjct: 120 K 120 >gi|209524733|ref|ZP_03273280.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] gi|209494877|gb|EDZ95185.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] Length = 1206 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++L+VD + +R+ + + GF A + + + P+ +V D M Sbjct: 845 NTVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQT-YHPDVIVTDLMMPQVSG 903 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE I +R P + L + D + I G GA++++ KPFN L +R L Sbjct: 904 LELIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL-- 961 Query: 120 MQKSKDENQFLDAI 133 Q K E + + + Sbjct: 962 -QALKAEERRVAHL 974 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + F+ F V +A S A + E+ ++ D+ M + Sbjct: 11 TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELPQMQ 121 D L D E ++ +G ++ KP+ + L+ +++ + Sbjct: 70 EFLSLTATQYPDSIRIILTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQGLETH 129 Query: 122 ---KSKDENQFLD 131 KS+ E L Sbjct: 130 NVLKSRTEELRLA 142 >gi|149908632|ref|ZP_01897294.1| transcriptional regulator CpxR [Moritella sp. PE36] gi|149808466|gb|EDM68403.1| transcriptional regulator CpxR [Moritella sp. PE36] Length = 288 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL+D + ++ + F V + + +++D M + Sbjct: 62 MTKLLLIDDDRELAELLAEFLSLEDFDVDMVHDGEAGLAAI-RGNQYDMVLLDVMMPKLN 120 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++++ + ++ V L + D + G GA+ +L KPF+ L +R + + Sbjct: 121 GF-EVLKKLRVDNNIPVLMLTAKGDEIDRVLGLEMGADDYLPKPFSERELLARIRAVLRR 179 Query: 121 QK 122 + Sbjct: 180 IE 181 >gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +R+V + F V A EA E K + +++D M + Sbjct: 5 KSILVVDDEKDIREVIEIYLINEEFEVITACDGLEALEKL-KNEAIDLIILDIMMPKLDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + L + + I G GA+ +++KPFN L ++ + Sbjct: 64 IRTCLKIREE-KKMPIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKSQIRRT 122 Query: 122 KSKDENQ 128 S +E + Sbjct: 123 TSFNEPR 129 >gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 246 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A A +E P+ +V+D + V F Sbjct: 21 RVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHA-REFRPDAIVLDVMLPDVDGF 79 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L E +AG AG + ++ KPF+ E L +R L + Sbjct: 80 EVLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRAG 139 Query: 123 SKDENQ 128 + Sbjct: 140 MAAAQR 145 >gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 325 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ ++ G+ V A + A + E P+ +V+D + + Sbjct: 84 RVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMID-EFQPDAVVLDIMLPDMDGL 142 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ V +L + E + G AG + ++ KPF+ E L +R L + Sbjct: 143 AVLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRR 200 >gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170] gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 7/128 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + + G+ VF A + E +K P+ +++D M Sbjct: 1 MKKKDIKILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKK-KQPHLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R+ D + +L + +AG AGA+ ++ KP + L + Sbjct: 60 PEMDGIEACEIIRKTVGLEDTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKV 119 Query: 115 RELPQMQK 122 + L + + Sbjct: 120 KALLRRFR 127 >gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614] gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614] Length = 236 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A + +A KE P+ +V+D + Sbjct: 12 RVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAA-KEFRPDAVVLDIMLPDFDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V +L E +AG AG + ++ KPF+ E L +R L + Sbjct: 71 EVLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAG 130 Query: 123 SKD 125 ++ Sbjct: 131 AQQ 133 >gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 226 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ + + + G+ V A ++ P+ ++D + G+ Sbjct: 5 ILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLA-RDSSPDLAILDWMLPGLTGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G+ V V L + + +AG AGA+ +++KPF+ E L +R + + Sbjct: 64 ICRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQE 123 Query: 124 KDEN 127 E+ Sbjct: 124 TAED 127 >gi|298482580|ref|ZP_07000765.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D22] gi|298271287|gb|EFI12863.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D22] Length = 1322 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 10/141 (7%) Query: 1 MD------SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54 M +LL+V+ +R R F + V + EA C P+ ++ D Sbjct: 1044 MKDPDDRNTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDV 1101 Query: 55 SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 M G E V++ P + + V L + + E ++ G + GA+ ++ KPF+ E L+ Sbjct: 1102 MMPGIRGDELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKL 1161 Query: 113 AMRELPQMQKSKDENQFLDAI 133 ++ L + + + AI Sbjct: 1162 KVQGLIDNRNRQRQFFMRQAI 1182 >gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931] gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931] Length = 228 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LLV+ + L GF + +A E+E P+ +++D + G+ Sbjct: 1 MTKILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFERED-PDLVLLDVMLPGMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GMEVCKKIRASSS---VPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVL 116 Query: 119 QMQ 121 + Q Sbjct: 117 RRQ 119 >gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 230 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + + GF VF+ + +A + E L + ++D + + Sbjct: 1 MQDKILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENL-DLAILDVMLPDM 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R+ V L + + I G GA+ ++ KPF + ++ Sbjct: 60 NGFELCQKIREKYQY---PVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQ 116 Query: 118 PQMQK 122 + K Sbjct: 117 LRRYK 121 >gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1] gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1] Length = 224 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + K + + ++ G+ V + E + +++D + + Sbjct: 1 MAKILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPY-DLIILDIMLPEIN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + H+R+ + V + + + + I G +GA+ +L KPF+ L ++ + Sbjct: 60 GYNILKHIRENKIL--TPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAIL 117 Query: 119 QMQKSKDEN 127 + S+ E Sbjct: 118 RRTFSQYEQ 126 >gi|103486250|ref|YP_615811.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976327|gb|ABF52478.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 244 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D +R+ GF V +A S EAR + + + +V D M G Sbjct: 6 MPRILLIDDEPSIREPLGEYLTAQGFAVTDAASAAEARSVLRAKSV-DLVVSDIMMPGED 64 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 H+R+ + + V L + + I G GA+ +++KPFN L +R + Sbjct: 65 GLSLTRHLRE---TSSIPVILLTARAEDTERIIGLEIGADDYVVKPFNPRELVARIRTVL 121 Query: 119 QMQKSKDENQFLDA 132 + ++ + LDA Sbjct: 122 RR--TQQNGRSLDA 133 >gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 239 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC 15579] gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC 15579] Length = 231 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + ++ + G+ VF+AT+ +A +E + +++D M G+ Sbjct: 1 MFNVLIVDDEAEIIELMEIYLLNDGYKVFKATNGLDALNIINEEK-IHLVILDIMMPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + + + I G GA+ +++KPF+ L ++ + Sbjct: 60 GLQVCMKIRKEY-NIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRR 118 Query: 121 QKSKDEN 127 +EN Sbjct: 119 YVYLNEN 125 >gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 8/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + R + + G+ + A + + + L++D + L Sbjct: 2 RILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGY-DLLILDWMLPYLSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R G V +L + + + G GA+ +L+KPF L +R L + Sbjct: 61 EICQQLRSQ--GKTTPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRR 118 Query: 121 QKSKDEN---QFLDA 132 + + N + L A Sbjct: 119 SPTFEANISQERLKA 133 >gi|27378817|ref|NP_770346.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27351966|dbj|BAC48971.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ R + + F V A + E + + + +V+D + G Sbjct: 40 QSILIVEDDQETRNLVARYLRENSFNVGMAANGRE-MDRYISQNRVDLIVLDLMLPGEDG 98 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R T + L + D I G GA+ +L KPFN L + + + Sbjct: 99 LSLCRRLRVD---TTTPIIILTAKGDDVDRILGLEMGADDYLPKPFNPRELLARINAVLR 155 Query: 120 MQ 121 Q Sbjct: 156 RQ 157 >gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium 4_1_37FAA] Length = 234 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +++V+ +R+ G+ VF+A + E E+E + ++D M + Sbjct: 1 MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREK-IDLAIVDIMMPVM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V L + + + G GA+ ++ KPF L + + Sbjct: 60 DGITMTMRLREKY-EFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLR 118 Query: 120 MQKSKDE 126 E Sbjct: 119 RYNRFQE 125 >gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 232 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD ++ K R G V A EA + + +++D + Sbjct: 3 KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHY-DMILLDVMLPKLDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ + V + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQSIRE---FSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus] Length = 239 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|206890474|ref|YP_002248031.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742412|gb|ACI21469.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 500 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L VD K+ + + + G+ V A + A E + + + + +++D M G+ Sbjct: 8 ILCVDDEPQNLKLLQAILSPRGYEVLVAQNGFLALEILKNQNV-DIVLLDVMMPGMDGYE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + V + E I G AG FL KPF+ + + L +++ Sbjct: 67 VCRKIKEDETLRHIPVIMITALTAKEDRIRGIEAGTEEFLSKPFDVGEVLARINMLLRVK 126 Query: 122 KSKDENQ 128 D+ + Sbjct: 127 ALNDKLR 133 >gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 227 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ +R+ + + V A E + + + +V+D + G Sbjct: 13 RVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEY-DVIVLDVMLPGLSGW 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF+ +R V L + + G GA+ +L KPF+ E L +R L + Sbjct: 72 EFLQKLR---PTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRR 128 Query: 121 QKSKDE 126 + + Sbjct: 129 AAGQPQ 134 >gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 228 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R V + G V EA EA + ++ + + +++D M + Sbjct: 1 MGVILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEV-DLVILDVMMPRMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 H+R+ V + L + I G GA+ ++ KPFN L ++ Sbjct: 60 GIKACMHIREQYS---VPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQL 116 Query: 119 QMQKSKDENQ 128 + QK + Sbjct: 117 RRQKMLTSKE 126 >gi|153840529|ref|ZP_01993196.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810] gi|149745809|gb|EDM56939.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810] Length = 229 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + + + + + GF V EA + +++D M + Sbjct: 1 MANILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAV--NSDIDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKDEN 127 +N Sbjct: 118 TSHTQKN 124 >gi|75908456|ref|YP_322752.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413] gi|75702181|gb|ABA21857.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413] Length = 1156 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 5/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+VD + +R + G+ V+ A + E +EL+PN +V D M L Sbjct: 799 SILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKV-QELVPNLIVTDLMMPLVTGL 857 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R + L +VD E I GA+++L KPFN L +R L + Sbjct: 858 EMIRMIRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLAL 917 Query: 121 QKSKDENQFLD 131 +++ E + L+ Sbjct: 918 KEN--EKRVLE 926 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 2/117 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + F + V A S A + +E ++ D+ M + Sbjct: 10 KILVVDDEPDNLDLLYRTF-YRDYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP 118 D+ L D E ++ AG ++ KP+ E L+ +R+ Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQAL 125 >gi|39996422|ref|NP_952373.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983302|gb|AAR34696.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 460 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+V + + G+ V A S E + E P +V D M G+ F Sbjct: 9 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFD-ERSPALVVTDLKMPGMGGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ D V + E + +AGA ++ KPFNR+ L+ +++ +M Sbjct: 68 RLLQEIKGRS--PDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALKLTVKKALEM 125 Query: 121 QKSKDENQFL-DAI 133 EN+ L +A+ Sbjct: 126 LGLSRENRRLREAL 139 >gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V +A + E E+E + +++D + + Sbjct: 4 KKILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERET-FDLIILDIMLPYMNG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I +R++ ++V + L + + + G GAN ++ KPF E L +R + + Sbjct: 63 -IEVLRKIRHNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALKTK 121 Query: 122 K 122 Sbjct: 122 N 122 >gi|256419739|ref|YP_003120392.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256034647|gb|ACU58191.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 229 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ + GF + A E +E P+ +V+D M + Sbjct: 1 MSKVLLIEDEWQLGQIVKDSLEMRGFEMLYAADGKEGL-RLYQEHQPDVVVLDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F L + +L + ++ G G N +L KPF+ + L ++ L + Sbjct: 60 GFTVTTEIRKLDKTTPIIFLTAKSQTTDVVKGFELGGNDYLKKPFSMDELIVRIKALLER 119 >gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18] gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29] gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3] gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3] gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29] gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18] Length = 243 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 11 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 70 EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 126 >gi|255692182|ref|ZP_05415857.1| putative response regulator receiver domain protein [Bacteroides finegoldii DSM 17565] gi|260622047|gb|EEX44918.1| putative response regulator receiver domain protein [Bacteroides finegoldii DSM 17565] Length = 1358 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LLLV+ + R + DF + + EA E +E P+ ++ D M Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PDLIISDIMMPKVDG 1163 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + V L + I GA+S++ KPFN + L + +L + Sbjct: 1164 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1223 Query: 120 MQKSKDEN 127 Q+ + + Sbjct: 1224 QQERRKQE 1231 >gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3] gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 241 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124 >gi|78183896|ref|YP_376330.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78168190|gb|ABB25287.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] Length = 259 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 8/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R + GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + L + ++G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123 Query: 122 -----KSKDENQFLD 131 + ++N+ L Sbjct: 124 DRAPLGASNQNEILS 138 >gi|293399972|ref|ZP_06644118.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306372|gb|EFE47615.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 226 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD +R + R G+ + EA +A E C K+ + +++D M + Sbjct: 1 MSKLLVVDDEAQIRNIIRKYGEFEGYEIAEAVDGMDAIEKCRKD-QFDLIIMDIMMPNLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + V+++ V L + I G G + +++KPF+ + L + + + Sbjct: 60 GF-SAVKKIREEASTPVIMLSARGEEYDRIHGFETGIDDYVVKPFSPKELMMRVNAILKR 118 Query: 121 QKSKDENQ 128 +++ + Sbjct: 119 VHGEEDKK 126 >gi|284052262|ref|ZP_06382472.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 1066 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++L+VD + +R+ + + GF A + + + P+ +V D M Sbjct: 845 NTVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQT-YHPDVIVTDLMMPQVSG 903 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE I +R P + L + D + I G GA++++ KPFN L +R L Sbjct: 904 LELIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL-- 961 Query: 120 MQKSKDENQFLDAI 133 Q K E + + + Sbjct: 962 -QALKAEERRVAHL 974 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + F+ F V +A S A + E+ ++ D+ M + Sbjct: 11 TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELPQMQ 121 D L D E ++ +G ++ KP+ + L+ +++ + Sbjct: 70 EFLSLTATQYPDSIRIILTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQGLETH 129 Query: 122 ---KSKDENQFLD 131 KS+ E L Sbjct: 130 NVLKSRTEELRLA 142 >gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 228 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ V EA EA E+ + + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEALDGKEALSIFEEHEV-HLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 IESR 120 >gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family protein [Marinobacter algicola DG893] gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family protein [Marinobacter algicola DG893] Length = 228 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +LLV+ +R++ + GF V EA + + + + +V+D + + Sbjct: 3 NRVLLVEDDEELRELLSRYLANQGFTVREAANGQDGLSLALGQHC-DLVVLDIMLPDISG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+ T + V L D I G GA+ ++ KP N L ++ L + Sbjct: 62 L-EVLRQLRAKTHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALLRR 119 >gi|319654045|ref|ZP_08008137.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394238|gb|EFV74984.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 226 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 58/125 (46%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD + + G+ + +S +A + E + + +++D M + Sbjct: 1 MKTILLVDDETRMLDLLALYLMPLGYYCVKKSSAIDAILYVESHSV-DLILLDVMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + A +++ D+ + L + ++ G + GA+ ++LKPF+ E L + + + Sbjct: 60 GWTAC-KEIKKFRDIPIIMLTARSEKPDIVKGLKMGADDYILKPFDEEELLARIEAVLRR 118 Query: 121 QKSKD 125 +S + Sbjct: 119 TQSSE 123 >gi|317480636|ref|ZP_07939723.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316903143|gb|EFV25010.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 1310 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLL + +R+ + + V +A E +E+ P+ ++ D M E Sbjct: 1068 LLLAEDDADMREYLVDSLSSE-YKVVAVPDGGKALETA-REINPDIIISDIVMPVLEGDE 1125 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L + E +I G AGAN +++KPF+ L+ +R + Q + Sbjct: 1126 LCRILKSSVDTSHIPIILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1185 Query: 122 KSKDE 126 + E Sbjct: 1186 QHLRE 1190 >gi|261868867|gb|ACY02044.1| two-component system sensor histidine kinase/response regulator [Flammeovirga yaeyamensis] Length = 1385 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 5/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D + +R++ + L D + V+ A + + +K ++PN ++ D M + Sbjct: 1129 KILVIDDNFSIREMMKDLLKDT-YDVYLADNGKNGLDLAKK-IMPNLIISDIMMPEMDGY 1186 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L + E + G G ++++ KPFN E L + L + Sbjct: 1187 ELTQRIREDNHICHLPIILLTAKKSEESKLKGYEYGVDAYVTKPFNSEVLLARILTLIEN 1246 Query: 121 QKSKDENQF 129 +K++ +N+F Sbjct: 1247 RKNQ-QNRF 1254 >gi|218130333|ref|ZP_03459137.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697] gi|217987512|gb|EEC53841.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697] Length = 1331 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R +F G+ + + EA +E P+ ++ D M + Sbjct: 1079 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEAL-IIIREFNPDLVISDIMMPEMTG 1136 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + M+ G + GA+++++KPF+ L+ ++ + Sbjct: 1137 DELCSIIKGNLEVSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNILA 1196 Query: 120 MQKSKD 125 + Sbjct: 1197 NRALLR 1202 >gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905] gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905] Length = 224 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ GF EA EA + + +V+D M + Sbjct: 1 MTTILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPV-DLVVLDIMMPTMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ ++ + L + + + G G + +L KPF+ L ++ L Sbjct: 60 GWTLCKELRR--ANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALL 117 Query: 119 QMQK 122 + + Sbjct: 118 KRYR 121 >gi|124024913|ref|YP_001014029.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123959981|gb|ABM74764.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 265 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 8/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R + GF V +A + + + P+ +++D + L Sbjct: 5 ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKG-QALALQYAPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + + + + + G +GA+ ++ KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRRT 123 Query: 122 K-----SKDENQFLD 131 S ++ + LD Sbjct: 124 NRAPLGSNNQQEILD 138 >gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio coralliilyticus ATCC BAA-450] gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio coralliilyticus ATCC BAA-450] Length = 239 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|163788047|ref|ZP_02182493.1| transcriptional regulator [Flavobacteriales bacterium ALC-1] gi|159876367|gb|EDP70425.1| transcriptional regulator [Flavobacteriales bacterium ALC-1] Length = 350 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL++ I+R+ L + V A + + E +P+ ++ D M Sbjct: 1 MKKVLLIEDDAILRENTAELLELSDYDVVTAANGKLGVDKAI-ETMPDIIISDIMMPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + +L + + + + G GA+ ++ KPF+ + L A+ Sbjct: 60 GYGVLEALSSNDNTKHIPFIFLSAKTERQDVRKGMNLGADDYITKPFSEDELISAIESRI 119 Query: 119 QMQKSKDENQ 128 E + Sbjct: 120 AKAAILKEER 129 >gi|91228465|ref|ZP_01262389.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01] gi|269966827|ref|ZP_06180900.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B] gi|91188000|gb|EAS74308.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01] gi|269828494|gb|EEZ82755.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B] Length = 229 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + + + + + GF V EA + +++D M + Sbjct: 1 MANILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAI--NDKIDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKDEN 127 S +N Sbjct: 118 TSSTQKN 124 >gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 233 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R+ G+ V +A KE LP+ +V+D + G + Sbjct: 4 RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRM-KERLPDLVVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKD 125 + Sbjct: 123 AAPER 127 >gi|163845631|ref|YP_001633675.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222523334|ref|YP_002567804.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|163666920|gb|ABY33286.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222447213|gb|ACM51479.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 313 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L D +R + GF V A +E LP+ +++D + G Sbjct: 9 TVLFADDDPHIRTLLSDTLTQAGFAVLAAEDGLS-LIRIAQEQLPDIILVDLMLPGVDGY 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R + + + + ++ G GA+ ++ KPFN L +R L + Sbjct: 68 EAIRQLRNDTRTAHLPIIIVTARANPSDVVIGFDTGADDYITKPFNEAELVARIRSLLRR 127 >gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + GF V A A +E P+ +V+D + + F Sbjct: 9 KLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEA-QESRPDLIVLDVMLPDMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L D I G G + ++ KPF E + +R + + Sbjct: 68 TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 127 Query: 123 SKDENQFL 130 +E L Sbjct: 128 GGEEEDAL 135 >gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] Length = 229 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 237 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + + G+ V++A E E + +++D + +L Sbjct: 5 KILIIEDEESINNIVKSYLVKEGYEVYQAFDGEEGLRKFLAED-IDLVILDLMLPKMLGE 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V V L +V+ + G R GA+ ++ KPF+ L ++ + + Sbjct: 64 DVMKEIRNRSE---VPVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLRR 120 Query: 121 QK 122 + Sbjct: 121 IE 122 >gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V + + EA + E + +++D M + F Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEK-FDLILMDIMMPKIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + T+ + +L + + + I G +G + ++ KPF+ L M + + Sbjct: 63 -EAIKVIRKFTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRRSN 121 Query: 123 SKD 125 ++ Sbjct: 122 VRE 124 >gi|154505423|ref|ZP_02042161.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149] gi|153794266|gb|EDN76686.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149] Length = 232 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R+ + G+ VF A E E EKE + ++D M + Sbjct: 3 MNHILVVEDDKEIREGVKIYLQSQGYEVFLAADGIEGLEVMEKED-IHLAIVDIMMPRMD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D V L + + I G GA+ ++ KPF L + + Sbjct: 62 GIRMTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRR 120 Query: 121 QK 122 + Sbjct: 121 YR 122 >gi|329960128|ref|ZP_08298592.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328533080|gb|EGF59853.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 1343 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R+ R+ ++ + + ++ A KE LPN ++ D M + Sbjct: 1082 KILIVEDNDELREYLRNTLSET-YHIQVCSNGKMALTIA-KEYLPNLIISDIMMPEMRGD 1139 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + + L + +I G GA+ +++KPFN LR + L Sbjct: 1140 ELCKALKNDIETSHIPIILLTALNTDKNIIEGLETGADEYIVKPFNIGILRATIANLLNN 1199 Query: 121 QKSKD 125 + Sbjct: 1200 RALLR 1204 >gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 7169] Length = 230 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--- 59 +L+V+ + ++ + F V +A A E P+ +++D M Sbjct: 4 KILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEK-PDLILLDWMMPHGESG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++F +++ P D+ + L + + + + G AG + ++ KPF+ L +R + + Sbjct: 63 IDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVRAVLR 122 Query: 120 MQKSKDENQFLDA 132 + + A Sbjct: 123 RTGIDMGKELMQA 135 >gi|254785465|ref|YP_003072894.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237685667|gb|ACR12931.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 120 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ G V EA+ EA + E + ++ D +M + Sbjct: 1 MAKILAVDDSASMRQMVSFTLKGAGHQVCEASDGVEALSLAKAESGVDLVISDINMPNMD 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +RQ+P + L E +K G AGA +++KPFN + L + ++ Sbjct: 61 GISLIKELRQLPEYKFTPILMLTTESGVDKKSEGKAAGATGWIVKPFNPDQLLATIGKVL 120 >gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC 49176] gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC 49176] Length = 239 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + F G+ VF A + EA KE + +++D M + Sbjct: 8 MYNILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEE-IHLILMDVMMPVMD 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I VR++ + + V L + + + G GA+ ++ KPFN L + + Sbjct: 67 G-IQTVRKLREDSIIPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIRR 125 >gi|229589756|ref|YP_002871875.1| putative two-component system fusion protein [Pseudomonas fluorescens SBW25] gi|229361622|emb|CAY48502.1| putative two-component system, fusion protein [Pseudomonas fluorescens SBW25] Length = 1243 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD S + L +D ++V A +A ++ + ++ D M Sbjct: 838 RVLVVDDSPEMLSYLSELLHD-DYIVATAADGEQAWALLQRRP-IDVVLSDVMMPELDGF 895 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + V L E ++G +GA+ ++ KPF+ L+ +R +M Sbjct: 896 GLTARIKASAGFAHLPVILLTARGGSEACVSGLESGADDYIAKPFSPLELKARVRAALRM 955 Query: 121 QKSKDENQ 128 + + E Q Sbjct: 956 SQVQTELQ 963 >gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA + +E P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAEE--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRVFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMA 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|229120236|ref|ZP_04249487.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663277|gb|EEL18866.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 223 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 228 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 7/130 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ V EA EA E E + +++D + + Sbjct: 1 MKRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFE-EYEVHLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + G GA+ ++ KP++ L + L Sbjct: 60 DGWTVCRRIRKK---SNVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQKSKDEN 127 + + S N Sbjct: 117 MESRYSSAAN 126 >gi|88807565|ref|ZP_01123077.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788779|gb|EAR19934.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 246 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + + G+ V A + P+ +V+D ++ + Sbjct: 10 RILLVDDEARLTDLLKMELEVEGYDVIVAADGASGLFHARETPGPDLIVLDWNLPDFSGI 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G + L D + AG + +L+KPF+ E L +R + + Sbjct: 70 DICQRIR--SSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRR 127 >gi|237723313|ref|ZP_04553794.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447835|gb|EEO53626.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1337 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ ++V ++ EA E P ++ D M + Sbjct: 1072 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1129 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1130 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1189 Query: 120 MQKSKD 125 + Sbjct: 1190 NRALLR 1195 >gi|163938509|ref|YP_001643393.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010010|ref|ZP_04167225.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229165524|ref|ZP_04293304.1| Two-component response regulator [Bacillus cereus AH621] gi|163860706|gb|ABY41765.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228617972|gb|EEK75017.1| Two-component response regulator [Bacillus cereus AH621] gi|228751292|gb|EEM01103.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 223 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA E E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980] gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + ++ ++ G+ +A EA + L++D M + Sbjct: 2 KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDGM 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+++ + + + L + I G AGA+ ++ KPFN + ++ L + K Sbjct: 62 -QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 120 Query: 123 SK 124 + Sbjct: 121 MQ 122 >gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD ++ K R V A EA E +++ + +++D + Sbjct: 3 RKVLVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEY-DMILLDVMLPKYDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R +DV V L + + I G GA+ ++ KPFN ++ M+ + + Sbjct: 62 FEVCRQIR---DFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMR 118 Query: 120 MQKSKD 125 KD Sbjct: 119 RVAKKD 124 >gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 228 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + R G+ V A S EA P+ +V+D M V Sbjct: 4 RVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASP-PDLMVLDIMMPDVDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + L + G GA+ +L+KPF E L +R L + Sbjct: 63 EVCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALSRR 120 >gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 235 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +++VD + + + GF+V A + EK+ +V+D + + Sbjct: 1 MKDKIIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDA-ALIVLDLMLPEL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + + L + D + G GA+ +L KPF+ + ++ + + Sbjct: 60 DGLEVCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILR 119 Query: 120 MQKSK 124 + Sbjct: 120 RMNQQ 124 >gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|262392993|ref|YP_003284847.1| copper-sensing two-component system response regulator CpxR [Vibrio sp. Ex25] gi|262336587|gb|ACY50382.1| copper-sensing two-component system response regulator CpxR [Vibrio sp. Ex25] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + + + + + GF V EA + +++D M + Sbjct: 1 MANILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAV--NDKIDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKDEN 127 S +N Sbjct: 118 TSSTQKN 124 >gi|209964322|ref|YP_002297237.1| DNA-binding response regulator, putative [Rhodospirillum centenum SW] gi|209957788|gb|ACI98424.1| DNA-binding response regulator, putative [Rhodospirillum centenum SW] Length = 238 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+VD +R + G+ V A E + + +V+D + G Sbjct: 7 LLIVDDDREIRDLLTRYLARHGYRVTAAKDGQE-MRRYLADRNIDLVVLDLMLPGEDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V L + I G GA+ +L KPFN L ++ + + Sbjct: 66 LCRAIRADGG---PPVVMLSAMGEDADRILGLEIGADDYLPKPFNPRELVARIKAVLRRV 122 Query: 122 K 122 + Sbjct: 123 Q 123 >gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] Length = 792 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +V + + L D + V AT A E E + ++ D + + Sbjct: 2 RILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEA-FEYDLILSDVMLPRLDGV 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G + + L + G AGA+ +++KPF+ E L +R L + Sbjct: 61 GLCQQLRSQ--GYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRR 118 Query: 121 QKS 123 ++ Sbjct: 119 GEA 121 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +++VD + + L +G V + E P+ L++D M G + Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETL-TNSPPDLLLLDVEMPEIGGI 547 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR + + +L + + + +GA+ F+ KP L + + Sbjct: 548 DLCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607 Query: 121 QKSKDENQFLDAI 133 + + +D + Sbjct: 608 TRLQRRLSTIDPL 620 >gi|150396149|ref|YP_001326616.1| response regulator PleD [Sinorhizobium medicae WSM419] gi|150027664|gb|ABR59781.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium medicae WSM419] Length = 455 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A A CE+ + + +++D M + F Sbjct: 4 RILVVDDVPANVKLLEARLVAEYFEVLTAADGHAALAICEQTSV-DLVLLDIMMPHMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKASSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLVRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KNVSDELRLRA 133 Score = 72.1 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 48/133 (36%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 S+LLVD ++ V + A E + ++++ + + Sbjct: 155 SVLLVDGRASSQERLTRALRPI-ADVAVLSDAQAALFEA-AENSFDLVIVNANFDDYDPL 212 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + + + + + E ++ G ++++P + L L Q+ Sbjct: 213 RLCSQLRSLERTRFIPILLVTEQGNDEMIVRALELGVTDYIMRPVDPNELVAR--SLTQI 270 Query: 121 QKSKDENQFLDAI 133 ++ ++ ++ Sbjct: 271 RRKHCNDRLRASV 283 >gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] Length = 248 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ V A S A +E+ P+ +V+D + Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSA-QEIDPDVIVLDIMLPDFDGL 76 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L + E +AG AG + ++ KPF+ E + +R L + Sbjct: 77 EVMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136 Query: 123 SKDE 126 + +E Sbjct: 137 ASEE 140 >gi|310827155|ref|YP_003959512.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612] gi|308738889|gb|ADO36549.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612] Length = 231 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ +R + + + V EA EA E P+ +++D + + I Sbjct: 7 VLLVEDEKGIRNFISTVLDVNNYRVVEARDGKEALELF-TSRCPDLILLDLGLPDMDG-I 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + + + + + + GA+ ++ KPF L +R + Q+ Sbjct: 65 EVLKTIRGWSGIPIIVVSARGHEREKVEALDLGADDYITKPFGTSELLARIRTAMRHQQ 123 >gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RESKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|256395907|ref|YP_003117471.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362133|gb|ACU75630.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 230 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R + V + +A + LP+ +++D + + Sbjct: 1 MTRILVVDDEPQILRALRINLKSRTYDVETVANGVDALASAAR-RLPDAVLLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V + L D ++ I AGA+ F+ KPF E L +R + + Sbjct: 60 GVEVIL-GLRGWTTVPIVVLSGRTDPQEKIHALDAGADDFVTKPFAMEELLARLRAVIRR 118 Query: 121 QKSKD 125 + + Sbjct: 119 HQQAN 123 >gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D + + + G+ V A E + +++D M G+ Sbjct: 4 NILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNH-FDLVILDVMMPGLDGW 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + E + G GA+ +L+KPF L +R L + Sbjct: 63 QVCGQIRE---YYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRR 119 Query: 121 QKSKDEN 127 + Sbjct: 120 SGKTEAQ 126 >gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 231 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + + GF + +A K + V+D + G+ Sbjct: 7 RILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSY-DLFVLDIMLPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R T V V +L + G G + +L KPF L +R L + Sbjct: 66 ELCRRLRSK---TTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122 >gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 216 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + LLL+D + + + G+ V A + EA E +P+ ++ D M + Sbjct: 10 NRLLLIDDDPNLILLVKDYLEFQGYEVTTAENGREALEIL-ANQVPDMIICDVMMPEMDG 68 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ VRQ + + V +L + + + G GA+ +++KPF E L + Sbjct: 69 YAFVEKVRQDRRLSWIPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELAAQVESSLS 128 Query: 120 MQKSKDENQ 128 + E++ Sbjct: 129 QARRLMEHK 137 >gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552] gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + +F+ +A E +K + ++D M + F Sbjct: 4 NILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHY-DLAILDVMMPDLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++++ V L + + I G GA+ +L KPFN L ++ + Sbjct: 63 -SLLKKIRKHYYFPVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYL 121 Query: 123 SKDEN 127 ++N Sbjct: 122 RYNQN 126 >gi|317475679|ref|ZP_07934939.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908135|gb|EFV29829.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1354 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R D F EA + EA E + + + ++ D M + Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEV-DIIITDVMMPVMDGI 1162 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + D + + G + GA+ ++ KPF + ++ + + Sbjct: 1163 KLCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMRT 1222 Query: 121 QK 122 ++ Sbjct: 1223 RR 1224 >gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08] Length = 226 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ R+ + GF V ATS + E + + +++D M G Sbjct: 1 MTRVLIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGA-DIVLLDLMMPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ +V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRQRG---NVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVT 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098] gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098] Length = 234 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R+ + + G+ EA S EA + EKE P ++D + G+ Sbjct: 6 KKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKE-RPALAILDIMLPGMSG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + + I G GA+ +++KPFN + L +R L + Sbjct: 65 YEVCEKIRTEAPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRR 123 >gi|218128498|ref|ZP_03457302.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697] gi|217989389|gb|EEC55702.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697] Length = 1354 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R D F EA + EA E + + + ++ D M + Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEV-DIIITDVMMPVMDGI 1162 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V+Q + V L + D + + G + GA+ ++ KPF + ++ + + Sbjct: 1163 KLCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMRT 1222 Query: 121 QK 122 ++ Sbjct: 1223 RR 1224 >gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F D G+ V A++ EA E+C+K+ + +++D M + F Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD--IDIILLDIMMPNIDGF 61 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +L I G G + +++KPF+ + L+ ++ + Sbjct: 62 QVCQKIR---DKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118 Query: 121 QKSKDENQF 129 +K N Sbjct: 119 EKRIPLNNR 127 >gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. CB0205] Length = 253 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D +R++ G V A + +A E P+ +V+D M + F Sbjct: 11 KILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASE-PDVVVLDVMMPELDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R ++V + L D I G + GA+ +++KPF+ + L +R + + Sbjct: 70 AVTERIRAQ-SEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVS 128 Query: 123 SKDEN 127 S N Sbjct: 129 SVQAN 133 >gi|320354603|ref|YP_004195942.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfobulbus propionicus DSM 2032] gi|320123105|gb|ADW18651.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfobulbus propionicus DSM 2032] Length = 378 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD V +L + V S +A +E P+ +++D M G+ F Sbjct: 6 VLVVDDEPTNLAVLANLLRPL-YTVRACKSGEQALAAAIREPRPDLILLDVMMPGMDGFS 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +RQ D+ V ++ D G R GA ++ KP + ++ +++ Sbjct: 65 VLHRLRQHEHSRDIPVIFVTALSDELDEEHGLRLGAVDYITKPIKPAVVLSRVQVHVEVK 124 Query: 122 KSKDENQ 128 +++D + Sbjct: 125 QARDRLK 131 >gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 248 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A ++ P+ +V+D + + Sbjct: 22 RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAV-RAARDFRPDAVVLDVMLPDMDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 81 AVLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140 Query: 123 S 123 S Sbjct: 141 S 141 >gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 239 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 124 DALARDSRIDA 134 >gi|160946255|ref|ZP_02093466.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270] gi|158447778|gb|EDP24773.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270] Length = 226 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + + + V EA + E E + +V+D M V Sbjct: 2 RILICEDEIDLADGLCTILKGNKYSVDVVYDGEEALTYLEAENY-DAVVLDIMMPKVDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + V L + + E + G GA+ +L KPF + L +R + + ++ Sbjct: 61 TVLKTIRENGNSIPVIMLTAKSELEDKVIGLDCGADDYLTKPFEVKELLARLRAITRRKE 120 Query: 123 SKDEN 127 + +N Sbjct: 121 TVTDN 125 >gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 228 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 6/133 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + L GF A A ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGA-DIVLLDLMLPGMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GNDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVL 116 Query: 119 QMQKSKDENQFLD 131 + + + LD Sbjct: 117 RRGQEAESETSLD 129 >gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 234 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 13 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 72 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 Query: 121 QK 122 + Sbjct: 129 YQ 130 >gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 225 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELF-AEHTIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESE---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|160889191|ref|ZP_02070194.1| hypothetical protein BACUNI_01612 [Bacteroides uniformis ATCC 8492] gi|156861198|gb|EDO54629.1| hypothetical protein BACUNI_01612 [Bacteroides uniformis ATCC 8492] Length = 1310 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLL + +R+ + + V +A E +E+ P+ ++ D M E Sbjct: 1068 LLLAEDDADMREYLVDSLSSE-YKVVAVPDGGKALETA-REINPDIIISDIVMPVLEGDE 1125 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L + E +I G AGAN +++KPF+ L+ +R + Q + Sbjct: 1126 LCRILKSSVDTSHIPIILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1185 Query: 122 KSKDE 126 + E Sbjct: 1186 QHLRE 1190 >gi|266624703|ref|ZP_06117638.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288863426|gb|EFC95724.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 244 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L D +R+V R L G+ V EA + EA E + + +++D M G Sbjct: 17 MKKILFADDDPEIREVVRILLARDGYEVVEAVNGIEAVEKA--DHTIDLIILDVMMPGCS 74 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R+ + + +L + G AG + +L+KPF+ L+ + + Sbjct: 75 GVEACGEIRKK---SSAPILFLTAKSRDRDKEEGFAAGGDDYLVKPFSSVELKARVNAML 131 Query: 119 QM 120 + Sbjct: 132 RR 133 >gi|302878235|ref|YP_003846799.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302581024|gb|ADL55035.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 636 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ K+ + G V A + EA ++ +P +V D M + Sbjct: 324 RVLVVEDDPATLKLLDAMLKSAGHTVALAANGLEALRMIRQQ-VPQLIVSDWMMPEMDGL 382 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +++ L + E++I AGA+ +LLKP + + +R ++ Sbjct: 383 SLCRKLRESDAWRNIYTVILTAQESPERLIQAFEAGADDYLLKPISPKIFLARLRAAHRV 442 Query: 121 QKSKDEN 127 + + E Sbjct: 443 IQMQAEL 449 >gi|126661523|ref|ZP_01732571.1| regulatory components of sensory transduction system [Cyanothece sp. CCY0110] gi|126617189|gb|EAZ88010.1| regulatory components of sensory transduction system [Cyanothece sp. CCY0110] Length = 458 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD KV + + V +A A E + E P+ +++D M Sbjct: 5 TILIVDDQLPNLKVLSTMLEGKNYKVRKAVDGESAIEAVQIEP-PDLILLDIKMPNIDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ DV + ++ + + G ++ KPF E + + + Sbjct: 64 EVCQRLKSDDKTKDVPIIFISALSEVFDKVKAFEVGGIDYITKPFQEEEILARINSQLTI 123 Query: 121 QKSKDENQF 129 +K + Q Sbjct: 124 KKQQKLLQQ 132 >gi|75675624|ref|YP_318045.1| response regulator PleD [Nitrobacter winogradskyi Nb-255] gi|74420494|gb|ABA04693.1| response regulator receiver modulated diguanylate cyclase [Nitrobacter winogradskyi Nb-255] Length = 457 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + F V A++ +A E C + + +++D M + F Sbjct: 4 RVLVVDDVPANVRLLEARLSAEYFDVLTASNGAQALETCARAEC-DIILLDVMMPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKANPATHFIPVVMITALDNPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRLRA 133 Score = 72.9 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 2/111 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + + + V EA + +V + L Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAVDVEADPSEALFRAAESNYDLLIVSLGLENFDGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + R + V + + +++ G G N +LL+P +R L Sbjct: 216 LCSQARSLERTRHVPILAVADADGSPRLLRGLEIGINDYLLRPIDRNELLA 266 >gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum] gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++V+ + ++ R+ G+ V +A KE +P+ +V+D + G + Sbjct: 4 RIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRL-KEHIPDLIVLDWMLPGLSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ L + Sbjct: 63 ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 121 QKSKDENQFLD 131 + L Sbjct: 123 ASPERLATVLA 133 >gi|94309460|ref|YP_582670.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353312|gb|ABF07401.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Cupriavidus metallidurans CH34] Length = 244 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R GF V + + + P +V+D M V Sbjct: 7 TQILVVDDDPELRDLLREYLTSQGFAVSVLHDG-DGLQARLERERPALIVLDLMMPKVDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A D+ V L D I G GA+ +L KPF+ L + + + + Sbjct: 66 LTALRNLRAKNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125 Query: 122 KSK 124 ++ Sbjct: 126 LAR 128 >gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 225 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 61/133 (45%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +RK+ + + + + EA + +A K + +++D + + Sbjct: 1 MEKILIVEDEAKIRKLIKSYLAEE-YKLKEAANGKKALSLF-KNNNFDLIILDLMLPKIS 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++RQ+ +D+ + L + E IAG GA+ +L KPF+ L ++ L Sbjct: 59 GEEVCQNIRQI---SDIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALL 115 Query: 119 QMQKSKDENQFLD 131 + ++ + + Sbjct: 116 RRSQNVKKANVIA 128 >gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1] gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1] Length = 239 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|262273464|ref|ZP_06051278.1| copper-sensing two-component system response regulator CpxR [Grimontia hollisae CIP 101886] gi|262222442|gb|EEY73753.1| copper-sensing two-component system response regulator CpxR [Grimontia hollisae CIP 101886] Length = 240 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + + L G+ V A + E + + + +++D M + Sbjct: 10 MANILLIDDDTELTSLLHDLLELEGYQVEIANNGQEGLDKISDQT--DLVLLDVMMPVLN 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V L + + + G GA+ +L KPF+ L MR + + Sbjct: 68 GM-ETLRRLRDSWETPVLMLTAKGEEIDRVMGLELGADDYLPKPFSDRELLARMRAILRR 126 Query: 121 QKSKDENQFLDA 132 E + + Sbjct: 127 TAKHGEGKRSEE 138 >gi|134287657|ref|YP_001109823.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132307|gb|ABO60042.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 312 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + G++V A S +A + + + P+ +++D M + F Sbjct: 2 ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 60 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + V ++ + E ++ G R G ++ KP E L + + Sbjct: 61 TCLRIKKDGRHEHLPVIFMTALTESEHVVHGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120 Query: 122 KSK 124 +++ Sbjct: 121 RAQ 123 >gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 227 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V +A E + + E + +++D + + Sbjct: 4 KKILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEP-FDLIILDIMLPHING 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 I +R++ + + + L + + + G GAN ++ KPF E L +R + Sbjct: 63 -IEVLRKIRQTSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAG 121 Query: 120 MQKSKDEN 127 Q EN Sbjct: 122 RQLVSKEN 129 >gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae] gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae] Length = 231 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+ D + + G+ V + + E + + + + L++D M Sbjct: 1 MKNITILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQP-IDLLILDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + F R ++ + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGFEVTRRIREKH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|117925634|ref|YP_866251.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117609390|gb|ABK44845.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 252 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ +R++ GF+ + RE ++ P+ +V+D + G Sbjct: 14 ILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRA-RPDLVVMDLMLPGEDGLT 72 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++R + + L V+ I G GA+ +L KPFN L + + + Sbjct: 73 LTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVMRRA 132 Query: 122 KSK 124 +S+ Sbjct: 133 RSE 135 >gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 225 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L++D + K+ R FN F VF A + E L + +++D + Sbjct: 4 KKILIIDDDLQITKILRDYFNYENFEVFVAHDGQKGLEKI-NNLEIDIIILDLMLPKKNG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ ++ + + L + I G GA+ ++ KPF+ + L ++ + + Sbjct: 63 LDICRQLK---PHNKIPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLK 119 Query: 120 MQKS-KDENQF 129 + +D+N+ Sbjct: 120 RINNDQDQNEL 130 >gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF + +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAF-RETKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|224536093|ref|ZP_03676632.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM 14838] gi|224522312|gb|EEF91417.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM 14838] Length = 1346 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ + + V EA A +E +P+ ++ D M + Sbjct: 1097 RILVVEDDEDMRQYIVSKLSKT-YNVQEAPEGKSAIHIA-REQMPDLIISDIMMPVMDGL 1154 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L + E + G +A A+ ++LKPFN + L + L + Sbjct: 1155 ELCRAIKNDMALAHIPVVLLTAKSLEEHVKDGYQALADDYILKPFNAQILLAKIESLIKN 1214 Query: 121 QKSKDEN--QFLD 131 ++ + Q L+ Sbjct: 1215 REKLRDLFCQKLE 1227 >gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 231 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + +V + GF V T+ + +KE P+ +++D + G+ Sbjct: 3 KKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++V + L +V I G GA+ ++ KPF+ L ++ + + Sbjct: 62 EELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 215 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L+LVD + + + G+ V A + EA E E E +P+ ++ D M + Sbjct: 10 KHLMLVDDDPNLILLVKDYLEFRGYQVITAENGREALELLE-EQIPDLIICDVMMPQMNG 68 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + H+R+ V V +L + + + G GA+ +++KPF E L + + Sbjct: 69 YNLVQHIRENLATEWVPVLFLSAKGQIQDRVKGLNTGADVYIVKPFEPEELVAQVESSLK 128 Query: 120 M 120 Sbjct: 129 Q 129 >gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 248 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ V A + A +E+ P+ +V+D + Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSA-QEIDPDVIVLDIMLPDFDGL 76 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L + E +AG AG + ++ KPF+ E + +R L + Sbjct: 77 EVMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136 Query: 123 SKDE 126 + +E Sbjct: 137 ASEE 140 >gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + E+ + +++D M + F Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMD-EVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 223 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA E E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 248 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A + A ++ P+ +V+D + + F Sbjct: 23 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTA-RQFQPDAVVLDVMLPDLDGF 81 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V V +L E +AG G + ++ KPF+ E + +R L + Sbjct: 82 AVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 139 >gi|149195677|ref|ZP_01872734.1| response regulator receiver domain protein (CheY-like) [Lentisphaera araneosa HTCC2155] gi|149141139|gb|EDM29535.1| response regulator receiver domain protein (CheY-like) [Lentisphaera araneosa HTCC2155] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++++ + G+ V +A + E P+ +++D + G+ Sbjct: 3 KRVLVVDDEPDIQELLKLTLGKEGYDVICTGDGSKAIKMTETH-APDLIILDGMLPGMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ ++ + L D I G R GA+ ++ KPF+ + L + + Sbjct: 62 NDICYRLKNDKSTANIPIIMLSARTDETDQIIGIRLGADDYITKPFSPKVLSAKVSATIK 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius UCC118] gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator phoP [Lactobacillus salivarius UCC118] gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741] Length = 233 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ G+ V + +A + +++++D + G+ Sbjct: 1 MAKVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKY-DFIILDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++ L + D I G GA+ +L KPF+ + ++ + + Sbjct: 60 GIEITKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRR 119 Query: 121 QKSKDEN 127 + +N Sbjct: 120 VEHYSDN 126 >gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 239 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + E E+ + L++D + GV Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 124 DALARDSRIDA 134 >gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 240 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + +V+D + G Sbjct: 7 KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQ-MDRLLERENFHLMVLDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ D+ + L + D I G GA+ +L KPFN L + + + Sbjct: 66 SICRRLRQQEN--DMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123 Query: 121 QKSKD 125 + S+ Sbjct: 124 RSSEA 128 >gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 225 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + G+ V +E P+ +++D + G+ Sbjct: 5 NILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNA-RESDPDLILLDWMLPGMSGV 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G +V + L + D +AG AGA+ +++KPFN E L +R + + Sbjct: 64 DICKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQ 123 Query: 123 SKDEN 127 D + Sbjct: 124 QDDPD 128 >gi|117926854|ref|YP_867471.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117610610|gb|ABK46065.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 564 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 8/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD I + L G VF A + E E P+ +++D M + Sbjct: 1 MK-ILIVDDDRINSTILTRLLEKDGHKVFTAPNGQRGVELFSDE-RPDLVLMDIRMPLMN 58 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + V + +L D E + AG + FL KPFNR L+ + + Sbjct: 59 GYEAARRIKSLSPNRFVPIIFLTAVTDDEGLAKCIDAGGDDFLTKPFNRTILQAKIGAME 118 Query: 119 QMQK----SKDENQFLD 131 ++ + +++ + L+ Sbjct: 119 RIGQLHGVLREQKELLE 135 >gi|226942667|ref|YP_002797740.1| osmolarity response regulator [Azotobacter vinelandii DJ] gi|226717594|gb|ACO76765.1| two-component response regulator OmpR [Azotobacter vinelandii DJ] Length = 246 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ G+ V +V + + L N +V+D + G Sbjct: 13 KILVVDDDPRLRHLLERFLSEQGYRVRAVENVEQ-MDRLLGRELFNLVVLDLMLPGEDGM 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R V + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 72 SACRRLRASDNQVSIIMLTAKGDEGSRIQGLEQGADDYLAKPFNPRELLARIKAVLRRQ 130 >gi|319936818|ref|ZP_08011230.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus sp. 29_1] gi|319808086|gb|EFW04658.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus sp. 29_1] Length = 233 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ VR + + A++ A P+ +++D + + Sbjct: 6 TILVVEDDSAVRNLISTTLQAHNYKYLLASNGETAILEASSHN-PDIILLDLGLPDIDG- 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +++ + + + I GA+ +L KPF+ E L +R + Sbjct: 64 IEIIKKVRSWSNMPIIVISARSEDSDKIEALDVGADDYLTKPFSVEELLARLRVTLRR 121 >gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] Length = 233 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + F G+ V A EA F + + +++D M + F Sbjct: 4 KILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTY-SLILLDIMMPKLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ V L D + G GA+ +++KPF+ L ++ + + Sbjct: 63 -DTLKEIRKSHKTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLRR 119 >gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVIFEQEKV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +K+ + Sbjct: 119 SRKASKK 125 >gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159] gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159] Length = 224 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + K+ G V A E+E P+ +++D + G Sbjct: 1 MAHILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEH-PDLVILDLMLPGTH 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + L D ++ G GA+ ++ KPF L +R L Sbjct: 60 GRDVCRALRLRHA---TPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 240 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ ++R + ++ G+ V +A + E +E P+ +++D + + Sbjct: 1 MYKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIV-QEFAPDVVLLDLMLPDMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R+ + V + L M+ + + + +AGA+ ++ KPF+ + + L Sbjct: 60 GMGVCASIRER---SHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALI 116 Query: 119 QMQK 122 + + Sbjct: 117 RRSQ 120 >gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Paenibacillus polymyxa SC2] gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Paenibacillus polymyxa SC2] Length = 224 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ H G V EA +A + E + LV+D M G+ Sbjct: 1 MTRVLVVDDDPHIRELVGHFLRLEGLEVVEAVDGLDAMRLFD-ETKVDLLVLDIMMPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ TD+ + L + + +++ G G + +L+KPF+ L ++ L Sbjct: 60 GWELCRKLREQ---TDLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALL 116 Query: 119 QMQK 122 + + Sbjct: 117 KRYR 120 >gi|300868158|ref|ZP_07112790.1| Two-component response regulator [Oscillatoria sp. PCC 6506] gi|300333782|emb|CBN57970.1| Two-component response regulator [Oscillatoria sp. PCC 6506] Length = 460 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ ++R+ L F V + + E +P+ ++ D M Sbjct: 1 MIKILVIEDESLIRETLVELLEAHDFRVSAVENGRMGVKVALSE-IPDLILCDVQMPDLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +RQ L + V +L + + G GA+ +L KPF +E L A+ + Sbjct: 60 GYEVLKALRQNRLTSAVPFIFLTAQSAKAEFRRGMELGADDYLTKPFTKEELLGAIASIL 119 Query: 119 QMQKSKDE 126 +K+ + Sbjct: 120 SKRKTITQ 127 >gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601] gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601] Length = 230 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 56/127 (44%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+ D + + + + G+ +++A + EA E ++ +P+ +++D M + Sbjct: 1 MTSILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIV-QDKMPSLVILDVMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + L + + I G GA+ +++KPFN L ++ + + Sbjct: 60 GLEVCKKMRNENILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILRR 119 Query: 121 QKSKDEN 127 ++ N Sbjct: 120 IQNIQAN 126 >gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + ++ R D G+ V A + E+ + LV+D + G+ Sbjct: 5 KRVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNW-DALVLDLMLPGIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRRT 123 Query: 122 KSKDENQFLDA 132 + N +++ Sbjct: 124 DALARNARMES 134 >gi|119946934|ref|YP_944614.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] gi|119865538|gb|ABM05015.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] Length = 711 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD R + R F V EA A E + P+ +++D M G+ Sbjct: 1 MTRVLVVDDDITARLMARQALGKENFAVIEAEDGFAALALFEA-VQPDIVLLDVEMPGMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ P G V + + D + + AGA F+ KPFN + L +R + Sbjct: 60 GFEVCRQLRRFPCGKLVPILMATGQDDLDSVRQAYEAGATDFVTKPFNWKILAHRLRYMV 119 Query: 119 QMQKSKDENQFLD 131 + ++ + L Sbjct: 120 RASDITEQLEELQ 132 >gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 245 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD R G+ V A EA E P+ +V D M + Sbjct: 22 TILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEV-YHPDLIVTDIVMPRMNGY 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + VRQ P + V L ++ I G ++G + +L KPF E L A+ L + Sbjct: 81 ELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIHNLLER 140 Query: 121 QK 122 + Sbjct: 141 SQ 142 >gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 228 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTTPDIALMILDVMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +D+ + + + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 + + +++ Sbjct: 119 SQKQVKDE 126 >gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044] gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43] gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185] gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088] gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43] gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088] gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185] gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 244 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 11 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 70 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 129 Query: 123 SK 124 ++ Sbjct: 130 NE 131 >gi|323493471|ref|ZP_08098593.1| response regulator [Vibrio brasiliensis LMG 20546] gi|323312294|gb|EGA65436.1| response regulator [Vibrio brasiliensis LMG 20546] Length = 376 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD + R + L + V AT+ +A E LP+ +++D M + Sbjct: 7 SVLVVDDNAENRVLLSGLLKPH-YKVLVATNGKQALSLAES-KLPDIILLDIMMPEMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V +L + E G GA ++LKP + L + ++ Sbjct: 65 EVCLRLKDNSDTAFIPVIFLTAKTQIEDEQRGFEVGAVDYILKPISPPILLARIATHLKL 124 Query: 121 QKSKDE----NQFLDA 132 + + DE N+ L+ Sbjct: 125 RGAMDELSHQNEILEE 140 >gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602] gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 239 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|294636746|ref|ZP_06715086.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685] gi|291090047|gb|EFE22608.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685] Length = 263 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 4/133 (3%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD VR++ G A+ EA + + P+ +++D M Sbjct: 1 MKARYRILIVDDEDNVRRMLTTALTLQGHETLTASHGAEALQRF-TDTPPDVVLMDIRMP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + A V + + E I R+GA +++KPF+ + L ++ Sbjct: 60 TMNGIDALKIMRTRRPRTPVILMTAYAEVETAIEALRSGAFDYVIKPFDLDELNLLIQRA 119 Query: 118 PQMQKSKDENQFL 130 Q+Q K E + L Sbjct: 120 LQLQAMKQEIRSL 132 >gi|253999818|ref|YP_003051881.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|313201791|ref|YP_004040449.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|253986497|gb|ACT51354.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] gi|312441107|gb|ADQ85213.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 245 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R++ + ++ GF V + E + LV+D + Sbjct: 9 KKILMVDDDLRMRELLQRYLSEQGFSVKTVSDSTE-MNTVLSSEHIDLLVLDLMLPSEDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G+ + + L D I G GA+ +L KPFN L + + + Sbjct: 68 LAICRRLRAAGSTMPIIMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVMRRN 127 Query: 122 K 122 + Sbjct: 128 E 128 >gi|254514188|ref|ZP_05126249.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR5-3] gi|219676431|gb|EED32796.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR5-3] Length = 236 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 ++L+VD +R + R + EA ++ +A + P+ +++D + G Sbjct: 4 RTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQ-RPDIVLLDWMLPGGSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E + +++ ++ V L + + +I G GA+ ++ KPF L ++ L + Sbjct: 63 IELLRRLKRDETTREIPVIMLTAKTAEDNVIQGLEVGADDYMTKPFAPRELIARIKALLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|209524683|ref|ZP_03273230.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209494827|gb|EDZ95135.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 227 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V +A +A + + L++D + L Sbjct: 2 RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQA-GTLAQNHHYDLLILDWMLPHQSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A +R + +L + + + G AGA+ +L+KPF L +R L + Sbjct: 61 EICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38] gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 7/126 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + + G+ + A++ EA +KE LP +++D M Sbjct: 1 MKKKDIKILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKE-LPQLIIMDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R+ P D + +L + +AG AGA+ ++ KP + L + Sbjct: 60 PEMDGMEACEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIAKPIKPKVLVSKV 119 Query: 115 RELPQM 120 + L + Sbjct: 120 QALLRR 125 >gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01] gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B] gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01] gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B] Length = 239 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|77919324|ref|YP_357139.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545407|gb|ABA88969.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 227 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + GF V A + L + +++D + G+ Sbjct: 2 RILIVEDQEDILQNIADYLHLHGFTVDCAQNGLGGLHLAVT-LEFDLIILDIMLPGMDGL 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ G V +L E +AG +AG++ +L+KPF+ L + + + Sbjct: 61 TLCRKLRK-EAGVQTPVIFLTARDKLEDKLAGFKAGSDDYLVKPFSLPELHARVEAVLRR 119 Query: 121 QKSKDENQFLDA 132 + N+ A Sbjct: 120 SQPVQSNRLQVA 131 >gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 213 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LLLVD + + + G+ V A + EA + +P+ +V D M + Sbjct: 10 LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLL-TTTVPDMIVCDIMMPEMDGYA 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 FI VRQ P + + V +L + + G GA+ ++ KPF E L ++ + Sbjct: 69 FIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ 127 >gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + + R+ + G+ V A EA KE P+ +++D + Sbjct: 4 KILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKED-PDLILLDIMLPKQDGF 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + + G GA+ ++ KPF+ L ++ + Sbjct: 63 SVCKKLREKITS---PIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRR 119 Query: 121 QKSKD 125 + Sbjct: 120 IALSE 124 >gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae CIP 101886] gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae CIP 101886] Length = 238 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQ-MDRLLSRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRQANNQLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123 >gi|187933189|ref|YP_001885183.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum B str. Eklund 17B] gi|187721342|gb|ACD22563.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum B str. Eklund 17B] Length = 235 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + + A + A +P+ +++D + Sbjct: 1 MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVS-YVPDIVILDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I ++++ ++V + + + I GA+ +L KPF+ E L +R Sbjct: 60 MDG-IEIIKRIRTWSNVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ + + + G+ V A++ + + ++ P+ L++D + + Sbjct: 5 ILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIA-RDSSPDLLILDWMLPVISGLD 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R G + + L + + + G AGA+ ++ KPF+ E L ++ + + Sbjct: 64 LCLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRRTHA 123 Query: 124 KDEN 127 +D N Sbjct: 124 QDLN 127 >gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2M] gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2] gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2] gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2M] Length = 272 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + + E+ + L++D + GV Sbjct: 38 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGW-DALILDLMLPGVDG 96 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 97 LEICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 156 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 157 DALARDSRIDA 167 >gi|329957618|ref|ZP_08298093.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328522495|gb|EGF49604.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 1492 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 LLV+ + +R R +F + + EA + E + K LP+ ++ D M Sbjct: 1222 LLVEDNSELRIFLRSIFASE-YRIVEAANGVEGLDKALK-FLPDIIISDVMMPEKDGIAM 1279 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ ++ L Q Q Sbjct: 1280 TRELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLAQRQ 1339 Query: 122 KSKD 125 K + Sbjct: 1340 KLQA 1343 >gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 238 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A A + + + +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SLVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LIRR 120 >gi|146298307|ref|YP_001192898.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152725|gb|ABQ03579.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 227 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ + G+ + A++ +A +KE LP +++D M + Sbjct: 6 TKILLVDDEPDILEIVGYNLAQEGYQIVTASNGKDAIAKAQKE-LPELIIMDVMMAEMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 H+R++P +V + +L + +AG AGA+ ++ KP + L ++ L + Sbjct: 65 MEACEHIRKIPELNNVIITFLTARSEDYSQVAGFDAGADDYITKPIKPKLLVSKVKALLR 124 Query: 120 MQKSKD 125 K ++ Sbjct: 125 RLKEQE 130 >gi|186683397|ref|YP_001866593.1| AraC family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465849|gb|ACC81650.1| two component transcriptional regulator, AraC family [Nostoc punctiforme PCC 73102] Length = 272 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + R++ GF A + + E P+ + D M Sbjct: 1 MIKVLIIEDEQLTREMLLDYLESEGFETMSAKNGRIGVQKV-HEHRPDLAICDIMMPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + Q P + +L + + ++ G GA+ +L+KPF E L A+ Sbjct: 60 GYGVLKTLHQNPTTAVIPFIFLTGKSNKAEIRQGMALGASDYLIKPFTPEELLGAIAAQL 119 Query: 119 QMQKSKDE 126 + Q + Sbjct: 120 KKQAILKQ 127 >gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + + G+ V A E E +++++D + + Sbjct: 1 MKKVLIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPY-DFIILDLMLPSMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +RQ + + + L + D + I G GA+ ++ KPF+ + M+ + Sbjct: 60 GMDICKKLRQEKI--EAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIM 117 Query: 119 QMQKSKDENQ 128 + SK + + Sbjct: 118 RRMSSKSKAE 127 >gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 234 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 53/134 (39%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD + ++ R F V A +A ++ + + +V+D M G Sbjct: 5 RTILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPV-HGIVLDVMMPGQNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R V + +L + I G G + +++K + + ++ + + Sbjct: 64 FELCRTIRSSSS---VPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 120 Query: 120 MQKSKDENQFLDAI 133 ++ E + A+ Sbjct: 121 RSSAQQEQERSLAV 134 >gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 228 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITTPDIALMILDIMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +D+ + + + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-IEVIKEVRKDSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 + + +++ Sbjct: 119 SQKQVKDE 126 >gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + GF V + E + ++D + GV Sbjct: 1 MSKILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEE-FDLFILDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + V + + D I G GA+ ++ KPF+ + ++ Sbjct: 60 GFEICKKIRE---TKNTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHL 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896] Length = 239 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD + K + N + V A EA + + + +++D M + Sbjct: 5 TILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQK-IDLILMDIMMPKKNGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + + L + + I G GA+ ++ KPFN L + + + Sbjct: 64 DTTMLIRQESI---IPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLRR 120 >gi|288942102|ref|YP_003444342.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288897474|gb|ADC63310.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 304 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD +V + V ATS +A E + P+ +++D M + Sbjct: 12 SILIVDDLPANIRVLADTLKS-DYRVRVATSGLKALEVAAGDPPPDLILLDVMMPEMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + + ++ + + E+ G GA ++ KPF+ +R +R + Sbjct: 71 EVCRRLKDDPRTSTIPIIFVTAKDEAEEEARGLELGAVDYITKPFHLPIVRARVRTHVNL 130 Query: 121 QKSKDENQFLDAI 133 ++ D L ++ Sbjct: 131 KRKTDLLDSLASL 143 >gi|218440687|ref|YP_002379016.1| response regulator receiver protein [Cyanothece sp. PCC 7424] gi|218173415|gb|ACK72148.1| response regulator receiver protein [Cyanothece sp. PCC 7424] Length = 124 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + G+ V A A +E +P+ L++D + + Sbjct: 1 MYHILLIDDEEPLLASLSFYLIKEGYKVTTAADGLTAL-KVIQENMPDILILDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R +DV + L + + G ++GA+ ++ KPF+ L + + + Sbjct: 60 GIELFWRIR-AFSDVPILMLTAKDHEADKVWGLKSGADDYVTKPFSTRELIARIEAILRR 118 >gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 228 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A E+ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRSRSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|126650201|ref|ZP_01722429.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905] gi|126592851|gb|EAZ86833.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905] Length = 1021 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD I +V + + + + TS +A + + ++ D M + Sbjct: 689 RILVVDDEPINLRVVETILANEQYDIVTVTSGLDALVSIQSHEW-DLVISDVMMPKMSGY 747 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ TD+ + L + + G AGAN ++ KP + LR + L ++ Sbjct: 748 ELVRLIRKQFSITDLPILLLTARSQPQNLEKGFLAGANDYVTKPVDALELRSRVAALIKV 807 Query: 121 QKSKDENQFLDA 132 ++S E ++A Sbjct: 808 KRSIQERHRMEA 819 >gi|28868489|ref|NP_791108.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213968377|ref|ZP_03396521.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato T1] gi|301384643|ref|ZP_07233061.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058904|ref|ZP_07250445.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato K40] gi|302133017|ref|ZP_07259007.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851727|gb|AAO54803.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213927015|gb|EEB60566.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato T1] gi|331015226|gb|EGH95282.1| sensory box protein/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 705 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR + L + G+ A S +A + P+ +++D M G+ + Sbjct: 7 TILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDA-RAPDLILLDIMMPGMDGY 65 Query: 63 IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + ++G AGA +L KP L +R L ++ Sbjct: 66 EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus M045] gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus M045] Length = 249 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LL + +R G+ V EA + P+ L++D M G+ Sbjct: 3 QTVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTP-PDVLLLDVMMPGIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R G + L V+ IAG AGA+ +++KPF+ E + +R L + Sbjct: 62 LQVCRVLRA--EGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 227 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074] gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074] Length = 223 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 8/132 (6%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V A + E + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDEN--QFLDA 132 +E Q L+A Sbjct: 118 EPEEAVPQALEA 129 >gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + R + GF V EA E+ + +V+D + G+ F Sbjct: 2 RVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQA-SEIAYDVIVLDLMLPGLDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L + + G GA+ +L KPF+ + L +R L + Sbjct: 61 EVCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRR 118 >gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 230 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R + + GF A E E +K LP+ +++D M G F Sbjct: 9 ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKN-LPDLILLDIMMPGEDGFS 67 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR V V +L + + + G + G + +++KPF+ L + + + Sbjct: 68 VCERVRAQYE---VPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRS 124 Query: 122 KS 123 S Sbjct: 125 GS 126 >gi|313679062|ref|YP_004056801.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313151777|gb|ADR35628.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 228 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + V GF+ A + A E P+ +++D + G Sbjct: 7 KRILVVEDEARIADVLERYLRAEGFVTERAATGKRALELWRA-FRPDLILLDLMLPEIGG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R +DV + + + + + G GA+ ++ KPF+ + +R + + Sbjct: 66 LEVARTIRAQ---SDVPILMVTAKAEEVDRLVGLELGADDYITKPFSPREVVARVRAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 668 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL + + R G V A EA + + +++D M L Sbjct: 546 RILLAEDEPVNRIFTVRALTKLGHQVETAVDGREALALLGRAP-FDLVLMDIQMPRLNGL 604 Query: 61 EFIAHVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + +R L + V L G AG + ++ KPF + L AM Sbjct: 605 DATRMIRSGQVPGLSASIPVVALTAYAMDSDRERGLEAGMDEYVTKPFEPQELVAAMERA 664 Query: 118 PQMQ 121 + + Sbjct: 665 LRKE 668 >gi|301301253|ref|ZP_07207408.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851129|gb|EFK78858.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 223 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ G+ V + +A + +++++D + G+ Sbjct: 1 MAKVLVVDDEQAITTLLKYNLEKAGYEVKIVNNGNDALDEGLTGKY-DFIILDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++ L + D I G GA+ +L KPF+ + ++ + + Sbjct: 60 GIEVTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRR 119 Query: 121 QKSKDEN 127 + +N Sbjct: 120 VEHYSDN 126 >gi|284053870|ref|ZP_06384080.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] Length = 286 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G + AT+ EA E + P+ +++D M + F Sbjct: 8 TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEA-IQPDLILLDIVMPKMDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q P ++ V + D + G GA ++ KPF E + + ++ Sbjct: 67 ETCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHLKI 126 Query: 121 QKSKDEN 127 + + Sbjct: 127 RYLTQQL 133 >gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 234 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ V L + + + + G G + +L+KPF+ L ++ L + Sbjct: 72 DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 Query: 121 QK 122 + Sbjct: 129 YQ 130 >gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 224 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R G+ V AT A + +E P+ +++D + + Sbjct: 1 MTFVLVVDDEPAICRTLRINLKARGYEVETATDGRSALQIA-RERTPDVVILDLGLPDID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V L + + AGA+ ++ KPF + +R + Sbjct: 60 GVTVLSKLREFCAS-PVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRR 118 Query: 121 QKSKD 125 D Sbjct: 119 TGLVD 123 >gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 231 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M S+LLVD + + GF AT+ +A + +P+ +V+D + Sbjct: 1 MTSVLLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRR-RIPDLVVLDLMLPDVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ V V L + + + G GA+ ++ KPF+ L ++ L Sbjct: 60 GTEVCRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALA 119 Query: 119 QMQKSKDENQF 129 + + + Sbjct: 120 RRTGAGRPAER 130 >gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 6/120 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + GF A A E C P+ +++D + Sbjct: 1 MPRILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRT-TAPDLVILDRMLPLVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++ + L + G R GA+ ++ KPF+ L + + Sbjct: 60 GAEICRRLRA---AGNIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAVL 116 >gi|71066478|ref|YP_265205.1| two component transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039463|gb|AAZ19771.1| two component transcriptional regulator, winged helix family [Psychrobacter arcticus 273-4] Length = 234 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---VL 60 +L+V+ +R++ GF +A V EA + P +++D + G + Sbjct: 6 ILIVEDEAAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDH-RPALILLDWMLPGDKSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F ++ L +++ V L + + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DFCRMLKNDALLSEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRR 124 Query: 121 QKSKD 125 + Sbjct: 125 SSALS 129 >gi|150390837|ref|YP_001320886.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950699|gb|ABR49227.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 236 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + ++ R GF + + +A E + P+ +++D + + Sbjct: 4 TKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQN-PDLILLDLMLPDIDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + L + + + G GA+ ++ KPF L +R + + Sbjct: 63 LEVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 239 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] Length = 227 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + + GF V +AT+ + KE P LV+D + G Sbjct: 5 TILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLA-KEKKPALLVLDLMLPGLEGQ 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++Q + V L I G GA+ +L KPF+ L +R + + Sbjct: 64 EVCRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRR 123 Query: 121 QKSKDEN 127 Q +E Sbjct: 124 QTGPEEQ 130 >gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + + GF V+ A K+ P+ +++D +M G+ Sbjct: 3 TRVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGL-AATKKYQPHLVLLDIAMPGLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R LG D+ + L D + GA+ ++ KPF+ + L MR + + Sbjct: 62 LELCRRLHVLG-DIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRH 120 Query: 122 KSKDEN 127 E Sbjct: 121 TGSQEM 126 >gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126] gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126] gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] Length = 229 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V A + E E E + +++D + + Sbjct: 3 KRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ D ++ + ++AG GA+ +++KPF E L +R + Q Sbjct: 62 FEVT-RRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQ 120 Query: 122 KSKD 125 + Sbjct: 121 DIEA 124 >gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica] Length = 239 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] Length = 227 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + ++ + GF V A +E P+ +++D + + Sbjct: 3 KKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEEN-PDLIILDLMLPEISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L + + G GA+ ++ KPF + L ++ + Sbjct: 62 WDVCREIRKE---SHVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLR 118 Query: 120 MQK 122 + Sbjct: 119 RSE 121 >gi|300868512|ref|ZP_07113131.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300333501|emb|CBN58319.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 431 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ L + G+ V A S A E C + L P+ +++D M + F Sbjct: 11 TILVVDDNSENIELLADLLSGVGYQVAIAKSGKAALE-CLEFLQPDIILLDVMMPEIDGF 69 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ + ++ D + G GA ++ KP E +R Q+ Sbjct: 70 ETCRQIKSNLANRDIPIIFMTALSDSVNKVKGLSMGAVDYITKPIEYEETLVRIRIQLQV 129 Query: 121 QKSKDENQ 128 + S+ + + Sbjct: 130 RDSQKQLE 137 >gi|298505432|gb|ADI84155.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 461 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+V + + G+ V A S E + E P +V D M G+ F Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFD-ERSPALVVTDLKMPGMGGF 68 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ D V + E + +AGA ++ KPFNR+ L+ +++ +M Sbjct: 69 RLLQEIKGRS--PDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALKLTVKKALEM 126 Query: 121 QKSKDENQFL-DAI 133 EN+ L +A+ Sbjct: 127 LGLSRENRRLREAL 140 >gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R++ GF V + +A +E P+ +V+D + F Sbjct: 6 RLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAV-REQRPDLIVLDVMLPDFDGF 64 Query: 63 IAHVRQMPLGT-----DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 R V +L E I+G RAG + ++ KPFN E L +R + Sbjct: 65 EVVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124 Query: 118 PQMQKSKDENQFL 130 + + + L Sbjct: 125 LRRTSGRQADGRL 137 >gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 228 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R+ + + V A E E + + +++D M + Sbjct: 1 MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSN-FYDLILLDLMMPKLS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +++ + L + + GA+ +L KPF E L +R Sbjct: 60 GEEVCKIIRK---TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVAL 116 Query: 119 QMQKS 123 + + + Sbjct: 117 RNKSN 121 >gi|157363872|ref|YP_001470639.1| response regulator receiver protein [Thermotoga lettingae TMO] gi|157314476|gb|ABV33575.1| response regulator receiver protein [Thermotoga lettingae TMO] Length = 124 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD S ++RK+ G+ V EA EA E +E P+ +++D M + F Sbjct: 4 RVLVVDDSEVLRKIVSFNLIKEGYSVQEAKDGREALEKLRQEK-PDLVILDIMMPYIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ ++ V L + GANSFL KPF+ L +R + Q Sbjct: 63 EVLRTMRKDENLKEIPVIMLTAKGGESDPKTALELGANSFLTKPFSPLKLLEEVRRVIQR 122 >gi|148976493|ref|ZP_01813189.1| osmolarity response regulator [Vibrionales bacterium SWAT-3] gi|145964069|gb|EDK29326.1| osmolarity response regulator [Vibrionales bacterium SWAT-3] Length = 239 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 225 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + + F VFEA + EA EF K + +++D M + Sbjct: 4 KILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFL-KNDKISLMILDIMMPEMDG- 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 I ++ + D + +L + + I G GA+ +L KPF+ L + L + Sbjct: 62 IEVLKTIGNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNN 121 Query: 123 SKDEN 127 + N Sbjct: 122 HRSNN 126 >gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+++ +H + +V + F + + V A + + +V+D + G+ Sbjct: 1 MK-LLVIEDNHDLVQVLQEGFEEHDYAVEAAYEGETGLNRA-RSGEFDCIVLDVMLPGMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R G D V L + + + G GA+ +L+KPF+ + L + L + Sbjct: 59 GFELIDRFREEGHDTPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALIRR 118 Query: 121 QKSKDE 126 + Sbjct: 119 HSEQRR 124 >gi|300853883|ref|YP_003778867.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433998|gb|ADK13765.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 7/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R + F F+V EA++ A E E P ++D + G+ Sbjct: 1 MKKVLIVEDEASIRGFLKINFKRNKFIVIEASTGERALEKARVEN-PIVTILDVMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L I G GA+ +++KPFN + L + L Sbjct: 60 GFKTCEILRR--EFPKMGIIMLTARSQDTDKIMGFGFGADDYVIKPFNPQELIARVNALL 117 Query: 119 QMQKSK--DENQFL 130 + + +N+ L Sbjct: 118 RRIGLQSDSKNEVL 131 >gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 238 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + D G V + E+ + LV+D + GV Sbjct: 5 RRILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGW-DALVLDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + ++ L++ Sbjct: 124 DALAQSARLES 134 >gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 225 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|255284065|ref|ZP_05348620.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] gi|255265410|gb|EET58615.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] Length = 235 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 7/127 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+++ +R+ R L G+ V EA + E + + +++D M G+ Sbjct: 4 NNILMIEDDPAIREGVRILLEGEGYHVEEAENGRMGLEKLTENT--HLVILDIMMPGISG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R++ ++V V +L + + G AG + +L+KPF+ L ++ L + Sbjct: 62 IRTCEEIRKV---SNVPVLFLTAKEQESDKVIGLTAGGDDYLVKPFSYAELLARVKALLR 118 Query: 120 MQKSKDE 126 + D+ Sbjct: 119 RRNVYDK 125 >gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 225 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|160892046|ref|ZP_02073049.1| hypothetical protein BACUNI_04506 [Bacteroides uniformis ATCC 8492] gi|156858524|gb|EDO51955.1| hypothetical protein BACUNI_04506 [Bacteroides uniformis ATCC 8492] Length = 1355 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + +R+ + D + + +A + E + PN +V D M + Sbjct: 1094 LLVVEDNADIREYIANELQDT-YKILQANNGKEGLILALR-YTPNIIVSDIMMPEMDGIA 1151 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + LR ++ L +M+ Sbjct: 1152 MCKGIKENMNTSHIPVILLTAKDSIQDKEEGYDSGADSYLTKPFSAKLLRSRIKNLLEMR 1211 Query: 122 KSKDEN 127 K Sbjct: 1212 KRLARQ 1217 >gi|150004703|ref|YP_001299447.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149933127|gb|ABR39825.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1355 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + +R+ + D + + +A + E + PN +V D M + Sbjct: 1094 LLVVEDNADIREYIANELQDT-YKILQANNGKEGLILALR-YTPNIIVSDIMMPEMDGIA 1151 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V L + + G +GA+S+L KPF+ + LR ++ L +M+ Sbjct: 1152 MCKGIKENMNTSHIPVILLTAKDSIQDKEEGYDSGADSYLTKPFSAKLLRSRIKNLLEMR 1211 Query: 122 KSKDEN 127 K Sbjct: 1212 KRLARQ 1217 >gi|86158331|ref|YP_465116.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774842|gb|ABC81679.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 473 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD +R+V + G+ V A +A + + + +V D M G Sbjct: 1 MAHVLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHRTPV-HVVVTDLVMPRVG 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + R DV V + + +A +AGA ++ KPF ++ L+ + + Sbjct: 60 GMELLR--RVSQDFPDVPVILITAHGSVDSAVAALKAGAFDYITKPFEQDELKKVIAKAA 117 Query: 119 QMQKSKDEN 127 + + +N Sbjct: 118 RAHDLERQN 126 >gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 268 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD VR+V G+ V A +A E P+ +V+D + + F Sbjct: 25 TVLVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDE-QPDLVVLDVMLPKLDGF 83 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 84 AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140 >gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20] gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 226 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + +A + E+ P+ +++D + G+ Sbjct: 3 TRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAF-HEVNPDLVLLDLMLPGLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L D + ++AG AGA+ ++ KPF + L + + Sbjct: 62 VEICRLIRSE---SDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|238894841|ref|YP_002919575.1| putative two-component response transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238547157|dbj|BAH63508.1| putative two-component response transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 246 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G+ A + A K + +V+D M G Sbjct: 7 ILVVDDDRDIRELIVDYLEKSGYRASGAANGK-AMWSVLKNHQIDLIVLDIMMPGEDGLT 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P D+ V L D I G GA+ +L+KPF L ++ + + Sbjct: 66 LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRRT 124 Query: 122 KSKDEN 127 ++ N Sbjct: 125 RALPPN 130 >gi|229114181|ref|ZP_04243602.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669201|gb|EEL24622.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 223 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +A S EA E ++ + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELI-QQKKFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + G+ + +A EA + + + +++D + + Sbjct: 6 KILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDIL-RNTTVDLIILDIMLPKMDGI 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + +L + + I G +GA ++ KPFN L ++ + + Sbjct: 65 EACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYR 123 Query: 123 SKDENQ 128 + Sbjct: 124 VYQTEE 129 >gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 224 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ + + G+ V A +E P+ +++D + G +E Sbjct: 5 ILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAA-RESQPDLILLDWMLPGFSGVE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R G V V L + + + G AGA+ +++KPF+ E L +R + Sbjct: 64 VCRRLRA--TGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRRT 121 Query: 122 KSKDEN 127 + +D + Sbjct: 122 QEEDPD 127 >gi|99035891|ref|ZP_01314942.1| hypothetical protein Wendoof_01000220 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 460 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + V A EA + K+ P+ +++D M + F Sbjct: 4 KILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQ-QPDIILLDIMMPKMNGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ PL T + + + D + G AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLTRL 122 Query: 121 QKSKDENQF 129 + DE + Sbjct: 123 KMIIDELRL 131 Score = 78.7 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + ++ + + EA E + ++ D Sbjct: 158 NVLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEAL-KVGIENGYDLIISDMQFSKTDGL 216 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + L + D ++ GAN +L P + L + + Sbjct: 217 RLCSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276 Query: 121 QKSKDENQF 129 ++ +D + Sbjct: 277 KRYQDALRM 285 >gi|127511048|ref|YP_001092245.1| response regulator receiver protein [Shewanella loihica PV-4] gi|126636343|gb|ABO21986.1| response regulator receiver protein [Shewanella loihica PV-4] Length = 120 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ GF V EA + EA + + + ++ D +M + Sbjct: 1 MKKILAVDDSASMRQMVGFTLKTAGFDVTEACNGDEALTQAKSQDY-DLVISDVNMPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I ++R +P + L E EK G AGA +++KPFN + L + ++ Sbjct: 60 GITLIRNLRSLPNYKFTPLLMLTTESGSEKKQEGRSAGATGWIVKPFNPDQLLATVNKVL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L+VD +R++ + F+ G+ V +A + E + + + +++D M + Sbjct: 1 MKENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKA-KSFSLILLDVMMPKM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +++ V L + I G G + +++KPF+ L + + + Sbjct: 60 DGYTMLCKLRES-SNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILK 118 Query: 120 MQKS 123 KS Sbjct: 119 RTKS 122 >gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis V9] Length = 239 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + + G+ A A + +K L P+ +++D + + Sbjct: 12 RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADK-LHPDLIIMDLMLPVMDG 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R + V L D ++ G GA+ ++ KPF+ L +R L + Sbjct: 71 IEATKRIEAQHP-IPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 128 >gi|326800911|ref|YP_004318730.1| Crp/Fnr family transcriptional regulator [Sphingobacterium sp. 21] gi|326551675|gb|ADZ80060.1| transcriptional regulator, Crp/Fnr family [Sphingobacterium sp. 21] Length = 347 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+++ + +R+ + G+ VF AT E K P+ ++ D M Sbjct: 1 MKNVLIIEDNDDIRESTVEILELAGYRVFSATEGRSGVELALKNK-PDIILCDIMMPNLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + + +L + + M GA+ +L KPF+ L A+ Sbjct: 60 GYGVLFLLGKHQETASIPFIFLTAKAERADMRKAMEMGADDYLTKPFDDVELLNAIETRL 119 Query: 119 QMQKSKDENQFL 130 + ++ D+ + L Sbjct: 120 RKKEITDKRKPL 131 >gi|299145146|ref|ZP_07038214.1| putative two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_23] gi|298515637|gb|EFI39518.1| putative two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_23] Length = 1317 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R + + + F +++ EA EA + E P+ ++ D M + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I ++ + + + + + E I GA+++++KPF+ + + L Q Sbjct: 1128 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187 Query: 122 KSKD 125 Sbjct: 1188 MLLK 1191 >gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V R G+ V A++ A E P+ +++D + G+ Sbjct: 11 ILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELART-RRPDVVILDIMLPGMNGLE 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + L + G GA+ +L+KPF E L ++ L + ++ Sbjct: 70 VCRCLHQTQATPAILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRRKQ 128 >gi|293373563|ref|ZP_06619914.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292631461|gb|EFF50088.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1317 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R + + + F +++ EA EA + E P+ ++ D M + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I ++ + + + + + E I GA+++++KPF+ + + L Q Sbjct: 1128 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187 Query: 122 KSKD 125 Sbjct: 1188 MLLK 1191 >gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 230 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+ D + + K+ + GF V A + EA + + P +++D M Sbjct: 3 KNILIADDNIEIIKILKPYVEKEGFTVVSALNGKEALDKFDV-CNPQIVLLDIMMPIIDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R ++ + + + + I G +GA+ +++KPF+ + ++ + + Sbjct: 62 MEVCKSIR---FKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|284036649|ref|YP_003386579.1| histidine kinase [Spirosoma linguale DSM 74] gi|283815942|gb|ADB37780.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1343 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 4/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + + + V + E P+ ++ D M Sbjct: 1088 MPYILLAEDDDDIASFILTTLSTE-WRVLRVNNGKAGLEAAIMNG-PDLIISDVLMPELN 1145 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P+ + + + L +V E + G AGA+ +L KPF LR +R Sbjct: 1146 GYELCRQLKSNPITSHIPILLLTAKVSAESRLEGLNAGADDYLAKPFQVNELRARIRNRL 1205 Query: 119 QMQKSKD 125 Q+ Sbjct: 1206 AQQQQAR 1212 >gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|298492712|ref|YP_003722889.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234630|gb|ADI65766.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 437 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD + KV G+ AT A E P+ +++D M G+ F Sbjct: 12 VLLVDDNPNNLKVLSEAIQRCGWKALMATDGESAIRQTEYAH-PDLILLDVMMPGLDGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ PL + V ++ D + G GA ++ KPF E + ++ ++ Sbjct: 71 TCRRLKANPLTYNTPVIFMTALCDPTDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKIS 130 Query: 122 KSKDENQF 129 + Sbjct: 131 NLTRTLEQ 138 >gi|160884891|ref|ZP_02065894.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483] gi|156109926|gb|EDO11671.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483] Length = 1317 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R + + + F +++ EA EA + E P+ ++ D M + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I ++ + + + + + E I GA+++++KPF+ + + L Q Sbjct: 1128 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187 Query: 122 KSKD 125 Sbjct: 1188 MLLK 1191 >gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 511 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + D G+ A EA E +E + +++D M + Sbjct: 5 KILIVDDEADIALILKLQLEDAGYETVRARDGVEALEAVAQEP-FDLIMLDIKMPRMDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V + + + + GA ++ KPF+ + + + + + Sbjct: 64 EVLSRL--KGDETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSTDDMLQKVERAIGIDR 121 Query: 123 SKDENQFLD 131 ++ EN L Sbjct: 122 TRKENARLS 130 >gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] Length = 1340 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 2/117 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + +G V A + + +++D M + Sbjct: 1215 RTVLVVDDDVRNVFAITSILDLYGLRVIHAADGRMGIDALRSNPGIDLVLMDVMMPEMDG 1274 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R MP D+ + + + + AGA ++ KP + E L +R Sbjct: 1275 YATTTAIRAMPQFADLPIIAVTAKAMPDDRQKCLDAGATDYVTKPVDIEELLACIRA 1331 >gi|323483016|ref|ZP_08088410.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum WAL-14163] gi|323691539|ref|ZP_08105808.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum WAL-14673] gi|323403645|gb|EGA95949.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum WAL-14163] gi|323504433|gb|EGB20226.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum WAL-14673] Length = 242 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 54/133 (40%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD V ++ + F A + +A ++ + +++D +M+G+ Sbjct: 17 MKKILIVDDDKRVVRMLEEYMKLYNFQTLCAGNGKDALALYDET--VDLIILDINMQGMD 74 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +V + L + AGA+ +++KPF+ L +R Sbjct: 75 GVEVCRRIRKQG---NVPIIMLSANAASFDKVEALGAGADDYIVKPFDPVELLARVRAHI 131 Query: 119 QMQKSKDENQFLD 131 + ++ ++ Sbjct: 132 GRTERFKASRTME 144 >gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 238 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + D G V + E+ + LV+D + GV Sbjct: 5 RRILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGW-DALVLDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + ++ L++ Sbjct: 124 DALAQSARLES 134 >gi|238921493|ref|YP_002935008.1| osmolarity response regulator [Edwardsiella ictaluri 93-146] gi|269140620|ref|YP_003297321.1| osmolarity response regulator [Edwardsiella tarda EIB202] gi|294638112|ref|ZP_06716369.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC 23685] gi|238871062|gb|ACR70773.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] gi|267986281|gb|ACY86110.1| osmolarity response regulator [Edwardsiella tarda EIB202] gi|291088744|gb|EFE21305.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC 23685] gi|304560407|gb|ADM43071.1| Two-component system response regulator OmpR [Edwardsiella tarda FL6-60] Length = 239 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|213961802|ref|ZP_03390068.1| putative DNA-binding response regulator/sensor histidine kinase [Capnocytophaga sputigena Capno] gi|213955591|gb|EEB66907.1| putative DNA-binding response regulator/sensor histidine kinase [Capnocytophaga sputigena Capno] Length = 903 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+V+ + +R+ R++ +D + + EA + E E +K LP+ ++ D M Sbjct: 655 TVLIVEDNEDMRQFIRYILSDS-YNLIEAENGEEGFEVAKKH-LPDVVISDVMMPKTDGF 712 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L E+ G +GA++++ KPFN + L+ +R+L + Sbjct: 713 DLCQLLKTNVATNHIPVILLTAYALDEQKQVGFESGADAYISKPFNVKLLKTRVRKLIEN 772 Query: 121 QKSKDE 126 +K E Sbjct: 773 RKKIRE 778 >gi|83647884|ref|YP_436319.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635927|gb|ABC31894.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 540 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD + K+ + G+ + A S +A K P+ +++D M G+ F Sbjct: 18 ILLVDDNPANLKILYETLDGRGYKLLVADSGEKALSIVRKSH-PDLILLDVMMPGMDGFE 76 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q P + +L D + + G AG ++ KPF + + + ++ Sbjct: 77 VCRTLKQDPATASSSIIFLSALDDTDSKVMGFDAGGVDYISKPFQVKEVIARVETHLKIH 136 Query: 122 KSKDENQ 128 + + + + Sbjct: 137 RLEQQLE 143 >gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 228 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + + G+ VF A + E +K P+ +++D M Sbjct: 1 MKKKDIRILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKK-KQPHLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R P + + +L + +AG AGA+ ++ KP + + Sbjct: 60 PEMDGIEACEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKV 119 Query: 115 RELPQMQKSKD 125 + L + K ++ Sbjct: 120 KALLRRLKDEE 130 >gi|220905533|ref|YP_002480845.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869832|gb|ACL50167.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 240 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++ LVD + + GF V A + +A + P+ +V+D + G Sbjct: 5 QTICLVDDDREILDLLSGYLKKHGFEVSCAENG-DALMDILRRDRPDLIVLDVMLPGQDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VR+ + + +L + + G GA+ ++ KPF L +R + + Sbjct: 64 FMVCREVRKQWR---IPIIFLSALGESTDRVVGLELGADDYMAKPFEPRELLARIRSVLR 120 Query: 120 MQK 122 + Sbjct: 121 RNE 123 >gi|189466459|ref|ZP_03015244.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM 17393] gi|189434723|gb|EDV03708.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM 17393] Length = 1316 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + + + + F V A + EA E K+ + + +V D M + Sbjct: 1066 TILLVDDNIEILTYLQKELSR-NFKVVTAQNGREALEVLGKKNV-SLVVSDVMMPEMDGM 1123 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ P + V L + + G +AGA+ +L+KPF TL + + Sbjct: 1124 ELCTYIKENPSLCHLPVILLTAKSMTIYVEEGFQAGADDYLVKPFKVSTLIVRINNILSG 1183 Query: 121 QKSKDE 126 +K E Sbjct: 1184 RKKLKE 1189 >gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759] gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759] Length = 224 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL + + + + + V + EA ++ + + +++D M + F Sbjct: 2 RLLLAEDEKALSSALQVILKHNNYSVDAVYNGQEAYDYIMAGVY-DGVILDVMMPKMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + G DV V L + + + I G GA+ +L KPF+ + L +R + + + Sbjct: 61 TVLSKIRSEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRRK 119 >gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 57/126 (45%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +++++ + + + G+ V A+ + E P+ +++D + G L Sbjct: 4 KIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTE-RPDLVLVDVMLPRLGGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ ++ + L + +AG + GA+ +L+KPF + L + L + Sbjct: 63 EVVREIRKTD--PELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRR 120 Query: 121 QKSKDE 126 ++S+ E Sbjct: 121 RRSRGE 126 >gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27] gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8] gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27] gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8] Length = 227 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ A +E+ PN +++D + + Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKF-REVSPNLVILDLMLPVMDGIE 67 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++V + L + E +AG AGA+ +L+KPF+ E L +R + Sbjct: 68 VAKRIR-KTSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRR 123 >gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + F D G+ V A++ EA E+C+K+ + +++D M + Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCDKD--IDIILLDIMMPNI 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++R + +L I G G + +++KPF+ + L+ ++ Sbjct: 59 DGFQVCQNIR---DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAH 115 Query: 118 PQMQKSKDENQF 129 + +K N Sbjct: 116 LRREKRVPLNNR 127 >gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + + + + G+ V A EA E + P+ +V+D + Sbjct: 4 KILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQS-FEPDLIVLDIMLPKVNGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + DV + L + D + G GA+ +L KPF+ L ++ + Sbjct: 63 DVCKTL---TPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRR 119 Query: 121 QKSKDENQFLDAI 133 + DA+ Sbjct: 120 ATKAPAAKKTDAV 132 >gi|255279926|ref|ZP_05344481.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255269699|gb|EET62904.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 236 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 9/126 (7%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 MD +L+++ +R+ R L + V EA + + E E + +++D M G Sbjct: 1 MDREQVLIIEDDADIREGVRILLESENYCVREAENGRKGLEMLEDTT--DLVILDIMMPG 58 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R++ ++V V +L + + G AG + +L KPF+ L ++ Sbjct: 59 MSGLRTCEEIRRV---SNVPVLFLTAKAQESDKLIGLMAGGDDYLPKPFSYAELLGRVKA 115 Query: 117 LPQMQK 122 L + + Sbjct: 116 LLRRYR 121 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G+ V + +A + ++ LP +++D + L Sbjct: 7 TILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWD-FIQQRLPQLILLDWMLPDQSGL 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +R ++ + L + E IAG GA+ ++ KPF+ L + L + Sbjct: 66 RLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] Length = 1499 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R R++ G+ + EA + +A EFC+++ +P+ +++D M + F Sbjct: 925 RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQ-MPDLVLMDAVMPVLDGF 983 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R +P V + D + + AGA ++ KP + LR + L Sbjct: 984 NACAQIRDLPDSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRKRVARLLDA 1043 Query: 121 QKSKDENQFLD 131 +++ + L Sbjct: 1044 SRAEKDIHQLA 1054 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + ++V + FG V ++ EA + + +++D M + Sbjct: 662 RRILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAI-ANKVYELVLMDCHMPQMDG 720 Query: 62 --FIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G V + + V AG N +L KP LR +R Sbjct: 721 YEATRRIRVREAGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWL 780 Score = 53.7 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58 LL+VD+S R+ FN +G + +A + + +++DE+M Sbjct: 519 RLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSAAVEGRAYDLVLVDENMLD 578 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + L V + + + I+ G +++ KP + +L + Sbjct: 579 LKGFNLAHKITEDSLIAPVKIILMGHQHHPASSISSLP-GVVNYVAKPVQQSSLYNVIVS 637 Query: 117 LPQMQKS 123 + ++ Sbjct: 638 AVKQNEA 644 >gi|120596940|ref|YP_961514.1| osmolarity response regulator [Shewanella sp. W3-18-1] gi|146294927|ref|YP_001185351.1| osmolarity response regulator [Shewanella putrefaciens CN-32] gi|120557033|gb|ABM22960.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145566617|gb|ABP77552.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319424531|gb|ADV52605.1| two component transcriptional regulator for porins, OmpR [Shewanella putrefaciens 200] Length = 241 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G+ + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 66 SICRRLRQQGSLIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 123 SK 124 + Sbjct: 126 LE 127 >gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D V + + G+ VF A + EA E K P+ +++D +M Sbjct: 1 MYKILVADDEKDVVSLLKDYLELKGYCVFTANNGAEAIEQASKS--PDLMLLDVNMPEAD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E VR + +L ++ E I G +G + ++LKPF+ + L + Sbjct: 59 GFEVCRKVR---DHVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHI 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 245 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A ++ P+ +++D + + Sbjct: 21 RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTA-RDFRPDAVILDVMLPDMDGL 79 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R +DV V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 80 AVLGRLRRELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 137 >gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703] gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 239 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] Length = 238 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ + GF V A + N +++D + GV F Sbjct: 12 KVLIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQN-FNMIILDLMLPGVDGF 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 71 EICRQVREQ---KNTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 127 Query: 121 QKS 123 +S Sbjct: 128 YQS 130 >gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] Length = 253 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ G+ + EA + +A + + + +++D M + Sbjct: 26 KILIVDDEKDIRKLVGIYLKRQGYQILEAENGKQAIDLVRENSDIDLIIMDIMMPEMSGT 85 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + V V +L + G + FL KPF + L ++ L + Sbjct: 86 ESCSAIRE---FSSVPVLFLTAKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALIRR 142 Query: 121 QKSKD 125 Sbjct: 143 YNIYK 147 >gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 222 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + + + G+ +A E E P+ +++D + G+ Sbjct: 5 SILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAE-APDLILLDLMLPGLDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R+ TD + + V+ + G GA+ ++ KPF+ + ++ + + + Sbjct: 64 SVC-REARRFTDAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVR 122 Query: 123 SKDENQF 129 + Sbjct: 123 GAPVEER 129 >gi|329954319|ref|ZP_08295412.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328527847|gb|EGF54837.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 1362 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL + + VR+ + + + V + + +A + E P+ ++ D M G+ Sbjct: 1108 TVLLAEDNEEVRQYVKESLEPYFY-VLDVGNGKDALD-LSLEKYPDLILSDIMMPGMDGL 1165 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V+Q + V + + + G GA+ +++KPF+ + L + + + Sbjct: 1166 ELCSRVKQDLQLGHIPVILMTAKSMVVHIKEGFSVGADDYIVKPFSMDVLICRINNILES 1225 Query: 121 QKSKDEN 127 ++ + Sbjct: 1226 REKLKKL 1232 >gi|320353214|ref|YP_004194553.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320121716|gb|ADW17262.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfobulbus propionicus DSM 2032] Length = 442 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 4/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD ++R + R G+ V EA A E E + +++D +M G+ Sbjct: 13 ILIVDDDEVIRMLMRQFLEAEGYAVVEAEDGRAALEKV-AEQSFDLVILDIAMPGIDGPS 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H+R V + D + + AGA ++ KP L+ +R + Sbjct: 72 VCEHIRSSMTDP-PPVLMITALDDEKSIERSYGAGAVDYIRKPLRWAVLKNRIRYILGSH 130 Query: 122 KSKDENQFLD 131 ++K E + L Sbjct: 131 RAKQELELLS 140 >gi|253578578|ref|ZP_04855850.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|257413775|ref|ZP_04744208.2| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] gi|251850896|gb|EES78854.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] gi|257202423|gb|EEV00708.1| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] Length = 235 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + F G++V+ A + EA K P+ +++D +M + Sbjct: 14 QSILIVDDERDIVSMLNQYFCKIGYVVYTAINGKEALNAITKH--PDIILLDINMPDMNG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + +L ++ I G G + +++KPF+ + L + + Sbjct: 72 FTICEKIRN---FVSCPIIFLTARIEDCDKIKGFAVGGDDYVVKPFSVDELEARVAAHLR 128 Query: 120 MQK 122 +K Sbjct: 129 REK 131 >gi|4732058|gb|AAD28578.1|AF121341_2 putative response regulator CelR2 [Rhizobium leguminosarum] Length = 457 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A A CE+ + +++D M G+ F Sbjct: 4 RILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERN-QVDLILLDIMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KTLSDELRIRA 133 Score = 69.8 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/127 (10%), Positives = 42/127 (33%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61 +LLVD ++ V + A E + ++++ + + Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEA-AESAFDLVIVNANFDDYDPLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + + + ++ G N ++++P + L + + Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADNMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275 Query: 122 KSKDENQ 128 + D + Sbjct: 276 RYNDRLR 282 >gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88] gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88] Length = 234 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ + + G+ V A++ E E ++E ++ D M + Sbjct: 1 MKERILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMI-DIMMPEM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + L +DV + + + + + G GA+ ++ KPF+ L+ + + Sbjct: 60 DGLTLC-KNIRLTSDVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLR 118 Query: 120 MQK 122 + Sbjct: 119 RYR 121 >gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family protein [Actinomyces oris K20] gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] Length = 249 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD +R + GF V A A + EK P+ +V+D + + F Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEK-TSPDLVVLDVMLPDMDGFT 75 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + +L D + G G + ++ KPF E + +R + + + Sbjct: 76 VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135 Query: 124 KD 125 + Sbjct: 136 IE 137 >gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 1274 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + +++ +HL D G+ V A + +A E + + +++D M + Sbjct: 1053 TNVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQSN-FDIVLMDMQMPVMDG 1111 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L AG + +L KP R+ L +++ Q Sbjct: 1112 YETTRVIRSDERYKSLPIIALTAHAMKGDNEKCLAAGCDDYLAKPVKRDILIKTIKKYIQ 1171 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+ + +++ + G+ V +A K P+ LV+D + E Sbjct: 796 VLVAEDEWTTKQLIANYLEKAGYTVVATDQGKQALTLA-KIYQPDVLVLDILLPDLSGWE 854 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +A +++ D+ V + + E GA F+ K + + L +++L + Sbjct: 855 VLAKIKKDQETQDIPVVVCSVLPEKE---RAFSLGAVDFIEKTVSEKVLVNRLQKLTHSR 911 Query: 122 KS 123 +S Sbjct: 912 RS 913 Score = 67.1 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 2/85 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+D + + + G+ EA + + +++D M G+ Sbjct: 916 THIVLIDDDKMALEFLNCIVGGAGYQTHSFMLAEEALNYIINGGQVHAIILDLLMPGMDG 975 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEV 84 F+ ++R + V + Sbjct: 976 FEFLDNLRADANYKSIPVLIYTGKD 1000 >gi|299145092|ref|ZP_07038160.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298515583|gb|EFI39464.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1330 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+V+ + R + D + VF+A + EA E ++ D M + Sbjct: 1081 TSLLIVEDNDDFRNFLINCLKDT-YQVFDAPNGKEALEIL-AHQSIQIVISDVMMPEMDG 1138 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + V L E ++G + GA+ ++ KPFN E L ++++ + Sbjct: 1139 MELCRKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKILK 1198 Query: 120 MQKSKDE 126 K+ E Sbjct: 1199 WTKNNHE 1205 >gi|269103903|ref|ZP_06156600.1| two-component system response regulator OmpR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163801|gb|EEZ42297.1| two-component system response regulator OmpR [Photobacterium damselae subsp. damselae CIP 102761] Length = 239 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLARENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124 Query: 123 SKD 125 + Sbjct: 125 IEA 127 >gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 224 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ GF +EA +A E+ + +++D M + Sbjct: 1 MPKILIVDDDPHIRELVAVFLEREGFQTYEAIDGIDALGKI-AEVKIDMVILDIMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R D+ + L + + + + G + G + +L+KPF+ L ++ L Sbjct: 60 GWELCYELR---RYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALL 116 Query: 119 QMQK 122 + + Sbjct: 117 KRYQ 120 >gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] Length = 233 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M+ +L+VD +R V L GF V A + ++ + + LV+D +M G Sbjct: 1 MNHILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHV-DLLVLDVNMPGPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + + +L +AG AG + +L+KPF+ L + Sbjct: 60 GLEVCRQLRERAAV--LPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQL 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905] gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905] Length = 230 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D +R + G+ V +A +A + E + + +++D M + Sbjct: 5 TVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLDAIDKLENNEV-HLIILDIMMPNMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPF+ L ++ + Sbjct: 64 TATFKIRAE-RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRR 120 >gi|222056633|ref|YP_002538995.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221565922|gb|ACM21894.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 225 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+++ + ++ GF E E LP+ +++D + G Sbjct: 1 MKTILVIEDERDLAELIAFNLEKEGFRCLREADGTSGLETARSE-LPDLILLDLMLPGLM 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +++ + + L + + G GA+ +++KPF+ L +R + Sbjct: 60 GTEICKILKKNEKTATIPIMMLTARGEEIDRVVGFEVGADDYIVKPFSIRELLLRIRAVL 119 >gi|304322337|ref|YP_003855980.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] gi|303301239|gb|ADM10838.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] Length = 225 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 1/132 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + GF V A + + E P+ +V+D + G+ Sbjct: 1 MTRILVIEDDEETASFIANGLKQEGFAVDTAKTGTDGLFQA-TESPPDLVVVDRMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G + V +L E +AG AG + +L+KPF+ LR + L + Sbjct: 60 GVSVIKALRAAGVKIPVLFLTAMGAVEDRVAGLEAGGDDYLVKPFSFMELRARVTTLLRR 119 Query: 121 QKSKDENQFLDA 132 KDE L+A Sbjct: 120 PPLKDEITRLEA 131 >gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] Length = 248 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ +VD + ++ + + GF A E + P+ +++D + G+ Sbjct: 9 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L + D ++AG AGA+ ++ KPF L +R ++ Sbjct: 68 GTEVA-RRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRI 126 Query: 121 QKSKDEN 127 K E+ Sbjct: 127 AKPAAED 133 >gi|329961774|ref|ZP_08299805.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531515|gb|EGF58355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1327 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V ++ EA KE P ++ D M + Sbjct: 1067 QKILIVEDNDELRAYLLQCLSST-YNVQVCSNGKEAL-VLVKEFWPELILSDIMMPEMGG 1124 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + ++ G + GA+ +++KPF+ L+ ++ L Sbjct: 1125 DELCSAIKNDMETSHIPVLLLTALADEKHILEGLQIGADEYIVKPFSLNILKASIANLLA 1184 Query: 120 MQKSKD 125 + Sbjct: 1185 NRALLR 1190 >gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 46P47B1] gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 103P14B1] gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 12P80B1] gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC8] gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC1] gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC7] gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis CO72] gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis O35E] gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 101P30B1] Length = 230 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--- 59 +L+V+ + ++ + F V +A A E P+ +++D M Sbjct: 4 KILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEK-PDLILLDWMMPHGESG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++F +++ P D+ + L + + + + G AG + ++ KPF+ L ++ + + Sbjct: 63 IDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLR 122 Query: 120 MQKSKDENQFLDA 132 + + A Sbjct: 123 RTGIDMGKELMQA 135 >gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208] Length = 222 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + K+ H GF V EA EA E + + VID M + F Sbjct: 1 ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEA-EKIVETEQVHLAVIDVMMPNMDGFE 59 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + D+ V L + G G + ++ KPF E L F +R L + Sbjct: 60 LCQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSNQ 119 Query: 124 KDE 126 E Sbjct: 120 ASE 122 >gi|254415908|ref|ZP_05029665.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177335|gb|EDX72342.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 366 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 S+L+VD V G+ +F A+S EA + + P+ +++D M Sbjct: 8 TSILIVDDDPNAFDVIEAHLYREGYDLFYASSGEEALNLLDS-IEPDVILLDVMMPKLNG 66 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ V V + E + AGA+ F+ KP + LR +R + + Sbjct: 67 IEVCRTIKSDSHWKHVPVIIVTALNSKEDLARSLNAGADDFITKPVSGIELRARVRSMLR 126 Query: 120 MQKSKDENQ 128 +++ D + Sbjct: 127 IKQQYDALE 135 >gi|254415898|ref|ZP_05029655.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177325|gb|EDX72332.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 364 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 9/137 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+++L+++ +R+ L + F V A + + +++ P+ ++ D M Sbjct: 1 MNTILIIEDEEGIRENIYELLSAEDFEVLLAENGKTGIQLAQQQ-RPDLIICDIMMPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-- 116 + +RQ + +L + + G +GA+ +L KPF RE L A+ Sbjct: 60 GYGVLTQLRQNLSTEAIPFIFLTAKSAKADLRQGMESGADDYLSKPFTREALLRAIAARF 119 Query: 117 ----LPQMQKSKDENQF 129 + + Q K ++ Sbjct: 120 EKQGVLERQSQKKLDEL 136 >gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V + + EA + E N +++D M + F Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSE-QFNLILMDIMMPKLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ T++ + +L + + I G +G + ++ KPF+ L + + + Sbjct: 63 -EAIKRIRKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119 >gi|91214972|ref|ZP_01251944.1| response regulator DrrA [Psychroflexus torquis ATCC 700755] gi|91186577|gb|EAS72948.1| response regulator DrrA [Psychroflexus torquis ATCC 700755] Length = 228 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +L+VD + ++ + N G+ V A +A + K+ P+ +++D M Sbjct: 1 MKKSDITILVVDDDPDILEILSYNLNAEGYKVITAEDGVQAVKK-AKKKKPHLVILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R+ + + +L + +AG AGA+ ++ KP + L + Sbjct: 60 PEMDGIEACEQIRETKGLENTVITFLTARGEDYSQVAGFDAGADDYITKPVKPKVLMSKV 119 Query: 115 RELPQMQKS 123 + L + KS Sbjct: 120 KALLRRFKS 128 >gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8] gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8] Length = 237 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD V +V H + G+ V A EA E + +V+D + G E Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETA--SGKIDLIVLDIMLPGVDGYE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R ++ + +L + + E I G G + +L KP + + L ++ + + Sbjct: 70 VCRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRS 129 Query: 122 KSKD 125 ++ Sbjct: 130 GVEE 133 >gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1361 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L VD V G V +A + +A E ++ + + +++D M + Sbjct: 1241 TILAVDDDPRNLFVLTASLEQNGAEVHKALNGLKALEILKQHSV-DLILMDIMMPEMNGY 1299 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R P ++ + L + E AGAN +L KP + E L ++ + Sbjct: 1300 EAIHEIRANPSYCEIPIIALTAKALKEDKQKCLDAGANDYLSKPVDYEILINMVQTWIKR 1359 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 8/120 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L++D + + ++ G A E K P +++D + + Sbjct: 977 KILVIDDDLLFVENISYINQAQGLDTLSAHDGREGL-RVAKSHHPVGIILDLGLPDMRGE 1035 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA-RAGANSFLLKPFNRETLRFAMRELPQ 119 E + +++ P + VY + + GA FL KP N + A R L Q Sbjct: 1036 EVLEQLKRSPELRHIPVYIISAK----DKQRALVDQGAIGFLQKPVNDAQIATAQRTLLQ 1091 Score = 38.6 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 5/87 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 +LL+++ + + + + G E + + D +EG+ Sbjct: 1099 TLLILEGPALQQDLIAEKAMNAGMQQLVVQKPEEVLAK-TAGHPFDLFLTDYDIEGMTCV 1157 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFE 87 E VRQ ++ + E Sbjct: 1158 ELCQQVRQHQ--PELPIIIYSSRSLNE 1182 >gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 241 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R + GF V A A + + P+ +V+D + + F Sbjct: 16 KLLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQA-VRPDLIVLDVMLPDMDGF 74 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V +L D I G G + ++ KPF E + +R + + Sbjct: 75 TVTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 132 >gi|301058488|ref|ZP_07199501.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300447410|gb|EFK11162.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 673 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 58/130 (44%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + R+ R + + FG A + +A + P+ +++D M G+ Sbjct: 2 RILIVDDELVSREKLRKIMSAFG-QCILAENGKDAMRIASSQNPPDLILMDILMPGMDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +D+ + ++ + + G GA ++ KPFN ++ +R ++ Sbjct: 61 EVCKKLKAKRKTSDIPLIFISGKSEEGDESKGFELGAVDYIRKPFNPSIVKARVRTHLEL 120 Query: 121 QKSKDENQFL 130 +K +D + L Sbjct: 121 KKYRDRLEEL 130 Score = 78.3 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 ++L+VD R++ + G+ +S EA KE + +++D M + Sbjct: 556 TVLVVDDEERQREIATKMLAKLGYNAEAVSSGEEA-TTYVKERSVDLILLDMVMPKGING 614 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ G V ++ GA ++ KP+ E L A+++ + Sbjct: 615 RETYEEIIKIRHGQKA-VIA-SGYAKTREVQIAQELGAGEYIKKPYTLEKLGIALKKELE 672 Query: 120 M 120 Sbjct: 673 K 673 >gi|145297354|ref|YP_001140195.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850126|gb|ABO88447.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 426 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + K+ G+ V A S A + ++ + ++ D M G+ Sbjct: 1 MSRILLVDDDVSLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA-DLVLSDLRMAGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V + I R+G SFL KP +++ L + + Sbjct: 60 GLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSL 119 Query: 121 QKSKDENQ 128 + K + + Sbjct: 120 TRPKQQQE 127 >gi|121593459|ref|YP_985355.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax sp. JS42] gi|120605539|gb|ABM41279.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax sp. JS42] Length = 377 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + + L + V A S +A + + P+ L++D M G Sbjct: 21 TVLVVDDTPDNLTLMAGLLQGL-YRVKVAASGEKALVIAQSDAPPDLLLLDIMMPGIDGY 79 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + V +L D + G GA ++ KP + L + + Sbjct: 80 EVCRRLKANEATRHIPVIFLTARSDPDDEREGLALGAVDYITKPISPSILLARVATHLAL 139 Query: 121 QKSKD 125 + + D Sbjct: 140 KATAD 144 >gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 226 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD ++ + G+ A EA + ++ + + L++D M + Sbjct: 1 MKTILLVDDEERMKNLLALFLEPHGYKCLRAKDGYEAIQLVKRTHV-DMLLLDIMMPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L D MI G GA+ ++ KPF+ L + L + Sbjct: 60 GLETC-RKIREFSNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRR 118 Query: 121 QKSK 124 Q+ + Sbjct: 119 QQIQ 122 >gi|314950224|ref|ZP_07853508.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|313643451|gb|EFS08031.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 239 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 18 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D V + + DFE G + GA+ ++ KP + + + L + Sbjct: 77 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 136 Query: 121 QK 122 K Sbjct: 137 SK 138 >gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 9/135 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A EA E + PN +++D + Sbjct: 3 QKILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQN-PNLILLDVMLPKQDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ + L + + + G GA+ ++ KPF L ++ + Sbjct: 62 FQVCKKLREKLA---CPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLR 118 Query: 120 MQKSK---DENQFLD 131 +E + L Sbjct: 119 RLTLSNPVEEQKLLK 133 >gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF A E+ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGA-DIVLLDVMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRAKSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 227 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + L GF + +A ++E + +++D + G+ Sbjct: 1 MSKILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGA-DLVLLDVMLPGMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R++ V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GMEVCRKLREVSS---VPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QMQKSK 124 + + ++ Sbjct: 117 RRRSAE 122 >gi|209548893|ref|YP_002280810.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534649|gb|ACI54584.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 457 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A A CE+ + +++D M G+ F Sbjct: 4 RILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERN-QVDLILLDIMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKANRKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KTLSDELRIRA 133 Score = 71.4 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 48/132 (36%), Gaps = 6/132 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61 +LLVD ++ V + A E + ++++ + + Sbjct: 158 ILLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEA-AESAFDLVIVNANFDDYDPLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + + + E ++ G N ++++P + L L Q++ Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVAR--SLTQIR 273 Query: 122 KSKDENQFLDAI 133 + + ++ ++ Sbjct: 274 RKRCNDRLRASV 285 >gi|116071491|ref|ZP_01468759.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|116065114|gb|EAU70872.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 259 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 8/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R + GF V A + + + +P+ +++D + L Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYIPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + L + ++G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123 Query: 122 -----KSKDENQFLD 131 + ++N+ L Sbjct: 124 DRAPLGASNQNEILS 138 >gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 224 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ A +E+ PN +++D + + Sbjct: 6 ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKF-REVNPNLVILDLMLPVMDGIE 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L + E + G AGA+ +L+KPF+ E L +R + Sbjct: 65 VA-RRIRKTSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRR 120 >gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 2/133 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ V +A + EA + + +V+D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I V+++ + + L + I G GA+ ++ KPFN + ++ L + Sbjct: 60 G-IQVVKEVRKELQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRR 118 Query: 121 QKSKDENQFLDAI 133 Q L+ + Sbjct: 119 SNYATNLQELNKL 131 >gi|15926996|ref|NP_374529.1| truncated (putative response regulator ArlR [S [Staphylococcus aureus subsp. aureus N315] gi|13701213|dbj|BAB42508.1| truncated (putative response regulator ArlR [S [Staphylococcus aureus subsp. aureus N315] Length = 133 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + + V + + + +++D + Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYY-DLIILDLMLPSIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + D +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPQKD 123 >gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933] gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai] gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. MG1655] gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073] gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T] gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301] gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046] gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227] gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197] gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. W3110] gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89] gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536] gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401] gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1] gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638] gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A] gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS] gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4113] gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4401] gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4501] gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4486] gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4196] gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4076] gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC869] gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC508] gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739] gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. DH10B] gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5] gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94] gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638] gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99] gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A] gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11] gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22] gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019] gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171] gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012] gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1] gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str. EC4024] gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str. EC4024] gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342] gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4206] gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4045] gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4042] gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4115] gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11] gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str. E2348/69] gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. TW14588] gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469] gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1] gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88] gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a] gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989] gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39] gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026] gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972] gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA] gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli BW2952] gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str. TW14359] gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9] gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B] gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96] gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O103:H2 str. 12009] gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O26:H11 str. 11368] gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O111:H- str. 11128] gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str. FRIK966] gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168] gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220] gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Klebsiella sp. 1_1_55] gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str. CB9615] gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103] gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430] gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412] gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354] gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302] gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661] gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1] gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7] gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1] gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1] gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1] gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1] gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1] gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1] gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1] gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1] gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1] gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1] gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1] gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1] gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1] gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1] gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1] gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101] gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736] gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617] gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7] gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75] gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70] gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3] gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736] gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605] gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718] gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206] gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143] gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271] gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591] gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299] gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9] gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis [Escherichia coli O157:H7 str. EDL933] gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073] gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli] gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi] gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12 substr. MG1655] gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. MG1655] gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri] gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai] gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhi] gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T] gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301] gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046] gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF [Shigella dysenteriae Sd197] gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227] gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K12 substr. W3110] gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89] gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536] gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401] gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1] gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS] gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A] gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. DH10B] gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5] gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC 3083-94] gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4196] gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4113] gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis Et1/99] gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638] gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4076] gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4401] gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4486] gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4501] gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC869] gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC508] gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A] gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11] gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22] gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019] gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171] gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012] gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1] gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342] gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4206] gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4045] gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4042] gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4115] gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli] gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli] gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli] gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli] gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli] gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11] gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O127:H6 str. E2348/69] gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. TW14588] gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli 55989] gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia fergusonii ATCC 35469] gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli IAI1] gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli S88] gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli IAI39] gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli ED1a] gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli UMN026] gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82] gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96] gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA] gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972] gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli BW2952] gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli O157:H7 str. TW14359] gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O26:H11 str. 11368] gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O103:H2 str. 12009] gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O111:H- str. 11128] gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15] gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017] gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168] gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM 12163] gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042] gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Klebsiella sp. 1_1_55] gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str. CB9615] gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC 29220] gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103] gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412] gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354] gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430] gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034] gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302] gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661] gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1] gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1] gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1] gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1] gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1] gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1] gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1] gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1] gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1] gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1] gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1] gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1] gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1] gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7] gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1] gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1] gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1] gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101] gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU 83972] gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146] gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7] gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617] gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70] gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617] gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC BAA-2158] gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75] gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG 857C] gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str. 2457T] gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli W] gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1] gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1] gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3] gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1] gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3] gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431] gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae CDC 74-1112] gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC 796-83] gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli O157:H7 str. EC1212] gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli WV_060327] gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli EC4100B] gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101] gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str. 493-89] gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H 2687] gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str. LSU-61] gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14] gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010] gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G] gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68] gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180] gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357] gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1] gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2] gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3] gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227] gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli O157:H7 str. 1044] gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli O157:H7 str. 1125] gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v] gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355] gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3] gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli AA86] gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736] gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605] gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718] gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206] gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143] gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271] gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591] gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299] gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82] gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae 155-74] gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74] gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9] gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88] gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671] gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70] gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71] gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71] gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6] gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272] gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218] gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304] gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227] Length = 239 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 224 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+VD V + + GF V A S EA + ++ P+ +++D M G+ Sbjct: 1 MDRILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQP-PDLVILDIMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108 R ++ V +L + G AGA+ +++KPF E Sbjct: 60 GMEVLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFE 107 >gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A EA +++D M + Sbjct: 1 MK-ILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTNPDIALMILDVMMPNMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + + L + I G GA+ ++ KPFN + +R L + Sbjct: 60 GL-EVVKVVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 ++ +++ Sbjct: 119 AENSVQDK 126 >gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] Length = 228 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+++ +R+ + + V A E E K + +++D M Sbjct: 1 MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKF-KNNFYDIILLDLMMPKFS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +++ + L + + GA+ +L KPF E L +R Sbjct: 60 GEEVCKIIRK---TSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVAL 116 Query: 119 QMQKS 123 + + + Sbjct: 117 RNKSN 121 >gi|298530375|ref|ZP_07017777.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298509749|gb|EFI33653.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 301 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 6/136 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD I +V L D + + A S +A + +E P+ +++D +M G+ F Sbjct: 7 RILIVDDEKINLRVLADLLKDK-YTIMLARSGEQALKLAHQEPRPDLILLDIAMPGMSGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++ + V ++ E+ G + GA ++ KP + ++ +R M Sbjct: 66 EVIKKLKHDDATNHIPVIFITALDSREQEEKGLKLGAVDYITKPISPPIVKIRVRNYLDM 125 Query: 121 Q---KSKDENQFLDAI 133 Q K ++ LD + Sbjct: 126 QHKYKLLEQKANLDGL 141 >gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ V +E P+ +++D + G+ Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTA-RESNPDLILLDWMLPGISGLD 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G+ V + L + D +AG AGA+ +++KPFN E L +R + Sbjct: 65 ICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHE 124 Query: 124 KDEN--QFLD 131 +D + QFLD Sbjct: 125 EDPDLLQFLD 134 >gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108] gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108] Length = 238 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDY-DLILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 65 EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121 >gi|197119640|ref|YP_002140067.1| response receiver sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197089000|gb|ACH40271.1| response receiver sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 383 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 6/136 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +++VD + ++ + + +F ATS +A E + P+ +++D M G Sbjct: 1 MKRQTVMIVDDTPANIEILSETLGEE-YELFFATSGADALELIRADK-PDLILLDIMMPG 58 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + ++ P D+ + ++ + E+ I G GA +L KP + +R ++ Sbjct: 59 MDGYELCSILKGDPATRDIPIIFVTAMIGEEEEIKGLELGAIDYLTKPISPHIVRARVKN 118 Query: 117 LPQMQKSKDENQFLDA 132 ++++ +D + L + Sbjct: 119 HLELKRYRDLLETLAS 134 >gi|153004813|ref|YP_001379138.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028386|gb|ABS26154.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 470 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD +R+V + G+ V A +A K + + +V D M G Sbjct: 1 MPHVLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHKTPV-HVVVTDLVMPKVG 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + R DV V + + + +AGA ++ KPF ++ L+ + + Sbjct: 60 GMELLR--RVGADFPDVPVIMITAHGSVDSAVGALKAGAFDYITKPFEQDELKKVIAKAA 117 Query: 119 QMQKSKDEN 127 + + +N Sbjct: 118 RAHDLERQN 126 >gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL + + G+ + A + +A + +E P+ +++D M G+ Sbjct: 835 ILLAEDNQANIDTISSYLESRGYEMVLAENGQQALD-FAREKCPDLIIMDIQMPGMNGLE 893 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I +R D+ + L AGAN +L KP + L +++L + Sbjct: 894 AIRQIRNEQKFIDIPIIALTALAMPSDRTTCLAAGANEYLTKPIKLKQLVLTIQQLLKNH 953 Query: 122 K 122 + Sbjct: 954 Q 954 Score = 56.0 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFND---FGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 ++LL+D R + + + E + EA +C E P +++D + Sbjct: 8 TVLLIDKCSEERANMTRHLQQDSLYNYQIIEFSIAKEALNWCL-EKTPEIILLDFASVNE 66 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRE 116 F+ +R + V L+ D + + ++GA +L+K E L+ +R Sbjct: 67 NASIFLEKLRSRLSNSQFTVILLIKPGDEDLAVRAMKSGAQDYLIKNQITPEILQRVIRH 126 Query: 117 LPQMQKSKDENQFLDA 132 + + A Sbjct: 127 GMEKMYLMQQLAQTKA 142 >gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 270 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R GF V A + EA + P+ L++D + F Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAAD-QPDLLILDVMLPDADGF 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G +V V YL I G G + ++ KPF E L +R + + + Sbjct: 81 EVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTR 140 >gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 226 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L+VD ++ K + +V A EA + + +++D + + Sbjct: 3 KKALVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEY-DIILLDVMLPIMTG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ ++V + L + D I G GA+ ++ KPFN ++ ++ + + Sbjct: 62 FEVCQQIRE---FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 227 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ A +E PN +V+D + + Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRF-RETNPNLVVLDLMLPVMDGIE 67 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L + E + G AGA+ +L+KPF+ E L +R + Sbjct: 68 VA-RRIRKTSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123 >gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1153 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 5/135 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R L + F V A + +A + LP ++ D M + Sbjct: 621 TKILVVDDNADMRAYLTRLLAPY-FTVSTAVNGADAIRQLATD-LPQLILSDIMMPVMDG 678 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + V+Q P+ + + +L E I G AGA+ +L+KPF+ L +R Sbjct: 679 KELLRRVKQNPVTAPIPLIFLSARAGQEARIDGLEAGADDYLVKPFSSLELLTKIRAQIN 738 Query: 120 MQKSKDENQ-FLDAI 133 + +++ + + L ++ Sbjct: 739 LNQTRRQGETRLRSL 753 >gi|255035713|ref|YP_003086334.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948469|gb|ACT93169.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1278 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++L+++ + +R R LF + + + EA + E +E +P+ ++ D M Sbjct: 1027 NTILIIEDNDQLRVFIRELFEET-YNILEAGNGLRGVELA-QEKIPDIILSDVMMPEISG 1084 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +++ + + V L E++I G AGA+ +L+KPF+ L + L + Sbjct: 1085 LEVCNRLKKSDTTSHIPVVLLTARTQSEQVIEGLTAGADDYLVKPFDPRILEIKINNLLR 1144 Query: 120 MQKSKD 125 +++ Sbjct: 1145 VREQMK 1150 >gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 225 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 8/131 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L++D + +V + + G+ V +ATS EA E + E P+ L++D + + Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEK-QSEFNPDLLILDLMLPDI 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V + L + + ++ G G++ ++ KPF+ + L + + Sbjct: 60 SGENVCERIRRESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116 Query: 118 PQM-QKSKDEN 127 + + ++ EN Sbjct: 117 LKRVKGNQREN 127 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB [Herminiimonas arsenicoxydans] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G+ V + EA + ++ LP +++D + L Sbjct: 7 TILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWD-FIQQRLPQLILLDWMLPDQSGL 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +R ++ + L + E IAG GA+ ++ KPF+ L + L + Sbjct: 66 RLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|114569317|ref|YP_755997.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339779|gb|ABI65059.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 233 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R + + + GF V A + +A L + LV+D M G+ F Sbjct: 11 ILVVDDDDRIRNLLKRFLQERGFRVSTAPNAGKALSTL-NSLAFDLLVLDVMMPGMNGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+ + L D E I G GA+ +L KPF E L + + + Sbjct: 70 LTEAVRKRGE---TPILLLTARGDAEDRIKGLSLGADDYLPKPFEPEELVLRINAILRRA 126 Query: 122 K 122 + Sbjct: 127 R 127 >gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2] Length = 227 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ +L G+ V A +A ++ + +++D + G Sbjct: 1 MTRILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGA-DLVLLDLMLPGVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + + V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRELR---VKSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596] gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596] Length = 229 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD++LLVD + V R GF V A + A + + E + + LV+D M + Sbjct: 1 MDTILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHV-DLLVVDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + L D YL ++ + G GA+ ++ KPF+ L ++ + + Sbjct: 60 GHTLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRR 119 Query: 121 QKSKDENQFLD 131 K E + L Sbjct: 120 SKRSSEPETLK 130 >gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + L GF A A ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGA-DIVLLDLMLPGMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GNDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVL 116 Query: 119 QMQKSKD 125 + + D Sbjct: 117 RRGQEAD 123 >gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] Length = 237 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + KV + GF V A A +E P +V+D + G L Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSV-REFEPALIVLDLMLPGFDGL 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D +V L D + G AGA+ +++KPF L ++ L + Sbjct: 72 EVCRRIR---TFSDAYVLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128 Query: 121 QKSKD 125 ++ Sbjct: 129 PRASS 133 >gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTQQTI 132 >gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2] gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2] Length = 244 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 11 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 70 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 129 Query: 123 SK 124 ++ Sbjct: 130 NE 131 >gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes] gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes] gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes] gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes] gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes] gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes] gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes] Length = 233 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + + + GF V A E E P+ +V+D + + Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 + +V + L + + I G GA+ ++ KPF+ + ++ + + + K Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 125 DE 126 E Sbjct: 121 AE 122 >gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 220 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ ++ + R GF V A + + + +++D + L Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPY-DLVLLDLGLPKRDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R G + V + + G AGA+ +L+KPF+ + L MR L + Sbjct: 61 DVLRTLRTR--GHQLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 Query: 121 QKSKDE 126 Q + E Sbjct: 119 QSGRSE 124 >gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 238 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + K+ +GF V A++ E E E + +++D + + F Sbjct: 6 RLLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAE-AFDLVLVDLMLPELDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + ++ + + + E + G GA+ ++ KPF+ E L + + + Sbjct: 65 T-LLRTIRKTHEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYR 123 Query: 123 SKD 125 Sbjct: 124 RYQ 126 >gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583] Length = 299 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L+VD + + + F+V++ EA F EKE L + ++D M Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEEL-DLALLDIMMPKI 127 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 LE +R+ + L + I G GA+ ++ KPF + ++ Sbjct: 128 SGLELCKKIRERYNY---PIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQ 184 Query: 118 PQMQK 122 + K Sbjct: 185 LRRYK 189 >gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 279 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A +E P+ +V+D ++ + Sbjct: 54 RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEA-REFQPDAVVLDVALPDMDGL 112 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 113 TLLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 172 Query: 123 SKDENQ 128 + + Sbjct: 173 AASAAR 178 >gi|148240222|ref|YP_001225609.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147848761|emb|CAK24312.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 246 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + + G+ V A+ + P+ +V+D ++ + Sbjct: 10 RILLVDDEARLTDLLKMELEVEGYDVVVASDGASGLFHARETPGPDLIVLDWNLPDFSGI 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G + L D + AG + +L+KPF+ E L +R + + Sbjct: 70 DICQRIRT--SGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRR 127 >gi|295085864|emb|CBK67387.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1317 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R + + + F +++ EA EA + E P+ ++ D M + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I ++ + + + + + E I GA+++++KPF+ + + L Q Sbjct: 1128 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187 Query: 122 KSKD 125 Sbjct: 1188 MLLK 1191 >gi|284050274|ref|ZP_06380484.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira platensis str. Paraca] gi|291568236|dbj|BAI90508.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 579 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +VR+ L F V EAT + E+E P+ ++ D M Sbjct: 1 MKKILIIEDERLVRENLVELLTFENFQVLEATDGLRGVKLAEQEH-PDLILCDVMMPILD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +A +RQ P + ++ D GA+ ++ KP + L ++ Sbjct: 60 GYGVLAQLRQNPKTAIIPFIFMTALADRMNTRKAMELGADDYITKPCSAAELMRSITVRL 119 Query: 119 QMQKSKDE 126 + + + Sbjct: 120 EKHSNMQQ 127 >gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 232 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 4 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DLALLDVMLPGID 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L V E + G GA+ ++ KPF+ L ++ L + Sbjct: 63 GFQVCKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122 Query: 121 QKSKDE 126 + DE Sbjct: 123 IEVHDE 128 >gi|29345776|ref|NP_809279.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337669|gb|AAO75473.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1420 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + +R R + + + V EA + EA ++++ D M + Sbjct: 1168 SILVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNP-IDFIISDLMMPVMDGI 1225 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V++ + + L + E + R G + +LLKPF+ L ++ + + Sbjct: 1226 ELSRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLARIQNILEN 1285 Query: 121 QKSKDENQFLD 131 +K LD Sbjct: 1286 RKRYQRKFTLD 1296 >gi|17229799|ref|NP_486347.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131399|dbj|BAB74006.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 470 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + ++ + GF V +A + A C+ LLP+ +++D SM + Sbjct: 12 NILVVDDTPDNLRLLSAMLTARGFEVRKALNGKMALTACQM-LLPDVILLDVSMPDMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +D+ V ++ D + G ++ KPF+ + + + Sbjct: 71 QVCQQLKADEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQINL 130 Query: 121 QKSKDENQ 128 + + + + Sbjct: 131 RLLQLQLK 138 >gi|302539959|ref|ZP_07292301.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457577|gb|EFL20670.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1149 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LL+ D + VR L V A A + + + ++ D M Sbjct: 642 RLLVADDNADVRSYLGDLLGRE-HDVLLAADGRAALDTALAHPV-DLVLTDVMMPRLDGF 699 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P T + + L E + G AGA+ +L KPF+ L + ++ Sbjct: 700 GLVRALRADPRTTRLPIIMLTARAGEESTVRGLGAGADDYLAKPFSARQLLARVSANLEL 759 Query: 121 QKSKDE 126 + ++ Sbjct: 760 SRLRER 765 >gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 230 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA + E + ++++D M + Sbjct: 1 MMDILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFK-FVLLDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R ++V + + +I G + G++ ++ KPF+ L + + + Sbjct: 60 GWETCNRIRS-FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRR 118 Query: 121 QKSKDENQ 128 ++ + Sbjct: 119 SNQHEQLR 126 >gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|197122377|ref|YP_002134328.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917159|ref|YP_002492463.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172226|gb|ACG73199.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] gi|219955013|gb|ACL65397.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 473 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD +R+V + G+ V A +A + + + +V D M G Sbjct: 1 MAHVLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHRTPV-HVVVTDLVMPRVG 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + R DV V + + +A +AGA ++ KPF +E L+ + + Sbjct: 60 GMELLR--RVSQDFPDVPVILITAHGSVDSAVAALKAGAFDYITKPFEQEELKKVIAKAA 117 Query: 119 QMQKSKDEN 127 + + +N Sbjct: 118 RAHDLERQN 126 >gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568] gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC 43380] gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii ATCC 33641] gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC 29909] gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC 43969] gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582] gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC 43380] gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC 43969] gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii ATCC 33641] gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC 29909] gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582] gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia enterocolitica subsp. palearctica Y11] gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica W22703] Length = 239 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|332530643|ref|ZP_08406576.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332039926|gb|EGI76319.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 227 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ + ++ GF A A+ + +LP+ +++D + G L Sbjct: 2 LIVEDEPAIAELIAVNLRHNGFQPTLALDGESAQREIDA-MLPDLVLLDWMLPGASGLTL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R P V + L D +AG AGA+ ++ KPF+ + + +R + + + Sbjct: 61 ARRWRGDPRTKAVPIIMLTARGDEADRVAGLDAGADDYMAKPFSTKEMLARIRAVLRRRA 120 Query: 123 SKDENQFLDA 132 + L+A Sbjct: 121 PEQAAVTLEA 130 >gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 224 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 8 DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIAH 65 + +R++ + + + + A++ +A E +KE LP+ +++D + G + Sbjct: 2 EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKE-LPDLILLDIMLPGKDGYDVCKE 60 Query: 66 VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125 +R ++ + + + + I G GA+ ++ KPF+ L ++ + + Sbjct: 61 IRNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRRTTLLQ 120 Query: 126 ENQFL 130 N + Sbjct: 121 NNSRM 125 >gi|297528706|ref|YP_003669981.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297251958|gb|ADI25404.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 232 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + + V S EA + + +V+D MEG+ Sbjct: 4 KKILLVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMM--NNDFDLIVLDIMMEGIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ DV + ++ + E + G + ++ KPF+ + L+ + + Sbjct: 62 MELCRLIRER---VDVPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDCHLR 118 Query: 120 MQKSKDENQF 129 ++ N+ Sbjct: 119 REERIRSNER 128 >gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 4 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 62 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 63 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 119 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 120 LRRSEEPAPEQL 131 >gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08] gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07] gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08] gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07] Length = 234 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 11/133 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + +R++ L G+ V AT+ EA + + +++D M Sbjct: 7 KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLADST--IDLIILDVVMPVKTG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + +R+ T + +L + + G AG + +L KPF+ L ++ L + Sbjct: 65 FVACSEIREK---TTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLR 121 Query: 120 M----QKSKDENQ 128 Q + E + Sbjct: 122 RYYIYQGKEKEKE 134 >gi|218128661|ref|ZP_03457465.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697] gi|217989116|gb|EEC55431.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697] Length = 1348 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + +R+ + F + EA + +A + + + + + ++ D M + Sbjct: 1100 KILVVDDNQELRQYLVSGLSS-DFNLLEADNGQKALDILKGQEV-DLVITDVMMPVMDGV 1157 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + VY L + D + + G + GA+ ++ KPF+ L+ ++ + + Sbjct: 1158 KLCKAIKQNIRTCHIPVYMLSAKADTKYQLEGLQVGADDYIPKPFSMPILKTKIQNVLRT 1217 Query: 121 Q 121 + Sbjct: 1218 R 1218 >gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii TW07627] gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591] gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii TW07627] gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 239 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|220915997|ref|YP_002491301.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953851|gb|ACL64235.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 466 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR R + G V EAT A E + P ++ D M + Sbjct: 12 RVLVVDDDPGVRYTLREILASEGLEVEEATDGEAALEKLGAQPCP-LVLTDLRMPRLDGM 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V + + + +AGA + KPF E L +R + + Sbjct: 71 ALLRKITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRRAVEALR 130 Query: 123 SKDENQFLD 131 DEN+ L Sbjct: 131 LADENERLA 139 >gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 239 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + +A + E+ P+ +++D + G+ Sbjct: 16 TRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTF-HEVNPDLVLLDLMLPGLDG 74 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L D + ++AG AGA+ ++ KPF + L + + Sbjct: 75 VEICRLIRSE---SDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLR 131 Query: 120 M 120 Sbjct: 132 R 132 >gi|319940840|ref|ZP_08015179.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319805722|gb|EFW02503.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 233 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL++D + F GF A + E +E + +V+D M G+ Sbjct: 6 RRLLIIDDDVDFVTLLVDYFTLEGFDTVPAHNGPEGLAHLAREP-FDLVVLDVMMPGMSG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++M + + V L D I G GA+ ++ KP L + + + Sbjct: 65 V-EVLKKMREKSHIPVLMLTARGDPVDRIVGLELGADDYVQKPCPPRELVARINAILRR 122 >gi|260779128|ref|ZP_05888020.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260605292|gb|EEX31587.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 224 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 1/131 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLV+ + V + F G + A + + E + +++D + + Sbjct: 1 MNKILLVEDNREVAGILFDYFESMGMELDYADNGELGLQLALSEN-FDLILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + E M+ G GA+ +L KPF+ E L M L + Sbjct: 60 GLTVCNKLREAGNNTPVLMLTALDNREDMLKGFEHGADDYLTKPFDLEILEARMHALVKR 119 Query: 121 QKSKDENQFLD 131 + + N L Sbjct: 120 YRGQVANTVLS 130 >gi|238026723|ref|YP_002910954.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] gi|237875917|gb|ACR28250.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] Length = 1248 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + +R L + V + +E P+ ++ D M + F Sbjct: 611 RILVADDNADMRHYLNSLLGGA-YRVEAVADGARLLDAARRE-RPDLVLTDVMMPNLDGF 668 Query: 63 IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ P +V V L E IA AG + +L+KPF+ L + + + Sbjct: 669 AVRGALREDPRLREVPVILLSARAGEEARIAALDAGVDDYLVKPFSARELLARIGAVLER 728 Query: 121 QKSKDE 126 + E Sbjct: 729 DRQIRE 734 Score = 83.3 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 3/89 (3%) Query: 24 FGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYYLL 81 G V A S +A P+ +++D + G+ +R MP G D + + Sbjct: 1153 EGHQVKVAYSALDALALAPS-FEPSAILLDIGLPGMDGHEVARRLRAMPAGRDAQLVAVT 1211 Query: 82 MEVDFEKMIAGARAGANSFLLKPFNRETL 110 AG ++ L+KP L Sbjct: 1212 GYGQAADRERALAAGFDAHLVKPVAMAQL 1240 >gi|119898000|ref|YP_933213.1| osmolarity response regulator [Azoarcus sp. BH72] gi|119670413|emb|CAL94326.1| response regulator [Azoarcus sp. BH72] Length = 248 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD +R++ + GF V + + +V+D + G Sbjct: 11 RVLLVDDDARLRELLSRYLQEQGFAVKAVVDAPM-MDRALHREHFDLIVLDLMLPGEDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 70 AICRRLRGAENHIPIIMLTAKGDDVDRIVGLEMGADDYLPKPFNPRELVARIQAVMRRQ 128 >gi|119512832|ref|ZP_01631899.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena CCY9414] gi|119462505|gb|EAW43475.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena CCY9414] Length = 314 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R R G+ + EA + EA CE +L P+ +++D M + F Sbjct: 14 ILIVDDEQFIRMQLRLALEREGYEIVEAQNGTEALNLCE-QLHPDIILLDAIMPDMDGFE 72 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V + D E + GA F+ KP + LR ++ L Sbjct: 73 CCTRLKSVAFSQCTPVLMITGLDDQESVDRAFEVGAIDFITKPIHWPVLRQRVKRLISQS 132 Query: 122 KSKDENQ 128 + + + + Sbjct: 133 QLQKQLE 139 >gi|329910114|ref|ZP_08275240.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] gi|327546267|gb|EGF31298.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] Length = 231 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLV+ + ++ + D GF A +V EA E LP +++D + Sbjct: 8 ILLVEDEPGIAELLQFTLADAGFSSHNAMTVQEA-RLAIAEQLPEIVLLDWMLPDGSGLT 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + R + V L E + G AGA+ ++ KPF+ L + L + Sbjct: 67 LLREWRSTAATAVLPVIMLTANGMDEDKVRGLNAGADDYITKPFSPRELVARIHSLLRRN 126 Query: 122 KS 123 ++ Sbjct: 127 RA 128 >gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ L GF AT+ A E ++ + +++D + G+ Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCRSLRSRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2] gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2] Length = 218 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 +LVD + + ++ +A + +A E +KE + +++D M + Sbjct: 1 MLVDDEKRMLDLVALYLRPHHYVCTKAANGYQALELLKKES-FDLVLLDIMMPDMDGWEV 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ +D+ + L E ++ G R GA+ ++ KPF E L M + + Sbjct: 60 CRDIRK---FSDIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEELLARMEAVLRRSA 116 Query: 123 SKDENQF 129 +F Sbjct: 117 PARRIEF 123 >gi|229028377|ref|ZP_04184501.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732925|gb|EEL83783.1| Two-component response regulator [Bacillus cereus AH1271] Length = 223 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|15807407|ref|NP_296139.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460240|gb|AAF11967.1|AE002072_9 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 373 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ H + V R D G++V A S +E P+ +++D + Sbjct: 4 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKA-REDHPDLILLDLGLPDFDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ + + L E+ + GA+ +L+KPF+ + L ++ + Sbjct: 63 GDVVQRLRKNSA---LPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 119 Query: 120 MQKSKD 125 + S+ Sbjct: 120 QRTSES 125 >gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297] gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297] Length = 233 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+LL+D + ++ + G+ + A S + E K + +++D M G+ F Sbjct: 5 SILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQI-KHHHYDLVLLDVMMPGIDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ + V V L + + I G GA+ +L KP++ L ++ L + + Sbjct: 64 -ETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIE 122 Query: 123 SKDENQ 128 D+NQ Sbjct: 123 L-DKNQ 127 >gi|325660821|ref|ZP_08149449.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472895|gb|EGC76105.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium 4_1_37FAA] Length = 233 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + G+ A + A P+ +++D + Sbjct: 1 MNKLLILVVEDDTSVRNLITTTLKAHGYRYQTAANGQTAI-LEASSYNPDIVLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++ +++ + + + I AGA+ +L KPF+ E L +R Sbjct: 60 MDGV-EIIRKIRSWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQ 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] Length = 1388 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + +G V A + E + +++D M + Sbjct: 1258 RSVLVVDDDVRNVFAITSILEFYGASVDHAPDGRKGIEKLLANPSTDLVLMDVMMPEMDG 1317 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + A +R M TD+ + + + + AGAN ++ KP + + L ++++ Sbjct: 1318 YTTMAAIRAMTRFTDLPIIAVTAKAMPDDRQKCLDAGANEYVTKPVDVDELLARVQDVL 1376 >gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 249 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD +R + GF V A A + EK P+ +V+D + + F Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEK-TSPDLVVLDVMLPDMDGFT 75 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + +L D + G G + ++ KPF E + +R + + + Sbjct: 76 VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135 Query: 124 KD 125 + Sbjct: 136 IE 137 >gi|294777730|ref|ZP_06743178.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448409|gb|EFG16961.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1350 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ + E+ + EA E P+ ++ D M + Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA++++ KPF+ E LR L + Sbjct: 1149 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIRS 1208 Query: 120 MQKSKD 125 ++ ++ Sbjct: 1209 RERLRN 1214 >gi|291572104|dbj|BAI94376.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 236 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + V A A + + E P+ +++D ++ Sbjct: 4 QKILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFD-EFNPDLVILDVNLPDTTG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F A ++M T VFV L I G GA+ ++ KPF L +R + + Q Sbjct: 63 F-ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQ 121 Query: 122 KSKDENQF 129 +S +E + Sbjct: 122 RSVEETEM 129 >gi|265752154|ref|ZP_06087947.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236946|gb|EEZ22416.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1349 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ + E+ + EA E P+ ++ D M + Sbjct: 1090 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1147 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA++++ KPF+ E LR L + Sbjct: 1148 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIRS 1207 Query: 120 MQKSKD 125 ++ ++ Sbjct: 1208 RERLRN 1213 >gi|237726641|ref|ZP_04557122.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435167|gb|EEO45244.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1350 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ + E+ + EA E P+ ++ D M + Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA++++ KPF+ E LR L + Sbjct: 1149 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIRS 1208 Query: 120 MQKSKD 125 ++ ++ Sbjct: 1209 RERLRN 1214 >gi|224537028|ref|ZP_03677567.1| hypothetical protein BACCELL_01904 [Bacteroides cellulosilyticus DSM 14838] gi|224521336|gb|EEF90441.1| hypothetical protein BACCELL_01904 [Bacteroides cellulosilyticus DSM 14838] Length = 1345 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSL-LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 + L+V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1090 KRIMLIVEDNQDICNYIAESFSD-DFEVKTAANGEQGMEQAL-NSIPDIIVSDIMMPVMN 1147 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1148 GIMMCKILKEDVRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRINNLL 1207 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1208 ESRKRLTE 1215 >gi|224367373|ref|YP_002601536.1| putative two-component response regulator receiver protein (phosphoserine phosphatase) [Desulfobacterium autotrophicum HRM2] gi|223690089|gb|ACN13372.1| putative two-component response regulator receiver protein (phosphoserine phosphatase) [Desulfobacterium autotrophicum HRM2] Length = 373 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 8/138 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + K + G+ V A + A+ E P+ +++D M G F Sbjct: 8 TILVVDDNLVNLKFMEMTLSKEGYRVITADNGTSAKTIAVAEK-PDLILLDIQMPGGDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +++ P + V +L D + + G GA ++ KPF+ + + ++ Sbjct: 67 EVIRFLKETPGTCTIPVIFLTNMTDVDSKLKGFDLGAVDYVTKPFHPLEVLARVATHLKL 126 Query: 121 QKS-----KDENQFLDAI 133 + ++ + L I Sbjct: 127 SIATNSLVANQARRLREI 144 >gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 237 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 7/123 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEA--TSVCEAREFCEKELLPNYLVIDESMEG-- 58 +L+V+ + ++ G+ V +A T + A K+ LPN +++D + G Sbjct: 4 RILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASA---MMKDQLPNMIILDWMLPGKS 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F +R + + L + + + G +GA+ ++ KPF+ + L +R + Sbjct: 61 GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120 Query: 119 QMQ 121 + Q Sbjct: 121 RRQ 123 >gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ A +E PN +++D + + Sbjct: 17 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKF-RETSPNLVILDLMLPVMDGLE 75 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ +++ + L + + G AGA+ +L+KPF+ E L +R + Sbjct: 76 VA-RRIRKTSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 131 >gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 1/121 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGV 59 M +L+ + +R+ G+ V + +A + E+ E + ++D M G+ Sbjct: 1 MKRVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGGFDVALLDIMMPGI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + V + L + I+ +GA+ ++ KPF+ L + + + Sbjct: 61 DGMQVCKKIREKNNSVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 225 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELF-AEHTIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC 7001] gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC 7001] Length = 238 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 16/138 (11%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPN----------- 48 M LL+V+ +R+ + GF V + +A ++ P Sbjct: 1 MRARLLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFA 60 Query: 49 YLVIDESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106 +V+D + G L+ +R + + + G GA+ +L+KPF Sbjct: 61 LVVLDLMLPGLGGLDVCRALRAASNF--TPILVVSARDSETDRVLGLEVGADDYLVKPFG 118 Query: 107 RETLRFAMRELPQMQKSK 124 L R L + S+ Sbjct: 119 MRELVARCRALLRRSASQ 136 >gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 231 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + ++ + G+ VF+AT+ +A +E + +++D M G+ Sbjct: 1 MFNVLIVDDEAEIIELMEVYLLNDGYKVFKATNGLDALNIINEEK-IHLVILDIMMPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + + + I G GA+ +++KPF+ L ++ + Sbjct: 60 GLQVCMKIRKEY-NIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118 Query: 121 QKSKDEN 127 +EN Sbjct: 119 YVYLNEN 125 >gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894] gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894] Length = 252 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 19 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 77 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 78 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 137 Query: 123 SK 124 ++ Sbjct: 138 NE 139 >gi|318040692|ref|ZP_07972648.1| two-component response regulator [Synechococcus sp. CB0101] Length = 246 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 + +VD R++ D G+ V +S + + + P+ +V+D + G Sbjct: 11 RIWVVDDDPEQRRLLGTYLTDQGYDVRCLSSGEQLMARLDGQ-RPDLVVLDVMLPGDDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G D+ V L D I G GA+ +L KPF L + + + + Sbjct: 70 TLLRRLRDGGDDLPVVMLTARGDGVDRIIGLEQGADDYLGKPFLPRELTARIEAVLRRR 128 >gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 230 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ G+ ATS EA + E + ++++D M + Sbjct: 1 MMDILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFK-FVLLDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R ++V + + +I G + G++ ++ KPF+ L + + + Sbjct: 60 GWETCNRIRS-FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRR 118 Query: 121 QKSKDENQ 128 ++ + Sbjct: 119 SNQHEQLR 126 >gi|152970359|ref|YP_001335468.1| putative transcriptional regulatory protein, C-terminal [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578894|ref|YP_002238379.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288935358|ref|YP_003439417.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290509408|ref|ZP_06548779.1| two-component system, OmpR family, response regulator [Klebsiella sp. 1_1_55] gi|150955208|gb|ABR77238.1| putative transcriptional regulatory protein, C-terminal [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206567952|gb|ACI09728.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288890067|gb|ADC58385.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289778802|gb|EFD86799.1| two-component system, OmpR family, response regulator [Klebsiella sp. 1_1_55] Length = 246 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G+ A + A K + +V+D M G Sbjct: 7 ILVVDDDRDIRELIVDYLEKSGYRASGAANGK-AMWSVLKNHQIDLIVLDIMMPGEDGLT 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P D+ V L D I G GA+ +L+KPF L ++ + + Sbjct: 66 LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRRT 124 Query: 122 KSKDEN 127 ++ N Sbjct: 125 RALPPN 130 >gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str. 'morsitans'] gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1] gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str. 'morsitans'] gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1] Length = 239 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V A + E + L++D + L Sbjct: 2 RILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAY-DLLILDWMLPHISGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 61 EICQQMRSHDAT--TPVLFLTAKDTVDDRVMGLDAGADDYLVKPFELRELLARVRALLRR 118 Query: 121 QKSKD 125 + D Sbjct: 119 SAATD 123 >gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU045] Length = 219 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++VD + + G+ V+ A +A + +E P+ +++D + G Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ + + L + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 120 MQKSKDENQ 128 S+ + Sbjct: 119 RHYSQPAQE 127 >gi|317478508|ref|ZP_07937667.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316905322|gb|EFV27117.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1326 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + +D + + A + EA + EK + N ++ D M + Sbjct: 1078 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSV-NIVISDIMMPVMNGT 1135 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + V L + E G GA+ +++KPF+ + L+ +R+ + Sbjct: 1136 ELCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFIE 1194 >gi|315921136|ref|ZP_07917376.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695011|gb|EFS31846.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1353 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+V+ +RK+ +F F ++EA + +A + + P+ ++ D M G+ Sbjct: 1094 TLLIVEDDDELRKLLIEIFEPI-FEIYEAKNGEDAFKIAQLNS-PDLILSDVMMPGISGI 1151 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119 A ++ + + V L E I G GA+ ++ KPFN L L Sbjct: 1152 NLCARIKSHFDTSHIPVILLTALSSVEHNIKGLNCGADDYITKPFNIRILIAKCINLLNN 1211 Query: 120 MQKSKDENQFLD 131 +K ++ + L+ Sbjct: 1212 RRKLQERYKTLE 1223 >gi|312889259|ref|ZP_07748813.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311298136|gb|EFQ75251.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL + + + G+ V + EA F + E + V+D M + Sbjct: 3 KHILLAEDDPDFGGILKQYLELAGYQVSWKMNGAEALTFFKTESA-DICVLDVMMPVMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + + +L E + G GA+ +++KPF E L ++ + + Sbjct: 62 FTLAEKITGIHPGIPFIFLTARNQKEDRLKGLGLGADDYVVKPFEVEELVLRLKNILKRT 121 Query: 122 K 122 + Sbjct: 122 E 122 >gi|293368584|ref|ZP_06615192.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292636381|gb|EFF54865.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1317 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+V+ +RK+ +F F ++EA + +A + + P+ ++ D M G+ Sbjct: 1058 TLLIVEDDDELRKLLIEIFEPI-FEIYEAKNGEDAFKIAQLNS-PDLILSDVMMPGISGI 1115 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119 A ++ + + V L E I G GA+ ++ KPFN L L Sbjct: 1116 NLCARIKSHFDTSHIPVILLTALSSVEHNIKGLNCGADDYITKPFNIRILIAKCINLLNN 1175 Query: 120 MQKSKDENQFLD 131 +K ++ + L+ Sbjct: 1176 RRKLQERYKTLE 1187 >gi|270295515|ref|ZP_06201716.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274762|gb|EFA20623.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1336 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + +D + + A + EA + EK + N ++ D M + Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSV-NIVISDIMMPVMNGT 1145 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + V L + E G GA+ +++KPF+ + L+ +R+ + Sbjct: 1146 ELCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFIE 1204 >gi|260172852|ref|ZP_05759264.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1317 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+V+ +RK+ +F F ++EA + +A + + P+ ++ D M G+ Sbjct: 1058 TLLIVEDDDELRKLLIEIFEPI-FEIYEAKNGEDAFKIAQLNS-PDLILSDVMMPGISGI 1115 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119 A ++ + + V L E I G GA+ ++ KPFN L L Sbjct: 1116 NLCARIKSHFDTSHIPVILLTALSSVEHNIKGLNCGADDYITKPFNIRILIAKCINLLNN 1175 Query: 120 MQKSKDENQFLD 131 +K ++ + L+ Sbjct: 1176 RRKLQERYKTLE 1187 >gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + + G+ + + E E + +++D + Sbjct: 1 MSRILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDW-DAILLDLMLPELN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE VRQ+ + + + ++G GA+ +++KPF E L +R + Sbjct: 60 GLEVCRRVRQV---KNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116 Query: 119 QMQKSKDEN 127 + + ++E Sbjct: 117 RRVELENEQ 125 >gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 7/122 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + F ARE P+ +++D + G+ Sbjct: 1 MKARILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRASD-PDLILLDLMLPGM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R +DV V L + D ++ G AGA+ ++ KPF L ++ Sbjct: 60 DGIQVCQQIRAE---SDVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKAR 116 Query: 118 PQ 119 + Sbjct: 117 LR 118 >gi|241204117|ref|YP_002975213.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858007|gb|ACS55674.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 457 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A A CE+ + +++D M G+ F Sbjct: 4 RILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERN-QVDLILLDIMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KTLSDELRIRA 133 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 43/127 (33%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61 +LLVD ++ V + A E + ++++ + + Sbjct: 158 VLLVDGRANSQERIVKALKPV-ADVLALSDPQAALFEA-AESAFDLVIVNANFDDYDPLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + + + E ++ G N ++++P + L + + Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275 Query: 122 KSKDENQ 128 + D + Sbjct: 276 RYNDRLR 282 >gi|160891349|ref|ZP_02072352.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492] gi|156858756|gb|EDO52187.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492] Length = 1336 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + +D + + A + EA + EK + N ++ D M + Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSV-NIVISDIMMPVMNGT 1145 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + V L + E G GA+ +++KPF+ + L+ +R+ + Sbjct: 1146 ELCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFIE 1204 >gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104] gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium subsp. avium ATCC 25291] gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium 104] Length = 226 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + + R + G+ V A++ A E P+ +++D + Sbjct: 1 MTRVLVIDDEPQILRALRINLSVRGYEVVTASTGAGAL-RAAAEHKPDVVILDLGLPDIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +A +R V L D + AGA+ ++ KPF + +R Sbjct: 60 GIDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAV 116 Query: 119 QMQKSKDENQF 129 + + E + Sbjct: 117 RRNTAASEMEQ 127 >gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 220 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LLLVD +R + D GF V A + E E EK P+ ++ D M V Sbjct: 5 LLLVDDDPGIRLALQAYLEDEGFGVTTARNAIEGLELAEKH-QPDLVITDIMMPQVDGYR 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R +P V +L + I G R G ++++ KP + E L +R L Sbjct: 64 FLQKLRALPRFRYTPVVFLTAKGQTADRIQGYRHGCDAYMPKPGDPEELVAIVRNLLDRS 123 Query: 122 KS 123 + Sbjct: 124 RQ 125 >gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis MED134] gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis MED134] Length = 227 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 7/131 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + ++ G+ V ++ EA + +K P+ +++D M Sbjct: 1 MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKH-QPHLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R + + + +AG AGA+ ++ KP + L + Sbjct: 60 PEMDGIEACEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKV 119 Query: 115 RELPQMQKSKD 125 + L + K+++ Sbjct: 120 KALLRRFKNEE 130 >gi|312960966|ref|ZP_07775471.1| two-component response regulator [Pseudomonas fluorescens WH6] gi|311284624|gb|EFQ63200.1| two-component response regulator [Pseudomonas fluorescens WH6] Length = 413 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD VRK+ L G+ A+S EA ++ P+ +++D M G+ F Sbjct: 7 TLLIVDDEPQVRKLLETLLQHEGYQTRSASSGEEALTLVAQQP-PDLILLDVMMPGMDGF 65 Query: 63 IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P +++ + L + ++G GA F+ KP L +R L ++ Sbjct: 66 EVANRLKSNPATSNIPIIMLSALNEPGARVSGLHTGAEEFINKPVEHIELWLRVRNLLRL 125 Query: 121 QKSKDENQFLDAI 133 + D+ + A+ Sbjct: 126 KSHGDQLKKHSAM 138 >gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 231 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 3/124 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+ + + + + G+ + A +A + E L +++D + + Sbjct: 1 MKNRVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEEL-ELIILDIMLPSM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F R + V + + + + I G GA+ ++ KPF+ L ++ + Sbjct: 60 DGFEICKRVREK-SSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVR 118 Query: 120 MQKS 123 Q+ Sbjct: 119 RQEM 122 >gi|307298880|ref|ZP_07578682.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915305|gb|EFN45690.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M LL+V+ + + GF+V A + + E + +++D + G+ Sbjct: 1 MK-LLVVEDEKKLLENVAAFLERKGFLVDTAQDAEDGLDLAL-ERNYDCIILDVILPGMG 58 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 EF +R+ +G+DV + + + + I G + GA+ +L KPF+ L +R L Sbjct: 59 GYEFCRFLRE-EIGSDVPIIIITALGEIDSRIEGLKIGADDYLPKPFDLRELEARVRALI 117 Query: 119 QMQKSKDE 126 + + + E Sbjct: 118 RRNQLRSE 125 >gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 239 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 ++ D + + + + + GF A A E P +++D M E Sbjct: 1 MIADDNDGIVDILKTYVSKEGFTPIIAYDGESAVNMF-NEYSPLLILLDVMMPKKDGFEV 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ ++V + + + + I G GA+ +++KPF+ + +R + + Sbjct: 60 CQEIRK---TSNVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRRID 116 Query: 123 SKDENQ 128 +E++ Sbjct: 117 ISEEDK 122 >gi|291518725|emb|CBK73946.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 236 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 7/121 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L VD + +R + + L G+ V EA A + + +++D M G Sbjct: 4 QKILTVDDNEEIRNIIKILLESEGYEVLEACDGEAALSMV--DDSIDLIILDIMMPGKSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ +R+ + + +L + G G + +L KPF+ L ++ L + Sbjct: 62 LDVCKIIREK---YQMPILFLTAKGTDSDKSLGLLIGGDDYLSKPFSHAELTARVKSLLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 232 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ + L+ D V + G+ V + EA + + +++D M Sbjct: 1 MNRISILIADDEAEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQP-IDLVILDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAQ---YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|167764902|ref|ZP_02437023.1| hypothetical protein BACSTE_03294 [Bacteroides stercoris ATCC 43183] gi|167697571|gb|EDS14150.1| hypothetical protein BACSTE_03294 [Bacteroides stercoris ATCC 43183] Length = 1501 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 LLV+ + +R R +F + + EA + E K LP+ ++ D M Sbjct: 1233 LLVEDNSELRIFLRSIFASE-YRIVEAANGMEGLNKALK-FLPDIIISDVMMPEKDGIAM 1290 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ ++ L Q Q Sbjct: 1291 TRELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLAQRQ 1350 Query: 122 KSK 124 K + Sbjct: 1351 KLQ 1353 >gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440] Length = 252 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A + A ++ P+ +V+D + + F Sbjct: 27 RVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAA-RQFQPDAVVLDVMLPDLDGF 85 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V V +L E +AG G + ++ KPF+ E + +R L + Sbjct: 86 AVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 143 >gi|325273090|ref|ZP_08139394.1| histidine kinase [Pseudomonas sp. TJI-51] gi|324101779|gb|EGB99321.1| histidine kinase [Pseudomonas sp. TJI-51] Length = 305 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G V AT EA E++ + +++D +M + + Sbjct: 185 RILLVEDNPVNQLVAKGMLAKLGCQVELATQGAEALAALERQP-FDLVLMDCNMPVMDGY 243 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +RQ + + L E+ AG N +L KPF RE L + Sbjct: 244 EASRRIRQSGRWPHLPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALV 297 >gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 234 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LL+D ++R+ GF VF A S + ++ P+ +++D ++ G+ Sbjct: 3 KSILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTP-PDLVLLDINLPGMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V ++ + G GA+ ++ KPF+ L ++ + + Sbjct: 62 L-DALRRFREEVGAPVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVLRRV 120 Query: 122 KSKDENQ 128 +E + Sbjct: 121 SGGEERK 127 >gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + + + G+ V A EA E P+ +V+D + Sbjct: 4 KILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAK-SFESYPDLIVLDIMLPKKNGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++Q D + L + D + G GA+ +L KPF+ L ++ + Sbjct: 63 DVCKEIQQKL---DTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHLRR 119 Query: 121 QK 122 K Sbjct: 120 AK 121 >gi|300088402|ref|YP_003758924.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528135|gb|ADJ26603.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 231 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + +V+ + + ++ + GF V AT +E P+ ++ D M G+ Sbjct: 1 MAKIAVVEDDRNLADLLKYNLSREGFSVVTATDGSAGLALIRREK-PDIIISDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + T V L + + G GA+ +L KPF+ L ++ + + Sbjct: 60 GFELTR-TLRTETTAPVLLLTARSEEIDKVLGLEMGADDYLSKPFSMRELVARVKAMLRR 118 Query: 121 QKSKD 125 + Sbjct: 119 LEMTA 123 >gi|297568325|ref|YP_003689669.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924240|gb|ADH85050.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 464 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 1/126 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R+ + D GF+ A + + E E E + + +++D M GV Sbjct: 7 RRILVVDDEAGIRESMAGILADEGFVALTAENGEQGLELLENEPV-DLVLLDIWMPGVDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R L + V + E + R GA F+ KP + + + A+ ++ Sbjct: 66 MEILGRLRDLYPHLPVIMISGHGTIETAVQATRMGAYDFIEKPLSYDKVILAINNALRLS 125 Query: 122 KSKDEN 127 + ++EN Sbjct: 126 RLEEEN 131 >gi|229095233|ref|ZP_04226225.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228688092|gb|EEL41978.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 223 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +A S EA E E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIE-QKKFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|229101340|ref|ZP_04232084.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228682045|gb|EEL36178.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 223 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +A S EA E E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIE-QKKFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 232 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ ++R+ + G+ V A EA E EK + P+ +++D + G+ Sbjct: 9 RILMVEDDAVIREATQLTLERHGYDVTTAEDGLEAIETFEK-VHPDAVMLDVMLPGLDGI 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + + D ++ G AGA+ ++ KPF+ + L +R + + Sbjct: 68 SVCRRIRE---TSLVPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRR 124 >gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 241 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 7/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + + FGF V A + + + P+ +++D + Sbjct: 16 TRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADP-PDLVILDVMLPDTDG 74 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR + + L D I G GA+ +L KPF L ++ + + Sbjct: 75 LAVCREVRADSR---IPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLR 131 Query: 120 M-QKSKDENQFLDAI 133 + E L A+ Sbjct: 132 RGTRDDAEALRLGAL 146 >gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V A+ E + L++D + L Sbjct: 2 RILLVDDEEALTAPPHRMLRREGYDVDVASDGQTG-EQLATHQPYDLLILDWMLPERSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VRQ V V +L + + G AGA+ +L+KPF + L +R L + Sbjct: 61 DLCRSVRQRD--RQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRR 118 Query: 121 QKSKDENQ 128 ++ ++ Sbjct: 119 SPRQETSE 126 >gi|27364655|ref|NP_760183.1| Copper-sensing two-component system response regulator CpxR [Vibrio vulnificus CMCP6] gi|37681297|ref|NP_935906.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016] gi|320155050|ref|YP_004187429.1| copper-sensing two-component system response regulator CpxR [Vibrio vulnificus MO6-24/O] gi|27360800|gb|AAO09710.1| Copper-sensing two-component system response regulator CpxR [Vibrio vulnificus CMCP6] gi|37200048|dbj|BAC95877.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016] gi|319930362|gb|ADV85226.1| copper-sensing two-component system response regulator CpxR [Vibrio vulnificus MO6-24/O] Length = 227 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + + + + GF V EA + + E + +++D M + Sbjct: 1 MANILLIDDDTELTSLLTEVLSYEGFNVTEANDGEQGLQALSAE--IDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ D V L + + + G GA+ +L KPF+ L ++ + + Sbjct: 59 G-IDTLKKLREQWDTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIKAILRR 117 Query: 121 QKSKD 125 + Sbjct: 118 TSATK 122 >gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + + + G+ V ++ E E + +++D + Sbjct: 1 MSRILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSED-FDAILLDLMLPEIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R+ + + + ++G GA+ +++KPF E L +R + Sbjct: 60 GIEVCRRIRREKI---TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116 Query: 119 QMQKSKDEN 127 + + ++ Sbjct: 117 RRVDLETQD 125 >gi|47567165|ref|ZP_00237881.1| response regulator DrrA [Bacillus cereus G9241] gi|49480172|ref|YP_034844.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144720|ref|YP_082105.1| response regulator [Bacillus cereus E33L] gi|165871786|ref|ZP_02216430.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635708|ref|ZP_02394019.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640695|ref|ZP_02398956.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688522|ref|ZP_02879729.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|177653790|ref|ZP_02935891.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568207|ref|ZP_03021116.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196035772|ref|ZP_03103175.1| DNA-binding response regulator [Bacillus cereus W] gi|196041367|ref|ZP_03108661.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046799|ref|ZP_03114021.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218901780|ref|YP_002449614.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222094337|ref|YP_002528396.1| response regulator [Bacillus cereus Q1] gi|225862556|ref|YP_002747934.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227816544|ref|YP_002816553.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228913274|ref|ZP_04076908.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925774|ref|ZP_04088858.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932013|ref|ZP_04094905.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944339|ref|ZP_04106712.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089647|ref|ZP_04220909.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229154289|ref|ZP_04282409.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|229182915|ref|ZP_04310148.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|254684337|ref|ZP_05148197.1| response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722139|ref|ZP_05183928.1| response regulator [Bacillus anthracis str. A1055] gi|254738801|ref|ZP_05196504.1| response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743813|ref|ZP_05201497.1| response regulator [Bacillus anthracis str. Kruger B] gi|254755025|ref|ZP_05207059.1| response regulator [Bacillus anthracis str. Vollum] gi|254762241|ref|ZP_05214085.1| response regulator [Bacillus anthracis str. Australia 94] gi|301052236|ref|YP_003790447.1| response regulator [Bacillus anthracis CI] gi|47556221|gb|EAL14556.1| response regulator DrrA [Bacillus cereus G9241] gi|49331728|gb|AAT62374.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978189|gb|AAU19739.1| response regulator [Bacillus cereus E33L] gi|164712511|gb|EDR18044.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511410|gb|EDR86795.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528967|gb|EDR91723.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170667547|gb|EDT18303.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081182|gb|EDT66258.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560699|gb|EDV14675.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991739|gb|EDX55704.1| DNA-binding response regulator [Bacillus cereus W] gi|196022334|gb|EDX61019.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196027852|gb|EDX66465.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218539177|gb|ACK91575.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221238394|gb|ACM11104.1| response regulator [Bacillus cereus Q1] gi|225790637|gb|ACO30854.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227002844|gb|ACP12587.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228600539|gb|EEK58126.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228629113|gb|EEK85820.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228693677|gb|EEL47378.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228815241|gb|EEM61489.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827596|gb|EEM73338.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833789|gb|EEM79342.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846325|gb|EEM91343.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374405|gb|ADK03309.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 234 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + G+ VF+A + E E ++E + +++D M G+ Sbjct: 5 NILVVDDEKEIADLVEIYLVSDGYKVFKANNAKEGLEILDQEE-IHLVLLDIMMPGMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + L + I G GA+ +++KPFN L ++ + Sbjct: 64 EMCRKIRE---TNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 Query: 121 QKSKDEN 127 + N Sbjct: 121 YTQLNPN 127 >gi|239905419|ref|YP_002952158.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239795283|dbj|BAH74272.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 229 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L++D +RK+ +G+ V E EA ++L P+ +++D M G LE Sbjct: 5 VLIIDDDLKLRKMLGDYLAGYGYEVRELPDGGEA-AKALEQLRPSVVILDIMMPGKDGLE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +A +R + V V L + D + G GA+ +L KPFN L +R + Sbjct: 64 VLADIR---RASTVPVIMLTAKGDPMDRVVGLEMGADDYLPKPFNLRELLARIRAALRRH 120 Query: 122 KSKDENQ 128 + N+ Sbjct: 121 APEAPNK 127 >gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|116748153|ref|YP_844840.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697217|gb|ABK16405.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 227 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+V+ + + + GF VF A EA KE P +V+D + G Sbjct: 5 SVLIVEDDDDILHLLAYNVRAAGFAVFTAQEGYEALRIA-KERRPGLIVLDLMIPGADGF 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ + V L + I G GA+ +++KPF+ L +R + + Sbjct: 64 EVCRELKRGSDTRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAVLRR 123 >gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] Length = 228 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 2/131 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ + G+ V A EA E +K + ++ D M + Sbjct: 3 KRILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQK-YSIDLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 + L D ++ + I GA+ F+ KPF+ L + + + Sbjct: 62 YDLIGEVQYLAPDQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRRI 121 Query: 121 QKSKDENQFLD 131 +S ++ L Sbjct: 122 HRSAGADEKLQ 132 >gi|300787746|ref|YP_003768037.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] gi|299797260|gb|ADJ47635.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] Length = 1361 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D + +R L D + V EA E P ++ D M L Sbjct: 612 RVLVADDNADMRDYLVRLLRD-DYAVTAVRDGVEAFAAACAEP-PELIISDVMMPRLDGL 669 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R P V V L E + G AGA+ +L+KPF+ L +R Q+ Sbjct: 670 GLLAELRGDPRTAAVPVLLLSARAGQEAAVDGLAAGADDYLVKPFSARELLARVRTTVQL 729 Query: 121 QKSKDENQF 129 + + ++ Sbjct: 730 ARLRTQHAR 738 >gi|300726093|ref|ZP_07059550.1| transcriptional regulatory protein ResD [Prevotella bryantii B14] gi|299776563|gb|EFI73116.1| transcriptional regulatory protein ResD [Prevotella bryantii B14] Length = 230 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +L+VD + ++ + G++V A S EA + L++D M Sbjct: 1 MKDESYRILVVDDEEDLCEILKFNLEMEGYIVNTANSAEEALTLDIASY--HLLLLDVMM 58 Query: 57 EGVLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 G+ F ++ + + +L + + G GA+ ++ KPF+ + + Sbjct: 59 GGMSGFALAKQLKSNATTASIPIVFLTAKDTENDTVTGFTLGADDYIAKPFSIREVILRI 118 Query: 115 RELPQMQKSKD 125 + + + ++ Sbjct: 119 KAVLRRTAHQN 129 >gi|242280761|ref|YP_002992890.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242123655|gb|ACS81351.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 303 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + V L + V A + +A + + P+ +++D M + Sbjct: 6 KILIVDDERLNLNVLSDLLRQ-DYKVVLAKNGNQALDRVNSDNPPDLVLLDVLMPEMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ D+ V ++ G GA ++ KPF+ ++ ++ + Sbjct: 65 EVLRKIKTSDKSKDIPVVFITALDSEHDEARGLEMGAVDYIRKPFHPPIVKARIKNHLTI 124 Query: 121 QKSKDENQFLDAI 133 + + + L + Sbjct: 125 ARQRKLLEGLANL 137 >gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC 29799] gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC 29799] Length = 229 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L+VD + + GF VF+ + +A ++ +E L + ++D + + Sbjct: 1 MKANILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERL-DLAILDVMLPDI 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R+ V L + I G GA+ ++ KPFN L ++ Sbjct: 60 SGFTLCGEIRRE---HHFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQ 116 Query: 118 PQMQKSKDENQF 129 + +EN Sbjct: 117 LRRYTHYNENDR 128 >gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP 31758] gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC 29473] gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC 33638] gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC 43970] gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia pseudotuberculosis IP 31758] gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC 33638] gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC 29473] gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC 43970] Length = 239 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10] gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP 32953] gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua] gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516] gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F] gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola] gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. F1991016] gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. IP275] gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. E1979001] gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII] gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+] gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92] gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Pestoides A] gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. India 195] gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Nepal516] gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27] gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003] gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10] gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92] gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola] gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. IP275] gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. F1991016] gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. E1979001] gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. B42003004] gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Nepal516] gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. India 195] gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Pestoides A] gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004] gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038] gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27] gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003] gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 239 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|332662093|ref|YP_004444881.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332330907|gb|AEE48008.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 227 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ ++ G+ V A+S EA EKE PN +V+D M + Sbjct: 5 KILIVDDEPDILEILQYNLEKEGYQVVTASSGEEALVVAEKE-QPNLIVLDIMMPKIDGV 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + +L + IA G + ++ KP ++ L + Sbjct: 64 EVCRILRTKPEFDRTAITFLTAREEDYSQIAALDVGGDDYITKPIRPRVFISRIKALLRR 123 Query: 121 QKSKDENQFLDAI 133 + + LD I Sbjct: 124 SDRLPQEEGLDVI 136 >gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] Length = 231 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 MD +L++D + ++ + G+ V S + + K+ P+ +++D + + Sbjct: 1 MDRILIIDDEEHILELLDFNLSLEGYEVITTMSSLDGLDII-KQDKPDLVLLDWMLPKMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R D+ V L + E + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GIELLNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNIL 119 Query: 119 QMQKSKDEN 127 + +D N Sbjct: 120 KRYNKQDSN 128 >gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 229 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F D G+ + A++ EA E+C+K+ + +++D M + F Sbjct: 4 KILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDKD--IDIILLDIMMPNIDGF 61 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +L I G G + +++KPF+ + L+ ++ + Sbjct: 62 QICQKIR---DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118 Query: 121 QKSKDENQF 129 +K N Sbjct: 119 EKRVPLNNR 127 >gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM 18228] gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM 18228] Length = 228 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L+++ V + + + G+ + A ++ ++ D + + Sbjct: 1 MNTILIIEDEERVAGLLKAGLEENGYQTWVAYDGAMGLRLFKQHT-FQLVISDVILPKMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R++ V + L + + G AGA+ +++KPF+ L ++ L Sbjct: 60 GFELCKEIRKI--NPSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLL 117 Query: 119 QM 120 + Sbjct: 118 KR 119 >gi|220906815|ref|YP_002482126.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] gi|219863426|gb|ACL43765.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] Length = 584 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 7/139 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M S+L++D V G+ ++ A+S A +K P+ +++D M + Sbjct: 13 MSSILIIDDDPDNFDVIDTFLAQQGYHLYYASSGRTAIADLDK-FKPDLILLDVMMPDMT 71 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E ++ MP V + + + + AGA+ F+ KP + L +R + Sbjct: 72 GIEVCRWIKTMPEWQAVPIIMVTALATKKNLAECFAAGADDFICKPLDSLELIARVRSML 131 Query: 119 QMQKSKDE----NQFLDAI 133 ++ + ++ N L+A+ Sbjct: 132 RIHRQYEQIAAFNLQLEAM 150 >gi|94967535|ref|YP_589583.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] gi|94549585|gb|ABF39509.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] Length = 427 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD S + + + L G++V A S EA E P+ +++D M G Sbjct: 111 QHILVVDDSPELAMLMQELLAAHGYLVQLAYSAAEA-EREIAGRPPDLILLDVQMPGKNG 169 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ P + + + D E I G +GA+ FL KP E L ++ L + Sbjct: 170 YDLCRELKDNPETRLIPIVMITGLTDRENRIRGIESGADEFLNKPIFPEELFARVKSLLR 229 Query: 120 MQKSKDENQFLDAI 133 +++ DE +A+ Sbjct: 230 LKEFTDELDNAEAV 243 >gi|148257503|ref|YP_001242088.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146409676|gb|ABQ38182.1| putative sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 1202 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL D + +R R L + V EA P+ ++ D M + Sbjct: 613 RILLADDNADMRDYVRRLLEAR-YEVETVGDG-EAALAAMARAKPDLVLSDVMMPRIDGM 670 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A VR P + V + L E + G +AGA+ +L+KPF+ L + +M Sbjct: 671 QLLARVRADPKVSTVPIILLSARAGEESRVEGMQAGADDYLIKPFSASELLARVEAHLKM 730 Query: 121 QKSKDE 126 + + E Sbjct: 731 AQLRAE 736 >gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 232 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD ++ K R G V A EA KE + +++D + Sbjct: 1 MAKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMA-KETEYDIVLLDVMLPKFD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ +++ + + + I G GA+ ++ KPFN ++ ++ + Sbjct: 60 GFEVCQAIRE---FSEMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIM 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|218129056|ref|ZP_03457860.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697] gi|217988691|gb|EEC55010.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697] Length = 1458 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 5/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + + + D F + A E + P+ +V D+ M + Sbjct: 1199 SVLVVDDNVDLCNMLKLQLEDR-FNIHLAHDGVEGLKMVNFHH-PDVVVTDQMMPCMDGM 1256 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119 + +R + + V L + D + I GAN++++KPF+++ L + +L + Sbjct: 1257 EMLKRIRGDFQISHIPVIMLTAKGDEDSKIQAISQGANAYIVKPFSKDYLVVRIEQLLGE 1316 Query: 120 MQKSKDEN 127 ++ +++ Sbjct: 1317 RKRFREQM 1324 >gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 232 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++LLVD VR+ + G V A++ +A EK + P+ ++ D M Sbjct: 6 TILLVDDEPSVRESVQAYLEYSGDLTVKVASNATDAWRILEK-ITPDVIISDIMMPEVDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +F+ +R P + V +L I G +G +++L KPF+ E L ++ L + Sbjct: 65 YQFLEKLRDDPRFQGIPVIFLTARGMTSDRIKGYNSGCDAYLPKPFDPEELEAIVKNLLE 124 Query: 120 MQKSKDE 126 +K+ ++ Sbjct: 125 RRKTNEK 131 >gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC 19977] gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus] Length = 225 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + GF + +A +EL P+ +++D + G+ Sbjct: 3 QRILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAV-RELRPDLVLLDLMLPGMNG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V + L + D ++ G +GA+ +++KPF + L +R + Sbjct: 62 IDVCRVLRSDSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] Length = 620 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R + + G+ V +A EA + +KE + +++D M + Sbjct: 3 NTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKEN-IHLMILDIMMPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ ++ + L + + I G GA+ +L KPFN L ++ L + Sbjct: 62 IEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Salinibacter ruber DSM 13855] gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Salinibacter ruber DSM 13855] Length = 253 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 46/121 (38%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+ + + F G+ V AT +A + + +++D + F Sbjct: 14 RLLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G D V L ++ + E + G GA+ ++ KPF+ + L + + + Sbjct: 74 EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLSRSQ 133 Query: 123 S 123 S Sbjct: 134 S 134 >gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 240 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+VD + + R G+ V+ A A + P+ +++D + + Sbjct: 1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHK-PDLMILDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I + + + + + L + + AGA+ ++ KPF + L +R + Sbjct: 60 G-IDVIGGVRGWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRR 118 Query: 121 QK 122 + Sbjct: 119 AR 120 >gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + N GF A + EA E E P +++D + + F Sbjct: 4 KILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEK-PEVILLDIMLPDIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++ + + + I G GA+ +++KPFN L ++ + + Sbjct: 63 EICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRR 120 >gi|297565290|ref|YP_003684262.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849739|gb|ADH62754.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 223 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 5/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+V+ VR R + G V EA + EA E + +V+D + Sbjct: 2 MPKLLVVEDEPAVRMGLRLSLSRAGHQVLEAATATEAWEQL---PQADLVVLDWMLPDEP 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + +R+ ++ V L + G GA+ +L KPF+ L ++ L Sbjct: 59 GVRLLERLRRDGRYENLPVLMLTARAGEGDRVEGLTRGADDYLTKPFSTPELLARIQALL 118 Query: 119 QMQKSKDENQF 129 + + Sbjct: 119 RRSGKSGRIER 129 >gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 209 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 6/121 (4%) Query: 13 VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMP 70 +R++ ++FG+ EA + EA + E +++V+D M + +R+ Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGHSVCKEIRK-- 57 Query: 71 LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130 +DV + +L + + + G R GA+ +++KPF+ L M + + +++ + + Sbjct: 58 -TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEI 116 Query: 131 D 131 Sbjct: 117 Q 117 >gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 209 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 6/121 (4%) Query: 13 VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMP 70 +R++ ++FG+ EA + EA + E +++V+D M + +R+ Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGLSVCKEIRK-- 57 Query: 71 LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130 +DV + +L + + + G R GA+ +++KPF+ L M + + +++ + + Sbjct: 58 -TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEI 116 Query: 131 D 131 Sbjct: 117 Q 117 >gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A] gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis] gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A] gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 240 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ +VD + ++ + + GF A E + P+ +++D + G+ Sbjct: 1 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L + D ++AG AGA+ ++ KPF L +R ++ Sbjct: 60 GTEVA-RRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRI 118 Query: 121 QKSKDEN 127 K E+ Sbjct: 119 AKPAAED 125 >gi|85060158|ref|YP_455860.1| DNA-binding transcriptional regulator CpxR [Sodalis glossinidius str. 'morsitans'] gi|84780678|dbj|BAE75455.1| two-component response regulator [Sodalis glossinidius str. 'morsitans'] Length = 232 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVQVAHDGEQALSQLDSSIDLLLLDVMMPRKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQQ---QQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQFLDA 132 ++ Q +A Sbjct: 118 SHWTEQQQTGEA 129 >gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ V EA EA E+ + + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 IESR 120 >gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D +R++ G V A++ EA E + P+ +V+D M + F Sbjct: 14 KILVADDEANIRRILETRLTMQGHEVLMASNGAEALELF-RGSEPDLVVLDVMMPELDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R ++V + L D I G + GA+ +++KPF+ + L +R + + Sbjct: 73 AVVERIRAQ-SEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRAN 131 Query: 123 SKD 125 + Sbjct: 132 TSQ 134 >gi|189465203|ref|ZP_03013988.1| hypothetical protein BACINT_01548 [Bacteroides intestinalis DSM 17393] gi|189437477|gb|EDV06462.1| hypothetical protein BACINT_01548 [Bacteroides intestinalis DSM 17393] Length = 1293 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L++D + + + + + ++ + + A + E E ++E PN ++ D M + Sbjct: 1035 NTILIIDDNKELLWMLKDILSNE-YAILTAENGEEGLELLKQET-PNLIITDIMMPKIDG 1092 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + L + ++ I G +GA++++ KPFN + LR +++L + Sbjct: 1093 ITLTKQLKNNKHTAHIPLVILSAKNTTDEKIEGIESGADAYIPKPFNTQYLRTIIKQLIK 1152 Query: 120 MQKSKDE 126 Q+ + Sbjct: 1153 KQEELKQ 1159 >gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] Length = 226 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + +A + E+ P+ +++D + G+ Sbjct: 3 TRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAF-HEVSPDLVLLDLMLPGLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L D + ++AG AGA+ ++ KPF + L + + Sbjct: 62 VEICRLIRSE---SDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 247 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A +E P+ +V+D + + Sbjct: 21 RVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAV-RAAREFRPDAVVLDVMLPDLDGL 79 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E +AG AG + ++ KPF+ E L +R L + Sbjct: 80 EVLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSG 139 Query: 123 SKDENQ 128 Q Sbjct: 140 MTAAQQ 145 >gi|317477946|ref|ZP_07937129.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316905860|gb|EFV27631.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 1357 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + +R + +F F + V A E E +PN +V D M + Sbjct: 1095 KILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSE-MPNIVVSDVVMPNMSGT 1152 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G R GA+ ++ KPFN L L Sbjct: 1153 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVNS 1212 Query: 121 QKSKDE 126 + E Sbjct: 1213 RILLQE 1218 >gi|270294949|ref|ZP_06201150.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274196|gb|EFA20057.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1357 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + +R + +F F + V A E E +PN +V D M + Sbjct: 1095 KILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSE-MPNIVVSDVVMPNMSGT 1152 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G R GA+ ++ KPFN L L Sbjct: 1153 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVNS 1212 Query: 121 QKSKDE 126 + E Sbjct: 1213 RILLQE 1218 >gi|224370342|ref|YP_002604506.1| putative two-component hybrid sensor and regulator protein [Desulfobacterium autotrophicum HRM2] gi|223693059|gb|ACN16342.1| putative two-component hybrid sensor and regulator protein [Desulfobacterium autotrophicum HRM2] Length = 873 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 59/132 (44%), Gaps = 5/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ + + ++++ + +F +++ A + + + P+ ++ D M G+ F Sbjct: 549 ILIAEDNVGIQELLAIALER--YTLFISSNGQAAWQAID-GIKPDLVISDIMMPGMDGFS 605 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + V + + + I + GA+ +L KPF+ L+ ++ + + Sbjct: 606 LLERIRTNGKTSTIPVIVITSLTEQDDRIKSLQLGADDYLTKPFHHLELQARVKNVLSLH 665 Query: 122 KSKDENQFLDAI 133 K + E + + Sbjct: 666 KLEREKTRSEQL 677 >gi|160888601|ref|ZP_02069604.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492] gi|156861915|gb|EDO55346.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492] Length = 1343 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + +R + +F F + V A E E +PN +V D M + Sbjct: 1081 KILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSE-MPNIVVSDVVMPNMSGT 1138 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G R GA+ ++ KPFN L L Sbjct: 1139 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVNS 1198 Query: 121 QKSKDE 126 + E Sbjct: 1199 RILLQE 1204 >gi|90581397|ref|ZP_01237192.1| osmolarity response regulator [Vibrio angustum S14] gi|90437374|gb|EAS62570.1| osmolarity response regulator [Vibrio angustum S14] Length = 239 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLARETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124 Query: 123 SKD 125 + Sbjct: 125 IEA 127 >gi|317152847|ref|YP_004120895.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316943098|gb|ADU62149.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 1150 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 2/127 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + +V + N G A + A E P+ +++D M + Sbjct: 715 VLVVDDEPVNLQVVAAILNIEGISFRTAANGAMALRMLEDGDQPDMVLLDVMMPDMSGYA 774 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + + L ++ E ++ G AGAN +L KPF RE L + +++ Sbjct: 775 VCRELRKTYQASVLPIVLLTVKNRVEDIVEGFSAGANDYLTKPFAREELGARVALQIKLK 834 Query: 122 KSKDENQ 128 + + + Sbjct: 835 AAYEILE 841 >gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M S+L+ D + ++ G+ V +AT EA + + +++D M Sbjct: 1 MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAV-LIIQSQPIDLVILDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + RQ+ + ++ + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVT-RQIRVKYNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|218779221|ref|YP_002430539.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218760605|gb|ACL03071.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 466 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + G+ V A EA +K + L+ D + + Sbjct: 8 KILIVDDELGMREFLGLMLERDGYEVSTAGGGREALGLLKKHSY-DLLLCDIRLGDISGL 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 M L V + E + GA ++ KPF+ + LR + + + Sbjct: 67 EVLRMAMGLNPKPVVIMISAFSSTESAVKAMNEGAFDYIPKPFDNDELRGTIANALERKT 126 Query: 123 SKDENQFLDA 132 + E Q L+ Sbjct: 127 LEREKQILEE 136 >gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 247 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A + +A E P+ +V+D + F Sbjct: 16 RVLVVDDEPNILELLTAALRLSGFEVRGAATGADAL-RAASEFGPDIVVLDVMLPDQDGF 74 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V +L E IAG AG + ++ KPF+ + + +R + + + Sbjct: 75 SVARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVR 134 >gi|119483258|ref|ZP_01618672.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC 8106] gi|119458025|gb|EAW39147.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC 8106] Length = 753 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + K + + V A + A E + P +V+D M + Sbjct: 11 VLVVDDYPLNLKFLCASLSRAKYEVLVAQTGESALEIAVSQ-QPELIVLDIRMPEMDGYE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ D+ V ++ + + + G + GA ++ KP + E ++ ++ Sbjct: 70 VCRQLKASPVTRDIPVIFMTALSETDNKVKGLKLGAADYITKPIHPEEALSRIQTHLSVR 129 Query: 122 KS 123 + Sbjct: 130 RL 131 >gi|222056452|ref|YP_002538814.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221565741|gb|ACM21713.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 457 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++VD +R+ L G+ V + S A + + ++ D +M G+ Sbjct: 4 TIMVVDDEQSMREFLVILLEREGYAVQQCESAACALSLLQSSG-FDLVISDVNMPGLNGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V + E+ + + GA ++ KPF E ++ ++ + Sbjct: 63 ELLERIKSTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVKNALEKSS 122 Query: 123 SKDENQFLD 131 + EN+ L Sbjct: 123 LQKENRRLK 131 >gi|114561406|ref|YP_748919.1| osmolarity response regulator [Shewanella frigidimarina NCIMB 400] gi|114332699|gb|ABI70081.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 241 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V A + + + + + LV+D + G Sbjct: 7 KILVVDDDMRLRSLLERYLIEQGFQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + L + D I G GA+ +L KPFN L ++ + + Sbjct: 66 SICRRLRQQEN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 Query: 121 Q 121 Q Sbjct: 124 Q 124 >gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A E E + P+ L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEG--PDVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115 Query: 119 QMQKSKD 125 + K K+ Sbjct: 116 RRVKKKE 122 >gi|255013019|ref|ZP_05285145.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. 2_1_7] Length = 1359 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL+VD + R+ + + + V A +A + +E LP+ ++ D M + Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1169 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + G AGA+ ++ KPFN E L +R L +M Sbjct: 1170 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1229 Query: 121 QKSKDE 126 +K + Sbjct: 1230 KKKMQK 1235 >gi|224540566|ref|ZP_03681105.1| hypothetical protein BACCELL_05480 [Bacteroides cellulosilyticus DSM 14838] gi|224517816|gb|EEF86921.1| hypothetical protein BACCELL_05480 [Bacteroides cellulosilyticus DSM 14838] Length = 1337 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R+ R+ +D + + + +A E KE +PN ++ D M + Sbjct: 1078 KILIVEDNDELREYLRNTLSD-DYNIQVCSDGKQALEIV-KEYMPNMIISDIMMPEMRGD 1135 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + + L + +I G + GA+ +++KPFN LR + + Sbjct: 1136 ELCHVLKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATISNILTN 1195 Query: 121 QKSKD 125 + Sbjct: 1196 RSLLR 1200 >gi|163759328|ref|ZP_02166414.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Hoeflea phototrophica DFL-43] gi|162283732|gb|EDQ34017.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Hoeflea phototrophica DFL-43] Length = 457 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A A C+ + + +++D M G+ F Sbjct: 4 RILVVDDIPANVKLLEARLMAEYFEVLTAADGMTALSICD-QTQVDLILLDIMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + V + + G +AGA+ FL KP N L ++ L + Sbjct: 63 EVCERLKRNPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMTRVKSLVRF 122 Query: 121 QKSKDENQFLDA 132 + DE + Sbjct: 123 KALSDELRLRAE 134 Score = 62.1 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 2/123 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLEF 62 +LLV++ + N + A E EK + L Sbjct: 158 VLLVENRANAQDRMGRALNGV-AEITVIGDPQAALFEAAEKPYELIIVSSALEDYDPLRL 216 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +R + + V + + + +I G N +L++P + L + ++ Sbjct: 217 CSQLRSLERTRFIPVLVVAEQGEENLVIRALELGVNDYLVRPLDPNELVARSVTQIRRKR 276 Query: 123 SKD 125 D Sbjct: 277 YTD 279 >gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 232 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++V+ + +V + + +A E E + +++D + + Sbjct: 1 MSKIMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDW-DLVLLDVMIPCLS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + V L + G GAN ++ KPFN E L +R + Sbjct: 60 GLEVLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALR 118 >gi|189424183|ref|YP_001951360.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189420442|gb|ACD94840.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 452 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 3/132 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD V R F + + A A + + P+ +++D M G E Sbjct: 18 ILVVDDDANNLAVVRDCLVAFNYTILVAEDGESAVKRADYA-RPDLILLDVMMPGIDGYE 76 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V ++ + + G AGA ++ KPF RE L + + Sbjct: 77 TCRRLKALKSTHAIPVLFMTALAETGNKVKGLEAGAVDYITKPFQREELLARIAVHLHNR 136 Query: 122 KSKDENQFLDAI 133 + Q + Sbjct: 137 ELTKRLQEAKEL 148 >gi|117620336|ref|YP_857562.1| two-component hybrid sensor and regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561743|gb|ABK38691.1| two-component hybrid sensor and regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 376 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD R + R L + G+ V EAT +A + E P+ +++D +M + Sbjct: 1 MSEILIVDDMASNRYILRSLLEEAGYRVREATDGLQAVDTA-TEFPPDLVLMDINMPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++Q+P + V ++ + +AG ++ KPF++ + ++ Sbjct: 60 GYEACRRIKQLPGQWCLPVLFISTNSGIGALEQAFQAGGCDYVSKPFHQLEVLARVQNQL 119 Query: 119 QMQKSKDEN 127 ++++ + Sbjct: 120 RLKELGRQQ 128 >gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD +R++ + +++ EA + +A + + + +++D + + Sbjct: 8 LLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDY-DLILLDLMLPKMDGIQ 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A + + + L + + I G GA+ +++KPF+ + + + + +S Sbjct: 67 AAEKIRES-KNTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQS 125 Query: 124 KDENQ 128 + Sbjct: 126 GKPKE 130 >gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + + + GF+V A EA + +++D + Sbjct: 9 RILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAI-RLSSSNPYDVIILDVLLPIKNGF 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R G V L ++ + G GA+ +L+KPF + L + L + Sbjct: 68 EVCSELRA--SGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRR 125 Query: 121 QK 122 + Sbjct: 126 PR 127 >gi|315498662|ref|YP_004087466.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315416674|gb|ADU13315.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 241 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ + GF V A S E + + +V+D M G Sbjct: 14 ILVVDDDFDLRELISGFLSQNGFEVHTAASGRE-MDKVLQRGDIGLVVLDYMMPGEDGLS 72 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G V L + + I G GA+ +L KPF+ L +R + + Sbjct: 73 ICKRLNQKG-GPPVIMLSAKGEEIDRIVGLELGADDYLAKPFHPRELLARIRAVMRRGDG 131 Query: 124 KDENQ 128 + + + Sbjct: 132 RGQGE 136 >gi|167750125|ref|ZP_02422252.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702] gi|167656868|gb|EDS00998.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702] gi|291556575|emb|CBL33692.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 244 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 11/139 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59 M +L+ + +R G+ V + ++ +A + L + ++D M G+ Sbjct: 1 MKRILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGM 60 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +RQ + L + I GA+ ++ KPF+ L + + Sbjct: 61 DGSELCRWLRQKSDTMG--IIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAV 118 Query: 118 PQMQKS------KDENQFL 130 + +DE + L Sbjct: 119 YRRVSLSVARPPEDEGRTL 137 >gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM 16795] gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM 16795] Length = 231 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + + + G+ VF+A EA + E + +++D M + Sbjct: 1 MYNILVVDDDKEIVESIEIYLRNEGYKVFKAYDGLEALDILTNEE-IHLILMDIMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + + + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIKATIKIRQE-KNIPIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLRR 118 >gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum SCRI1043] gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163] gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Dickeya dadantii 3937] gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium atrosepticum SCRI1043] gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Dickeya dadantii 3937] Length = 239 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|330504532|ref|YP_004381401.1| two component transcription regulator protein [Pseudomonas mendocina NK-01] gi|328918818|gb|AEB59649.1| two component transcription regulator protein [Pseudomonas mendocina NK-01] Length = 240 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 6/131 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ +D G+ A+ E R+ E E L + +V+D + G Sbjct: 7 ILIVDDDPEIRQLLSTYLSDAGYQTCVASQGVEMRKRLE-EQLIDLVVLDLMLPGEDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +++ V L I G GA+ +L KPF+ L ++ + + Sbjct: 66 LCRELRVR---SNIPVIMLTARGTLVDRIVGLEMGADDYLPKPFDPRELLARIKVVLRRT 122 Query: 122 KSKDENQFLDA 132 +S + LD Sbjct: 123 QSFPDRARLDE 133 >gi|298374088|ref|ZP_06984046.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] gi|298268456|gb|EFI10111.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] Length = 1359 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL+VD + R+ + + + V A +A + +E LP+ ++ D M + Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1169 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + G AGA+ ++ KPFN E L +R L +M Sbjct: 1170 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1229 Query: 121 QKSKDE 126 +K + Sbjct: 1230 KKKMQK 1235 >gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 241 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ + ++ + + G+ V E ++ + +++D + G+ Sbjct: 3 QRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQD-FDLILLDLMLPGMNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + G V L + E+++ G ++GA+ ++ KPF L + + + Sbjct: 62 FEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRS 121 Query: 122 KSKDENQ 128 K+E + Sbjct: 122 TGKEERE 128 >gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC 35236] gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC 35236] Length = 239 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] Length = 228 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +RK+ + V EA + EA + ++ +++D M + Sbjct: 8 MK-ILVVDDESRMRKLVHDFLARNNYDVIEAANGEEALDIFYEDKDIALIILDVMMPKMD 66 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R+ V + L + + + G G + ++ KPF+ + L + + Sbjct: 67 GWEVCAEIRRNSK---VPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAII 123 Query: 119 QMQKSKD 125 + SKD Sbjct: 124 RRVYSKD 130 >gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 221 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++ + + + G++V EAT A E +E + +++D + + Sbjct: 3 KKILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMF-REGNFDLIILDVMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + E + G + ++ KPF+ L + + + Sbjct: 62 FVVCEIIRKESS---VPIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVLR 118 Query: 120 MQKSKDEN 127 +EN Sbjct: 119 RANGLEEN 126 >gi|330950940|gb|EGH51200.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 709 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S A +++ P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGEMALAMVKQQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + ++G AGA +L KP + L +R L ++ Sbjct: 66 EVATQLKAEKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|325274980|ref|ZP_08140980.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099887|gb|EGB97733.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 227 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119 Query: 121 QK 122 + Sbjct: 120 AQ 121 >gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 235 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + G+ V++A + E EK + +++D M G+ Sbjct: 6 SILVVDDEKEIADLVEIYLVSDGYKVYKANNAEEGLGVLEKN-QIHLVLLDIMMPGMDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 65 QMCKKIRE---TNNIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQLRR 121 Query: 121 QKSKDEN 127 + N Sbjct: 122 YTQLNPN 128 >gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 225 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELF-AEHTIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|144897465|emb|CAM74329.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain [Magnetospirillum gryphiswaldense MSR-1] Length = 382 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + KV L D + V A +A E P+ +++D M + Sbjct: 9 ILVVDDTPDNLKVMSGLLKDL-YRVKIANGGEKALAIAVSETQPDLILLDIMMPDMDGHE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ V +L + + E G GA ++ KP + + + +++ Sbjct: 68 VCRRLKSDERTRDIPVIFLTAKSEVEDEEIGLSLGAVDYITKPISPPIVMARVAAHLKLK 127 Query: 122 K----SKDENQFLDA 132 +D+ +L+A Sbjct: 128 AGADFLRDKAAYLEA 142 >gi|26987637|ref|NP_743062.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|148546183|ref|YP_001266285.1| two component transcriptional regulator [Pseudomonas putida F1] gi|167035477|ref|YP_001670708.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|170720155|ref|YP_001747843.1| two component transcriptional regulator [Pseudomonas putida W619] gi|24982318|gb|AAN66526.1|AE016281_7 DNA-binding response regulator ColR [Pseudomonas putida KT2440] gi|13892068|gb|AAK39631.1| ColR [Pseudomonas putida] gi|108936753|emb|CAK47552.1| ColR protein [Pseudomonas putida] gi|148510241|gb|ABQ77101.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166861965|gb|ABZ00373.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169758158|gb|ACA71474.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] gi|313497270|gb|ADR58636.1| ColR [Pseudomonas putida BIRD-1] Length = 227 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119 Query: 121 QK 122 + Sbjct: 120 AQ 121 >gi|317968088|ref|ZP_07969478.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 256 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R++ GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDGDMRELVAGHLEHSGFDVQRAEDGIKG-QALALQYTPDLVLLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + V L + ++G +GA+ +L KPF+ E L ++ L + Sbjct: 64 LCQRLRRDERTSRIPVLMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRR 122 >gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 4 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 62 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 63 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 119 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 120 LRRSEEPAPEQL 131 >gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2] gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2] gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7] Length = 236 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + + V A + EA +K N L++D M + Sbjct: 5 RILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQY-NLLILDLMMPKVDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R T++ + L + + G GA+ ++ KPF+ + ++ L + Sbjct: 64 EVCRRLRNK---TNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRR 120 >gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 227 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + GF V A A K+ P+ +++D M G+ F Sbjct: 8 RILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLM-KQFQPHVVILDVMMPGMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + +V V L + + + G GA+ +++KPF+ E L + + Q Sbjct: 67 EVC-RMLKKTENVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARIRNQ 124 >gi|114769510|ref|ZP_01447136.1| Response regulator [alpha proteobacterium HTCC2255] gi|114550427|gb|EAU53308.1| Response regulator [alpha proteobacterium HTCC2255] Length = 195 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 10/130 (7%) Query: 1 MDS-------LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVID 53 M + +L+V+ ++ N G+ V +A + KE + +++D Sbjct: 1 MKTYSSNKGLILIVEDEPSQMELLSFNLNAEGYDVLKAEDGEKGL-LLFKENNIDLVLLD 59 Query: 54 ESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 + LE +R+ +D + L + E + G GA+ +++KP++ + L Sbjct: 60 WMLPNISGLEVCRQMRRSKDSSDCHLIMLTARGEEEDKVRGLDMGADDYIVKPYSIKELL 119 Query: 112 FAMRELPQMQ 121 +R +++ Sbjct: 120 ARVRSGIRIR 129 >gi|56694950|ref|YP_165295.1| response regulator [Ruegeria pomeroyi DSS-3] gi|56676687|gb|AAV93353.1| response regulator [Ruegeria pomeroyi DSS-3] Length = 445 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S + R++ +GF V EA S EA E C + +P+ ++ D M G+ Sbjct: 41 RRVLVVDDSRLQRRILSSSLKKWGFEVIEAESGEEAMEICARA-MPDLVLSDWVMPGMSG 99 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM----R 115 F RQ+ + L + + ++ G AGA+ FL+KP + + LR + R Sbjct: 100 VDFCEAFRQLNSDRYCYFILLTSKSEKNEVAQGLDAGADDFLIKPVSSDELRARISAGDR 159 Query: 116 ELPQMQKSKDENQFLD 131 + ++ +N+ ++ Sbjct: 160 VIGMQRELSAKNEVIE 175 >gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W] gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W] gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 237 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A A + + + +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SIVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LIRR 120 >gi|318040594|ref|ZP_07972550.1| two component transcriptional regulator [Synechococcus sp. CB0101] Length = 256 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R++ GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDSDMRELVAGHLEHSGFDVQRAEDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ T + + L + ++G +GA+ +L KPF+ E L ++ L + Sbjct: 64 LCQRLRRDERTTGIPILMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRR 122 >gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V + +A E + +V+D + + Sbjct: 1 MTCVLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGG-IDLIVLDLGLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L VD + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 274 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 4/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M + V+ +R++ + F + EK +P+ +++D + G Sbjct: 47 MPCIYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEK-KIPDLVLLDIMLPGES 105 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R D+ V L ++ G GA+ ++ KPF L +R + Sbjct: 106 GIEILKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVL 165 Query: 119 QM-QKSKDENQFL 130 + + + ++ L Sbjct: 166 RRSHRVEKPSEML 178 >gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 242 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + F G+ V A+ E ++ P+ +V+D + G+ Sbjct: 10 TRVLVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKR-YAPDVIVLDVMLPGIDG 68 Query: 62 FIAHVRQMPLGTD-VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V + L D ++ G GA+ ++ KPF+ L ++ L + Sbjct: 69 LEVCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRR 128 Query: 121 QKSKDENQFLDAI 133 + L A+ Sbjct: 129 HERVS---RLAAV 138 >gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032] gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus ATCC 35316] gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis z3032] gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus ATCC 35316] gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 239 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V A + E + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDE 126 +E Sbjct: 118 EPEE 121 >gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 227 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ +R+ G V A + + P +++D + G+ Sbjct: 1 MPRVLLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALM-ASFRPELVLLDLMLPGIN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L D ++ G AGA+ +++KP E + ++ + Sbjct: 60 GVQVCRRIRES---SQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti] gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti] Length = 246 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ F + G+ V A E RE +K+ + + +++D + G Sbjct: 11 ILVVDDDSRIRQMLSRYFEEEGYRVSLAGDGQEMRECLDKQPV-DVILLDLMLPGEDGLT 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + +DV + L D + G GA+ ++ KPF+ + +R + + ++ Sbjct: 70 LA-RDIRARSDVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVLRRRQP 128 Query: 124 KD 125 + Sbjct: 129 RR 130 >gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 220 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL++ + + + G+ V A E + V+D + + Sbjct: 2 RLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSET-FDLAVLDLGLPRMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G+++ V L E IAG AGA+ +L+KPF+ L+ +R L + Sbjct: 61 QVLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120 Query: 123 SKDE 126 + + Sbjct: 121 GRAQ 124 >gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379] gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379] Length = 223 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + V EA +F + ++ D M V Sbjct: 1 MK-ILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDY-DLIITDIMMPNVD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + V L + E I G +GA+ +++KPF + L +R L + Sbjct: 59 GYEFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRR 118 >gi|229159665|ref|ZP_04287676.1| Two-component response regulator [Bacillus cereus R309803] gi|228623816|gb|EEK80631.1| Two-component response regulator [Bacillus cereus R309803] Length = 223 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +A S EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] Length = 236 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L+V+ +R + N+ G+ VFEA + E E +E + ++D M + Sbjct: 1 MQHNILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVLNRED-IHLAIVDIMMPVM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R D+ V +L + + I G GA+ ++ KPF L + + Sbjct: 60 DGITMTMRLRETY-DIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQIR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes] gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes] gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes] gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes] gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes] gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes] Length = 233 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + + + GF V A E E P+ +V+D + + Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 + +V + L + + I G GA+ ++ KPF+ + ++ + + + K Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 125 DE 126 E Sbjct: 121 AE 122 >gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1] gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1] Length = 228 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + ++ + + G+ V + EA E +K P+ +++D M + Sbjct: 7 KILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKK-YKPHLIILDVMMPEMDGI 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + +L + +AG AGA+ ++ KP + L ++ L + Sbjct: 66 EACERIREESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALLRR 125 Query: 121 QKSKDEN 127 KS DEN Sbjct: 126 LKS-DEN 131 >gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 226 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 6/119 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ F A + K P+ +++D + G+ Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAF-KSAAPDLVLLDLMLPGMDGI 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A +R+ V + L + D ++ G +GA+ +++KPFN + L +R + Sbjct: 63 EICARIREESG---VPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLR 118 >gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 240 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD +R++ G+ + E +P+ +++D M G Sbjct: 5 QHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNE-LRALLDRDVPDLIILDVMMPGEDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 H+R ++ V +L + +I G G + +L KPFN L ++ L + Sbjct: 64 LSLCRHIRSR---SNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLR 120 Query: 120 MQKSKDE 126 E Sbjct: 121 RATPASE 127 >gi|323482946|ref|ZP_08088344.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323691625|ref|ZP_08105888.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323403726|gb|EGA96026.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323504351|gb|EGB20150.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 235 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 7/125 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ +R+ R L + + EA E + + +++D M G+ Sbjct: 5 NILIIEDDEDIREGIRILLESEDYQITEAADGWEGLRLLSDDT--DLVILDIMMPGISGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V V +L + + G AG + +L KPF+ L ++ + Sbjct: 63 KTCEEIRK---TSFVPVLFLTAKAQESDKLIGLMAGGDDYLTKPFSYAELLGRVKAQLRR 119 Query: 121 QKSKD 125 Sbjct: 120 YHIYR 124 >gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V A + E E E + +++D + + Sbjct: 3 KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ + ++ + ++AG GA+ +++KPF E L +R + Q Sbjct: 62 FEVT-RRLQQEKNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQ 120 Query: 122 KSKD 125 + Sbjct: 121 DIEA 124 >gi|118476273|ref|YP_893424.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415498|gb|ABK83917.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 227 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 5 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 63 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 64 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 120 Query: 119 QMQK 122 + K Sbjct: 121 RRTK 124 >gi|313632439|gb|EFR99462.1| response regulator SaeR [Listeria seeligeri FSL N1-067] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD++LLVD + V R GF V A + A + + E + + LV+D M + Sbjct: 1 MDTILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHV-DLLVVDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + L D YL ++ + G GA+ ++ KPF+ L ++ + + Sbjct: 60 GHTLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRR 119 Query: 121 QKSKDENQFLD 131 K E + L Sbjct: 120 TKRSSEPETLK 130 >gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1424 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + + E + +++D M + Sbjct: 1304 RTVLVVDDDARNLFALSGVLELHGFRVLHADNGRKGIEMLLAHPDISVVLMDVMMPEMDG 1363 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R MP D+ + + + +GAN ++ KP + L +R Sbjct: 1364 YAATAEIRAMPQYADLPIIAVTAKAMPGDQEKSLASGANDYVTKPVDTGDLIARVRRWL 1422 Score = 43.3 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 23/131 (17%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDF-------------GFMVFEATSVCEAREFCEKELLPN 48 LL+++ R + + G + A EA + Sbjct: 1143 RRLLVIEERP--RGLLTLVAERAVADLAYDSDDPHGGIDIITAVGAQEAASTLAADPCHC 1200 Query: 49 YLV-IDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGA----NSFLLK 103 ++ + + +F+ +R V V G RA A FL Sbjct: 1201 VVLELGMRHDEGADFLEAMRGDSALDSVPVLIHTGHRVDLVQEQGLRALAGDRPLDFLS- 1259 Query: 104 PFNRETLRFAM 114 + + LR + Sbjct: 1260 --SLDDLRERI 1268 >gi|163855203|ref|YP_001629501.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163258931|emb|CAP41230.1| Probable transcriptional regulator [Bordetella petrii] Length = 233 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ N G+ A + P+ LV+D + G Sbjct: 6 TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDAND-LAARIARYAPDLLVLDRMLPGGDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R G D+ V L + I G AGA+ +L KPF+ L + + + + Sbjct: 65 ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124 Query: 122 K 122 + Sbjct: 125 R 125 >gi|187925552|ref|YP_001897194.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716746|gb|ACD17970.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 242 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +VR++ GF V + A + ++ P +V+D M + Sbjct: 3 QSILVVDDDPVVRELVSGYLQGRGFKVDTLQNGL-ALQRRLQDERPALIVLDIMMPELDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V L D + G GA+ +L KPF L +R + + + Sbjct: 62 ISALRALRVAGDDIPVILLTARSDPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 >gi|89954507|gb|ABD83655.1| response regulator protein-like [Rickettsia honei] Length = 450 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GCEVCKTIKTNPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P+ ++I ++E + Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSGE-LDII-NEYTPDLVIISSTLEN-DD 208 Query: 62 FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + V + + E ++ G G N + + P L +R Sbjct: 209 PLRISGILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268 Query: 119 QMQKSKDENQ 128 + ++ +D + Sbjct: 269 RRKQYQDNLR 278 >gi|254974102|ref|ZP_05270574.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091501|ref|ZP_05320979.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313229|ref|ZP_05354812.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255515919|ref|ZP_05383595.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255649013|ref|ZP_05395915.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260682204|ref|YP_003213489.1| two-component response regulator [Clostridium difficile CD196] gi|260685803|ref|YP_003216936.1| two-component response regulator [Clostridium difficile R20291] gi|306519129|ref|ZP_07405476.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260208367|emb|CBA60866.1| two-component response regulator [Clostridium difficile CD196] gi|260211819|emb|CBE02210.1| two-component response regulator [Clostridium difficile R20291] Length = 224 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+VD + + + F G+ V+ A S ++ + K P+ +++D +M Sbjct: 3 NKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDSLKKISKN--PDIILLDINMPEIDG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + +L ++ I G RAGA+ +++KPF+ + L + + Sbjct: 61 IEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117 Query: 120 MQKSKD 125 ++ K Sbjct: 118 REQRKS 123 >gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 226 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LL++ + + G+ V A + + + + P+ L++D + + Sbjct: 5 ILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLA-RSIQPDLLILDWMLPTLSGVD 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R G + L + + ++G +GA+ ++ KPF+ E L ++ + Sbjct: 64 ICLRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRVNP 123 Query: 124 KDENQF 129 ++ ++ Sbjct: 124 EEPDRL 129 >gi|148255684|ref|YP_001240269.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407857|gb|ABQ36363.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains [Bradyrhizobium sp. BTAi1] Length = 1695 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + G V AT+ EA + + + +++D M + Sbjct: 1575 KTVLLVDDDARNIFALSSVLERRGMKVLTATTGAEAIDLVQSTPAISIVLMDIMMPQMDG 1634 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +RQ P + + L + AGA+ +L KP N E L A+R Sbjct: 1635 YQTIGVIRQNPAFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIRMWLH 1694 Query: 120 M 120 Sbjct: 1695 R 1695 Score = 89.5 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 8/131 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ +V L D GF + AT EA + K+ P + +D + +L Sbjct: 1307 TTLLIVEDDPHYARVLIDLARDKGFKILVATRGAEALDLA-KQYQPAAISLDVFLPDMLG 1365 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ ++ PL + V + E GA SF+ KP E + A+ ++ Sbjct: 1366 WTVLSQLKHNPLTRHIPVQIIT---LDEDRQHALARGAFSFVNKPTTTEGVSAALSQI-- 1420 Query: 120 MQKSKDENQFL 130 + ++ + L Sbjct: 1421 KEYAQPRRKRL 1431 Score = 73.7 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 5/93 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+V+ + + R L + + A + A E + +V+D + + Sbjct: 1429 KRLLIVEDNAAEQLSIRQLLDHDDIEILAADTGAGALEALRGTPC-DCVVLDLRLPDMSG 1487 Query: 62 F--IAHVRQMPLGTDVFVYYLLME--VDFEKMI 90 F + +R + + V E Sbjct: 1488 FDVLDQLRSDETLSGIPVVVFTGRELSAEEDAE 1520 >gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD H + ++ + G+ A+ EA +++D M + Sbjct: 1 MK-ILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTNPDIGLIILDIMMPDMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ V + L + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-TEVLKEVRKDNPVPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRR 118 Query: 121 QKS 123 ++ Sbjct: 119 AQN 121 >gi|328954298|ref|YP_004371632.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] gi|328454622|gb|AEB10451.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] Length = 228 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD + ++ R+ G+ V + EA + P +++D + G Sbjct: 1 MAKEHILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTA-HSIHPELILLDLMLPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 LE ++Q P + V + L + + ++ G GA ++ KPF+ L Sbjct: 60 VDGLEVCRKLKQDPKTSHVPIIMLSAKGEEADIVTGLELGAADYVTKPFSPRVLI 114 >gi|325954800|ref|YP_004238460.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] gi|323437418|gb|ADX67882.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] Length = 225 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 5/130 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +LLVD + + + GF V AT+ E + K P+ +++D M Sbjct: 1 MKHYKILLVDDEPDILEFVTYNLEKEGFEVETATNGLEGIKKA-KVFKPHLILMDVMMPQ 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R++ D + +L + +A AGAN +++KP + L ++ Sbjct: 60 MDGVEACGELRKLDAFKDTLIVFLSARGEDFSQLAAYDAGANDYIVKPIKPKILVSKLKA 119 Query: 117 LPQMQKSKDE 126 L ++++ +E Sbjct: 120 LLKIKQQDEE 129 >gi|302870116|ref|YP_003838753.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503607|ref|YP_004082494.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302572975|gb|ADL49177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410226|gb|ADU08343.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 222 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIA 64 V+ ++ GF V A + A ++ + +++D + + Sbjct: 2 VEDEESFSDALSYMLRKEGFEVSVAATGPAALTEFDRTGA-DIVLLDLMLPEMSGTEVCR 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 +RQ + V + + + G GA+ ++ KP++ L +R + + Q ++ Sbjct: 61 QLRQR---SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSAE 117 Query: 125 D 125 Sbjct: 118 S 118 >gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 55/136 (40%), Gaps = 10/136 (7%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + + + GF A ++ P+ +++D + Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRA-ARFVRQEAPDLVLLDIMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G +E +R + + + L V+ + G GA+ ++ KPF+ + ++ Sbjct: 60 GKDGMEVCKELRS---FSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVK 116 Query: 116 ELPQMQKS-KDENQFL 130 + + + ++E++ + Sbjct: 117 AVLRRSNTPQEESKRI 132 >gi|117928482|ref|YP_873033.1| response regulator receiver modulated diguanylate cyclase [Acidothermus cellulolyticus 11B] gi|117648945|gb|ABK53047.1| response regulator receiver modulated diguanylate cyclase [Acidothermus cellulolyticus 11B] Length = 304 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 3/118 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+VD +R+ G+ V A A + LP+ ++++ + G +E Sbjct: 2 LVVDDDPAMRQFLETNLRLDGYDVLTAADGPMAVAIVATQ-LPDLVLLEVGLPGIDGIEL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R+ + V + + G +AGA+ ++ KPF+ L +R + Sbjct: 61 TRRWREDSRTATLPVIMVTARSSTADRVLGLQAGADDYVTKPFDVAELLARVRSTMRR 118 >gi|148265760|ref|YP_001232466.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399260|gb|ABQ27893.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 454 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R+V + + G+ V A E P +V D M G+ F Sbjct: 4 KILIIDDDTSLRRVLEYNLQEEGYEVVTAADGEAGLALF-AECSPALVVTDLKMPGISGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V + + I + GA ++ KPFNR+ L+ +++ ++Q Sbjct: 63 QVLATIKERSPATLVIVITAFGAIDTAIEAMKLGAYDYITKPFNRDQLKLVVKKALELQG 122 Query: 123 SKDENQFLDA 132 +EN+ L Sbjct: 123 LSEENRLLKE 132 >gi|330828750|ref|YP_004391702.1| sensory box sensor histidine kinase/response regulator [Aeromonas veronii B565] gi|328803886|gb|AEB49085.1| Sensory box sensor histidine kinase/response regulator [Aeromonas veronii B565] Length = 1131 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD I + RHL G+ + ++ +A +E + + +++D M + Sbjct: 724 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAEEPV-DLILLDVMMPTLSGFD 782 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + V L + + G AGAN +L+KPF +E L ++ L + + Sbjct: 783 VCRRLRQQHPKDMLPVLLLTALNQPKDIEEGFGAGANDYLVKPFCKEELFARVKALLEAK 842 Query: 122 KSKD---ENQFLD 131 + EN+ L Sbjct: 843 AGRASLVENRLLK 855 >gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + V + +A + +K + ++D + + F Sbjct: 2 NILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTY-DLAILDVMLPDMDGF 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + L + I G GA+ ++ KPF L ++ + Sbjct: 61 TICKTIRQKHTW---PIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRR 117 Query: 121 QKSKDENQFLDAI 133 K + Q + Sbjct: 118 YKRYNVQQKAQEL 130 >gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CMC 3f] gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CMC 3f] Length = 248 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ V + + + G+ A + + ++ D + + Sbjct: 21 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 79 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + L + G AGA+ +++KPF+ L ++ L + Sbjct: 80 GFELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 139 >gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146] gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 243 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++ ++ D G+ V A E+ + L++D + GV Sbjct: 10 KRILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGW-DALILDLMLPGVDG 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + G GA+ +L KPF+ L ++ L + Q Sbjct: 69 LDICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQ 128 Query: 122 KSKDENQFLD 131 ++ N L+ Sbjct: 129 EAMGRNLMLE 138 >gi|237711967|ref|ZP_04542448.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454662|gb|EEO60383.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1383 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLV+ + + + L + + + +A + EA E K+ + + +V D M + Sbjct: 1133 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEV-DLIVSDVMMPEMDGM 1190 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E + G +GA+ ++ KP L + L + Sbjct: 1191 ELCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1250 Query: 121 QK 122 +K Sbjct: 1251 RK 1252 >gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] Length = 240 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 1 MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M +LL++ + K+ + + VF+A E E E E + +++D Sbjct: 1 MKEMNKIKILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESED-IDLVLLDLM 59 Query: 56 MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + ++++ ++V V + +V + ++ G + GA+ ++ KPF+ + L ++ Sbjct: 60 IPKISG-EDLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIK 118 Query: 116 ELPQMQK 122 + + + Sbjct: 119 TVLRRIE 125 >gi|187777750|ref|ZP_02994223.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC 15579] gi|187774678|gb|EDU38480.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC 15579] Length = 217 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R++ G+ V EA+ A + E + +++D + + Sbjct: 1 MKKVLVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIE-NTYFDIILLDIMLPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G + V ++ + D + G + GA+ ++ KPF L + + + Sbjct: 60 GFS--IISKIKGKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRR 117 Query: 121 QKSKDE 126 +E Sbjct: 118 CGKIEE 123 >gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 228 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF A E+ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRSRSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|256827452|ref|YP_003151411.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583595|gb|ACU94729.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 243 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEG--VL 60 +L D +R+V + G+ V A EA + + + + +++D M Sbjct: 12 ILFADDDADIREVVSIMLRAEGYYVDLAGDGLEAMRYLDNPDSNYDLVILDIVMPQATGY 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + H+RQ + V V +L E + G G N +L+KPF+ ++ + + Sbjct: 72 DVCKHLRQ---TSAVPVLFLTARGQDEDKVRGFAFGGNDYLVKPFSIAEFIARVKAMLRR 128 >gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 230 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD +R + VF+A++ EA + E+E +++D M Sbjct: 1 MTKYQVLVVDDEEEIRDAIEIYLKNESMTVFKASNGQEALDVLERED-IQLILMDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + A + ++ + L + + I G GA+ ++ KPFN L ++ Sbjct: 60 MDGMTATFQIRQK-KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 232 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 11 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 123 SKDENQFL 130 S Q + Sbjct: 129 SLTTQQTI 136 >gi|29349208|ref|NP_812711.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341116|gb|AAO78905.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1333 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + VR+ R LF + V EA + E KE LP+ ++ D M Sbjct: 1084 KSLLIIEDNEDVREYIRSLFISR-YAVSEACNGEEGVRIA-KEQLPDLIISDVMMPVKDG 1141 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R + + L + ++ G +GA+ +++KPFN E L+ + L Sbjct: 1142 FTCCREIRMQQETAHIPILILTARAEDADILQGCNSGADDYMMKPFNPEILKTKVDNLIL 1201 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1202 QRERLKR 1208 >gi|186685580|ref|YP_001868776.1| response regulator receiver modulated translation initiation factor IF-2 [Nostoc punctiforme PCC 73102] gi|186468032|gb|ACC83833.1| response regulator receiver modulated translation initiation factor IF-2 [Nostoc punctiforme PCC 73102] Length = 522 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L VD + + + G+ + A A KE P+ +++D M + Sbjct: 258 RILAVDDVADNLILIQTVLESEGYQIDLAADGTTALSLV-KESPPDLIILDVKMPEMDGY 316 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + ++ G GAN F+ KP + + L +R L ++ Sbjct: 317 EVTRRIRNNHNLPYIPILLISAY-FEASVVQGLDIGANDFIRKPIDVDELLARVRSLLRL 375 Query: 121 QKSKDENQFLD 131 +K ++ ++ Sbjct: 376 KKMIGKSDKIE 386 >gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] Length = 227 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ +R + GF V EA S E K P +++D + G+ Sbjct: 1 MSKILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALK-YNPQVVILDVMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L + I G +G + +L KPFN L ++ L + Sbjct: 60 GFEVCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRR 119 >gi|325299930|ref|YP_004259847.1| two component transcriptional regulator, AraC family [Bacteroides salanitronis DSM 18170] gi|324319483|gb|ADY37374.1| two component transcriptional regulator, AraC family [Bacteroides salanitronis DSM 18170] Length = 915 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + VR R L + V EA++ E + K +P+ ++ D M + Sbjct: 668 TVLVIDDNQDVRDYVRLLLERE-YRVLEASNGQEGLQQAMK-YVPDAIICDVMMPVMDGM 725 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E+ + G GA+S++LKPF+ + L+ +R L Sbjct: 726 ECCRRLKSEVQTSHIPVMMLTAYTMDEQKVQGYECGADSYILKPFSAKLLQVRLRNLIDN 785 Query: 121 QKSKD 125 ++ Sbjct: 786 RRRLQ 790 >gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] Length = 226 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + + + + V T +A E +K P+ +++D + G+ Sbjct: 1 MSRILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDK-FKPSLVILDLMLPGMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++R + + + L ++D + G GA+ ++ KPF L + Sbjct: 60 GYEICQNIRIK---STIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQL 116 Query: 119 QMQK 122 + + Sbjct: 117 RRSQ 120 >gi|218778777|ref|YP_002430095.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] gi|218760161|gb|ACL02627.1| Two-component, sigma54 specific, transcriptional regulator, Fis family [Desulfatibacillum alkenivorans AK-01] Length = 452 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + D GF V A + EA + K + P+ +++D M G+ Sbjct: 4 SILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSK-ISPDLMLLDIWMPGMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V V + E + + GA F+ KP + E + + ++ Sbjct: 63 ETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFRR 122 Query: 123 SKDENQFL 130 ++EN +L Sbjct: 123 LEEENLYL 130 >gi|119493837|ref|ZP_01624404.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119452429|gb|EAW33618.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 374 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ VR++ + F V A + E E LP+ ++ D M + Sbjct: 1 MKRILVIEDESDVREIILDILEAEEFSVIGAENGKEGVRLAL-EHLPDLVICDVMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + + +L + E + G GA+ +L KPF+R+ L A+ Sbjct: 60 GYDVLKILREEKTTSTIPFVFLTAKATRENIRQGMNLGADDYLTKPFSRKDLLGAISS-- 117 Query: 119 QMQKSKDENQFLDA 132 ++QK + A Sbjct: 118 RIQKKVAIEDRIQA 131 >gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202] gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202] gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL103PA1] Length = 226 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ R+ + GF V A + + E + + +++D M G Sbjct: 1 MTRVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGA-DIVLLDLMMPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ +V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRQRG---NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVT 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|3377515|gb|AAC28085.1| response regulator [Myxococcus xanthus] Length = 509 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R L + VFEA + EA + L+ D ME + Sbjct: 12 RLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQL-ASGSIDLLLTDLKMEPMDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + V + E + R GA ++ KPF LR+ + + + Sbjct: 71 TLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALERAR 130 Query: 123 SKD 125 + Sbjct: 131 LQR 133 >gi|330969228|gb|EGH69294.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 705 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S A +++ P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L D ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family [Planctomyces brasiliensis DSM 5305] Length = 228 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 S+L+++ + + GF V AT + + LP+ +V+D + Sbjct: 4 QSILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQAS-LPDLIVLDLMLPVTDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R P + + L + + I G GA+ ++ KPF + L ++ L + Sbjct: 63 LEVCRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKALLR 122 Query: 120 MQKSKDENQ 128 +K +Q Sbjct: 123 RPSAKSNSQ 131 >gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 224 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ + +R + + GF V EA + A + + P+ ++D M + F Sbjct: 5 ILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQ-APDMAILDIMMPQLNGFE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + +D+ + L + I G GA+ ++ KPFN + ++ + Sbjct: 64 LT-RALRKFSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRR 119 >gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++ D + + + G+ V A +A + +E LP+ +++D M + Sbjct: 1 MK-IMVADDDRDMVDMLSYWLKGHGYEVIRAFDGEQAIKRW-RESLPDLVILDIQMPKLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F RQM T+ V L + + G GA+ +L KPF+ L ++ + + Sbjct: 59 GFEVC-RQMRNETNSMVLILTAHDREDDEVRGLELGADDYLRKPFSPRQLLARIKAVMRR 117 >gi|312197895|ref|YP_004017956.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229231|gb|ADP82086.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 248 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 55/127 (43%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +++V+ V V F V E ++ EA + P+ +V+D + + F Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G+DV V +L + + + G AGA+ +L KPF+ E L +R + + + Sbjct: 87 VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGV 146 Query: 124 KDENQFL 130 E L Sbjct: 147 LTEASAL 153 >gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes] Length = 233 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + + + GF V A E E P+ +V+D + + Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEK-PDLIVLDLMLPEMDGIEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 + +V + L + + I G GA+ ++ KPF+ + ++ + + + K Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 125 DE 126 E Sbjct: 121 AE 122 >gi|78223656|ref|YP_385403.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78194911|gb|ABB32678.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 461 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+V + + G+ V A S E E + P +V D M G+ F Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFE-DGAPTLVVTDLKMPGMGGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 D V + E + +AGA F+ KPFNRE L+ +R+ MQ Sbjct: 69 QLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQG 128 Query: 123 SKDEN 127 EN Sbjct: 129 LSREN 133 >gi|291531882|emb|CBK97467.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum 70/3] Length = 244 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 11/139 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59 M +L+ + +R G+ V + ++ +A + L + ++D M G+ Sbjct: 1 MKRILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGM 60 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +RQ + L + I GA+ ++ KPF+ L + + Sbjct: 61 DGSELCRWLRQKSDTMG--IIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAV 118 Query: 118 PQMQKS------KDENQFL 130 + +DE + L Sbjct: 119 YRRVSLSIARPPEDEGRTL 137 >gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALAVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +K+ + Sbjct: 119 SRKASKK 125 >gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra magnipapillata] Length = 566 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 3/113 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLV+ I +K+ L +G V A + A + K + +++D M + Sbjct: 312 ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPY-DLILMDMMMPVMDGLE 370 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 H+R G + + + AG + ++ KP E L+ + Sbjct: 371 ATRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKI 423 >gi|196230354|ref|ZP_03129216.1| response regulator receiver modulated serine phosphatase [Chthoniobacter flavus Ellin428] gi|196225284|gb|EDY19792.1| response regulator receiver modulated serine phosphatase [Chthoniobacter flavus Ellin428] Length = 396 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 5/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL D + R++ GF V +A E E LP+ LV+D M + Sbjct: 19 RVLLADDEAVSRRLLSESLQRSGFEVRQAADGEETLRLATDE-LPDLLVLDFEMPQLDGA 77 Query: 62 -FIAHVRQ--MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++ V L + I +AGAN F+ KP +R+ L + Sbjct: 78 QVCHLLRASDREDLRNLPVIMLTAHAGEVEEIGCLQAGANDFVTKPVSRDVLAARIHTQL 137 Query: 119 QMQKSKDENQF 129 +++ DE + Sbjct: 138 RLRSMADELRQ 148 >gi|163797104|ref|ZP_02191059.1| Response regulator [alpha proteobacterium BAL199] gi|159177620|gb|EDP62173.1| Response regulator [alpha proteobacterium BAL199] Length = 246 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + + R+ GF V +A EA E P+ +++D + +E Sbjct: 19 ILIVEDEAPIVTLLRYNLEREGFRVADAGDGEEAL-LVAAERKPDLILLDWMLPLLSGIE 77 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 +R++P +V + L + I G +GA+ ++ KPF+ L Sbjct: 78 VCRRLRRVPDTKNVPIIMLTARGEEGDRIRGLNSGADDYVTKPFSPSELI 127 >gi|116251496|ref|YP_767334.1| response regulator PleD [Rhizobium leguminosarum bv. viciae 3841] gi|115256144|emb|CAK07225.1| putative two-component response regulator with GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 457 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A A CE+ + +++D M G+ F Sbjct: 4 RILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERN-QVDLILLDIMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KTLSDELRIRA 133 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 43/127 (33%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61 +LLVD ++ V + A E + ++++ + + Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEA-AESAFDLVIVNANFDDYDPLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + + + E ++ G N ++++P + L + + Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275 Query: 122 KSKDENQ 128 + D + Sbjct: 276 RYNDRLR 282 >gi|77460719|ref|YP_350226.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384722|gb|ABA76235.1| putative two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 227 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G ++GA+ +L+KPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLVKPFALSELAARVEAVMRR 119 Query: 121 QK 122 + Sbjct: 120 TQ 121 >gi|332093887|gb|EGI98941.1| acetoacetate metabolism regulatory protein atoC [Shigella boydii 5216-82] Length = 299 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] Length = 239 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 18 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATH-IELIITDVMMPEMD 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ V + + DFE G + GA+ ++ KP + + + L + Sbjct: 77 GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 136 Query: 121 QK 122 K Sbjct: 137 SK 138 >gi|296156476|ref|ZP_06839314.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295893075|gb|EFG72855.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 246 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + + ++ P+ +V+D M G Sbjct: 7 VLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQ-MRAALEQGAPDLIVLDLMMPGEDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRELRA-GKFRSVPVVMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18] gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 228 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + L GF + +A ++E + +++D + G+ Sbjct: 2 MSKILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGA-DLVLLDVMLPGMS 60 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R++ V + L + + G GA+ ++ KP++ L +R + Sbjct: 61 GMEVCRKLREVSS---VPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVL 117 Query: 119 QMQKSK 124 + + ++ Sbjct: 118 RRRSAE 123 >gi|256838638|ref|ZP_05544148.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] gi|256739557|gb|EEU52881.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] Length = 1364 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL+VD + R+ + + + V A +A + +E LP+ ++ D M + Sbjct: 1117 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1174 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + G AGA+ ++ KPFN E L +R L +M Sbjct: 1175 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1234 Query: 121 QKSKDE 126 +K + Sbjct: 1235 KKKMQK 1240 >gi|119716293|ref|YP_923258.1| two component transcriptional regulator [Nocardioides sp. JS614] gi|119536954|gb|ABL81571.1| two component transcriptional regulator, winged helix family [Nocardioides sp. JS614] Length = 228 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 47/118 (39%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + V + G+ V A A E + + ++D + G+ Sbjct: 2 RILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDGV 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R LG + + L D ++G AGA+ +L KPF+ + L +R L + Sbjct: 62 TVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRR 119 >gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + + G+ VF A + EA +K+ P+ +++D M Sbjct: 1 MKKKDIKILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKH-PHLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R P + + +L + +AG AGA+ + KP + L + Sbjct: 60 PEMDGIEACEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKV 119 Query: 115 RELPQMQK 122 + L + K Sbjct: 120 KALLRRLK 127 >gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 1499 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R R++ + G+ + EA + +A FC ++ +P+ +++D M + F Sbjct: 926 RVLIVDDDRAMRMALRNVLEEGGYRIEEAVNGEQALAFCRRQ-MPDLVLMDAVMPLLDGF 984 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R MP V + D + AGA ++ KP + LR + L Sbjct: 985 KACTQIRDMPGSRHTPVLIITALDDEHSIEQAFSAGATDYIPKPLHFGVLRQRVARLLDA 1044 Query: 121 QKSKDENQFLD 131 +++ L Sbjct: 1045 SRAEKHVHQLA 1055 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 4/115 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + + ++V + FG V A + EA + ++ + +++D M + Sbjct: 664 ILVVEDNRVNQQVAVGMLKRFGCHVEVAANGQEALDLVARKSY-DLVLMDCHMPRMDGYE 722 Query: 62 FIAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +R + G V + + V G N +L KP LR ++ Sbjct: 723 ATRRIRSLEAGKVQVPIIAMTANVREGDSDKCLSVGMNDYLPKPLRLNLLRDKLQ 777 Score = 67.1 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58 LL+VD S + R+ F+ +G A + +A + + + +IDE+M G Sbjct: 519 RLLIVDDSTVSRRFLEQTFSFWGMYHGSAENGQQALKMLRSAAIQGRAYDLALIDENMPG 578 Query: 59 V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + + + P + V + + + G +++ KP + L A+ Sbjct: 579 MEGVDLVHRIAESPQISSVKIILM-GRQHQPTVDVSHLPGVVNYIAKPVQQSPLYNAI 635 >gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF + +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAF-REAKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQK 122 + + Sbjct: 117 LRRSE 121 >gi|271969710|ref|YP_003343906.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512885|gb|ACZ91163.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ VR G V S EA + + P +++D + G+ Sbjct: 1 MAGILLVEDDPSVRTGLELALARQGHSVTSYASGEEALDHI-RSRRPEIVILDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+M + V L D ++ G AGA+ +++KP L +R + Sbjct: 60 GVEVCRRIRKMD---QLPVILLTARGDDLDVVVGLEAGADDYVVKPVEPRVLDARIRAVL 116 Query: 119 QMQKSKDENQ 128 + +S ++ Sbjct: 117 RRVESVASDR 126 >gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + + ++D + G+ Sbjct: 4 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGID 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L V E + G GA+ ++ KPF+ L ++ L + Sbjct: 63 GFQVCKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122 Query: 121 QKSKDE 126 + DE Sbjct: 123 IEVHDE 128 >gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + G+ V A A + + L P+ +V+D + G+ Sbjct: 17 TILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAAR-LRPDAVVLDVMLPGIDGL 75 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L D M+ G GA+ ++ KPF+ L ++ L + + Sbjct: 76 EVTRRIQADHP-TPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVE 134 Query: 123 SKDE 126 + Sbjct: 135 RAQQ 138 >gi|197122714|ref|YP_002134665.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] gi|196172563|gb|ACG73536.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] Length = 434 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LL+ D R+V + + V A+ EA + E P+ +++D M E Sbjct: 132 LLVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEH-PDLVLLDIGMPRLDGFE 189 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +RQ P D+ V ++ D + GA +L KPF+ LR + ++ Sbjct: 190 VLQRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRLV 249 Query: 122 KSKDENQFLD 131 +S+ + L Sbjct: 250 RSQIALRELA 259 >gi|42779728|ref|NP_976975.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217958170|ref|YP_002336714.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229137383|ref|ZP_04265995.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|229194895|ref|ZP_04321678.1| Two-component response regulator [Bacillus cereus m1293] gi|42735645|gb|AAS39583.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217066134|gb|ACJ80384.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228588599|gb|EEK46634.1| Two-component response regulator [Bacillus cereus m1293] gi|228646082|gb|EEL02304.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|324324624|gb|ADY19884.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIVLLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTIGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 230 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + GF V S + +E P+ +++D + + F Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEE-PDLIILDVMLPDMNGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + +L + D E I G G + ++ KPF+ + + ++ + + Sbjct: 65 GVTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124 Query: 123 SKDENQFLDA 132 DE + A Sbjct: 125 QDDEETIIRA 134 >gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] Length = 226 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + GF +A E + P+ +++D + G + Sbjct: 4 KILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRA-VQPDLVLLDLMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V + L + D ++ G +GA+ +++KPF + L +R + Sbjct: 63 DVCREIRAESR---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRR 119 >gi|297568710|ref|YP_003690054.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfurivibrio alkaliphilus AHT2] gi|296924625|gb|ADH85435.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfurivibrio alkaliphilus AHT2] Length = 530 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD R+V G++V EA + +A E + +++D M E Sbjct: 171 ILVVDDITANREVLSRRLRRLGYLVMEAENGRQALAMLETG-AFDLVLLDILMPELDGYE 229 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ L V V + D ++ AGA+ +L KPFN LR + + Sbjct: 230 VLRRIKANELIRHVPVLMISAVGDINSVVRCLEAGADDYLAKPFNSVLLRARVNASLVKK 289 Query: 122 KSKDEN 127 + D+ Sbjct: 290 RLYDQE 295 >gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ R GF V A + ++ + + +++D + G Sbjct: 1 MKKVLIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPV-DLILLDIMLPGED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R D+ + + + I G GA+ +++KPF+ L ++ Sbjct: 60 GFQVCREIRAE---KDIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHI 116 Query: 119 QMQKSKDENQ 128 + + Sbjct: 117 SRYEQLTNRE 126 >gi|212691672|ref|ZP_03299800.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855] gi|265753202|ref|ZP_06088771.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|212665861|gb|EEB26433.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855] gi|263236388|gb|EEZ21883.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1386 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLV+ + + + L + + + +A + EA E K+ + + +V D M + Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEV-DLIVSDVMMPEMDGM 1193 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E + G +GA+ ++ KP L + L + Sbjct: 1194 ELCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253 Query: 121 QK 122 +K Sbjct: 1254 RK 1255 >gi|209528218|ref|ZP_03276685.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209491340|gb|EDZ91728.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 372 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L VD S + + D G+ V+ A + E P +++D M G Sbjct: 14 NILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTIL-EKPPQLVLLDVMMPGIDGY 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + + ++ G AGA+ F+ KP + L +R L ++ Sbjct: 73 EVTRRIRNNPNLPFIPILLITAHDQ-SSVVEGLDAGADDFIRKPVEIDELLARVRSLLRL 131 Query: 121 QKSKDENQFLD 131 + S DE + Sbjct: 132 KHSIDEQAQMA 142 >gi|209884911|ref|YP_002288768.1| response regulator protein [Oligotropha carboxidovorans OM5] gi|209873107|gb|ACI92903.1| response regulator protein [Oligotropha carboxidovorans OM5] Length = 457 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A+ EA + C + + +++D M + F Sbjct: 4 RVLVVDDVPANVKLLEARLSAEYFDVVTASCGREALDICRRAEC-DIVLLDVMMPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRQLKSDPRTHFIPVVMVTALDSPADRVRGLDAGADDFLTKPVSDVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDELRMRA 133 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 4/112 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V +A + L++ ++E Sbjct: 157 RILLVEDRPSSYERLAPILAEE-HTVDVEPDPAQALFHAADGNY-DLLIVSLNLENYDGL 214 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + R + +V + L + +++ G G N +LL+P ++ L Sbjct: 215 RLCSQARSLERTRNVPLLALSNADNNVQLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes] gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes] gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes] gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes] gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes] gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes] gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes] gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes] gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes] gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes] gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes] gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes] gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes] gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes] gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes] gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes] gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes] gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes] gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes] gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes] Length = 233 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + + + GF V A E E P+ +V+D + + Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 + +V + L + + I G GA+ ++ KPF+ + ++ + + + K Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 125 DE 126 E Sbjct: 121 AE 122 >gi|153875815|ref|ZP_02003442.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152067721|gb|EDN66558.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 341 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + KV ++ + A S +A K +P+ +++D M + Sbjct: 4 KLVLVVDDNSENLKVLGNILKEHDLSPAFAQSGFKALTSINK-KIPDLILLDIMMPDMDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++Q + + +L +V+ + ++ G GA ++ KPFN L + Sbjct: 63 FEVCKRLKQDETTKGIPIIFLTAKVETDDVVTGLELGAVDYVTKPFNSRELMSRVNTHLA 122 Query: 120 MQKSKDENQ 128 ++ +K+E Q Sbjct: 123 LKTAKEELQ 131 >gi|94971086|ref|YP_593134.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] gi|94553136|gb|ABF43060.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] Length = 365 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + L D + V A A + + + P+ +++D M + Sbjct: 11 TVLVVDDTPDNLALVGGLLKDL-YRVKVANGGARALKIAQADNPPDLILLDIMMPEMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V +L + E G GA ++ KP + + ++ + Sbjct: 70 EVCRQLKADPHTRGIPVIFLTAKSQVEDEQMGFELGAVDYITKPLSPPIVMARVKTHLTL 129 Query: 121 QKS----KDENQFLD 131 + + +D+N FL+ Sbjct: 130 KAAADFLRDQNDFLE 144 >gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] Length = 228 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF A E+ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|148257460|ref|YP_001242045.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146409633|gb|ABQ38139.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 246 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ R + + V AT E + + L++D + G Sbjct: 8 ILVVEDDRETRTLIAKYLRNNSCNVTTATDGRE-MTRIMGDHRIDLLILDVMLPGEDGLT 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R++ + V + L + I G GA+ +L KPFN L + + + Q + Sbjct: 67 LC-RKLRAESQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQAA 125 >gi|238783966|ref|ZP_04627982.1| Transcriptional regulator in 2-component system [Yersinia bercovieri ATCC 43970] gi|238798834|ref|ZP_04642303.1| Transcriptional regulator in 2-component system [Yersinia mollaretii ATCC 43969] gi|238715074|gb|EEQ07070.1| Transcriptional regulator in 2-component system [Yersinia bercovieri ATCC 43970] gi|238717342|gb|EEQ09189.1| Transcriptional regulator in 2-component system [Yersinia mollaretii ATCC 43969] Length = 232 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L GF V A +A + + L I + + Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLDSSIDLLLLDIMMPRKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQFLD 131 ++ Q +D Sbjct: 118 SNWSEQQQNVD 128 >gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 223 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLVD + + H+ + G+ V A + + + + L++D + G Sbjct: 1 MK-ILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTY-DLLILDWMLPGKP 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L +R G V +L + + + G AGA+ +L+KPF L +R L Sbjct: 59 GLSICRELRSR--GKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALL 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 RRSPALE 123 >gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ V + + EA +++D M + Sbjct: 1 MK-ILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKLNMNPDIALMILDVMMPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + + V L + D I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QK 122 + Sbjct: 119 AE 120 >gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEEILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +K+ + Sbjct: 119 SRKASKK 125 >gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676] gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676] Length = 228 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTQQTI 132 >gi|229171369|ref|ZP_04298954.1| Two-component response regulator [Bacillus cereus MM3] gi|228612073|gb|EEK69310.1| Two-component response regulator [Bacillus cereus MM3] Length = 223 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +A S EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 233 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 15/143 (10%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+ D + ++ G+ A A + + + ++D M G Sbjct: 1 MKQVTILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHS-IDLAILDIMMPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 E +R+ ++ + +L + I+G GA+ ++ KPFN L + Sbjct: 60 LDGYEVTRLIREQ---HNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNA 116 Query: 117 LPQMQKSKDE-------NQFLDA 132 + K ++ N+ L+A Sbjct: 117 QLRRFKQLNQPAVAVASNKVLEA 139 >gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 230 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + GF V A A KE P+ +++D M G+ F Sbjct: 11 KILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMV-KEHQPHVVILDVMMPGMDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + +V L D E + G GA+ +++KPF+ E L + + Sbjct: 70 EVC-RMLKKIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNH 127 >gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20] gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A EA +++D M + Sbjct: 1 MK-ILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTNPDIGLMILDVMMPNMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + V + L + I G GA+ ++ KPFN + +R L + Sbjct: 60 GL-EVVKIVRKDSRVPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 + +++ Sbjct: 119 ADNAVQDK 126 >gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 225 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+V+ + +RK+ + V+EA + +A + N +++D + + Sbjct: 1 MDKILIVEDEYKIRKIITSYLE-EDYEVYEAENGEKALKLFADNN-FNLIILDLMIPKLS 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + + + L + E I G G + ++ KPF+ L+ ++ + Sbjct: 59 GEKVCQKIRQS---SQIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVL 115 Query: 119 QMQK 122 + Sbjct: 116 RRSN 119 >gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A ++ P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RDTKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V V L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 271 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A +E +P+ +V+D + + Sbjct: 24 RVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLA-RETVPDVIVLDIMLGDIDGL 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-- 120 R V V +L E +AG AG + ++ KPF+ E + +R L + Sbjct: 83 EVLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAG 142 Query: 121 -QKSKDENQF 129 ++DE + Sbjct: 143 ASAARDEARL 152 >gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 242 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 47/127 (37%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+++ + + L G+ V +++D + G+ Sbjct: 8 TNILIIEDEIAIAEGLVDLCELNGYRVKHVVDGESGLAEALSGQY-GLVLLDLMLPGMDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + + L + + +I G + GA+ ++ KPF+ L + + + Sbjct: 67 FTVCDKIREKDKSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRS 126 Query: 122 KSKDENQ 128 + EN+ Sbjct: 127 RQTMENE 133 >gi|189465197|ref|ZP_03013982.1| hypothetical protein BACINT_01542 [Bacteroides intestinalis DSM 17393] gi|189437471|gb|EDV06456.1| hypothetical protein BACINT_01542 [Bacteroides intestinalis DSM 17393] Length = 1357 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 60/126 (47%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D + + + + + +D + V A + E K+ P+ ++ D M + Sbjct: 1100 TILMIDDNKELLWMLKDILSDE-YSVLTAENGEEGLTIL-KQKTPDLIITDIMMPKIDGI 1157 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++ + + L + ++ I G +GA++++ KPFN + L+ +++L + Sbjct: 1158 TLIKQLKSNKHTMHIPLVILSAKNTTDEKIEGIESGADAYIPKPFNTQYLKSIIKQLLKK 1217 Query: 121 QKSKDE 126 Q+ + Sbjct: 1218 QEELKQ 1223 >gi|91788128|ref|YP_549080.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91697353|gb|ABE44182.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 243 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+V+ + ++ GF A+ + +LP+ +++D + Sbjct: 1 MKHQARILIVEDEPAIAELIAVNLRHGGFEPVVVQDSVAAQRELDA-VLPDAILLDWMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L H R+ + + L D +AG AGA+ ++ KPF+ + L +R Sbjct: 60 GQSGLALARHWRKQVRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 116 ELPQMQKSKDEN 127 + + + + N Sbjct: 120 AVLRRRAPESVN 131 >gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] Length = 1159 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + +G V A + E + + + +++D M + + Sbjct: 1025 TVLVVDDDVRNVFAITSILELYGLNVIHAENGRRGIEMLQSDPSIDLVLMDVMMPEMDGY 1084 Query: 63 IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R MP D+ + + + + AGA ++ KP + + L +R Sbjct: 1085 TTMTAIRTMPRIADLPIIAVTAKAMPDDRQKCLDAGATDYITKPVDVDELLACIRTRL 1142 >gi|332994661|gb|AEF04716.1| transcriptional regulatory protein CpxR [Alteromonas sp. SN2] Length = 246 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L++D + + + + G+ + + + +++D M + Sbjct: 18 QSILIIDDDNELTDMLATYLSSMGYQIQVSNDGQAGLAEATAGGHYDLILLDVMMPKMDG 77 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++++ + V L D I G GA+ +L KPFN L ++ + + Sbjct: 78 F-DVLKKLRVSHATPVLMLTARGDDYDRILGLELGADDYLPKPFNHRELVARIKAIFRR 135 >gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 227 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ +L G+ V A + + +K + +++D + G Sbjct: 1 MSRILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGA-DLVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +RQ V V L + + G GA+ ++ KP++ L ++ + Sbjct: 60 GIDVCRALRQRSS---VPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|290473269|ref|YP_003466135.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289172568|emb|CBJ79337.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 239 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + +++D + G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANAEQ-MDRLLTRESIQLIILDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ +L+KPFN L MR + + Q Sbjct: 65 SICRRLRSQHNPIPIIMVSAKGEEVDRIVGLEIGADDYLVKPFNPRELLARMRAVMRRQS 124 Query: 123 SK 124 + Sbjct: 125 HE 126 >gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] Length = 1356 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ + + +R+ + V EAT+ E E K+ LP+ ++ D M Sbjct: 1103 TVLVTEDNSELRQFIASELIGT-YRVIEATNGAEGIERAIKQ-LPDLIITDIMMPQTDGF 1160 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R P + + + L + E + G G++ +L KPF+ + L +R + Sbjct: 1161 ELVNTLRNNPATSHIPIIILSAKASPESKLKGLEIGSDDYLTKPFSSKELLLKVRNIIGR 1220 Query: 121 QK 122 ++ Sbjct: 1221 KE 1222 >gi|282898494|ref|ZP_06306484.1| Response regulator receiver (CheY) modulated Serine phosphatase [Raphidiopsis brookii D9] gi|281196660|gb|EFA71566.1| Response regulator receiver (CheY) modulated Serine phosphatase [Raphidiopsis brookii D9] Length = 377 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D ++ + + + + V ++ E P ++ D M Sbjct: 1 MFQILVIDDDSSIQILLKRILEKQHYQVITTSNGREGILQAVASP-PALIICDWMMPELS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ P + F L + G +GA+ F+ KP + L+ +R Sbjct: 60 GLEVCNFIKNHPNLSSTFFILLTSLDSVSDRVKGLDSGADDFISKPIEQNELQARVRAGL 119 Query: 119 QMQKSKDENQ 128 ++ + + Q Sbjct: 120 RLHQLNRDLQ 129 >gi|237725777|ref|ZP_04556258.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435585|gb|EEO45662.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1386 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLV+ + + + L + + + +A + EA E K+ + + +V D M + Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEV-DLIVSDVMMPEMDGM 1193 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E + G +GA+ ++ KP L + L + Sbjct: 1194 ELCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253 Query: 121 QK 122 +K Sbjct: 1254 RK 1255 >gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621] gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ V EA EA E+ + + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 IESR 120 >gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 231 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R N GF V A EA + + P+ +V+D + + Sbjct: 6 RVLVVDDEPQLLRALRINLNARGFAVTTAADGREALTAASR-MDPHVVVLDLGLPDMDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V V L D ++ AGA+ ++ KPF E +R + Sbjct: 65 TV-LEGLRGWTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRR 121 >gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 236 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ +R+ G++VF+A E + E + ++D M + Sbjct: 5 RILLVEDDKEIREGVEIFLKSQGYVVFQAADGLEGLKALEDNE-IDLAIVDVMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + D V +L + + I G GA+ ++ KPF L + + Sbjct: 64 TMTAKLREKY-DFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRRYH 122 >gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 229 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + F D G+ V A++ EA E+C+K+ + +++D M + Sbjct: 1 MQEKILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCDKD--IDIILLDIMMPNI 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++R + +L I G G + +++KPF+ + L+ ++ Sbjct: 59 DGFQVCQNIR---DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAH 115 Query: 118 PQMQKSKDENQF 129 + +K N Sbjct: 116 LRREKRVPLNNR 127 >gi|70732320|ref|YP_262076.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68346619|gb|AAY94225.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 236 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M LL+VD V + + F G+ V AT E+E +P+ +++D + G Sbjct: 1 MSRLLIVDDDIEVLALLKKFFVQQGYQVVVATDGASLWAALERE-VPDLIILDLMLPGDN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L +RQ V L + + G GA+ +L KPF+ L +R + Sbjct: 60 GLTLCQRLRQQHA---TPVIMLTAMGELSDRVVGLEMGADDYLSKPFDARELLARVRAVL 116 Query: 119 QMQKSKDENQFLDA 132 + EN+ + A Sbjct: 117 RRAG---ENRPVSA 127 >gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1334 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +++V+ + +R + LF+ + V+EA E E KE+ P+ ++ D M + + Sbjct: 1085 KIIIVEDNEELRGLLARLFSRI-YTVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1142 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L + E + G + GA+ ++ KPFN + L L Sbjct: 1143 EMCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNS 1202 Query: 121 QKSKDE 126 +K + Sbjct: 1203 RKLLQQ 1208 >gi|315921700|ref|ZP_07917940.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695575|gb|EFS32410.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1334 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ ++V ++ EA E P ++ D M + Sbjct: 1069 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1127 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1186 Query: 120 MQKSKD 125 + Sbjct: 1187 NRALLR 1192 >gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 236 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A+ E + +E P+ ++D M G+ F Sbjct: 10 KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIA-REFRPDAYILDVMMPGMDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D V YL + E I G GA+ ++ KPF+ E + +R + + Sbjct: 69 ELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126 >gi|238760430|ref|ZP_04621568.1| Transcriptional regulator in 2-component system [Yersinia aldovae ATCC 35236] gi|238701325|gb|EEP93904.1| Transcriptional regulator in 2-component system [Yersinia aldovae ATCC 35236] Length = 264 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L GF V A +A + + L I + + Sbjct: 33 MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLDSSIDLLLLDIMMPRKNGI 92 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 93 ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 149 Query: 121 QKSKDENQFLD 131 ++ Q +D Sbjct: 150 SNWSEQQQNVD 160 >gi|167761502|ref|ZP_02433629.1| hypothetical protein CLOSCI_03912 [Clostridium scindens ATCC 35704] gi|167661168|gb|EDS05298.1| hypothetical protein CLOSCI_03912 [Clostridium scindens ATCC 35704] Length = 232 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 10/128 (7%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLV+ +R V L + V +A + A E P+ +++D + Sbjct: 1 MKNNKYKILLVEDDGNIRTVIAALLETSDYQVIQAETGAMA-ETLFSSYQPDLIILDLGL 59 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + FI+ VR+ L V L + + + GAN ++ KPF+ L + Sbjct: 60 PDMDGMEFISFVRKESL---TPVIVLSARTNDDDKVRALDEGANDYVTKPFSSAELLARV 116 Query: 115 RELPQMQK 122 R + + Sbjct: 117 RTTLRNYR 124 >gi|154503148|ref|ZP_02040208.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149] gi|153796142|gb|EDN78562.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149] Length = 235 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + L G+ V +A EA E + +++D M + Sbjct: 5 TILVVDDNQEIVYSISELLKYEGYQVVKAYDGMEALNALEINN-IDLILLDVMMPRLNGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + V L + + ++G GA+ ++ KP+N L ++ + + Sbjct: 64 SALMKLRENYR-IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELIARIKAHLRRYR 122 Query: 123 S 123 + Sbjct: 123 A 123 >gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016] gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 227 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + G V A + EA KE + +V+D M + Sbjct: 3 KTVLMVDDEERMRLLIEAYLKREGLKVLLAENGEEALRKF-KENHVDLVVLDIMMPLMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R++ ++V + L + E + G + G +S++ KP + + L ++ L + Sbjct: 62 WTVCRELRKI---SNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLR 118 Query: 120 MQKSKDENQ 128 + NQ Sbjct: 119 RTYYDEINQ 127 >gi|115526645|ref|YP_783556.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520592|gb|ABJ08576.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 258 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ R + G V A E + + +++D + Sbjct: 16 SILVVEDDRETRSLIAKYLRANGCHVSAAADGRE-MSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR + V + L + I G GA+ ++ KPFN L + + + Sbjct: 75 SLCRKVRAR---SQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR 131 Query: 121 QKS 123 Q S Sbjct: 132 QAS 134 >gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51] gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ I+R+V + G+ EA +A E + + +++D + V Sbjct: 5 MNKVLVVEDEDILREVIVDYLVENGYQALEAADGEKALELFLANSV-DLVILDIVLPKVD 63 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L D + + G GA+ +L+KP++ L ++ Sbjct: 64 GWSVCRRIRRNSG---IPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFL 120 Query: 119 QMQKSKDENQFLDA 132 + E + A Sbjct: 121 EKTSDTVEEMQISA 134 >gi|317477648|ref|ZP_07936861.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316906188|gb|EFV27929.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 630 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R +F G+ + + EA +E P+ ++ D M + Sbjct: 462 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEAL-IIIREFNPDLVISDIMMPEMTG 519 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + M+ G + GA+++++KPF+ L+ ++ + Sbjct: 520 DELCSIIKGNLEMSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNILA 579 Query: 120 MQKSKD 125 + Sbjct: 580 NRALLR 585 >gi|313901323|ref|ZP_07834810.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312953931|gb|EFR35612.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 233 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R++ R L G+ V EA + EA E+ + ++D M + Sbjct: 5 RILVVDDDKEIREIIRVLLTQEGYDVSEARNGREALEYM--NDHIDLYILDIMMPYMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ ++ + +L + + G GA+ +L KPF+ L ++ + Sbjct: 63 ELCEQIRKH---SNAPILFLTAKGTQKDKAQGFFKGADDYLAKPFSYSELLVRVKAML 117 >gi|301307690|ref|ZP_07213647.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 20_3] gi|300834364|gb|EFK64977.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 20_3] Length = 1369 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL+VD + R+ + + + V A +A + +E LP+ ++ D M + Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1179 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + G AGA+ ++ KPFN E L +R L +M Sbjct: 1180 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1239 Query: 121 QKSKDE 126 +K + Sbjct: 1240 KKKMQK 1245 >gi|237722086|ref|ZP_04552567.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_2_4] gi|229448955|gb|EEO54746.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_2_4] Length = 1317 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R + + + F +++ EA EA + E P+ ++ D M + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I ++ + + + + + E I GA+++++KPF+ + + L Q Sbjct: 1128 LINKLKSELKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187 Query: 122 KSKD 125 Sbjct: 1188 MLLK 1191 >gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ V EA EA E+ + + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 IESR 120 >gi|327543489|gb|EGF29908.1| two-component system response regulator [Rhodopirellula baltica WH47] Length = 239 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+ + R L G+ V A + + + +D M Sbjct: 1 MTRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSA-SKMIESKNFDLVCLDVMMPMKS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R V ++ + D + G GA+ ++ KPF + ++ + Sbjct: 60 GFDVCRLLRAED--HRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVL 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|294788094|ref|ZP_06753338.1| phosphate regulon transcriptional regulatory protein PhoB [Simonsiella muelleri ATCC 29453] gi|294484387|gb|EFG32070.1| phosphate regulon transcriptional regulatory protein PhoB [Simonsiella muelleri ATCC 29453] Length = 232 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 5/134 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R GF V + SV E+ + + LP+ +++D + ++ Sbjct: 5 ILIVEDEAAIATLIRFNLEQAGFQVSVSGSVEES-KILINKQLPDLILLDWMLPQTSGVQ 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R ++ + L + G GA+ ++ KPF+ L + L + + Sbjct: 64 FVGQLRADSRTRELPIILLTARSEDVDKETGLNQGADDYITKPFSPRELVARVNALLRRR 123 Query: 122 KSKDENQ--FLDAI 133 + L ++ Sbjct: 124 APQKTENIIRLSSL 137 >gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 262 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD VR+V G+ V A +A E E P+ +V+D + + F Sbjct: 22 ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNES-PDLVVLDVMLPKLDGFA 80 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + +L + +AG GA+ +L KPF+ + L + + + Sbjct: 81 VCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 136 >gi|254163333|ref|YP_003046441.1| osmolarity response regulator [Escherichia coli B str. REL606] gi|253975234|gb|ACT40905.1| osmolarity response regulator [Escherichia coli B str. REL606] Length = 239 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 NILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|70732161|ref|YP_261917.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5] gi|68346460|gb|AAY94066.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5] Length = 227 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G ++GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVMRR 119 Query: 121 QK 122 + Sbjct: 120 SQ 121 >gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 231 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + F V T KE + +++D + + Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEI-KENKYDLIILDVMLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + DV V + + + I G GA+ ++ KPF+ L ++ Q Sbjct: 60 GF-DILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQN 118 Query: 121 QKSKD 125 + Sbjct: 119 YERLK 123 >gi|34580736|ref|ZP_00142216.1| regulatory components of sensory transduction system [Rickettsia sibirica 246] gi|28262121|gb|EAA25625.1| regulatory components of sensory transduction system [Rickettsia sibirica 246] Length = 450 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIELNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GCEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P+ ++I ++E + Sbjct: 152 KKILLINDDVVQAKNIKKMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208 Query: 62 FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + V + + E ++ G G N + + P L +R Sbjct: 209 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268 Query: 119 QMQKSKDENQ 128 + ++ +D + Sbjct: 269 RRKQYQDNLR 278 >gi|332883803|gb|EGK04083.1| hypothetical protein HMPREF9456_01111 [Dysgonomonas mossii DSM 22836] Length = 1396 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + + LF D + A E + LP+ ++ D M + Sbjct: 1148 LLIVDDNEDFCEFITSLFID-DYRTVIANDGEEGYSIVLDQ-LPDIILCDVMMPKMDGYE 1205 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F HV+ + + + L + E +G AGA+ ++ KPFN + L+ + ++ + Q Sbjct: 1206 FCRHVKGDIRTSHIPIILLTAKSSEESKYSGIEAGADDYISKPFNIDMLKLKIAKIIERQ 1265 Query: 122 K 122 K Sbjct: 1266 K 1266 >gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047] gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047] Length = 239 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ A S EA +++D M + Sbjct: 13 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSG- 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 I ++++ +D+ + + + I G GA+ ++ KPFN + +R L + + Sbjct: 72 IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 131 Query: 123 SKDENQ 128 + +++ Sbjct: 132 KQVKDE 137 >gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD1] gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD1] Length = 239 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V D + V + + E+ + L++D + GV Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGW-DALILDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + + +DA Sbjct: 124 DALARDSRIDA 134 >gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes] Length = 233 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + + + GF V A E E P+ +V+D + + Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 + +V + L + + I G GA+ ++ KPF+ + ++ + + + K Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 125 DE 126 E Sbjct: 121 AE 122 >gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26] gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932] gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55] gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34] gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79] gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196] gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291] gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58] gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196] gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291] Length = 232 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + ++V++ S +A C + ++D + GV F Sbjct: 4 KILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALN-CINLNEFDLAILDVMLPGVNGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + + I G GA+ ++ KPF L ++ + Sbjct: 63 SLCQKIREKYTY---PIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|119715795|ref|YP_922760.1| response regulator receiver [Nocardioides sp. JS614] gi|119536456|gb|ABL81073.1| response regulator receiver [Nocardioides sp. JS614] Length = 228 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + + + G+ V + A + + + ++D + G+ Sbjct: 2 RILVAEDDVRLAGLLEESLAEAGWQVEVVHNGRVAYDRLLSDTSFDVALLDWMLPGMDGV 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R LG + + L D I G AGA+ +L KPF+ + L +R L + Sbjct: 62 TVARRLRGLGLALPILMLTARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRALYRR 119 >gi|295090647|emb|CBK76754.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 247 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ +R+ G+ VF+A E EKE + ++D M + Sbjct: 12 ILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVLEKEEIL-LAIVDIMMPRMDGIT 70 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ D V +L + + I G GA+ ++ KPF L + + + Sbjct: 71 MVIKLREQY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYR 128 >gi|253571369|ref|ZP_04848776.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251839322|gb|EES67406.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1365 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + VR+ R LF ++V EA + E KE LP+ ++ D M Sbjct: 1117 KSLLIIEDNEDVREYIRSLFISR-YVVSEACNGEEGVRIA-KEQLPDLIISDVMMPVKDG 1174 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R + + L + ++ G +GA+ +++KPFN E L+ + L Sbjct: 1175 FACCREIRMQQETAHIPILILTARAEDADILQGCNSGADDYMMKPFNPEILKTKVDNLIL 1234 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1235 QRERLKR 1241 >gi|189466788|ref|ZP_03015573.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM 17393] gi|189435052|gb|EDV04037.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM 17393] Length = 1339 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R+ R+ +D + + + +A + KE +PN ++ D M + Sbjct: 1078 KILIVEDNDELREYLRNTLSD-DYTIQVCSDGKQALDIV-KEYMPNMIISDIMMPEMRGD 1135 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + + L + +I G + GA+ +++KPFN LR + + Sbjct: 1136 ELCHKLKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATIANILTN 1195 Query: 121 QKSKD 125 + Sbjct: 1196 RSLLR 1200 >gi|189466516|ref|ZP_03015301.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM 17393] gi|189434780|gb|EDV03765.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM 17393] Length = 229 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 57/133 (42%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTAHSAEEALKM--DIGSYSLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + ++ + + I Sbjct: 123 TQQGEQERAPEQI 135 >gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314] gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 240 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A+ E + +E P+ ++D M G+ F Sbjct: 14 KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIA-REFRPDAYILDVMMPGMDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D V YL + E I G GA+ ++ KPF+ E + +R + + Sbjct: 73 ELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 130 >gi|260063103|ref|YP_003196183.1| two-component system, transcriptional regulatory protein [Robiginitalea biformata HTCC2501] gi|88784672|gb|EAR15842.1| two-component system, transcriptional regulatory protein [Robiginitalea biformata HTCC2501] Length = 240 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + F V A + E E +KE + ++D M Sbjct: 6 KKILLVEDDPNFGIVLKDYLSMNDFDVTLAKNGMEGFEKFKKEP-FDVCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + +L + E ++ G +AGA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNDHIPIIFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLVKLKAILQRK 124 Query: 122 KS 123 S Sbjct: 125 AS 126 >gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 227 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|218705751|ref|YP_002413270.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UMN026] gi|293405687|ref|ZP_06649679.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1412] gi|298381369|ref|ZP_06990968.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1302] gi|300897713|ref|ZP_07116110.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|218432848|emb|CAR13742.1| fused response regulator of ato opeon, in two-component system with AtoS: response regulator ; sigma54 interaction protein [Escherichia coli UMN026] gi|291427895|gb|EFF00922.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1412] gi|298278811|gb|EFI20325.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli FVEC1302] gi|300358553|gb|EFJ74423.1| response regulator receiver domain protein [Escherichia coli MS 198-1] Length = 461 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|209518114|ref|ZP_03266943.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209501418|gb|EEA01445.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 246 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + + + P+ +V+D + G Sbjct: 7 VLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQ-MRAALENGAPDLIVLDLMLPGEDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V + L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRELRA-GKFRTVPILMLTARNEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii] Length = 226 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD + + GF V A + + + +++D + + Sbjct: 3 NNILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQ-AFDAIILDVMLPKLNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + V L D I G GA+ +L KP N L +R + + Sbjct: 62 F-EVLKAIREHLQTPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRT 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 QKIPTQR 127 >gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 224 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 58/129 (44%), Gaps = 2/129 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G++V A + + E+ + +++D M + + Sbjct: 2 RILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLA-NEMRYDLILLDVMMPEMDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++++ D V +L E + G GA+ +L+KPF+ L +R + + + Sbjct: 61 -SVMKKLGARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRRGQ 119 Query: 123 SKDENQFLD 131 + + + L+ Sbjct: 120 PQKQEERLE 128 >gi|91778395|ref|YP_553603.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691055|gb|ABE34253.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 361 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V A A + + + P+ +++D M G+ F Sbjct: 23 VLIVDDTPDNLALLSDTLQAAGYAVLVALDGQSALQRLAR-ITPDAVLLDALMPGLDGFE 81 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + V ++ D E ++ G R G ++ KP + + Q Sbjct: 82 TCRRIKADPRNRHLPVIFMTALTDSEHVVQGFRVGGIDYVTKPVKPSEVSARIAAHVQRS 141 Query: 122 KSKDE-NQFLD 131 + + + ++ L+ Sbjct: 142 RQQRQADRVLE 152 >gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis] Length = 369 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + + + G+ + +A S EA + + + +V+D M G+ Sbjct: 137 SILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 195 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D +++L ++G GA+ ++ KPFN L +R + Sbjct: 196 FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 252 Query: 120 MQKSKDE 126 E Sbjct: 253 RTYQSKE 259 >gi|154244330|ref|YP_001415288.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158415|gb|ABS65631.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 238 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLLV+ +R + G+ V A A + P+ +V+D + G Sbjct: 4 RTLLLVEDDREIRSLLADFLGREGYGVLAAEDGA-AMDRLLATTRPDLVVLDLMLPGEDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D I G GA+ +L+KPFN L +R + + Sbjct: 63 LSICRRLRARSG---LPILMLTAKADDVDRIVGLEMGADDYLVKPFNPRELLARIRAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 230 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + G V +A EA E E + +V+D M + Sbjct: 5 NVLVVDDEKEIRDAIEIYLKNEGITVLKAGDGIEALEML-NEHQVHLIVLDVMMPNLDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G + GA+ ++ KPFN L ++ + Sbjct: 64 SATYKIREK-KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120 >gi|319642790|ref|ZP_07997428.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317385534|gb|EFV66475.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1353 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ + E+ + EA E P+ ++ D M + Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA++++ KPF+ E LR L + Sbjct: 1149 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIRS 1208 Query: 120 MQKSKD 125 ++ ++ Sbjct: 1209 RERLRN 1214 >gi|265753017|ref|ZP_06088586.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] gi|263236203|gb|EEZ21698.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] Length = 1331 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ ++ + V A++ EA + E + +V D M + F Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVL-SEKTISLIVSDVMMPEMDGFE 1141 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L +V + I G GA+ ++ KPF+ E L + L Q Sbjct: 1142 LCHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQ 1201 Query: 122 KSKD 125 Sbjct: 1202 DKLR 1205 >gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14] gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14] Length = 228 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + + + GF V EA E + +++D M + Sbjct: 1 MAHILLIDDDTELTNLLKEVLSYEGFDVSEANDGQSGLAALNDE--IDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLRENW-TTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKD 125 + + Sbjct: 118 TQHQS 122 >gi|260173428|ref|ZP_05759840.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1290 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ ++V ++ EA E P ++ D M + Sbjct: 1025 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1082 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1083 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1142 Query: 120 MQKSKD 125 + Sbjct: 1143 NRALLR 1148 >gi|254881403|ref|ZP_05254113.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254834196|gb|EET14505.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1348 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ + E+ + EA E P+ ++ D M + Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA++++ KPF+ E LR L + Sbjct: 1149 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIRS 1208 Query: 120 MQKSKD 125 ++ ++ Sbjct: 1209 RERLRN 1214 >gi|237711589|ref|ZP_04542070.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] gi|229454284|gb|EEO60005.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] Length = 1331 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ ++ + V A++ EA + E + +V D M + F Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVL-SEKTISLIVSDVMMPEMDGFE 1141 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L +V + I G GA+ ++ KPF+ E L + L Q Sbjct: 1142 LCHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQ 1201 Query: 122 KSKD 125 Sbjct: 1202 DKLR 1205 >gi|237725951|ref|ZP_04556432.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. D4] gi|229435759|gb|EEO45836.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides dorei 5_1_36/D4] Length = 1331 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ ++ + V A++ EA + E + +V D M + F Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVL-SEKTISLIVSDVMMPEMDGFE 1141 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L +V + I G GA+ ++ KPF+ E L + L Q Sbjct: 1142 LCHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQ 1201 Query: 122 KSKD 125 Sbjct: 1202 DKLR 1205 >gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 232 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ A + + + + ++D + G+ Sbjct: 4 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTV-DVALLDVMLPGMD 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 119 QMQKSKDE 126 + + DE Sbjct: 121 RRIEVHDE 128 >gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 236 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L++VD +R++ GF VF A A + + P+ +V+D + + F Sbjct: 5 RLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLI-TDTTPDLVVLDVMLPDLDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V +L + D + + G G + ++ KPF+ E + +R + + Sbjct: 64 EVTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTN 123 Query: 123 SK 124 + Sbjct: 124 HQ 125 >gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697] gi|217985979|gb|EEC52318.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697] Length = 1334 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +++V+ + +R + LF+ + V+EA E E KE+ P+ ++ D M + + Sbjct: 1085 KIIIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1142 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L + E + G + GA+ ++ KPFN + L L Sbjct: 1143 EMCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNS 1202 Query: 121 QKSKDE 126 +K + Sbjct: 1203 RKLLQQ 1208 >gi|212695373|ref|ZP_03303501.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855] gi|212662102|gb|EEB22676.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855] Length = 1389 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ ++ + V A++ EA + E + +V D M + F Sbjct: 1142 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVL-SEKTISLIVSDVMMPEMDGFE 1199 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L +V + I G GA+ ++ KPF+ E L + L Q Sbjct: 1200 LCHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQ 1259 Query: 122 KSKD 125 Sbjct: 1260 DKLR 1263 >gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++LV+ + + L G+ V A EK+ + +++D + G Sbjct: 1 MTRIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVAAFEKDGT-DLILLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R V + L + ++ G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCREIRTRSA---VPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 242 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + + GF F +A E P+ +++D + G Sbjct: 19 MKARILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGK-PDLVLLDLMLPGI 77 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R +DV V L + D ++ G +G + ++ KPF L +R Sbjct: 78 DGIEVCRLIRAE---SDVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRAR 134 Query: 118 PQ 119 + Sbjct: 135 LR 136 >gi|149912907|ref|ZP_01901441.1| response regulator [Roseobacter sp. AzwK-3b] gi|149813313|gb|EDM73139.1| response regulator [Roseobacter sp. AzwK-3b] Length = 422 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 6/136 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S R++ + +GF V EA A C P+ ++ D M G+ Sbjct: 19 RRVLVVDDSPAQRRIVSAALSRWGFDVMEADDGAAAMAICTSSP-PDLVISDWVMPGMNG 77 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116 F R MP + L + E + G AGA+ FL KP N LR + Sbjct: 78 LDFCRMFRDMPRENYGYFILLTSKSGKEDIACGLDAGADDFLTKPVNSSELRARIAAGDR 137 Query: 117 LPQMQKSKDENQFLDA 132 + +M++ E L A Sbjct: 138 ILRMERELTEKNRLIA 153 >gi|30720162|gb|AAN87039.1| OmpR [Thiocapsa roseopersicina] Length = 238 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + GF+V A A + E + +++D + G Sbjct: 8 ILVVDDDSALRALLGDYLAGEGFLVAGAEDGV-AMDAWLAEHETDLVILDLMLPGEDGLT 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ D + L D I G GA+ ++ KPFN L +R + + + Sbjct: 67 LA-RRLRARADTPIIMLSARGDDIDRIVGLEVGADDYMPKPFNPRELLARIRAVLRRR 123 >gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 226 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLLVD + + G+ + S EA ++ + + +++D M + Sbjct: 1 MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHA-DLVLLDVMMPELD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + + ++ G + GA+ ++ KPF+ L + + Sbjct: 60 GWETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|84386370|ref|ZP_00989398.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01] gi|84378794|gb|EAP95649.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01] Length = 239 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQ 123 >gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 224 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ A +E PN +++D + + Sbjct: 6 VLIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKF-RETSPNLVILDLMLPVMDGLE 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++V + L + + G AGA+ +L+KPF+ E L +R + Sbjct: 65 VA-RRIRKTSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120 >gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 228 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D +R + G+ V +A EA E E+ + + +++D M + Sbjct: 5 TVLVTDDDQDIRDGIEIYLKNEGYRVLKAADGLEAIELLEQNEV-HCMILDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPF+ L ++ + Sbjct: 64 TATFKIRAE-RNIPIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLRR 120 >gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 246 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ + GF V + +KE + L+ID + G+ Sbjct: 16 KKILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESY-DLLIIDIMLPGLDG 74 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+M D+ V + + + I G GA+ ++ KPF+ L ++ + Sbjct: 75 L-EILRRMNEEKDIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHLENY 133 Query: 122 KSKD 125 + Sbjct: 134 ERLK 137 >gi|323498131|ref|ZP_08103135.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326] gi|323316842|gb|EGA69849.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326] Length = 231 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + + + GF V EA + E + +++D M + Sbjct: 1 MPHILLIDDDTELTSLLKEVLSFEGFDVSEANNGEEGLALLTDG--IDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLRENW-QTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QK 122 + Sbjct: 118 TQ 119 >gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTQQTI 127 >gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 59/132 (44%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ ++R++ + D G+ V EA +A +E + +++D + + Sbjct: 3 KTILIVEDQQVLREIMKEYLMDEGYEVLEAGDGSQALTLF-QEHEVHLIILDVMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R++ ++V + L D + + G GA+ +++KP + L + L + Sbjct: 62 WSVCRRIRKV---SNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLLE 118 Query: 120 MQKSKDENQFLD 131 ++ + L Sbjct: 119 NRQMHEPGDMLS 130 >gi|158334668|ref|YP_001515840.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158304909|gb|ABW26526.1| two-component sensor histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 546 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M + +L+VD + V + + + V A + A + +P+ +++D + Sbjct: 1 MKNSTANILIVDDNVDNLNVLAGMLAEQNYKVRRAINGSIALRAIKAS-IPDLILLDIVL 59 Query: 57 EGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + + ++Q P D+ V ++ D E + G ++ KPF + + Sbjct: 60 PDMTGYDICTQLKQHPSTQDIPVIFISSLNDTEDKVKAFAVGGVDYVSKPFEMAEVCARI 119 Query: 115 RELPQMQKSKDENQFLDA 132 R ++Q +K E + L+A Sbjct: 120 RNQLEIQFAKAEIESLNA 137 >gi|53804207|ref|YP_113897.1| response regulator [Methylococcus capsulatus str. Bath] gi|53757968|gb|AAU92259.1| response regulator [Methylococcus capsulatus str. Bath] Length = 391 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD I G+ V A EA E + +++ D +M + Sbjct: 2 RILLVDDDPIAVLAVAVYLRKLGYEVTSARDGREALERFRSQ-RFEFVISDWNMPHLNGE 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117 VR + L V+ L D + ++ G AGA+ FL+KP +RE LR +R + Sbjct: 61 ELCRQVRSLKLPHYVYFILLTGRDDKDSLLRGMEAGADDFLVKPVDREELRARIRAGERI 120 Query: 118 PQMQKSKDENQFL 130 ++++ D+ L Sbjct: 121 LRLEQQLDQRGRL 133 >gi|323139254|ref|ZP_08074308.1| adenylate/guanylate cyclase [Methylocystis sp. ATCC 49242] gi|322395475|gb|EFX98022.1| adenylate/guanylate cyclase [Methylocystis sp. ATCC 49242] Length = 539 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 57/134 (42%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + R + + G V A + A K+ + +++D M + F Sbjct: 195 RILVVDDNASNRDLLKRRLERQGHAVVLAENGSSALAIV-KQAQFDLVLLDLLMPDISGF 253 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ D+ V + + + ++ AGA +L KPF LR + + Sbjct: 254 DVLSILKSDLSLRDIPVIMISALNEIDTIVRCIEAGAEDYLAKPFEPVLLRARIGSSLEK 313 Query: 121 QKSKD-ENQFLDAI 133 ++ +D E + +A+ Sbjct: 314 KRLRDREREASEAL 327 >gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis C] gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis C] Length = 250 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 4 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 62 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 63 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 226 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + GF T A E E+E P+ +++D + G+ Sbjct: 3 QKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAERE-QPDLILLDLMLPGMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ V + L + D ++ G +GA+ ++ KPF + L +R + Sbjct: 62 IDICRAIRQDSA---VPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|51594428|ref|YP_068619.1| DNA-binding transcriptional regulator CpxR [Yersinia pseudotuberculosis IP 32953] gi|108809460|ref|YP_653376.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis Antiqua] gi|108813937|ref|YP_649704.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis Nepal516] gi|145601072|ref|YP_001165148.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis Pestoides F] gi|150260864|ref|ZP_01917592.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis CA88-4125] gi|153948260|ref|YP_001399085.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162420224|ref|YP_001604719.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis Angola] gi|165926059|ref|ZP_02221891.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Orientalis str. F1991016] gi|165936215|ref|ZP_02224784.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Orientalis str. IP275] gi|166011510|ref|ZP_02232408.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Antiqua str. E1979001] gi|166213694|ref|ZP_02239729.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398994|ref|ZP_02304518.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418962|ref|ZP_02310715.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426656|ref|ZP_02318409.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468392|ref|ZP_02333096.1| transcriptional regulatory protein CpxR [Yersinia pestis FV-1] gi|170026339|ref|YP_001722844.1| DNA-binding transcriptional regulator CpxR [Yersinia pseudotuberculosis YPIII] gi|186893415|ref|YP_001870527.1| DNA-binding transcriptional regulator CpxR [Yersinia pseudotuberculosis PB1/+] gi|218927293|ref|YP_002345168.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis CO92] gi|229836187|ref|ZP_04456355.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis Pestoides A] gi|229839923|ref|ZP_04460082.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842005|ref|ZP_04462160.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis biovar Orientalis str. India 195] gi|229904466|ref|ZP_04519577.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis Nepal516] gi|270488465|ref|ZP_06205539.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294502177|ref|YP_003566239.1| two component system response regulatory protein [Yersinia pestis Z176003] gi|27544276|dbj|BAC54911.1| transcription factor [Yersinia pseudotuberculosis] gi|51587710|emb|CAH19310.1| two component system response regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108777585|gb|ABG20104.1| two component system response regulatory protein [Yersinia pestis Nepal516] gi|108781373|gb|ABG15431.1| two component system response regulatory protein [Yersinia pestis Antiqua] gi|115345904|emb|CAL18763.1| two component system response regulatory protein [Yersinia pestis CO92] gi|145212768|gb|ABP42175.1| two component system response regulatory protein [Yersinia pestis Pestoides F] gi|149290272|gb|EDM40349.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis CA88-4125] gi|152959755|gb|ABS47216.1| transcriptional regulatory protein CpxR [Yersinia pseudotuberculosis IP 31758] gi|162353039|gb|ABX86987.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola] gi|165915829|gb|EDR34437.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Orientalis str. IP275] gi|165921919|gb|EDR39096.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Orientalis str. F1991016] gi|165989656|gb|EDR41957.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Antiqua str. E1979001] gi|166205096|gb|EDR49576.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Antiqua str. B42003004] gi|166962956|gb|EDR58977.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051498|gb|EDR62906.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054345|gb|EDR64162.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752873|gb|ACA70391.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186696441|gb|ACC87070.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229678584|gb|EEO74689.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis Nepal516] gi|229690315|gb|EEO82369.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis biovar Orientalis str. India 195] gi|229696289|gb|EEO86336.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706635|gb|EEO92641.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis Pestoides A] gi|262360256|gb|ACY56977.1| two component system response regulatory protein [Yersinia pestis D106004] gi|262364203|gb|ACY60760.1| two component system response regulatory protein [Yersinia pestis D182038] gi|270336969|gb|EFA47746.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294352636|gb|ADE62977.1| two component system response regulatory protein [Yersinia pestis Z176003] gi|320013426|gb|ADV96997.1| DNA-binding response regulator in two-component regulatory system with CpxA [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 232 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L GF V A +A + + L I + + Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSSIDLLLLDIMMPRKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SNWSEQQQ 125 >gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01] gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01] Length = 224 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ A +E+ PN +++D + + Sbjct: 6 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRF-REVNPNLVILDLMLPVMDGIE 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++V + L + E + G AGA+ +L+KPF+ E L +R + Sbjct: 65 VAKRIR-KTSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120 >gi|319902736|ref|YP_004162464.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] gi|319417767|gb|ADV44878.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] Length = 229 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVETANSAEEALKM--DIGNYDLLLLDIMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + + Q + I Sbjct: 123 TQQAEAEQIPEQI 135 >gi|315178837|gb|ADT85751.1| osmolarity response regulator [Vibrio furnissii NCTC 11218] Length = 240 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|302188802|ref|ZP_07265475.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 705 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S A +++ P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L D ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQIKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 240 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ +VD + ++ + + GF A E + P+ +++D + G+ Sbjct: 1 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + L + D ++AG AGA+ ++ KPF L +R Sbjct: 60 GTGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARF 116 Query: 119 QMQKSKDEN 127 ++ K E+ Sbjct: 117 RIAKPAAED 125 >gi|332974230|gb|EGK11163.1| DNA-binding response regulator [Kingella kingae ATCC 23330] Length = 231 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++ + GF V A+ V ARE ++ + L++D + Sbjct: 4 TRILVVEDEMPIQTLIAFSLQQAGFDVQCASHVQAARELIAQQRH-DLLLLDWMLPDGDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 IA +R P + + L + G GA+ +L KPF+ L + + Sbjct: 63 VSWIAELRAQPATAALPIILLTARSEDADKEHGFAQGADDYLTKPFSPRELIARIHARLR 122 Query: 120 MQ 121 + Sbjct: 123 HR 124 >gi|325295161|ref|YP_004281675.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065609|gb|ADY73616.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 217 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 7/126 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR--EFCEKELLPNYLVIDESMEG 58 M + +V+ + + + + + GF V ++ EA E E + +++D + G Sbjct: 1 MFRIAVVEDDISIGNLLKRILSKEGFYVKVYSTG-EALINELFEYGKEYDLIILDVMLPG 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R+ + V + L + + + G +GA+ ++ KPF + L +R Sbjct: 60 MNGVETCRFLRERKV--KVPILMLTALSEEDDKVIGLDSGADDYVTKPFGVKELLARIRA 117 Query: 117 LPQMQK 122 L + ++ Sbjct: 118 LLRRKE 123 >gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + + + G V A + E E ++ +P+ +V+D M Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE--MPDLIVLDIMMPDID 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + +L + I G G + +++KPF+ + L + Sbjct: 59 GYEVCRKIR---DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHL 115 Query: 119 QMQK 122 + +K Sbjct: 116 RREK 119 >gi|300727408|ref|ZP_07060817.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] gi|299775288|gb|EFI71887.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] Length = 1268 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ ++ +R + + V A + + E LP++++ D M + Sbjct: 1013 KLLIVEDNNDLRSFLTEIL-RVNYEVISAENGKIGLQRAVDE-LPDFIITDVMMPVMDGL 1070 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++Q + V L + E + G + G + ++ KPF+ L+ + + Sbjct: 1071 SMVHQIKQNKDICHIPVIVLSAKASLEDRLQGLQEGIDDYITKPFSATYLKRRIENIISQ 1130 Query: 121 QKSKDENQFLDAI 133 + + ++ +L+ I Sbjct: 1131 RHALQQS-YLEQI 1142 >gi|255024504|ref|ZP_05296490.1| two-component response phosphate regulator [Listeria monocytogenes FSL J1-208] Length = 169 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF V A E E P+ +V+D + + Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + L + + I G GA+ ++ KPF+ + ++ + + Sbjct: 60 GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119 Query: 121 QKSKDE 126 + K E Sbjct: 120 TEGKAE 125 >gi|220916290|ref|YP_002491594.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] gi|219954144|gb|ACL64528.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-1] Length = 481 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +R+ R + G+ V EA S + E + E + + V D + G+ Sbjct: 7 SILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPV-DLGVFDIRLPGMDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R L D+ V + D ++ + GA F KP +R+ + ++R + Sbjct: 66 TLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRD 125 Query: 123 SKDENQFLDA 132 + + Q L A Sbjct: 126 LEGKVQALSA 135 >gi|186470431|ref|YP_001861749.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196740|gb|ACC74703.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 2010 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L+VD + D G A + +A E + + +++D M + Sbjct: 1890 RKALIVDDDMRNIFALATVLEDHGMRHVWADNGRDAIRLVETDSEIDIVLMDIMMPEMDG 1949 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R++P+G + + + + AGA +L KP NRE L + Sbjct: 1950 LVTTSEIRKLPVGRTLPIIAVTAKAMKGDRERCIEAGAWDYLSKPVNREDLLAVLHAWLH 2009 Query: 120 M 120 Sbjct: 2010 R 2010 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 7/134 (5%) Query: 3 SLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L +V++ + GF A E + P+ + +D + + Sbjct: 1625 RVLMIVENDLAFAHFLLDAAREQGFKGLVTPLGAPALTLAE-QFKPDVITLDLFLPDMDG 1683 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ + V + E +AGA +FL KP + + Sbjct: 1684 WRVLGRLKNDMATRHIPVCVIST---DESRERALKAGAFAFLTKPIQAREILDDALSVLA 1740 Query: 120 MQKSKDENQFLDAI 133 + S L A+ Sbjct: 1741 VHASAAPRTLLVAL 1754 >gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 229 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 232 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D ++ G+ +A + EA E EK+ + + +++D M + Sbjct: 4 TVLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEALEAIEKQEV-HLILMDIMMPQLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ ++ + L + + IAG GA+ ++ KPFN L +R + Sbjct: 63 SATLKIRQE-KNIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRRYT 121 Query: 123 SKDENQF 129 Q Sbjct: 122 KLGAMQQ 128 >gi|123440486|ref|YP_001004480.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332159711|ref|YP_004296288.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087447|emb|CAL10228.1| two component system response regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318603811|emb|CBY25309.1| copper-sensing two-component system response regulator CpxR [Yersinia enterocolitica subsp. palearctica Y11] gi|325663941|gb|ADZ40585.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858935|emb|CBX69297.1| transcriptional regulatory protein cpxR [Yersinia enterocolitica W22703] Length = 232 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L GF V A +A + + L I + + Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDIMMPRKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 ETLKELRQH---HQTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQFLD 131 ++ Q +D Sbjct: 118 SNWSEQQQNVD 128 >gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 232 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + +D F V A + E + + + +++D M + F Sbjct: 11 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DVILLDVMMPEMDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 123 SKDENQFL 130 S Q + Sbjct: 129 SLTTKQTI 136 >gi|30260742|ref|NP_843119.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525860|ref|YP_017209.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183580|ref|YP_026832.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|170708227|ref|ZP_02898673.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|229603745|ref|YP_002865187.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|30254191|gb|AAP24605.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501008|gb|AAT29684.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177507|gb|AAT52883.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|170126883|gb|EDS95764.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|229268153|gb|ACQ49790.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|66044349|ref|YP_234190.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255056|gb|AAY36152.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 705 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S A +++ P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L D ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|15604107|ref|NP_220622.1| response regulator PleD [Rickettsia prowazekii str. Madrid E] gi|3860799|emb|CAA14699.1| unknown [Rickettsia prowazekii] gi|292571833|gb|ADE29748.1| Regulatory components of sensory transduction system [Rickettsia prowazekii Rp22] Length = 450 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALSILKKEK-IDTILLDVMMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GFEVCKMIKTDPGTTHIPVVMITALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 57.5 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 4/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V + E + E + ++I ++E Sbjct: 152 KKILLINDDVVQAKNIKQMLVKVTKHVKVINNSNE-LDII-NEYRSDLVIISSTLENEDP 209 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + + E ++ G G N + + P L +R + Sbjct: 210 LRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFIYPIEENELLARIRTQLR 269 Query: 120 MQKSKDENQ 128 ++ +D + Sbjct: 270 RKQYQDNLR 278 >gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 229 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60 +L+ D +R++ F V +A E K + + +ID M + Sbjct: 6 TKILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMD 65 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R +D V ++ + + + + G GA+ +++KPF+ + ++ + Sbjct: 66 GFALCREIRS---FSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVL 122 Query: 119 QMQKSKDENQFL 130 + + + Sbjct: 123 KRANPVQGEELI 134 >gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 800 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD H R + G V A + EK + +++D M + Sbjct: 680 KKVLIVDDDHRNRFALQSALGKQGITVISAEDGVACLDILEKNTTIDLVLMDIMMPHIDG 739 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F H+RQ + + L + +AGAN ++ KP N + L MR Sbjct: 740 FETMKHIRQSRKHIHLPIIALTAKAMNHDKQKCLQAGANDYVSKPVNLQQLFSVMRVWL 798 >gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] Length = 229 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|218438405|ref|YP_002376734.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171133|gb|ACK69866.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 361 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L VD + + + G+ V A + P+ +++D M G E Sbjct: 12 ILAVDDNPDNLFLIKLALEQEGYRVHLVEDGLTALAQIQYAP-PDLILLDVMMPGINGYE 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ P + + + + ++ G GA+ F+ KP + L+ +R L +++ Sbjct: 71 VTRRIRQNPNIPFIPILLITAY-EEPSLVQGLDVGADEFIRKPVQIDELQARVRSLLRLK 129 Query: 122 KSKDENQ 128 S D+ + Sbjct: 130 HSIDQRE 136 >gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 223 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++++ + + G++V A+ E EK + +++D + + Sbjct: 3 KKILVVEDDFDIQEIISEVLKNSGYIVEVASDGLSGIEMFEK-YKFDLIILDIMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +DV + L + + I G + ++ KPF+ L + + + Sbjct: 62 FVVCEIIRKK---SDVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLR 118 Query: 120 MQKS 123 + Sbjct: 119 RYSN 122 >gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 222 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + GF + A +A + + L++D ++ Sbjct: 1 MSRILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKAL-GSQFDLLILDLNLPHQD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G V + L D E +AG GA+ ++ KPF L +R + Sbjct: 60 GFQILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRH 119 Query: 121 QKSK--DENQFLDA 132 Q E + L A Sbjct: 120 QTLSPVKEERVLTA 133 >gi|33594128|ref|NP_881772.1| two component response regulator [Bordetella pertussis Tohama I] gi|33598090|ref|NP_885733.1| transcriptional regulatory protein OmpR [Bordetella parapertussis 12822] gi|33602983|ref|NP_890543.1| transcriptional regulatory protein OmpR [Bordetella bronchiseptica RB50] gi|33564202|emb|CAE43488.1| two component response regulator [Bordetella pertussis Tohama I] gi|33566648|emb|CAE38858.1| transcriptional regulatory protein OmpR [Bordetella parapertussis] gi|33568614|emb|CAE34372.1| transcriptional regulatory protein OmpR [Bordetella bronchiseptica RB50] gi|332383543|gb|AEE68390.1| two component response regulator [Bordetella pertussis CS] Length = 233 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ N G+ A + P+ LV+D + G Sbjct: 6 TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASD-LAARITRYAPDLLVLDRMLPGGDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R G D+ V L + I G AGA+ +L KPF+ L + + + + Sbjct: 65 ADACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124 Query: 122 K 122 + Sbjct: 125 R 125 >gi|86146553|ref|ZP_01064875.1| osmolarity response regulator [Vibrio sp. MED222] gi|218708219|ref|YP_002415840.1| osmolarity response regulator [Vibrio splendidus LGP32] gi|85835610|gb|EAQ53746.1| osmolarity response regulator [Vibrio sp. MED222] gi|218321238|emb|CAV17188.1| Transcriptional regulatory protein ompR [Vibrio splendidus LGP32] Length = 239 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQ 123 >gi|330836392|ref|YP_004411033.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] gi|329748295|gb|AEC01651.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] Length = 251 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ ++++ + G+ V +A +A E + PN +++D + Sbjct: 16 KVVLIVEDETDIQELISYHLKQEGYSVLQALDGRQALEQIKVGT-PNLVLLDLMLPELSG 74 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE + +R T + V + +I G GA+ ++ KPF+ + L ++ + + Sbjct: 75 LEVLKTIRYSWGMTALPVLIASARTEESDIIMGLEIGADDYITKPFSPKVLIARVKAILR 134 Query: 120 MQKSKD 125 + ++ Sbjct: 135 RTQEQE 140 >gi|296535607|ref|ZP_06897787.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957] gi|296264062|gb|EFH10507.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957] Length = 459 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD ++ N + V A+S EA E + +P+ +++D M G+ Sbjct: 4 RILVVDDIAANLRLLEARLNAEYYEVALASSGPEALSRAE-DWMPDIILLDVMMPGMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + VD + + G AGA+ FL KP + TL +R L ++ Sbjct: 63 EVCRRLKASTATAHIPVVMVTALVDASERVRGLEAGADDFLSKPVDHSTLFARLRALLRV 122 Query: 121 QKSKDENQFLDA 132 ++ D + Sbjct: 123 KQVLDAFRLRAE 134 Score = 48.3 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 1/111 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-VLE 61 S+LL ++ + G + + +A + + L+ G L Sbjct: 155 SILLATEDVNEAELLTGVLAVDGVTLRLTGTATQAWQALSEGAFDLALLSLSLDGGEGLR 214 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + +R D+ V + ++ G GAN +L+P + LR Sbjct: 215 LASRLRAQAATRDLPVLLIADADQHGLVLRGFELGANDHVLRPVDPNELRA 265 >gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] Length = 229 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + GF V A + +E + ++D + GV Sbjct: 1 MSKILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDY-DLFILDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR + + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFDICRQVRNV---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QM 120 Sbjct: 117 AR 118 >gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 231 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + ++ + G+ VF+AT+ +A KE + +++D M G+ Sbjct: 1 MFNVLIVDDEVEIIELMEVYLLNDGYKVFKATNGLDALNIINKEK-IHLVILDIMMPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + + + I G GA+ +++KPF+ L ++ + Sbjct: 60 GLQVCMKIRKEY-NIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118 Query: 121 QKSKDEN 127 +EN Sbjct: 119 YVYLNEN 125 >gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC BAA-613] gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC BAA-613] Length = 238 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ +R+ G+ VF+A E + E E + ++D M + Sbjct: 7 RILLVEDDKEIREGVEIFLKSQGYAVFQAADGVEGLKVLE-EREIDLAIVDVMMPRMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + D V +L + + I G GA+ ++ KPF L + + Sbjct: 66 TMTAKLREKY-DFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLRRYH 124 >gi|89055622|ref|YP_511073.1| response regulator receiver modulated diguanylate cyclase [Jannaschia sp. CCS1] gi|88865171|gb|ABD56048.1| response regulator receiver modulated diguanylate cyclase [Jannaschia sp. CCS1] Length = 464 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R V + + V +A + A + +E P+ +++D M + Sbjct: 4 RILVVDDVATNRIVMKVKLTAACYSVDQAENGAAALKAA-RETKPDLILLDVMMPDMSGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P D+ V + D + G AGA+ FL KP TL +R L ++ Sbjct: 63 DVCRALKADPETADIPVVLITALFDQAAKMDGLEAGADDFLTKPVEEVTLLARVRSLLRV 122 Query: 121 QKSKDENQFLD 131 S E + D Sbjct: 123 SDSVRELRARD 133 Score = 56.7 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 4/98 (4%) Query: 35 CEAREFCE-KELLPNYLVIDESMEGVLEFIAHV---RQMPLGTDVFVYYLLMEVDFEKMI 90 A P+ VI + E + + R P + +L E D E+ Sbjct: 188 ETALTQATGTGNDPDVFVISVDLAQRNEGLRLLSDLRSRPGTRHSAIVMILPEGDSERAA 247 Query: 91 AGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQ 128 GAN L PF+ + L + ++ D + Sbjct: 248 IALDLGANDVLHDPFDAQELAIRISAQLDRKRQSDRMR 285 >gi|319944548|ref|ZP_08018818.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC 51599] gi|319742184|gb|EFV94601.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC 51599] Length = 248 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + + G V A E E P+ +++D M G Sbjct: 17 VLVVDDDAEIRTLLAEYLSQNGIRVTVARDATE-MRQVFDEARPDIIILDLMMPGEDGLT 75 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ ++V V L D I G GA+ +L KPF+ L ++ + + + Sbjct: 76 VC-RELRSRSNVPVIMLTARADEVDRIIGIEMGADDYLGKPFSPRELLARIKGVLRRTR 133 >gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 239 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 7/129 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + + + + + GF V A S EA +KE + LV+D M+G+ Sbjct: 5 SILIVDDENAIVDMVKRVLDKEGFQNVMTAGSAEEAIPIVKKEK-IDLLVLDVMMDGMSG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F A +R+ +D +++L + ++G +GA+ ++ KPFN L +R + Sbjct: 64 FEACAAIRE---YSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLK 120 Query: 120 MQKSKDENQ 128 +++ + Sbjct: 121 RTYKQEDGR 129 >gi|284052122|ref|ZP_06382332.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291571292|dbj|BAI93564.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 378 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 7/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + + + G+ V + +A E P+ +++D M + Sbjct: 13 ILIVDDKPENLQFLFTMLTENGYDVRRVINGKQAINVALFEP-PDLILLDIMMPNLNGYD 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118 +++ D+ + +L D + + G G ++ KPF + + Sbjct: 72 VCKILKEKSETKDIPIIFLSALKDVSEKVKGFNVGGVDYISKPFELLEILARVENQLTIV 131 Query: 119 -QMQKSKDENQFLDAI 133 Q ++ ++N L+ + Sbjct: 132 RQKRQLAEQNARLEQL 147 >gi|284051060|ref|ZP_06381270.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] Length = 236 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + V A A + + P+ +++D ++ Sbjct: 4 QKILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDA-FNPDLVILDVNLPDTTG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F A ++M T VFV L I G GA+ ++ KPF L +R + + Q Sbjct: 63 F-ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQ 121 Query: 122 KSKDENQF 129 +S +E + Sbjct: 122 RSVEETEM 129 >gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 210 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + R G+ V A + A E + +P+ ++ D M + Sbjct: 5 KRLLLIDDDPNLILLVRDYLGFRGYDVLTAENGQRALGILE-QDIPDMIICDVMMPEMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ VRQ + V V +L + + G GA+ +++KPF E L + + Sbjct: 64 YTFVEQVRQNERTSWVPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 123 Query: 120 MQKSKDENQ 128 E+Q Sbjct: 124 QTSRWKEHQ 132 >gi|261250559|ref|ZP_05943134.1| two-component system response regulator OmpR [Vibrio orientalis CIP 102891] gi|260939128|gb|EEX95115.1| two-component system response regulator OmpR [Vibrio orientalis CIP 102891] Length = 239 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+V+ +R++ GF V + +A ++ P +V+D + Sbjct: 6 RLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQP-PGLIVLDVMLPDFDGF 64 Query: 61 EFIAHVRQMPLGT---DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E + +R V +L E I+G RAG + ++ KPFN E L +R + Sbjct: 65 EVVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124 Query: 118 PQMQKSKDENQFL 130 + + + L Sbjct: 125 LRRTSGRQTDGRL 137 >gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185] gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550] gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W] gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550] gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185] gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTQQTI 132 >gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1989 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD L V A + + + + +++D M G+ Sbjct: 1870 KKVLVVDDDVRNIFALTSLLERHRMQVIPAENGAAGIAYLQNTPDIDLVLMDVMMPGMDG 1929 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++P + + L + AGA+ ++ KP + E L +R Sbjct: 1930 YETMKTIRKIPQFHSLPIIALTAKAMKGDRDKCLDAGASDYITKPVDTEQLLSILRVWL 1988 Score = 65.6 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 42/115 (36%), Gaps = 6/115 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++++++ ++ + + GF A +K P +++D + G Sbjct: 1598 RTIVILEDDINFARLLLEVVREQGFKGLIAMRCSSGLAMIQKHH-PCAVILDICLPGDSG 1656 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ P + + ++ + G + GA + KP +E L + Sbjct: 1657 WTVLDRIKHDPYSRHIPAIIMSVKDE---RYRGQKLGAYRYYQKPMIKEKLTQII 1708 Score = 35.2 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 28/82 (34%), Gaps = 5/82 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGVL 60 +L LV + + R + + A ++ E + + +V+D + + Sbjct: 1720 KNLFLVSNDEGLLTDLRDIIGSSDVRIDTANTIAAGIERISNTQDKIDCVVLDAKLPAMD 1779 Query: 61 E---FIAHVRQMPLGTDVFVYY 79 F ++ + ++ + Sbjct: 1780 NLAVFEEQLQSL-KNRELPIVI 1800 >gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 59/130 (45%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V + + EA E E + +++D M + F Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEK-FDLILMDIMMPKIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ T++ + +L + + + I G +G + ++ KPF+ L M + + Sbjct: 63 -EAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVS 121 Query: 123 S--KDENQFL 130 + +EN+ L Sbjct: 122 TGVVEENEDL 131 >gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 238 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + D G V + E+ + LV+D + GV Sbjct: 5 RRILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGW-DALVLDLMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 + ++ L++ Sbjct: 124 DALAQSARLES 134 >gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 233 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++LLVD VR+ + G V A++ A E + ++P+ ++ D M Sbjct: 7 TILLVDDEPSVRESVQAYLEYSGNLTVKVASNATNAWEILQT-IIPDVIISDIMMPEVDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +F+ +R P + V +L I G AG +++L KPF+ E L + L + Sbjct: 66 YQFLEKLRDDPRFQSIPVVFLTARGMTSDRIKGYNAGCDAYLPKPFDPEELEAIVNNLLE 125 Query: 120 MQK 122 +K Sbjct: 126 RRK 128 >gi|186685534|ref|YP_001868730.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467986|gb|ACC83787.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 439 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L++D +V + G+ V E K P+ +++D M G+ Sbjct: 8 QTILIIDDHPTNIEVLYDALDQAGYKVLVEMDGWHGIETV-KSYPPDLILLDVMMPGIDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ ++ + ++ D + G GA ++ KPF +E + + + Sbjct: 67 FETCRQLKSQQTTCEIPIIFMTALNDTTDKVKGLGLGAVDYITKPFQQEEVLARIGIHLK 126 Query: 120 MQKSKDEN 127 ++++ E Sbjct: 127 LRRANLEL 134 >gi|332829883|gb|EGK02523.1| hypothetical protein HMPREF9455_01391 [Dysgonomonas gadei ATCC BAA-286] Length = 1409 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +RK + +D+ + V EA + EA + + ++++ D M + Sbjct: 1159 TILVVEDNMDMRKYICSILSDY-YKVAEAENGEEALKVLKA-TAIDFIISDLMMPVMDGL 1216 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E I + GA+ FL KPF+ E L + + ++ Sbjct: 1217 ELSQKVKSDMSTSHIPFLMLTAKTSIETQIGSYKMGADEFLTKPFDEELLLTRINNILEI 1276 Query: 121 QKSKDE 126 +K Sbjct: 1277 RKLYQR 1282 >gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + G+ V +++ EA E + +V+D + + Sbjct: 1 MTRVLLVEDDPAISEPLARALGREGYEVLASSTGREALTNVEGA---DLVVLDLGLPDMD 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V + L D M+ G AGA+ ++ KPF L +R L + Sbjct: 58 GLDVAREIRADGGRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117 Query: 121 QKSKDENQFLDA 132 ++ L A Sbjct: 118 HTAEPAESELRA 129 >gi|255691713|ref|ZP_05415388.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260622598|gb|EEX45469.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1337 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + +R L + + V + EA KE P ++ D M + Sbjct: 1065 MQRILIVEDNDELRSYLVSLLSPQ-YYVQACCNGREAL-VIVKEFWPELILSDVMMPEMQ 1122 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E A +++ + + V L D + ++ G GA+ +++KPF+ + L+ + L Sbjct: 1123 GDELCAAIKKDVETSHIPVLLLTALGDEKNILDGLTIGADEYIVKPFSVKLLKANIANLL 1182 Query: 119 QMQKSKDE 126 + + Sbjct: 1183 SNRALLRQ 1190 >gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 1240 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R R++ G+ + EA + +A EFC+++ +P+ +++D M + F Sbjct: 925 RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQ-MPDLVLMDAVMPVLDGF 983 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R +P V + D + + AGA ++ KP + LR + L Sbjct: 984 NACAQIRDLPDSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRKRVARLLDA 1043 Query: 121 QKSKDENQFLD 131 +++ + L Sbjct: 1044 SRAEKDIHQLA 1054 Score = 122 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + ++V + FG V ++ EA + + +++D M + Sbjct: 662 RRILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAI-ANKVYELVLMDCHMPQMDG 720 Query: 62 --FIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G V + + V AG N +L KP LR +R Sbjct: 721 YEATRRIRVREAGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWL 780 Score = 52.9 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58 LL+VD+S R+ FN +G + +A + + +++DE+M Sbjct: 519 RLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSAAVEGRAYDLVLVDENMLD 578 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + L V + + + I+ G +++ KP + +L + Sbjct: 579 LKGFNLAHKITEDSLIAPVKIILMGHQHHPASSISSLP-GVVNYVAKPVQQSSLYNVIVS 637 Query: 117 LPQMQKS 123 + ++ Sbjct: 638 AVKQNEA 644 >gi|229586486|ref|YP_002844987.1| response regulator PleD [Rickettsia africae ESF-5] gi|228021536|gb|ACP53244.1| Regulatory components of sensory transduction system [Rickettsia africae ESF-5] Length = 450 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GCEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P+ ++I ++E + Sbjct: 152 KKILLINDDVVQAKNIKKMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208 Query: 62 FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R V + + E ++ G G N + + P L +R Sbjct: 209 PLRISVILRGKAEINGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268 Query: 119 QMQKSKDENQ 128 + ++ +D + Sbjct: 269 RRKQYQDNLR 278 >gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] Length = 228 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + VF+ + EA E+E L + ++D M + F Sbjct: 2 NILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGL-DLAILDIMMPHIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + V L + + I G GA+ ++ KPF L ++ + Sbjct: 61 TVLQKIRETY-NFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRR 117 >gi|332665274|ref|YP_004448062.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332334088|gb|AEE51189.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 239 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +LLV+ V R + V A E E +K + + D M Sbjct: 4 NRILLVEDDQNFGDVLRSYLEMHDYDVTLAKDGVEGLESYKKGHY-DLCIFDVMMPKKDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + +L + + ++ G R GA+ ++ KPFN E L F + + + Sbjct: 63 FTLAREIREKDREMPIVFLTAKTMKDDVLEGFRIGADDYISKPFNSEELLFRIHAILKRS 122 Query: 122 KSKDENQ 128 ++K E + Sbjct: 123 QTKAELK 129 >gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+++ + + G+ V+ E + E E+ P+ +++D + G + Sbjct: 5 KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVE-EIHPDLILLDIMLPGINGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ ++V + + + D + G +GA+ ++ KPF E L +R + Sbjct: 64 EICRKIRQH---SNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRK 120 Query: 121 QKSKDENQFL 130 K + + + Sbjct: 121 SKQLNIIREI 130 >gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + G + A + EA E + + + +V+D M + Sbjct: 3 KTILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHV-DLVVLDIMMPVMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + A +++ ++V + L + E+ + G + G +S++ KP + + L ++ L + Sbjct: 62 WTAC-KELRKISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKRT 120 Query: 122 KSKDENQ 128 S++ENQ Sbjct: 121 YSEEENQ 127 >gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 231 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + +V R + GF V A + A + + E P+ + D M + F Sbjct: 4 KILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSES-PDLAIFDIMMPEMNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + +L I G GA+ ++ KPFN + ++ + + Sbjct: 63 ELTKRVR-ITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKY 121 Query: 123 SKD 125 D Sbjct: 122 KLD 124 >gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 239 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R + + G+ V A EA ++ P+ +V+D + F Sbjct: 9 TVLVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDR-CRPDLIVLDVMLPDTDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V +L + E I G +G + ++ KPF+ + + +R + + Sbjct: 68 AVTRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRR 125 >gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium kansasii ATCC 12478] Length = 227 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + L GF T A ++ + +++D + G+ Sbjct: 1 MTNVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 249 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + ++ G+ V + RE P+ +++D + G+ Sbjct: 17 MPNILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNP-PDLVILDLMLPGLD 75 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G + + L D + G GA+ ++ KP L +R L Sbjct: 76 GLQVCRLLRADSAG--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 133 Query: 119 QMQKSKDEN 127 + + Sbjct: 134 RRSSLSEPQ 142 >gi|260642820|ref|ZP_05417466.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260620414|gb|EEX43285.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1343 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + ++ ++ EA E P+ ++ D M + Sbjct: 1076 QRILIVEDNDELRNYLSQTLS-EDHLIQVCSNGKEALTVIP-EYKPDLVISDIMMPEMRG 1133 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G R GA+ ++LKPFN L+ + L Sbjct: 1134 DELCQAIKSNIETSHIPVILLTALNNEKDILSGLRIGADEYVLKPFNIGILKATISNLLA 1193 Query: 120 MQKSKD 125 + Sbjct: 1194 NRALLR 1199 >gi|189464563|ref|ZP_03013348.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM 17393] gi|189438353|gb|EDV07338.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM 17393] Length = 1370 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+ D + +R+ R + + E + EA E K+ P+ L+ D M + Sbjct: 1103 RILIADDNEEIRRYIRQELTP-DYHITECNNGQEAFEQIIKD-APDALISDVMMPEMDGM 1160 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ L + + V L +++ E + G ++++ KPFN + L+ +R + Sbjct: 1161 TLCRKIRQNILVSHIPVILLTAKINEESNLEALEGGVDAYITKPFNIDVLKKTIRNVIYR 1220 Query: 121 QKS 123 + Sbjct: 1221 HEL 1223 >gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 248 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A ++ P+ +V+D + + Sbjct: 22 RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAV-RAARDFRPDAVVLDVMLPDMDGL 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 81 SVLGRLRREYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140 Query: 123 S 123 S Sbjct: 141 S 141 >gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 231 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLVD + +V L G+ V A EA E ++E P+ +V+D M + Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREE-PDLVVLDIMMPRL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++++ +DV V L + + G GA+ ++ KPF+ + L ++ + Sbjct: 60 SGF-EVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL 117 >gi|17228672|ref|NP_485220.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130524|dbj|BAB73134.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 440 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + KV + G+ + AT A E E P+ +++D M + F Sbjct: 11 TVLIVDDNPTNLKVLSDAISSLGWEILIATDGESAIEEAEYA-QPDIILLDVMMPEMDGF 69 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ D+ V +L D + G ++ KPFN + + ++ ++ Sbjct: 70 QTCAELKSKTSTKDIPVIFLTALTDQFDKVLALVTGGVDYITKPFNLDEVLVRIQVHLKL 129 Query: 121 ----QKSKDENQFLDAI 133 ++ + +NQ LD + Sbjct: 130 SFLTKELEIKNQELDKL 146 >gi|330831457|ref|YP_004394409.1| two-component system response regulator [Aeromonas veronii B565] gi|328806593|gb|AEB51792.1| Two-component system response regulator [Aeromonas veronii B565] Length = 426 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + K+ G+ V A S A + ++ + ++ D M G+ Sbjct: 1 MSRILLVDDDVSLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA-DLVLSDLRMAGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V + I R+G SFL KP N++ L + + Sbjct: 60 GLALFERIQAQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPINKDELFATIEHALSL 119 Query: 121 QKSKDENQ 128 + K + + Sbjct: 120 TRPKQQQE 127 >gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 203 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 +LVD + + G+ V A + +A E E+E +P ++ D M + Sbjct: 1 MLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEE-VPELIICDIMMPEMDGYTL 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +R+ + V +L + E + G GA+ +++KPF+ E L + + + Sbjct: 60 VKLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQTE 119 >gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185] gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185] Length = 228 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + D G+ V EAT EA E+ + + +++D + + Sbjct: 1 MQRNILIVEDEDILREIVKDYLLDDGYEVLEATDGKEALSIFEEHEV-HLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWSVCRRIRK---TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 IESR 120 >gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|225850505|ref|YP_002730739.1| transcriptional activator protein IrlR [Persephonella marina EX-H1] gi|225645423|gb|ACO03609.1| transcriptional activator protein IrlR [Persephonella marina EX-H1] Length = 218 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + G++V A EA ++ + +++D + + + Sbjct: 2 KILIVEDNVQLNDTLKEVLEINGYLVDTAFDGEEALDYLNATEY-DLIILDIMLPKIDGY 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + + L + E + G GA+ +L+KPF + L +R L + Sbjct: 61 QVCQLARDKGINTPILMLTAKDRLEDKVKGLDIGADDYLVKPFEIDELIARVRALIRRAS 120 Query: 123 SKDEN 127 ++ N Sbjct: 121 AEKSN 125 >gi|157375999|ref|YP_001474599.1| two-component response regulator [Shewanella sediminis HAW-EB3] gi|157318373|gb|ABV37471.1| two-component response regulator [Shewanella sediminis HAW-EB3] Length = 383 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+VD + + R + D + V AT+ +A E + P +++D M + Sbjct: 17 TLLVVDDTPANISLLREILKDQ-YKVKIATNGVKALEVAVSKPAPELILLDIMMPEMDGY 75 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ + +L + + G GA ++ KP + + ++ + Sbjct: 76 QVCERLKGDEATRDIPIIFLTAKAEVIDETKGLAMGAVDYITKPISPPIVLERVKTQLTL 135 Query: 121 QKSKD----ENQFLD 131 ++++D +N+ L+ Sbjct: 136 KEARDFLKNQNELLE 150 >gi|331085450|ref|ZP_08334535.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407688|gb|EGG87186.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + G+ A + A P+ +++D + Sbjct: 1 MNKLLILVVEDDTSVRNLITTTLKAHGYRHQTAANGQTAI-LEASSYNPDIVLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++ +++ + + + I AGA+ +L KPF+ E L +R Sbjct: 60 MDGV-EIIRKIRSWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQ 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium sticklandii DSM 519] gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium sticklandii] Length = 230 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + ++ G+ A E ++ P+ ++ D M + Sbjct: 4 KILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALF-RDSNPDLVISDVMMPTIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ L +DV V L + + + G GA+ ++ KPF+ + L + + + Sbjct: 63 -EVLREIRLISDVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVMLKRTY 121 Query: 123 SKDENQF 129 EN+ Sbjct: 122 KTIENKQ 128 >gi|300869426|ref|ZP_07114011.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300332556|emb|CBN59209.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 377 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+VD V L ++ + ++ A + +A E+ + P+ +++D M G + Sbjct: 5 SILIVDDEPDNFDVIETLLSEQDYQLYYAANGHDALEYLDT-FEPDLILLDVMMPGIDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + V + + + AGA+ F+ KP N LR + + ++ Sbjct: 64 EVCRQIKALSKWQAVPIIMVTALNSKSDLAYCLTAGADDFISKPVNGIELRARVHSMLRI 123 Query: 121 QKSKDENQFL 130 ++ D Q L Sbjct: 124 KQQYDNIQTL 133 >gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 6/119 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + + +G+ VF A+S EA E + P+ +++D + G L Sbjct: 7 RILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRH-RPDLILLDLGLPGISGL 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E VR+ +++ + L ++ + GA+ ++ KPF + +R + Sbjct: 66 EVCRKVREQ---SNLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALR 121 >gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] Length = 229 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268] gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268] Length = 237 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + G+ V +A + + EKE + + +++D M G+ Sbjct: 1 MQKILVCDDDKQIVEAISIYLTGEGYQVIKAFDGYDVLKILEKENV-DLIILDVMMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN + ++ + Sbjct: 60 GIRTTLKIREK-SSIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLRR 118 >gi|225405674|ref|ZP_03760863.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme DSM 15981] gi|225042775|gb|EEG53021.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme DSM 15981] Length = 238 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ +R+ G+ VF+A E + E+E + ++D M + Sbjct: 7 RILLVEDDKEIREGVEIFLRSQGYQVFQAADGLEGLKLLEQEEV-QLAIVDVMMPRMDGI 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+ + D V +L + + I G GA+ ++ KPF L + + + Sbjct: 66 TMVVKLREMY-DFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSQLRRYR 124 >gi|225017492|ref|ZP_03706684.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum DSM 5476] gi|224949731|gb|EEG30940.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum DSM 5476] Length = 237 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R G++V EA EA + C ++ + L++D M + Sbjct: 17 QHILIVDDEEKIRAIIRKYAEFEGYLVSEAADGMEAVKLC-RDRDFDILILDVMMPELDG 75 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V L + I G G + +++KPF+ L ++ + Sbjct: 76 FSTCREIRK---FKNTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKAILN 132 Query: 120 MQKSKDENQFLDA 132 + + + A Sbjct: 133 RSQPPQAEKEIAA 145 >gi|117621451|ref|YP_858400.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562858|gb|ABK39806.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 240 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + G V A E + +E + LV+D M G Sbjct: 6 THILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKE-MKRLLEEREFDLLVLDLMMPGEDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ + + + L + I G GA+ +L KPFN L ++ + + Sbjct: 65 LTLC-RELRAKSSLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRT 123 Query: 122 KSKDE 126 + + + Sbjct: 124 QVEPQ 128 >gi|113866613|ref|YP_725102.1| response regulator [Ralstonia eutropha H16] gi|113525389|emb|CAJ91734.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 247 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R GF V + + + P +V+D M V Sbjct: 7 TQILVVDDDPELRDLLREYLTQQGFAVSVMHDG-DGLQARLERERPALIVLDLMMPKVDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A D+ V L D I G GA+ +L KPF+ L + + + + Sbjct: 66 LTALRNLRAKNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125 Query: 122 KSK 124 ++ Sbjct: 126 LAR 128 >gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 243 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 6/131 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ F A E + ++ + +V+D + Sbjct: 7 ILIVDDEPEIRRLLVDYLMRNNFEAVAARDGREMWQALDRH-AIDLVVLDLMLPDTDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +++ V L + I G GA+ +L+KPF+ L ++ + + Sbjct: 66 LCRELRAK---SNLPVLMLTALGEETDRIVGIEMGADDYLVKPFSPRELLARIKAVLRRT 122 Query: 122 KSKDENQFLDA 132 ++ N ++ Sbjct: 123 RALPPNMRPES 133 >gi|89901514|ref|YP_523985.1| Fis family two component sigma-54 specific transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346251|gb|ABD70454.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodoferax ferrireducens T118] Length = 474 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD IV + + ND + V A EA + + E + L++D M + Sbjct: 4 RILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVD-ETAYDILILDVMMPKMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ V + + + + + GA +L KPF+ + L+ + + ++ Sbjct: 63 EVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERRQ 122 Query: 123 SKDENQFLD 131 EN+ L Sbjct: 123 LMQENRKLK 131 >gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] Length = 219 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + + + V + + +++D + + Sbjct: 1 MTNILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKAL-NKSYDLIILDLMLPNIN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + + + + +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLKICRQIRQE---QSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 119 QMQ 121 + Q Sbjct: 117 RRQ 119 >gi|224537529|ref|ZP_03678068.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM 14838] gi|224520842|gb|EEF89947.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM 14838] Length = 1373 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L++D + + + + + +D + + A + E K+ P+ ++ D M + Sbjct: 1115 TTILMIDDNKELLWMLKDILSDE-YSILTAENGEEGL-VLLKQKTPDLIITDIMMPKIDG 1172 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I ++ + + L + ++ I G +GA++++ KPFN + LR +++L + Sbjct: 1173 ITLIKQLKSNKHTMHIPLIILSAKNTTDEKIEGIESGADAYIPKPFNTQYLRSIIKQLLK 1232 Query: 120 MQKSKDE 126 Q+ + Sbjct: 1233 KQEELKQ 1239 >gi|197123948|ref|YP_002135899.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] gi|196173797|gb|ACG74770.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] Length = 322 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD S + G+ V A +A E P+ +++D + + Sbjct: 6 KILVVDDSRTQLDWLVRVLEREGYDVRTAADGKDAIRKVRGEP-PDLVLLDMILPDMDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V+ P + V L ++ D + +AG R GA+ FL KPF + + ++ Sbjct: 65 EVLRIVKARPEDQFIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRI 124 Query: 121 QKSKDENQ 128 + +D+ + Sbjct: 125 KTLQDQLR 132 >gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ I+ + R+ G+ V A E ++ P+ +++D + + Sbjct: 3 MSTILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRD-QPDMVILDVMLPRLD 61 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ V + L D IAG GA+ ++ KPF+ L +R + Sbjct: 62 GFSVCRILRQESE---VPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIM 118 Query: 119 QMQKSK 124 + + + Sbjct: 119 RRSERR 124 >gi|29349519|ref|NP_813022.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341428|gb|AAO79216.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1511 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R R +F + V EA+ E K LP+ ++ D M +E Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASEGMEGWSKALK-YLPDIIISDVMMPEKDGIEM 1293 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1294 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1353 Query: 122 KSKD 125 K ++ Sbjct: 1354 KLQN 1357 >gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLVD + + GF V A E + + +V+D + G+ F Sbjct: 3 ILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKAL-QPGIDLVVLDVMLPGIDGF- 60 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ + V V L + I G GA+ +L KPFN L +R + + + Sbjct: 61 EILKRLRQRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYE 119 >gi|313888528|ref|ZP_07822195.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845557|gb|EFR32951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 223 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+V R G V EA +A + KE + +V+D M + Sbjct: 1 MFKILVVDDEKSIREVIRTYAEFEGHEVVEAVDGLDAIDKV-KEEDFDVIVMDIMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ +++ ++ V L + + G G + ++ KPF+ + L + + Sbjct: 60 GFSSY-KEIKKIKNIPVLMLSARSEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNR 118 Query: 121 QKSKDENQFLD 131 +EN+ ++ Sbjct: 119 NNKVEENKTME 129 >gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 225 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD +R++ + + G V EA +A + E + +V+D M + Sbjct: 1 MTKLLVVDDDAHIRELVKVFLQNEGLEVIEAIDGVDALSKLDTEK-IDMVVMDIMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R TD+ + L + + + I G G + +L+KPF L ++ + Sbjct: 60 GWALCEEIR--SFNTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSIL 117 Query: 119 QMQK 122 + + Sbjct: 118 KRYR 121 >gi|294643180|ref|ZP_06721009.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|292641478|gb|EFF59667.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] Length = 1307 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + + + + V A + EA + E++ + + ++ D M + Sbjct: 1061 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1118 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q + + V L + + E I G GA++++ KPF+ E LR + L Sbjct: 1119 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1178 Query: 121 QKSKDE 126 ++ Sbjct: 1179 RERLRR 1184 >gi|293369022|ref|ZP_06615621.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292635894|gb|EFF54387.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1307 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + + + + V A + EA + E++ + + ++ D M + Sbjct: 1061 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1118 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q + + V L + + E I G GA++++ KPF+ E LR + L Sbjct: 1119 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1178 Query: 121 QKSKDE 126 ++ Sbjct: 1179 RERLRR 1184 >gi|242281135|ref|YP_002993264.1| Fis family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242124029|gb|ACS81725.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio salexigens DSM 2638] Length = 463 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R R + D GF V EA S +A E E P+ + +D + G+ Sbjct: 3 KNILIVDDEDGIRYSLRGILEDEGFDVSEAESGEKALEHL-NEDQPDLVFLDIWLPGMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V + + E ++ + GA F+ KP + E + + + Sbjct: 62 LEVLDRIKKEWDWLPVVMISGHGNIETAVSAIKKGAFDFIEKPLSLEKVVITAEKAVEFS 121 Query: 122 KSKDENQFL 130 + + EN+ L Sbjct: 122 RLQSENKAL 130 >gi|254416266|ref|ZP_05030020.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176948|gb|EDX71958.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 506 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++VD + V D GF V A A + E P+ +++D M G+ F Sbjct: 19 IVIVDDTPHNLGVLFDFLTDSGFKVLVAQDGQSALQKVEYAK-PDLILLDVMMPGIDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P D+ V +L D + G GA F+ KP +E ++ + ++ Sbjct: 78 TCRRLKANPATRDIPVLFLSALSDAVDKVKGFNLGAVDFITKPVQQEEVKARVTTHLALR 137 Query: 122 ----KSKDENQFLDA 132 + +++N L A Sbjct: 138 NLQKRLEEQNLQLQA 152 >gi|78061758|ref|YP_371666.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77969643|gb|ABB11022.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 395 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++D +R + + GF V + + + LV+D ME Sbjct: 164 RIVVLDDEAELRNMLQRFLTGHGFQVRAVADGKR-LDRLLQREPYDLLVLDLMMEPEDGL 222 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + + L + D + G GA+ +L KPF + L +R L + QK Sbjct: 223 SVCRRLRAEGQTLPILMLTAKGDAADKVVGLETGADDYLAKPFLPDELVARVRALLRRQK 282 Query: 123 SKD 125 Sbjct: 283 MAA 285 >gi|56552073|ref|YP_162912.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241762025|ref|ZP_04760109.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|4511977|gb|AAD21537.1| aerobic respiration control protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543647|gb|AAV89801.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241373491|gb|EER63078.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 241 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++++V+ +R + + + G++ S E E + + + +++D + G Sbjct: 4 QTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTV-DLILMDVMLPGKNG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ +R + V +L D + G G + ++ KPF ++ L +R + + Sbjct: 63 LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122 Query: 120 MQKSKDE 126 ++ E Sbjct: 123 RSQAVKE 129 >gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 230 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + + L GF VF A A + E + +++D + G+ Sbjct: 1 MTSVLIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAED-IDIILLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V V + + G GA+ ++ KP+ L +R + Sbjct: 60 GTEVCRQLRQ---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] Length = 221 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + ++ + V EA +F + ++ D M Sbjct: 2 RILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEY-DLIITDIMMPNVNGY 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EFI +R + V L + E I G +GA+ +++KPF + L +R L + Sbjct: 61 EFIEKLRNNKN--NTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118 >gi|323188052|gb|EFZ73347.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli RN587/1] Length = 461 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|284990061|ref|YP_003408615.1| response regulator receiver modulated diguanylate cyclase [Geodermatophilus obscurus DSM 43160] gi|284063306|gb|ADB74244.1| response regulator receiver modulated diguanylate cyclase [Geodermatophilus obscurus DSM 43160] Length = 767 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + L+VD +V ++ R G V A EA + E +P+ +V D +M G+ Sbjct: 9 RTALVVDDDEMVAELVRAGLESAGLTVVTAADGHEALDRL-AEAVPDVVVSDVNMPGMDG 67 Query: 62 FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 F +R P V + +L + ++ G R GA+ ++ KPF+ + L + Sbjct: 68 FALVSRLRAEPATRRVPLVFLSSRSQRDDVLTGLRLGADDYVRKPFDLDELVGRV 122 >gi|238750821|ref|ZP_04612319.1| Transcriptional regulator in 2-component system [Yersinia rohdei ATCC 43380] gi|238710965|gb|EEQ03185.1| Transcriptional regulator in 2-component system [Yersinia rohdei ATCC 43380] Length = 264 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L GF V A +A + + L I + + Sbjct: 33 MHKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDIMMPRKNGI 92 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 93 ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 149 Query: 121 QKSKDENQFLD 131 ++ Q +D Sbjct: 150 SNWSEQQQNVD 160 >gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 224 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ G+ V +A + +A EF + L++D M + Sbjct: 1 MK-ILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEY-DLLIVDILMPEMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V V +L E + G AG + +L+KPF L +R L + Sbjct: 59 GLTLVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRR 118 >gi|224535984|ref|ZP_03676523.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus DSM 14838] gi|224522398|gb|EEF91503.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus DSM 14838] Length = 1111 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLLV+ + + + L + + AT+ EA E E E + +V D M + Sbjct: 854 TLLLVEDNEDLLGLMVKLLGT-DYKIHTATNGKEALEIVESED-IDLIVSDVMMPVMDGI 911 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + + + L + E + +GA++F+ KPFN L + L + Sbjct: 912 EFCRSIKGNFDTSHIPLILLTAKKQEEDRVEAYESGADAFITKPFNLSVLHARIGNLLKS 971 Query: 121 QK 122 ++ Sbjct: 972 RE 973 >gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes] gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes] gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes] Length = 233 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + + + GF V A E E P+ +V+D + + Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 + +V + L + + I G GA+ ++ KPF+ + ++ + + + K Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 125 DE 126 E Sbjct: 121 AE 122 >gi|170019466|ref|YP_001724420.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli ATCC 8739] gi|169754394|gb|ACA77093.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli ATCC 8739] Length = 461 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|146305871|ref|YP_001186336.1| response regulator receiver protein [Pseudomonas mendocina ymp] gi|145574072|gb|ABP83604.1| response regulator receiver protein [Pseudomonas mendocina ymp] Length = 395 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ L D + V A++ +A + P+ +++D M + Sbjct: 13 VLVVDDTPDNLQLISELLIDR-YRVKVASNGAKALRIAQASPAPDLILLDIMMPEMDGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P D+ V +L + + G GA ++ KP + L +R Q++ Sbjct: 72 VCRQLKADPQTRDIPVIFLTAKSEVAAEQMGFDLGAADYITKPISPPILLARVRAQLQLK 131 Query: 122 KSKD 125 + D Sbjct: 132 AATD 135 >gi|29349086|ref|NP_812589.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253571250|ref|ZP_04848657.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|29340993|gb|AAO78783.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] gi|251839203|gb|EES67287.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1381 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LLV+ + + + L + + VF A + E EKE + + +V D M + Sbjct: 1127 NTILLVEDNGELLHLMTKLLSRE-YNVFTAQNGKEGIAVLEKEDV-DLIVSDVMMPEMDG 1184 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +V+ + + + L + E GA++F+ KPFN L +R L + Sbjct: 1185 IEFCKYVKGHLEMSHIPMILLTAKNKEEDRAEAYEIGADAFISKPFNLTVLHARIRNLLK 1244 Query: 120 MQKSKDEN 127 ++ + Sbjct: 1245 YKERMARD 1252 >gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 254 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ V V GF A A + +E P+ +++D + + Sbjct: 24 TVLVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAW-RERRPDVVILDVMLPLMSGL 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R+ V L + + + G GA+ +++KPF+ + L + + Sbjct: 83 EVLRRRRAEDDHAAVIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLRRAE 142 >gi|323494579|ref|ZP_08099683.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546] gi|323311182|gb|EGA64342.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546] Length = 239 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 247 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A +E P+ +V+D + + Sbjct: 23 RVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTV-REFRPDAVVLDIMLPDMDGL 81 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R DV V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 82 AVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 139 >gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 244 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A + +A +++D M + Sbjct: 16 MK-ILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTTPDIGLVILDLMMPEMD 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ + + + L + I G GA+ ++ KPFN + +R L + Sbjct: 75 GM-EVIKRIRKDSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 133 Query: 121 QKSKDEN 127 + + N Sbjct: 134 SEGQMTN 140 >gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 247 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + + GF V EA E E LP+ +++D + G L Sbjct: 19 RILVVEDEAALALLLAYNLESEGFQVEHVERGDEA-EIRLSESLPDLVILDWMLPGVSGL 77 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + V L D + + G GA+ +++KPF+ L + L + Sbjct: 78 EICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLRR 137 Query: 121 QKSKDENQFLDA 132 + + L A Sbjct: 138 ARPERVATRLVA 149 >gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 222 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 50/133 (37%), Gaps = 6/133 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + F F A + K + +++D + + Sbjct: 1 MAKVLVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMF-KNNSFDIVLLDVMLPDMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + V + + + G GA+ +++KPF+ + ++ + Sbjct: 60 GWNVLKTIRESSK---IPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAIL 116 Query: 119 QMQKSKDENQFLD 131 K + + + Sbjct: 117 SRSKWAESDNLIS 129 >gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 219 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+V+ + + + V + + +++D + Sbjct: 1 MTNILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKAL-NKSYDLIILDLMLPNIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + + +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLEICRQIRQE---QSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 119 QMQ 121 + Q Sbjct: 117 RRQ 119 >gi|198276812|ref|ZP_03209343.1| hypothetical protein BACPLE_03015 [Bacteroides plebeius DSM 17135] gi|198270337|gb|EDY94607.1| hypothetical protein BACPLE_03015 [Bacteroides plebeius DSM 17135] Length = 1326 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 5/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R H +D + V + EA +F E P+ ++ D M + Sbjct: 1077 ILVVEDNVSLRSFIMHSLSDT-YRVEGVGNGQEALDFV-HEKQPDLILSDIMMPIMDGKR 1134 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + + L D E ++ G A+ +L+KPF+ L+ + L + + Sbjct: 1135 MCQILKEQMETSHIPIILLTALGDKEHILEGLEIKADQYLVKPFDIHILKATIHTLIENR 1194 Query: 122 KSKDENQFLDAI 133 + ++F A+ Sbjct: 1195 RMLR-DRFKSAV 1205 >gi|189464856|ref|ZP_03013641.1| hypothetical protein BACINT_01200 [Bacteroides intestinalis DSM 17393] gi|189437130|gb|EDV06115.1| hypothetical protein BACINT_01200 [Bacteroides intestinalis DSM 17393] Length = 1347 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 2 DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L +V+ + + F+D F V A + + E +P+ +V D M + Sbjct: 1091 KRILLIVEDNQDICNYIAESFSD-DFEVKTAANGQQGMEQALS-CIPDIVVSDVMMPIMN 1148 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + + L + + G + GA+S+L KPF+ L + L Sbjct: 1149 GITMCKMLKEDVRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRINNLL 1208 Query: 119 QMQKSKDE 126 + +K E Sbjct: 1209 ESRKRLAE 1216 >gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264] gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 223 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTQQTI 127 >gi|116328024|ref|YP_797744.1| sensor protein of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331523|ref|YP_801241.1| sensor protein of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120768|gb|ABJ78811.1| Sensor protein of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125212|gb|ABJ76483.1| Sensor protein of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 222 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL + +R R + GF + A + E ++ P+ LV+D + Sbjct: 1 MRTILLTEDEPGIRDTIRVVLESEGFKMISAMTGKECLSLLKES--PDLLVLDVGLPDGN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++++ + V L + G GA+ +++KPF+ L ++ + + Sbjct: 59 GF-EILKELRKKNSIPVILLTARESELDRVLGLELGADDYMVKPFSPRELVARIKAVLRR 117 Query: 121 QKSKDENQFLD 131 E + + Sbjct: 118 YDGSSEKKRTE 128 >gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125] gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125] Length = 231 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+ D +R + G+ V + + EA + ++ + + L++D M Sbjct: 5 SILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQ-VIDLLILDIMMPNIDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ ++ + +L + + G GA+ ++ KPF L + + Sbjct: 64 EVARQIREQ---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRR 120 Query: 121 QKSKDE 126 K ++ Sbjct: 121 FKKLNQ 126 >gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC BAA-286] Length = 221 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + + G+ + A + E E P+ +++D + + Sbjct: 1 MQHILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEK-PDLILLDWVLPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + ++ + +L + I G + GAN ++ KPF+ E L ++ Sbjct: 60 GIDVCKAIRQEDI--NIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERIKIHF 117 Query: 119 Q 119 + Sbjct: 118 R 118 >gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + ++ GF V A A K+ P+ +++D M G+ F Sbjct: 11 KILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLM-KQFQPHVVILDVMMPGMDGF 69 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++M +V V L + + + + G GA+ +++KPF+ E L + + Sbjct: 70 EVCRMLKKMD---NVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIRN 126 Query: 121 Q 121 Q Sbjct: 127 Q 127 >gi|255525277|ref|ZP_05392218.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187784|ref|ZP_06856178.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255511042|gb|EET87341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047741|gb|EFG87181.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + +R++ R L G+ V EA + +A +K + +++D M Sbjct: 1 MKNILIADDNEEIREIVRVLLESEGYNVMEAVNGEDAVIKVDKN--IDLIILDIMMPIKS 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ T + +L + G +G + +L KPF+ L ++ L Sbjct: 59 GFKACVEIREK---TSAPILFLTAKTQDSDKCMGFSSGCDDYLSKPFSYTELVSRVKALL 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|229592371|ref|YP_002874490.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|312962826|ref|ZP_07777313.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6] gi|229364237|emb|CAY51934.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] gi|311282853|gb|EFQ61447.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6] Length = 227 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G ++GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVLRR 119 Query: 121 QK 122 + Sbjct: 120 AQ 121 >gi|298528354|ref|ZP_07015758.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] gi|298512006|gb|EFI35908.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] Length = 1029 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD +V L + V A A E P+ +++D M + Sbjct: 13 VLIVDDQPASIEVLGSLL-REDYHVLVAAGGTRALEMVFGNTRPDLILLDIMMPDMDGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ V +L E G GA ++ KPF +R +R ++ Sbjct: 72 VCRRLKADERTRGTPVIFLTAMDQDEDEELGFSLGAADYITKPFKPSIVRARVRTQINLK 131 Query: 122 KSKDENQF 129 D + Sbjct: 132 LHADLLEQ 139 >gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G+ V A +E P+ +++D + G+ Sbjct: 5 ILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTA-RESNPDLILLDWMLPGISGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM--Q 121 R G V + L + + + G AGA+ +++KPF+ E L +R + + Sbjct: 64 ICKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTSE 123 Query: 122 KSKDENQFLD 131 + DE QF+D Sbjct: 124 NNADEVQFMD 133 >gi|119899448|ref|YP_934661.1| two-component system regulatory protein [Azoarcus sp. BH72] gi|119671861|emb|CAL95775.1| two-component system regulatory protein [Azoarcus sp. BH72] Length = 227 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+V+ + + G+ V A + +V+D + G+ Sbjct: 3 TRLLIVEDNRDILANLADYLTLKGYEVDCAQDGLTGLHLAATHH-FDLIVLDVMLPGMDG 61 Query: 62 FIAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F R +D + L + + G AGA+ +L KPF L + + + Sbjct: 62 FTLCKRLREGERSDTPIIMLTARDALDDRLIGFSAGADDYLTKPFALSELVARIEAVLK 120 >gi|330447153|ref|ZP_08310803.1| osmolarity response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491344|dbj|GAA05300.1| osmolarity response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 239 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KVLVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLARETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124 Query: 123 SKD 125 + Sbjct: 125 IEA 127 >gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 230 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ VF AT+ +A K P+ +++D M + Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARK-TSPDLIILDVMMPKMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R MP + F+ +L ++ IAG GA+ ++ KP L + + + Sbjct: 65 IEACRIMRGMPEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAILR 124 Query: 120 MQKSKDENQ 128 + E + Sbjct: 125 R-NLQGEEE 132 >gi|304383610|ref|ZP_07366069.1| DNA-binding response regulator/sensor histidine kinase [Prevotella marshii DSM 16973] gi|304335134|gb|EFM01405.1| DNA-binding response regulator/sensor histidine kinase [Prevotella marshii DSM 16973] Length = 901 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+++ + V D + + A E + KEL+P+ ++ D M L Sbjct: 647 RILVIEDNADVAAYIGSRLADR-YAILYAPDGNEGLKKA-KELVPDLIITDLMMPHTDGL 704 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR + V + + ++ +AG +AGA+++L KPFN + LR + +L + Sbjct: 705 EVCRQVRDDEIINHVPIIVVTAKITEADRVAGLQAGADAYLAKPFNSDELRTRVEKLLEQ 764 Query: 121 QKSKDE 126 ++ E Sbjct: 765 RRLLRE 770 >gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 229 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A ++ P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RDTKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V V L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|298385015|ref|ZP_06994574.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298262159|gb|EFI05024.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1511 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R R +F + V EA+ E K LP+ ++ D M +E Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASEGMEGWSKALK-YLPDIIISDVMMPEKDGIEM 1293 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 1294 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1353 Query: 122 KSKD 125 K ++ Sbjct: 1354 KLQN 1357 >gi|226315460|ref|YP_002775356.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226098410|dbj|BAH46852.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 1024 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++VD I + + + V ATS +A E+ + + ++ D M Sbjct: 698 RIIVVDDDSINLNILSKMLESDQYEVSTATSAQQALSILERNPV-DLVISDVMMPHVSGY 756 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ ++ V L E +IAG +AGAN ++ KP + L+ ++ L + Sbjct: 757 ELTRIIRERFSVLELPVLLLTARSRSEDIIAGFQAGANDYVKKPVDAWELKARVKALTEF 816 Query: 121 QKSKDENQFLD 131 + S DE ++ Sbjct: 817 KISFDERLRME 827 >gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM 16841] gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + GF V +A EA E K + L++D M + Sbjct: 1 MQTILVCDDDKEIVEAIEIYLQQEGFHVLKAYDGEEALEIL-KNNEVHLLIMDVMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRATLKIRE-NSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRR 118 >gi|198277651|ref|ZP_03210182.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135] gi|198269348|gb|EDY93618.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135] Length = 1021 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L++D + VR + L D + V EA + E K +P+ +V D M + Sbjct: 772 VLVIDDNQDVRDYVKMLLQDK-YTVIEAVNGQEGIRQAMK-YVPDVVVCDVMMPVMDGIE 829 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L E+ I G +GA+S+L KPFN + L +R L + Sbjct: 830 CCKRLKSELQTSHIPVLMLTAYAMDEQRIQGYDSGADSYLTKPFNAKLLLARIRNLIDNR 889 Query: 122 KSKD 125 K Sbjct: 890 KRLK 893 >gi|44004551|ref|NP_982220.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|190015016|ref|YP_001966750.1| DNA-binding response regulator [Bacillus cereus] gi|190015282|ref|YP_001967074.1| DNA-binding response regulator [Bacillus cereus] gi|218848201|ref|YP_002455136.1| DNA-binding response regulator [Bacillus cereus AH820] gi|296506624|ref|YP_003667858.1| DNA-binding response regulator [Bacillus thuringiensis BMB171] gi|42741617|gb|AAS45062.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|116584692|gb|ABK00807.1| DNA-binding response regulator [Bacillus cereus] gi|116584963|gb|ABK01072.1| DNA-binding response regulator [Bacillus cereus] gi|218540252|gb|ACK92648.1| DNA-binding response regulator [Bacillus cereus AH820] gi|296327211|gb|ADH10138.1| DNA-binding response regulator [Bacillus thuringiensis BMB171] Length = 227 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + G+ +ATS EA E + L++D M + Sbjct: 1 MIDILLVDDEPRMLDLLSLYLTPRGYHCIKATSGKEAISLVEAKEFR-LLLLDIMMPEMN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L D + +I G + GA+ ++ KPF+ E L + + Sbjct: 60 GWETCNKIRE---FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+++ + + G+ V+ E + E E+ P+ +++D + G + Sbjct: 5 KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVE-EIHPDLILLDIMLPGINGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ ++V + + + D + G +GA+ ++ KPF E L +R + Sbjct: 64 EICRKIRQH---SNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRK 120 Query: 121 QKSKDENQFL 130 K + + + Sbjct: 121 SKQLNIIREI 130 >gi|312886453|ref|ZP_07746062.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311301081|gb|EFQ78141.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1346 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 10/131 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+LLVD + R + + V EAT+ + + P+ +V D SM + Sbjct: 1084 SILLVDDNDDFRNYLKESLEKS-YTVTEATNGKDGWQKALSGH-PDLVVSDVSMPVMDGI 1141 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E I G + AN +L KPF+ E L ++ + + Sbjct: 1142 ELCRKIKTDKRTSFIPVILLTALGREEDHIRGLQTEANDYLTKPFSFEILNTRIKNMISL 1201 Query: 121 QKSKDENQFLD 131 NQ L Sbjct: 1202 ------NQRLK 1206 >gi|302669419|ref|YP_003829379.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302393892|gb|ADL32797.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 227 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+ D + + + V + +A ++ + +++D M G+ Sbjct: 5 MK-LLIADDETELVNALVAILKHSNYTVDAVYNGTDALDYALAGDY-DGIILDIMMPGMD 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G V +L + + + I G GA+ +L KPF+ L +R + + Sbjct: 63 GTEVLKKIREKGLSTPVLFLTAKTEVDDRIRGLDLGADDYLPKPFDMGELLARVRAMLRR 122 Query: 121 Q 121 + Sbjct: 123 K 123 >gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K + V A EA E + + + +++D + + Sbjct: 8 MSRVLVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQE-FDIILLDLMLPKID 66 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ ++V + + + + I G GA+ ++ KPFN ++ M+ + Sbjct: 67 GLSVCRQIRE---FSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIM 123 Query: 119 QM 120 + Sbjct: 124 RR 125 >gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 230 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ + + R G V T A + + P+ LV+D M + Sbjct: 7 RVLVAEDDPKQAHLIRTYLERDGHDVLVVTDGRRAVDE-TRSRHPDLLVLDIMMPKLDGM 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V + L D + ++ G + GA+ ++ KPF+ L +R L + Sbjct: 66 DVCRVLRSD---SQVPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALLRR 122 Query: 121 QKSKD 125 + + Sbjct: 123 SRPES 127 >gi|257093200|ref|YP_003166841.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045724|gb|ACV34912.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 250 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D +R + GF + + + P+ LV+D + G Sbjct: 11 MKKILLIDDDSELRPLLATYLGRHGFDTLLLPDTRQ-LDAFLQRYQPHLLVLDLMLPGED 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + V L + + G GA+ +L KPF+ L + + + Sbjct: 70 GLAACRRLRARGETLPVIMLTARDEPVDRVIGLEMGADDYLGKPFDPRELVARIEAVLRR 129 >gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] Length = 249 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A A +E P+ +V+D + + Sbjct: 24 RVLVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTA-REFRPDAVVLDMMLPDMDGL 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 83 AILGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 142 Query: 123 SKDE 126 + D Sbjct: 143 AADR 146 >gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 237 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + KV + GF V A A +E P +V+D + G + Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSV-REFEPALIVLDLMLPGFDGM 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + + G AGA+ +++KPF L ++ L + Sbjct: 72 EVCRRIR---TFSDAYILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128 Query: 121 QKSKD 125 ++ Sbjct: 129 PRASS 133 >gi|224368229|ref|YP_002602392.1| transcriptional regulator (FIS family protein) [Desulfobacterium autotrophicum HRM2] gi|223690945|gb|ACN14228.1| transcriptional regulator (FIS family protein) [Desulfobacterium autotrophicum HRM2] Length = 450 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + + + D GF V A + EA + E E P+ +++D M G+ Sbjct: 5 ILIVDDEASIIESLEGILADDGFEVSHAFNGYEALKKIEAES-PDIVLLDIWMPGMDGIE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 ++ V + E + ++GA FL KP + + + + ++ Sbjct: 64 TLKEIKKNFPNLPVVMITGHGTIEAAVDATKSGAFDFLEKPLSIDKIIVTINNALNFRRL 123 Query: 124 KDENQFL 130 ++EN++L Sbjct: 124 EEENRYL 130 >gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 229 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|156743542|ref|YP_001433671.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM 13941] gi|156234870|gb|ABU59653.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM 13941] Length = 619 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 6/136 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D R V + L G V A + EA E P+ L++D M + F Sbjct: 6 TILIADDDPGARLVLQRLLTREGHRVLMAQNGAEALRQSI-EYTPDLLLLDVLMPEIDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R ++ + + D + + G AGAN F+ KPF+ L +R + ++ Sbjct: 65 EVCRQLRNHTRLREIPILLITSLGDQQSRVEGLSAGANGFITKPFDMAELLAHVRTITRL 124 Query: 121 ---QKSKDENQFLDAI 133 ++ E + + Sbjct: 125 NRYRRLLSEQERFQRL 140 >gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory system with EnvZ [Serratia symbiotica str. Tucson] gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory system with EnvZ [Serratia symbiotica str. Tucson] Length = 239 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++LKPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|294678156|ref|YP_003578771.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB 1003] gi|294476976|gb|ADE86364.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB 1003] Length = 466 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD R V + + + +A + EA E LP+ +++D + + Sbjct: 4 KILIVDDVATNRIVLKVKLSGARYETVQAGTGQEALRLVTLE-LPDLVLLDVQLPDISGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ PL ++ V + E + RAGA+ F++KPF TL +R L +M Sbjct: 63 EVCRRLKSDPLTQNLPVIMVTAFPSPETRLEALRAGADDFIVKPFEELTLLARLRSLMRM 122 Query: 121 QKSKDENQFLDA 132 +++ +E + ++ Sbjct: 123 RETDEELRLRES 134 >gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 229 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKALRSRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|209522684|ref|ZP_03271242.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496733|gb|EDZ97030.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 398 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD ++ + + G+ V +A + A + E E P+ +++D M + Sbjct: 13 ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAET-PDLILLDIMMPELDGYQ 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118 +++ P ++ + +L D + G ++ KPF+ + + +R Sbjct: 72 VAKYLKDDPTTREIPIIFLSALSDTMDKVLAFDVGGVDYITKPFHVQEVLARVRTQLTIS 131 Query: 119 -QMQKSKDENQFLD 131 Q Q+ +NQ L+ Sbjct: 132 QQKQQLITQNQQLE 145 >gi|170077988|ref|YP_001734626.1| two-component system response regulator [Synechococcus sp. PCC 7002] gi|169885657|gb|ACA99370.1| two-component system response regulator [Synechococcus sp. PCC 7002] Length = 131 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 8/127 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC------EKELLPNYLVIDE 54 M +L+V+ S R++ L G V A EA E E LPN +V+D Sbjct: 1 MSRILVVEDSLSQREMISELLKGNGLTVDVAGDGLEALETLSQMAKNAAETLPNLIVLDI 60 Query: 55 SMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 M + E ++ P ++ + + + G + GA++++ KPF L Sbjct: 61 VMPRMNGYELCRRLKSDPKIQNIPIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPAELIG 120 Query: 113 AMRELPQ 119 +++L + Sbjct: 121 TIKQLLR 127 >gi|206967861|ref|ZP_03228817.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229177114|ref|ZP_04304503.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188792|ref|ZP_04315827.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|206736781|gb|EDZ53928.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228594693|gb|EEK52477.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606295|gb|EEK63727.1| Two-component response regulator [Bacillus cereus 172560W] Length = 223 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIE-QKEFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|149908621|ref|ZP_01897283.1| FOG: CheY-like receiver [Moritella sp. PE36] gi|149808455|gb|EDM68392.1| FOG: CheY-like receiver [Moritella sp. PE36] Length = 120 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ + G+ V A + + + ++ D +M + Sbjct: 1 MKRILAVDDSVSIREMVQFTLKQAGYQVDSAVDGVDGLAKAKTGN-FDLIISDINMPRMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R + L E +K +AG AGA +++KPFN E L ++++ Sbjct: 60 GISLIRKLRSESAYKFTPILMLTTESGTDKKMAGKSAGATGWIVKPFNPEKLIATVKKVL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|104783427|ref|YP_609925.1| response regulator ColR [Pseudomonas entomophila L48] gi|95112414|emb|CAK17141.1| response regulator ColR [Pseudomonas entomophila L48] Length = 227 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119 Query: 121 QK 122 + Sbjct: 120 AQ 121 >gi|186681380|ref|YP_001864576.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186463832|gb|ACC79633.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1177 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+VD + +R +F G+ V A + E KE++P+ +V D M L Sbjct: 820 SILVVDDNPDLRTYVSEIFRRNGYYVRTARNGYEG-HSLAKEIIPSLIVTDLMMPLVSGL 878 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R + L +VD E I G GA+++L KPFN L +R L + Sbjct: 879 EMIQMIRNEEKLKGTPIILLTAKVDEETRIEGTEHGADAYLAKPFNDRELLAEVRNLLAL 938 Query: 121 QKSKDE 126 ++++ Sbjct: 939 KENERR 944 Score = 102 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 2/117 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + F + V ATS A + +E ++ D+ M + Sbjct: 10 KILVVDDEPDNLDLLYRTF-YRDYKVLRATSGPAALDLLAQEGEVAVIISDQRMPMMSGT 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP 118 D+ L D E ++ AG ++ KP+ E L+ +R+ Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQAL 125 >gi|307727152|ref|YP_003910365.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587677|gb|ADN61074.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 246 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + + ++ P+ +V+D M G Sbjct: 7 VLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQ-MRAALEQGTPDLIVLDLMMPGEDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|297517136|ref|ZP_06935522.1| osmolarity response regulator [Escherichia coli OP50] gi|242378928|emb|CAQ33726.1| ompR [Escherichia coli BL21(DE3)] gi|253979390|gb|ACT45060.1| osmolarity response regulator [Escherichia coli BL21(DE3)] Length = 239 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 NILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 222 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+V+ +RK+ + + GF + EA A E K + +V+D + Sbjct: 1 MNKILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKF-KNNNIDLIVLDLMLPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + +R++ +DV + L + E + G GA+ ++ KPF+ + L ++ + Sbjct: 60 GITVCSKIREI---SDVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVL 116 Query: 119 QMQKSKDENQ 128 + K +DE + Sbjct: 117 KRIK-EDEKE 125 >gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] Length = 237 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A A + + + +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SIVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LIRR 120 >gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855] gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4] gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855] gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 224 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++LV+ + +FG V E + E + L++D M G+ Sbjct: 1 MAKIILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNES-FDLLILDIIMPGMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE RQ V L + ++ G AGA+ +L+KPF+ + L ++ L Sbjct: 60 GLELCRMYRQRFGY-HSPVVMLTALGTTDDIVKGLDAGADDYLVKPFSFQELEARIKALL 118 Query: 119 QMQK 122 + K Sbjct: 119 RRSK 122 >gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 228 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + + F +A + EA + + E +++D M + Sbjct: 5 ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIID-EKEIELVLLDIMMPQIDGIE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A +R ++ + + + + I G AGA+ ++ KPFN L ++ + + Sbjct: 64 ACMRIR-KDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQ 121 >gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 228 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + + F +A + EA + + E +++D M + Sbjct: 5 ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIID-EKEIELVLLDIMMPQIDGIE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A +R ++ + + + + I G AGA+ ++ KPFN L ++ + + Sbjct: 64 ACMRIR-KDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQ 121 >gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium 2_1_46FAA] Length = 241 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M ++L+V+ +R + + A + +A P+ +++D + Sbjct: 2 MKGTKPNVLVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAI-MLAAANNPDIILMDLGL 60 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + I +R++ + V + + D +A GA+ +L KPF+ L +R Sbjct: 61 PDMDG-IEVIRKIRSWSVVPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARLRA 119 Query: 117 LPQMQK 122 + + Sbjct: 120 TIRRVQ 125 >gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 228 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ V EA EA E+ + + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAMDGKEALSIFEEHEV-HLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWTVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQKSKDEN 127 + + S N Sbjct: 117 MESRYSSAVN 126 >gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 225 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF ++A +A + + E+ + +++D M + F Sbjct: 4 NILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii ATCC 33806] gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii ATCC 33806] gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 234 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 5/131 (3%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +L+VD + ++ GF V ATS +A E E P+ ++D M Sbjct: 1 MKENSTKVLVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAP-EFKPDAFILDVMM 59 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 G+ F + LG + V +L + E I G GA+ ++ KPF+ E + +R Sbjct: 60 PGMDGFELLPKLRALGFEGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRV 119 Query: 117 LPQMQKSKDEN 127 + + E Sbjct: 120 ILRRGAQVAEE 130 >gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 229 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + GF V E + KE + L++D + G Sbjct: 1 MSKILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDY-DLLILDLMLPGTD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR++ + + + + + I G GA+ ++ KPF+ + ++ Sbjct: 60 GFEICKKVREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHM 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] Length = 231 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ G+ V A E + +++D + Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETW-DLVILDWWLPVEDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V +L + + G AGA+ +L KPF + L +R L + Sbjct: 63 QLLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRR 120 >gi|110346937|ref|YP_665755.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283048|gb|ABG61108.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 242 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + L G+ V A + R E + +V+D + G Sbjct: 10 ILVVDDHQDIRDLVAGLLAKEGYRVSAAADGRQMRRQLI-ESSVDLVVLDLMLPGEDGLT 68 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + T++ V L + D + G GA+ +L KPF L +R + + +S Sbjct: 69 LC-RDLRASTNIPVVMLTAKGDEFDRVLGLEMGADDYLTKPFGGRELVARIRAVLRRTRS 127 >gi|117926657|ref|YP_867274.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117610413|gb|ABK45868.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 241 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ R + GF V S + +V+D + G Sbjct: 6 RILIVEDDEPTRTMVADYLRGHGFEVRTLASGET-MNSTLAAWPADVIVMDLMLPGEDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + I G GA+ +L KPF+ L +R + + Sbjct: 65 TLCKRLSVDKQTADIPIIMLTARGEETDRIVGLEMGADDYLSKPFSTRELLARLRSVLRR 124 Query: 121 QKS 123 ++ Sbjct: 125 ARA 127 >gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 219 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+V+ + + + V + + +++D + Sbjct: 1 MTNILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKAL-NKSYDLIILDLMLPNIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + + +AG GA+ +++KPF+ E L +R + Sbjct: 60 GLEICRQIRQEYS---TPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPQKD 123 >gi|229826144|ref|ZP_04452213.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC 49176] gi|229789014|gb|EEP25128.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC 49176] Length = 257 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 4/123 (3%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD + + G+ V +A + E + ++D M Sbjct: 21 MKAKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMP 80 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 G+ + V+++ + + V L + I G GA+ ++ KPFN L ++ Sbjct: 81 GMDGL-SMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKAN 139 Query: 118 PQM 120 + Sbjct: 140 LRR 142 >gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 222 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A + + +V+D + G+ Sbjct: 1 MTRVLLAEDDAAISEPLARALRREGYEVTVRADGPGAL--LAGQSGVDLVVLDLGLPGMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L D + G AGA+ ++ KPF L +R L + Sbjct: 59 GLEVCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 118 >gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes] Length = 233 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + + + GF V A E E P+ +V+D + + Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 + +V + L + + I G GA+ ++ KPF+ + ++ + + + K Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 125 DE 126 E Sbjct: 121 AE 122 >gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 282 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 SLLLVD VR+ + D G F V A + EA ++ + LP ++ D M Sbjct: 57 SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYL-QHHLPALVISDIMMPQVDG 115 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +F+ +R+ + V +L I G + G ++FL KPF+ + L +R L Sbjct: 116 YQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLA 175 Query: 120 MQKSKD 125 Q++ Sbjct: 176 RQQASS 181 >gi|332826438|gb|EGJ99267.1| hypothetical protein HMPREF9455_00300 [Dysgonomonas gadei ATCC BAA-286] Length = 1371 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD + + LF D + + A E + LP ++ D M + Sbjct: 1123 LLIVDDNEDFCEFITSLFID-NYNIVTANDGEEGLRIVLDQ-LPEIILCDVMMPKMDGYE 1180 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F V+ + + + L + E +G AGA+ ++ KPFN + L + ++ + Q Sbjct: 1181 FCRQVKGDIRTSHIPIILLTAKSSEENRYSGIEAGADDYIAKPFNIDMLTLKIAKIIEKQ 1240 Query: 122 KSKD 125 K Sbjct: 1241 KKLQ 1244 >gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] Length = 229 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ +R++ + V +A A + +++ P +++D + G + Sbjct: 4 KILIVEDEKAIREMIALFLLQQNYQVIDAEDYQSAVKKLDEK--PKLILLDWMLPGRSGI 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +FI ++++ T + + L + I GA+ ++ KPF+ + L + L + Sbjct: 62 QFIQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALLRR 121 >gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 230 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 8/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ I+ + R+ G+ V A E ++ P+ +++D + + Sbjct: 3 MSTILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRD-QPDMVILDVMLPRLD 61 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ V + L D IAG GA+ ++ KPF+ L +R + Sbjct: 62 GFSVCRILRQESE---VPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIM 118 Query: 119 QM--QKSKDENQFLDA 132 + ++ + LDA Sbjct: 119 RRSDRRISALREVLDA 134 >gi|312879224|ref|ZP_07739024.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310782515|gb|EFQ22913.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 241 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ R GF T + ++D + Sbjct: 6 KRILVVDDDGELGELLRTYLEREGFACLHVTDGETGLREALSGRQ-DLAILDVMLPEKSG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +R +D+ V L D + G GA+ ++ KPF L +R + + Sbjct: 65 FDVLREIRAR---SDLPVLMLTARGDPVDRVVGLELGADDYIPKPFLPRELAARVRAVLR 121 Query: 120 MQKSKDEN 127 K+E+ Sbjct: 122 RTDRKEED 129 >gi|299147659|ref|ZP_07040723.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298514446|gb|EFI38331.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1343 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + + + +A +E P+ ++ D M + Sbjct: 1078 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDLVISDIMMPEMSG 1135 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L D + M+ G GA++++ +PF+ L+ ++ L Sbjct: 1136 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITRPFSVGILKATIKNLLA 1195 Query: 120 MQKSKDE 126 + + Sbjct: 1196 NRALLRQ 1202 >gi|331663726|ref|ZP_08364636.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA143] gi|284922212|emb|CBG35294.1| acetoacetate metabolism regulator (two-component system response regulator) [Escherichia coli 042] gi|331059525|gb|EGI31502.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA143] Length = 461 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|237711465|ref|ZP_04541946.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] gi|229454160|gb|EEO59881.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] Length = 1357 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + +R LF + V+EA + E + +P+ ++ D M Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGVDVAIS-KIPDLIISDIMMPVKDG 1162 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ + + L + + ++ ++ G + +++KPFN E L+ +R L Sbjct: 1163 FTCCRELREQLRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1223 QRERLKR 1229 >gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08] gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07] gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08] gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L+VD +R + + G+ V +A EA + +KE + +V+D M + Sbjct: 1 MKNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKEN-IHLMVLDIMMPKM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 VR+ ++ + L + + I G GA+ +L KPFN L ++ L Sbjct: 60 DGIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSL 116 Query: 118 PQM 120 + Sbjct: 117 IRR 119 >gi|222082591|ref|YP_002541956.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727270|gb|ACM30359.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 240 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 5/128 (3%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R + G V A E R+ + +V+D M Sbjct: 1 MQRTPHVLVVDDHKEIRDLLAKYLAKNGLRVSTANGGAEMRQQLRTAT-IDLVVLDIMMP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 G + R + + V + L D I G GA+ ++ KPFN L +R L Sbjct: 60 GEDGL-SLCRSLRQTSMVPIVLLTAVSDETDRIIGLELGADDYVTKPFNPRELLARIRAL 118 Query: 118 PQMQKSKD 125 + + Sbjct: 119 LRRANATA 126 >gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family [Chloroherpeton thalassium ATCC 35110] gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family [Chloroherpeton thalassium ATCC 35110] Length = 239 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 48/131 (36%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + + +D G A E+ + +++D + + Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNY-DVIILDMMLPKLDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V + L + + + AGA+ ++ KPF+ L + + Sbjct: 63 LEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRY 122 Query: 122 KSKDENQFLDA 132 + + E F+++ Sbjct: 123 RPEKEPSFINS 133 >gi|139439532|ref|ZP_01772964.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC 25986] gi|133775085|gb|EBA38905.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC 25986] Length = 259 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + G+ V A A + E + +++D + Sbjct: 1 MARILIVEDEEKIARFVTLELEHEGYQVEHAADGRTAVDLAL-ERNYDLILLDVLLPQLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + VR+ DV V + +AG AGA+ +L KPF E L +R Sbjct: 60 GMEVLRRVRKH---KDVPVIMVTARDAVMDKVAGLDAGADDYLTKPFAIEELFARIRVAL 116 Query: 119 QMQKSKD 125 + ++ Sbjct: 117 KRSEAVR 123 >gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] Length = 227 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 234 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ R GF+V A + + + +E + +++D + G+ Sbjct: 1 MKKVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEY-DLILLDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R++ D V + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GF-EVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGR 118 Query: 121 QK 122 + Sbjct: 119 YE 120 >gi|302386981|ref|YP_003822803.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197609|gb|ADL05180.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 237 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R+V R + G+ V+EA + +A + + +++D M G Sbjct: 5 QQILVVDDDADIREVLRIQLENKGYSVWEAVNGNDAVAAVSENPDIDLIILDIMMPGLSG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +R++ T V +L + A G + +L+KPF++ L +R L + Sbjct: 65 IDACTQIRKI---TSAPVLFLTAKSKESDKTAAYENGGDDYLVKPFSQAELLMKVRSLLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D +R++ + GF + +A EA E E + V+D M Sbjct: 1 MIQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKME-EFRIDLAVVDIMMPFKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +++ D+ V + + + G G + +++KPF+ + + ++ L Sbjct: 60 GWELTKEIKE---YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALL 116 Query: 119 QMQKSKDEN 127 + + + N Sbjct: 117 RRYRVEANN 125 >gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 226 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R++ R + G V EA + +A E E + + +++D M + Sbjct: 1 MAKILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKV-DMVILDIMMPEM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R D+ + L + + +++ G G + +L+KPF L ++ L Sbjct: 60 DGWDLCRELR---RYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKAL 116 Query: 118 PQMQK 122 + + Sbjct: 117 LKRYQ 121 >gi|209525938|ref|ZP_03274472.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209493615|gb|EDZ93936.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 369 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +R+ L F V A + E K LP+ ++ D M Sbjct: 1 MAKVLVIEDEETIRENLVELLEIEDFDVISAENGKLGVEQAHKH-LPDLILCDVMMPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + +L + D + + G GA+ +L KP + E L A+ Sbjct: 60 GYGVLKELRSHMETATIPFIFLTAKADRDDLREGMNLGADDYLTKPCSMEELLTAIAIRL 119 Query: 119 QMQKSKDENQFLD 131 + Q + + Sbjct: 120 EKQSLIKQQSEIQ 132 >gi|33861262|ref|NP_892823.1| two-component response regulator, phosphate [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639994|emb|CAE19164.1| two-component response regulator, phosphate [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 242 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEG-- 58 +LL++ +R GF V A +F E + +++D + G Sbjct: 13 KILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDFILGEGIKDFDLILLDLMLPGLN 72 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R L + L + + + G GA+ +L KPF L R L Sbjct: 73 GLELCRKIRNEELY--TPILILSAKGNESDRVLGLEVGADDYLTKPFGISELIARCRALL 130 Query: 119 QM-QKSKDENQFLDAI 133 + ++ K++ Q ++ I Sbjct: 131 RRSKRGKEKKQKIETI 146 >gi|320105191|ref|YP_004180782.1| response regulator receiver protein [Isosphaera pallida ATCC 43644] gi|319752473|gb|ADV64233.1| response regulator receiver protein [Isosphaera pallida ATCC 43644] Length = 145 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ S V ++ D GF V AT A + ++E P+ +V+D + + F Sbjct: 4 TILIVEDSPTVLRMASAALEDGGFRVLTATDGEAALQLVKREK-PDLIVLDIILPKINGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ P + + L + G R GA+ +L KPF E L + L Sbjct: 63 QVCRHLKNDPASRHIKILLLSSKSGESDRYWGLRQGADDYLTKPFEPEGLVSTVTRLLNR 122 >gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 223 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + +V + V +A ++ + ++ D M Sbjct: 1 MK-ILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEY-DLIITDIMMPKID 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E I +R G V L + + I G +GA+ +++KPF + L +R L Sbjct: 59 GYELIKQLRV--KGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLM 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M LL+VD + + R + G+ V ATS +A + E P+ +V+D + G+ Sbjct: 1 MKAHLLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKR-TLERAPDLIVLDVMLPGL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R G +V + L + G GA+ +++KPF E L ++ L + Sbjct: 60 NGLEVVQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLR 119 Query: 120 MQKSKD 125 + + Sbjct: 120 RNQVER 125 >gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + +D F V A + E + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DVILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|168699248|ref|ZP_02731525.1| response regulator receiver domain protein (CheY-like) [Gemmata obscuriglobus UQM 2246] Length = 406 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + R + GF EA + EA + + + ++ D M Sbjct: 161 KRILVVEDNDANRVMLCRRLGSRGFQTVEAANGREALDAVRRAP-FDLVLCDIMMPEVDG 219 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + V + + +++ GA +L KP++ L + Sbjct: 220 YEVLRQLKADQNLQSLPVIMVSAIDETAEVVRCIEMGAEDYLHKPYDPVLLHARVNACLD 279 Query: 120 MQKSKDEN 127 ++ +D+ Sbjct: 280 KKRLRDQE 287 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + R++ R G+ V A + A E P+ +++D + + Sbjct: 1 MPHVLLVEDEQVNREMFRRRLERKGYTVLPADTGLGAVALARSE-RPDVILMDLGLPDID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + + L F+ AG F KP N + L + E Sbjct: 60 GWEATRRLKADPATAPIPIIVLSAHATFDAKDKAFAAGCQDFETKPVNWDALYRKLDEWL 119 Query: 119 QMQK 122 + Sbjct: 120 AKGR 123 >gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 230 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V + + EA + E N +++D M + F Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSE-QFNLILMDIMMPKLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ T++ + +L + + I G +G + ++ KPF+ L + + + Sbjct: 63 -EAIKRIRRLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119 >gi|146342541|ref|YP_001207589.1| OmpR family two component response transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195347|emb|CAL79372.1| putative two component response transcriptional regulator (OmpR family) [Bradyrhizobium sp. ORS278] Length = 246 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ R + + V AT E + + L++D + G Sbjct: 8 ILVVEDDRETRTLIAKYLRNNACNVTTATDGRE-MTRIMGDHRIDLLILDVMLPGEDGLT 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R++ + V + L + I G GA+ +L KPFN L + + + Q + Sbjct: 67 LC-RKLRAESQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQAA 125 >gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 254 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 33 NILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 91 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 92 DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 Query: 121 QK 122 + Sbjct: 149 YQ 150 >gi|299066501|emb|CBJ37691.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum CMR15] Length = 230 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 8 DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAH 65 + + ++ G A + +A ++LP+ +++D + G F Sbjct: 2 EDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGVMFAKE 60 Query: 66 VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 +R + + L + + I G GA+ ++ KPF+ + L ++ + + + + Sbjct: 61 LRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRAPQ 119 >gi|282878424|ref|ZP_06287210.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] gi|281299410|gb|EFA91793.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] Length = 231 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 8/131 (6%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +L+VD + ++ + G++V A S EA N L++D M Sbjct: 1 MKENKYRILVVDDEQDLCEILKFNLETEGYVVETANSAEEA--MMMDISSFNLLLLDVMM 58 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + F +++ P + + +L + G GA+ ++ KPF+ + + Sbjct: 59 GEMSGFSMAKKLKENPKTASIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRI 118 Query: 115 RELPQMQKSKD 125 R + + D Sbjct: 119 RAVIRRTNETD 129 >gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 210 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + R G+ V A + A E + +P+ ++ D M + Sbjct: 5 KRLLLIDDDPNLILLVRDYLGFRGYDVLTAENGRTALGVLE-QDIPDMIICDVMMPEMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ VRQ + V V +L + + G GA+ +++KPF E L + + Sbjct: 64 YTFVEQVRQNERTSWVPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 123 Query: 120 MQKSKDENQ 128 E+Q Sbjct: 124 QTSRWKEHQ 132 >gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium intracellulare ATCC 13950] Length = 226 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + + R + G+ V A+S A E P+ +++D + Sbjct: 1 MTRVLVIDDEPQILRALRINLSVRGYEVVTASSGAGAL-RAAAEHKPDVVILDLGLPDIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +A +R V L D + AGA+ ++ KPF + +R Sbjct: 60 GIDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAV 116 Query: 119 QMQKSKDENQF 129 + + E + Sbjct: 117 RRNTAASEVEQ 127 >gi|237721722|ref|ZP_04552203.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448591|gb|EEO54382.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1329 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + + + + V A + EA + E++ + + ++ D M + Sbjct: 1083 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1140 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q + + V L + + E I G GA++++ KPF+ E LR + L Sbjct: 1141 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1200 Query: 121 QKSKDE 126 ++ Sbjct: 1201 RERLRR 1206 >gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603] gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603] Length = 229 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KRILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +K+ + Sbjct: 119 SRKASKK 125 >gi|260642135|ref|ZP_05414654.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623317|gb|EEX46188.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1329 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + + + + V A + EA + E++ + + ++ D M + Sbjct: 1083 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1140 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q + + V L + + E I G GA++++ KPF+ E LR + L Sbjct: 1141 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1200 Query: 121 QKSKDE 126 ++ Sbjct: 1201 RERLRR 1206 >gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 241 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + + GF V A E + + LV+D + G Sbjct: 9 ILVVDDHADIRDLLKRFLEQHGFKVTCARDGKE-MKRLLENGHFTLLVLDLMLPGEDGLT 67 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + + + V L + I G GA+ +L KPFN L +R + + Sbjct: 68 LC-RDLRARSSLPVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRAVLRRANL 126 Query: 124 KDENQ 128 ++Q Sbjct: 127 MPDSQ 131 >gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 510 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 6/134 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD + ++ GF V S +A + P+ +++D M + F Sbjct: 8 ILLVDDTVANLQLVSDFLMKAGFNVLAVKSGIQALKIV-AITEPDLILLDVVMPEMDGFE 66 Query: 63 -IAHVRQMPLGTDVFVYYLLM---EVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ D+ V ++ + I G + GA ++ KP E + ++ Sbjct: 67 VCRRLKAQEETQDIPVIFMTAVADRANPSYKIKGLKLGAVDYISKPIQLEEVLLRVQTHL 126 Query: 119 QMQKSKDENQFLDA 132 Q++ + +A Sbjct: 127 QLRALTQQLTEQNA 140 >gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLVD + + H+ + G+ V + E + L++D + Sbjct: 1 MK-ILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSY-DLLILDWMLPNKP 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R G V +L + + G AGA+ +L+KPF L +R L Sbjct: 59 GIEICQALRSQ--GNTTPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC 7002] gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC 7002] Length = 258 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD VR++ + + G+ + A EA + +E P+ +++D M Sbjct: 15 TILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWRED-PDLVILDVMMPKRDGY 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L D I G R GA+ +L+KPF+ + L ++ + + Sbjct: 74 YVCQEIRRESS---TPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRR 130 Query: 121 QK 122 + Sbjct: 131 TQ 132 >gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 229 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M LL+V+ +R+ + + V E EA + +E + ++D + Sbjct: 1 MK-LLVVEDDPDLRRQLVTALENKNYTVEETADGEEAL-YLGQEYPYDLAIVDLGLPKLS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E I R G + + L D++ + G AGA+ +L+KPF+ E L+ + L Sbjct: 59 GIEVIRQWR--DDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|134299848|ref|YP_001113344.1| two component sigma-54 specific Fis family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052548|gb|ABO50519.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum reducens MI-1] Length = 454 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L++D + G+ VF +T + KE P+ +++D M + Sbjct: 5 NKILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKET-PSLVILDLKMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+ L + + + + I + GA ++ KPF+ + L+ +R+ + Sbjct: 64 LEVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVN 123 Query: 122 KSKDENQFLDA 132 ++E FL + Sbjct: 124 HLQEEVTFLRS 134 >gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL 1112] gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC] gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL 1112] gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC] gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL 1118] Length = 228 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +D+ + + + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 + + +++ Sbjct: 119 SQKQVKDE 126 >gi|307324561|ref|ZP_07603768.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306889805|gb|EFN20784.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 257 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ ++R+ +G+ V A + L++D + G + Sbjct: 15 TVLLVEDDEVIRRSVGMALERYGYRVSTAGDGLTGLALFRAGGH-DLLLLDVMLPGLDGI 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + D +I+G AGA+ +++KP + L +R L + Sbjct: 74 GLCRRIRETSMD---PILMMSARGDDLDVISGLEAGADDYVVKPVDTAVLVARIRSLLRR 130 >gi|270157584|ref|ZP_06186241.1| response regulator TutC [Legionella longbeachae D-4968] gi|289164037|ref|YP_003454175.1| sensor histidine kinase [Legionella longbeachae NSW150] gi|269989609|gb|EEZ95863.1| response regulator TutC [Legionella longbeachae D-4968] gi|288857210|emb|CBJ11031.1| putative sensor histidine kinase [Legionella longbeachae NSW150] Length = 806 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+V+ + + + + + + + A E E E LP+ ++ D M + +E Sbjct: 458 VLIVEDNPAMNEFLCEILSKE-YRIICAHDGKEGLEKAI-EFLPHVIISDIMMPDMNGIE 515 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R+ + + + D + + + GA ++ KPF+ + L+ + L ++ Sbjct: 516 MVHAIRKHSSLLSTPIMIVTAKADDDLRVRILQEGAQDYMTKPFSAQELKARIANLVLVK 575 Query: 122 KSKDENQF 129 ++DE + Sbjct: 576 NAEDELER 583 >gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme DSM 15981] gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme DSM 15981] Length = 233 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 54/134 (40%), Gaps = 4/134 (2%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ ++ + G+ A + +A + P+ +++D + Sbjct: 1 MNKPEILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQ-QPDIMLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + ++ + + + + + I AGA+ +L KPF+ E L +R Sbjct: 60 MDGV-QVIAKVRTWSQMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATL 118 Query: 119 QMQKSKDENQFLDA 132 + + + +++ Sbjct: 119 RRLQYLSASAEMES 132 >gi|254468934|ref|ZP_05082340.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] gi|207087744|gb|EDZ65027.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] Length = 237 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++++D +R + + D GF + + ++ P+ +++D + Sbjct: 3 KKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKD-LDKILQKATPDLIILDLMLPDENG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ +R + + + L + D I G GA+ +L KPFN L + + + Sbjct: 62 LDICKRLRVNKI--KIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFR 119 Query: 120 MQKSK 124 + + Sbjct: 120 RHEME 124 >gi|162452271|ref|YP_001614638.1| hypothetical protein sce3998 [Sorangium cellulosum 'So ce 56'] gi|161162853|emb|CAN94158.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 584 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD S R V + + G+ A A +E + +++D +M G L Sbjct: 114 TILVVDDSRGNRDVLCRVLQNNGYRTASAEDGPRALGLAARE-RFDAVLLDVNMPGISGL 172 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +RQ ++ V + E ++ + GAN + KP + + L + + Sbjct: 173 GVLSALRQSRSQAELPVIMVTTRGASEDVVESLKLGANDHVTKPIDFDILLGRLDTQLTL 232 Query: 121 QKSKDENQFLDA 132 ++S+++ L A Sbjct: 233 KRSREQLSQLAA 244 >gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L+VD +R + + G+ VF+A+ EA + EKE + +V+D M + Sbjct: 1 MNNILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEE-IHLIVLDIMMPHMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++ + L + + I G GA+ ++ KPFN+ L ++ L + Sbjct: 60 GLEVCRRVREKY-NIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRR 118 >gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 226 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD ++ +L + G+ VF A + E+ P+ +++D M Sbjct: 2 NILVVDDDIPSARMTSYLLEEAGYRVFRAHDASNILQLIEQHN-PDLILLDVMMPKIDGF 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +D+ + +L + + G + G + +L+KPF L + + + Sbjct: 61 EVCRQIRRN---SDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRR 117 Query: 121 QKS 123 + + Sbjct: 118 RNA 120 >gi|260428849|ref|ZP_05782826.1| response regulator receiver modulated serine phosphatase [Citreicella sp. SE45] gi|260419472|gb|EEX12725.1| response regulator receiver modulated serine phosphatase [Citreicella sp. SE45] Length = 415 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S + K+ + +GF V EA+S +A E C ++P+ ++ D M G+ Sbjct: 19 QRVLVVDDSPVQLKILCAVMRRWGFKVLEASSGEQALEICRT-MVPDAVLSDWMMPGMDG 77 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F R++ + + L + + E++ G AGA+ FL KP N LR + + Sbjct: 78 LEFCRQFRELKRDSYGYFILLTSKGEKEEIARGLDAGADDFLTKPVNSYELRARINAGAR 137 Query: 120 MQKSKDEN 127 + + + Sbjct: 138 ILSMQRQL 145 >gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] Length = 229 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1] gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 234 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + G+ VF+A + E + ++E + +++D M G+ Sbjct: 5 NILVVDDEKEIADLVEIYLVSDGYRVFKAENAKEGLDILDREN-IHLVLLDIMMPGMDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++ + L I G GA+ +++KPFN L ++ + Sbjct: 64 EMC-RKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 >gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] Length = 225 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + G+ E E C E + +++D ++ G+ Sbjct: 3 ILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENY-DLILLDLNLPGIDGLD 61 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + V L E + G GAN +L KPF+ E L +R L + + Sbjct: 62 ILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRFI 121 Query: 124 KD 125 ++ Sbjct: 122 QE 123 >gi|94500213|ref|ZP_01306747.1| two component system response regulatory protein [Oceanobacter sp. RED65] gi|94427786|gb|EAT12762.1| two component system response regulatory protein [Oceanobacter sp. RED65] Length = 227 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M LLLVD + + + GF V A +A + +E P+ +V+D M Sbjct: 1 MSRLLLVDDDQALNSLLTEYLSQEGFEVINAYDGKQALDSLTQE--PDLMVLDVMMPELN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ + + + L + D I G GA+ +L KP N L + + Sbjct: 59 GIEVLKQLRQKDI--QLPILMLTAKGDDLDRILGLELGADDYLAKPCNPRELLARINAIL 116 Query: 119 QMQK 122 + Sbjct: 117 RRSH 120 >gi|78356986|ref|YP_388435.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219391|gb|ABB38740.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 647 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 3/124 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ + I R++ + L G V A EA E + + +D M + Sbjct: 292 TSVLVVEDNKINRQIAKELLEGVGVRVTLAGDGLEALALVE-NYDFDLIFMDIQMPRMDG 350 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ+ V + RAG N + KP + + L A+ + Sbjct: 351 LEACRRIRQLQHKKQPPVVAMTAHALAGDRETSLRAGMNDHITKPIDPDELYAALANWIK 410 Query: 120 MQKS 123 + Sbjct: 411 RNHA 414 Score = 91.8 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGVL 60 +L+ D + R + + + F V A S EA + +K P +++D M G+ Sbjct: 145 TRVLVADDNFTSRAILKEVLESLRFDVTLAESGEEAVDLVQKTAEPFKVVLLDWRMPGLD 204 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 H+RQ+ L + + E + + LLKP R L + + Sbjct: 205 GLACARHIRQLDLPVRPTILIITAYGREEVLGEIPSEIIDGVLLKPVARSLLLNTILDAL 264 Query: 119 QMQKSKDENQ 128 S+ E + Sbjct: 265 PEYSSRPEQE 274 >gi|32475887|ref|NP_868881.1| two-component system response regulator [Rhodopirellula baltica SH 1] gi|32446430|emb|CAD76258.1| two-component system response regulator [Rhodopirellula baltica SH 1] Length = 239 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+ + R L G+ V A + + + +D M Sbjct: 1 MPRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSA-SKMIESKKFDLVCLDVMMPMKS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R V ++ + D + G GA+ ++ KPF + ++ + Sbjct: 60 GFDVCRLLRAED--HRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVL 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA] gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA] Length = 231 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 7/123 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + + GF V + + EA + C + + ++D + + Sbjct: 1 MKKQILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMD-CIRTTRLDLAILDIMLPDI 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R+ V L +V+ I G GA+ ++LKPFN + ++ Sbjct: 60 DGFTICQKIREKYFY---PVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQ 116 Query: 118 PQM 120 + Sbjct: 117 LRR 119 >gi|327405174|ref|YP_004346012.1| Crp/Fnr family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320682|gb|AEA45174.1| transcriptional regulator, Crp/Fnr family [Fluviicola taffensis DSM 16823] Length = 352 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + +R+ + + V A + E KE P+ ++ D M + Sbjct: 1 MKKILLIEDNIDIRENTAEILELAQYEVITAENGKEGVRLAIKET-PDLIICDIMMPVLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + + +L + + + G GA+ +L KPF+ + L A+ Sbjct: 60 GHGVLHLLSKNEETAGIPFIFLTAKAERSDVRKGMAMGADDYLTKPFDDQELMNAIETRL 119 Query: 119 QMQKSKDE 126 Q + Sbjct: 120 NKQDLLKK 127 >gi|320333043|ref|YP_004169754.1| multi-sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] gi|319754332|gb|ADV66089.1| multi-sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] Length = 1349 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL D + +R L +D + V T +A + P+ ++ D M + F Sbjct: 622 VLLADDNADLRAYVTRLLDDT-YEVHAVTDGEQAVTAA-HDRTPDLVLSDVMMPNLDGFG 679 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R V V L E + G AGA+ +L+KPF+ LR + ++ Sbjct: 680 VLRALRADERTHAVPVILLSARAGEEARLDGLEAGADDYLVKPFSARELRSRVHTHLELA 739 Query: 122 KSK 124 + + Sbjct: 740 RLR 742 >gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D +R++ + GF + +A EA E E + V+D M Sbjct: 1 MIQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKME-EFRIDLAVVDIMMPFKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +++ D+ V + + + G G + +++KPF+ + + ++ L Sbjct: 60 GWELTKEIKE---YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALL 116 Query: 119 QMQKSKDEN 127 + + + N Sbjct: 117 RRYRVEANN 125 >gi|218129748|ref|ZP_03458552.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697] gi|217987858|gb|EEC54183.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697] Length = 1362 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 1 MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M +L+V+ ++ + +D + V ++ EA + ++ P+ + D Sbjct: 1104 MKSKTRLRVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDT-PDLAISDVM 1161 Query: 56 MEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 M + ++Q V V L + E + G GA+++++KPFN E L+ Sbjct: 1162 MPEMDGLTLCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKT 1221 Query: 114 MRELPQMQKSKD 125 + L ++ Sbjct: 1222 IANLINNRRLLR 1233 >gi|215487439|ref|YP_002329870.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli O127:H6 str. E2348/69] gi|215265511|emb|CAS09913.1| fused response regulator of ato operon, in two-component system with AtoS [Escherichia coli O127:H6 str. E2348/69] Length = 461 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|170695744|ref|ZP_02886886.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170139349|gb|EDT07535.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 247 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +VR++ GF V A + ++ P +V+D M + Sbjct: 3 QSILVVDDDPVVRELVSQYLEGRGFKVATLEHGM-ALQRKLQDERPALVVLDIMMPELDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V L D + G GA+ +L KPF L +R + + + Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 Query: 122 KS 123 S Sbjct: 122 GS 123 >gi|154504471|ref|ZP_02041209.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149] gi|153795246|gb|EDN77666.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149] Length = 234 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L V+ VR + + A + +A + P+ +++D + Sbjct: 1 MNKPLILAVEDDTAVRNLITTTLETQDYRFHTAANGAQAILEAASQK-PDIMLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++++ +++ + + + I AGA+ +L KPF+ E L +R + Sbjct: 60 MDGV-EVIKKIRSWSNLPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVIL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|119386151|ref|YP_917206.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376746|gb|ABL71510.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 239 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 1/132 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD +R + R GF V A E + P+ +V+D + Sbjct: 1 MNHILIVDDDPEIRNLLRRYLEGQGFRVSTAADRRECEARV-TDGAPDLIVLDVMLPDGS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + L + I G GA+ +L KPFN L ++ + + Sbjct: 60 GLDICRSLHEHRPELRIILLTALKEDVDRIIGLELGADDYLGKPFNPRELVARIKAVLRR 119 Query: 121 QKSKDENQFLDA 132 +DE +A Sbjct: 120 TGGQDEPAAAEA 131 >gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 244 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + ++ G V + E +V+D + G+ Sbjct: 1 MHRILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEH-ALVVLDVMLPGIS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R++ G+ V V L D I G GA+ +L KPFN L +R + + Sbjct: 60 GF-EVLRRIRAGSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAIQRR 118 Query: 121 QKSKDENQ 128 + E + Sbjct: 119 AQPSVERE 126 >gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 231 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+++ +R+V G V EA S E E + +++D + G Sbjct: 9 RSVLIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARL-AERPYDIVLLDLVLPGRSG 67 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R++ + V + D +IAG AGA+ ++ KPF E L +R L + Sbjct: 68 LEVCREIRRV---STTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALAR 124 Query: 120 M 120 Sbjct: 125 R 125 >gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 238 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ I+R + F + V A EA P+ +++D + Sbjct: 5 RILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAK-TDSFQPHLILLDVMLPKKSGF 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + + L + + +AG GA+ ++ KPF+ L ++ + Sbjct: 64 EVCRIIRK--KHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRR 121 Query: 121 QKSKDE 126 + + Sbjct: 122 IDLQTQ 127 >gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 228 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTQQTI 132 >gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 225 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A E E+ + ++D M + F Sbjct: 4 KILIVDDDPHIRELVSVFLEKEGFQTYEAVDGLDALRRIE-EVKVDMAILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + I G G + +L+KPF+ L ++ L + Sbjct: 63 DLCYELRK---YYDMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|255035362|ref|YP_003085983.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948118|gb|ACT92818.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1378 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 5/133 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +LLV+ + R+ + +F + + EA + E E +P+ +V D M + Sbjct: 1128 VLLVEDNDEFREYLKEVFQK-DYRIIEAANGKIGLEMAL-EHVPDLIVSDVMMPEMDGTE 1185 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QM 120 ++ + + V L + E+ + G + GA++++ KPF + L+ + L Q Sbjct: 1186 LCRTIKTDRRISHIPVVLLTARAEEEQQLQGYQTGADAYVTKPFRLDILQVRIANLISQR 1245 Query: 121 QKSKDENQFLDAI 133 ++ + + Q AI Sbjct: 1246 EQLQKQFQQHIAI 1258 >gi|16330036|ref|NP_440764.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1652523|dbj|BAA17444.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 234 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++LLVD + + + G + A + L++D + Sbjct: 1 MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQY-DLLILDWMLPQVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + G V +L + + +AG AG + +L+KPF L +R L Sbjct: 60 GLEICRQIRIL--GHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALL 117 Query: 119 QMQ 121 + Q Sbjct: 118 RRQ 120 >gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA] gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA] Length = 231 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L+VD + + + F+V++ EA F EKE L + ++D M Sbjct: 1 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEEL-DLALLDIMMPKI 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 LE +R+ + L + I G GA+ ++ KPF + ++ Sbjct: 60 SGLELCKKIRERYNY---PIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQ 116 Query: 118 PQMQK 122 + K Sbjct: 117 LRRYK 121 >gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 227 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R + + N+ F A S EA + +E + +++D M Sbjct: 1 MTTVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVREN-IDLVLLDVMMPHED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R M ++V + +L E + G G + +++KPF + L + + Sbjct: 60 GFVVCQSIRAM---SNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVL 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRSGA 121 >gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 226 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+V+ +R+ G+ V A + + +V+D ++ + Sbjct: 1 MK-LLVVEDEQDLRESIAEGLRLSGYAVDTAADGAAGEDMLAAGNY-DLVVLDINLPYLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + ++ V L D + ++ G GAN +L+KPF+ L +R L + Sbjct: 59 GFTLLERLRAVNKEIRVIILTARTDIDDLVRGLDTGANDYLVKPFHFVELEARIRSLLRR 118 Query: 121 QKSKDEN 127 ++ +++ Sbjct: 119 RQVQEDL 125 >gi|166032523|ref|ZP_02235352.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC 27755] gi|166026880|gb|EDR45637.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC 27755] Length = 235 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R+ G++VF+A E E EKE + ++D M + Sbjct: 3 MNHVLIVEDDKEIREGVEIYLKSQGYVVFQAADGVEGLEVIEKEE-IHLAIVDVMMPRMD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ D V +L + + I G GA+ ++ KPF L + + Sbjct: 62 GIQMTVKLREKY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPLELLARVNSQLRR 120 Query: 121 QK 122 + Sbjct: 121 YR 122 >gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W] gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W] gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 229 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|21229109|ref|NP_635031.1| putative transcriptional regulator [Methanosarcina mazei Go1] gi|20907666|gb|AAM32703.1| putative transcriptional regulator [Methanosarcina mazei Go1] Length = 292 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD ++ + VF A EA +KE P+ +++D M Sbjct: 16 KVLIVDDMRENVELMEAYLAVEPYKVFCAYGGKEALRIVDKEK-PDIVLLDVMMPEVNGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ P + V L + E I G GA+ FL KP NR L+ ++ L ++ Sbjct: 75 EVCKILKENPETQFIPVLMLTALSELEDRIKGIEVGADDFLTKPINRLELKTRVKSLLRV 134 Query: 121 QKSKDEN 127 + D Sbjct: 135 KYLHDRL 141 >gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 262 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 52/133 (39%), Gaps = 10/133 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ +R+ + G+ V+ +A ++ + + +++D + Sbjct: 32 RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91 Query: 57 E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 L+ +R G + + + + + + G GA+ ++ KPF+ + L Sbjct: 92 PQVNGLDVCRSLR--FGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149 Query: 115 RELPQMQKSKDEN 127 R + + Q N Sbjct: 150 RAMIRRQGLAGNN 162 >gi|119715983|ref|YP_922948.1| response regulator receiver [Nocardioides sp. JS614] gi|119536644|gb|ABL81261.1| response regulator receiver [Nocardioides sp. JS614] Length = 123 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+ D +R++ + G V + A E C+ + P+ V+D M G Sbjct: 1 MARILVADDDVDIRELVEFKLSTLGHDVVAVSDGAAAIEACQAQ-RPDLAVLDVMMPGVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ I +R P D+ V L + G +GA+ ++ KPF+ L ++ L Sbjct: 60 GLDAIRAIRADPALADLPVILLTARAQESDVETGFDSGADDYITKPFSPRELASRVQALL 119 Query: 119 QM 120 Sbjct: 120 TR 121 >gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 230 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + + G V + + LV+D + G Sbjct: 1 MARILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGH-DLLVLDVMLPGVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R+ P V L + + G GA+ +L KPF+ L +R L Sbjct: 60 GFEIVERLRRRPGYPR--VLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALL 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|256821452|ref|YP_003145415.1| response regulator receiver protein [Kangiella koreensis DSM 16069] gi|256794991|gb|ACV25647.1| response regulator receiver protein [Kangiella koreensis DSM 16069] Length = 121 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD S + + G V A + P+ +++D M G+ Sbjct: 1 MARVLIVDDSPTEAHILTGMLEKNGHQVITAPDGESGIVSAKANH-PDVILMDVVMPGLN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++ P + + + + + + G R GAN ++ KP + +L ++ + Sbjct: 60 GFQATRQLKKDPATSSIPIIIVSTKSQATDRVWGMRQGANDYITKPVDEASLLESVNNVL 119 >gi|291087886|ref|ZP_06572149.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291073605|gb|EFE10969.1| regulatory protein VanR [Clostridium sp. M62/1] Length = 251 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ +R+ G+ VF+A E EKE + ++D M + Sbjct: 16 ILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVIEKEE-IHLAIVDIMMPRMDGIT 74 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ D V +L + + I G GA+ ++ KPF L + + + Sbjct: 75 MVIKLREQY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYR 132 >gi|170767484|ref|ZP_02901937.1| sigma-54 dependent response regulator AtoC [Escherichia albertii TW07627] gi|170123818|gb|EDS92749.1| sigma-54 dependent response regulator AtoC [Escherichia albertii TW07627] Length = 461 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGHTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T + V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRIPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|53712868|ref|YP_098860.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60681087|ref|YP_211231.1| putative two-component response regulator [Bacteroides fragilis NCTC 9343] gi|253563148|ref|ZP_04840605.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|265762967|ref|ZP_06091535.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|52215733|dbj|BAD48326.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60492521|emb|CAH07292.1| putative two-component response regulator [Bacteroides fragilis NCTC 9343] gi|251946924|gb|EES87206.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|263255575|gb|EEZ26921.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|301162575|emb|CBW22122.1| putative two-component response regulator [Bacteroides fragilis 638R] Length = 229 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 55/133 (41%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMNISSY--HLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + D + + + Sbjct: 123 TATSDTEKAPEQL 135 >gi|186682679|ref|YP_001865875.1| response regulator receiver modulated diguanylate cyclase [Nostoc punctiforme PCC 73102] gi|186465131|gb|ACC80932.1| response regulator receiver modulated diguanylate cyclase [Nostoc punctiforme PCC 73102] Length = 322 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 10/139 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R + RH G+ + EA + EA +L P+ +++D M + F Sbjct: 12 VLIVDDEPFIRMILRHFLEREGYKIAEAQNGREALTAF-NQLHPDIILLDAIMPDMDGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H+ + V + D E + GA ++ KP + LR ++ L + Sbjct: 71 CCTHLELLDCSKHTPVLMITGLEDQESVDRAFAVGAMDYITKPIHWPVLRQRVKRLIEQS 130 Query: 122 KSKD-------ENQFLDAI 133 + + E Q L I Sbjct: 131 QLQQKLEAVNLELQRLATI 149 >gi|284054182|ref|ZP_06384392.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira platensis str. Paraca] Length = 488 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + + + G+ V EA A + LP+ +++D M + Sbjct: 2 LIVDDTPGNLHLLSRILSKKGYKVREAIDGKTALQEV-NNKLPDLILLDIMMPDIDGYAV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ P +V + +L D + G ++ KPF + + ++ +++ Sbjct: 61 CNQLKSEPYTAEVPIIFLSALDDIFDKVKAFEVGGVDYISKPFQFQEVLIRVKNQLTLRR 120 Query: 123 SKDENQFLD 131 ++ + Q L+ Sbjct: 121 TQQQLQVLN 129 >gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF V A +A E +E P+ +V+D M F Sbjct: 8 KVLVVDDEPNIRELLSEALELNGFAVRTAADGRQALEAVARE-RPDIIVLDVMMPAPDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + +L + IAG AG + ++ KPF+ E + +R + + + Sbjct: 67 TVARKLREAGDSPLLLFLTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMR 126 Query: 123 SKDEN 127 E Sbjct: 127 PAQEQ 131 >gi|260172793|ref|ZP_05759205.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] gi|315921079|ref|ZP_07917319.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694954|gb|EFS31789.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1330 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+V+ + R + + VF+A + EA E ++ D M + Sbjct: 1081 TSLLIVEDNDDFRNFLINCLKGT-YQVFDAPNGKEALEIL-AHQSIQIVISDVMMPEMDG 1138 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + V L E ++G + GA+ ++ KPFN E L ++++ + Sbjct: 1139 MELCRKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKILK 1198 Query: 120 MQKSKDE 126 K+ E Sbjct: 1199 WTKNNHE 1205 >gi|258625182|ref|ZP_05720098.1| response regulator rpfG [Vibrio mimicus VM603] gi|258582557|gb|EEW07390.1| response regulator rpfG [Vibrio mimicus VM603] Length = 377 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 8/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + R + L + + AT +A C K+ P+ +++D M + Sbjct: 7 TILIVDDNPENRALLAGLLKPH-YRLLVATGGAQALTICHKQK-PDLVLLDIMMPEMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P D+ V +L + E G GA ++ KP + L R ++ Sbjct: 65 EVCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLRL 124 Query: 121 QKS----KDENQFLD 131 +++ ++N+ L+ Sbjct: 125 RQAMKLLAEQNETLE 139 >gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] Length = 229 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 223 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+LL + + + G+ V + +A E + + +V+D + + Sbjct: 1 MTSVLLAEDDTSISEPLARALRREGYTVEVSPDGPQALERALGGGV-DLIVLDLGLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRVRSEGHGVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|255505528|ref|ZP_05346649.3| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] gi|255267413|gb|EET60618.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] Length = 251 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + +R++ + D G+ A EA + +++ + +V D M + Sbjct: 27 MFNILVVEDNADMRELFCTVLADHGYNSIPAADGAEALDIMDRQ-YIDLIVADIMMPNMD 85 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V + + F + G R GA+ +++KP N L + L Sbjct: 86 GYQLTKALR--DANYTLPVLMVTAKDQFIDLQQGFRTGADDYMIKPVNVNELVLRVEALL 143 Query: 119 QMQKSKDENQ 128 + + E + Sbjct: 144 RRARISSEKK 153 >gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V + + + EA + +++ +++++D + G+ Sbjct: 6 KRVLIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQS-FDFVILDLMLPGLSG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV + L +V+ I G GA+ ++ KPF+ + L +R + + Sbjct: 65 EEICNRIRLQ---SDVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMR 121 Query: 120 MQKSK 124 ++ Sbjct: 122 RTSNE 126 >gi|325263737|ref|ZP_08130470.1| phosphate regulon transcriptional regulatory protein PhoB [Clostridium sp. D5] gi|324030775|gb|EGB92057.1| phosphate regulon transcriptional regulatory protein PhoB [Clostridium sp. D5] Length = 298 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + + +G+ V A EA EKE P+ ++D + Sbjct: 1 MSKILVVEDDVASQILMTDILEKYGYNVVVAMDGLEAISLAEKEK-PDLAIVDIMLPTLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +P ++ V L + + I AGA FL KPF R L ++ + Sbjct: 60 GYQVCERLRCLPQCKELPVIILTALNEDQHRIRALEAGAIDFLSKPFKRVELLTKIKAVL 119 Query: 119 QMQK 122 MQ+ Sbjct: 120 LMQE 123 >gi|254883001|ref|ZP_05255711.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319641845|ref|ZP_07996522.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_40A] gi|254835794|gb|EET16103.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317386518|gb|EFV67420.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_40A] Length = 1319 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + R L + + A++ EA + EL+P+ ++ D M + Sbjct: 1070 ILVVDDNQDLLNYLRMLLAPR-YQITCASNGKEALDLL-SELMPDLVISDVMMPVMDGME 1127 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + + V L +V+ + G GA+ ++ KPF+ + ++ + L + Sbjct: 1128 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLLSNR 1187 Query: 122 KSKD 125 + Sbjct: 1188 ERMK 1191 >gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 226 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLLVD + + G+ + S EA ++ + + +++D M + Sbjct: 1 MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHA-DLVLLDVMMPELD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + + ++ G + GA+ ++ KPF+ L + + Sbjct: 60 GWETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|220917497|ref|YP_002492801.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955351|gb|ACL65735.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] Length = 434 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LL+ D R+V + + V A+ EA + E P+ +++D M E Sbjct: 132 LLVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEH-PDLVLLDIGMPRLDGFE 189 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +RQ P D+ V ++ D + GA +L KPF+ LR + ++ Sbjct: 190 VLQRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRLV 249 Query: 122 KSKDENQFLD 131 +S+ + L Sbjct: 250 RSQIALRELA 259 >gi|159026609|emb|CAO86541.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 368 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD ++ + + G+ V +A + A + L+P+ +++D +M + Sbjct: 9 SVLIVDDLPNNVRLLSIMLTEKGYQVRKAINGQMALNTV-RSLIPDLILLDINMPDLNGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ V ++ D + + G ++ KPF E + + + Sbjct: 68 QVCEQLKADEKTREIPVIFISALDDVLDKVKAFQVGGVDYISKPFQGEEVMARIENQLTI 127 Query: 121 QKSKDENQ 128 + K + Q Sbjct: 128 SRQKKQLQ 135 >gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 241 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 6/115 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + +++ EA EA E + +++D + G + Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDY-DVILLDLMLPGKDGI 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 E +R + L + + + G G + +++KPF+ + ++ Sbjct: 68 EVCKEIRAQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119 >gi|116621041|ref|YP_823197.1| two component sigma54-specific Fis family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224203|gb|ABJ82912.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Solibacter usitatus Ellin6076] Length = 450 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 7/133 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R+V GF V +A S E + ++ + ++ D + + Sbjct: 3 KRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRA---DMVLTDLKLPNMDG 59 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F++ +R+ + V V + + E + +AGA FLLKPF+ + L + + + Sbjct: 60 QEFLSLIRRQ--NSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALE 117 Query: 120 MQKSKDENQFLDA 132 ++ ++EN+ L A Sbjct: 118 VRALREENRELKA 130 >gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 235 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ G+ V A A + P+ LV+D M G+ F Sbjct: 9 KVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRT-FKPDILVLDVMMPGMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D +L E + G G + ++ KPF+ E + + L + Sbjct: 68 GLLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRR 125 >gi|323952014|gb|EGB47888.1| response regulator receiver domain-containing protein [Escherichia coli H252] Length = 165 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A ++ P+ +++D + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RDAKPDLVLLDLMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|331647875|ref|ZP_08348967.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M605] gi|281179312|dbj|BAI55642.1| two-component response regulator [Escherichia coli SE15] gi|330912051|gb|EGH40561.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli AA86] gi|331043599|gb|EGI15737.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M605] Length = 461 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|260752397|ref|YP_003225290.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551760|gb|ACV74706.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 241 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++++V+ +R + + + G++ S E E + + + +++D + G Sbjct: 4 QTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTV-DLILMDVMLPGKNG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ +R + V +L D + G G + ++ KPF ++ L +R + + Sbjct: 63 LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122 Query: 120 MQKSKDE 126 ++ E Sbjct: 123 RSQAVKE 129 >gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] Length = 232 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 8/124 (6%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ + L+ D V + G+ V + EA + + +++D M Sbjct: 1 MNRISILIADDEVEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQP-IDLVILDIMMPK 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R + + +L + + G GA+ ++ KPF L + Sbjct: 60 MDGYEVTRQIRAQ---YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|188584894|ref|YP_001916439.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349581|gb|ACB83851.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 239 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R ++ + G+ + A + EA E + + +++D + G+ Sbjct: 3 KKLLIVDDEKNIRMTLKNCLSYEGYELEIALNGEEALEKLRTQDY-DLVLLDLKLPGLNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + G DV V + E+ + + GA F+ KPF+ +R + ++ Sbjct: 62 LQVLEKVRDEGRDVKVIMMTAYGTVERAVNAMKLGAIDFINKPFSPNQIRALVNDVLSRP 121 Query: 122 KSKDEN 127 +EN Sbjct: 122 NLSEEN 127 >gi|327312949|ref|YP_004328386.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein [Prevotella denticola F0289] gi|326946295|gb|AEA22180.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella denticola F0289] Length = 896 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D + +R R + + V EA E + ++P+ +V D M + Sbjct: 655 VLVIDDNSDIRTYLRSALSPM-YKVSEAVDGKSGLELARR-IMPDLVVSDIMMPVMDGLE 712 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++Q P + + V L E+ G GA++++ KPF+ L + L Q + Sbjct: 713 FCRQLKQDPAVSHIPVILLTARSLDEQRAEGYEYGADAYISKPFSLRLLLSRIDNLIQSR 772 Query: 122 KSKDEN 127 K + Sbjct: 773 KKLGQL 778 >gi|323977582|gb|EGB72668.1| sigma-54 interaction domain-containing protein [Escherichia coli TW10509] Length = 461 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T + + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPIILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01] gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus MV-1A-US] gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1] gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01] gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus MV-1A-US] gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1] gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] Length = 228 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTTPDIVLMILDVMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +D+ + + + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-IDVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 + + +N+ Sbjct: 119 SQKQVKNE 126 >gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 269 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A A + +E P+ +V+D + + Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTA-REFRPDAVVLDMMLPDMDGL 102 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 103 AVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 162 Query: 123 SKDENQFLDAI 133 + D + D++ Sbjct: 163 AAD--RRSDSV 171 >gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] Length = 221 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + G++V AT A E +E + +++D + + Sbjct: 3 KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMF-REGNFDLIILDVMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + E + G + ++ KPF+ L + + + Sbjct: 62 FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118 Query: 120 MQKSKDEN 127 +EN Sbjct: 119 RANGLEEN 126 >gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 225 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 4 NILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|332703870|ref|ZP_08423958.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio africanus str. Walvis Bay] gi|332554019|gb|EGJ51063.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio africanus str. Walvis Bay] Length = 459 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R R + D G V EA S + E E + P+ + +D + G+ Sbjct: 4 RILIIDDEESIRFSLRGVLEDEGHEVIEAGSGEQGLEMVENQG-PDLVFLDIWLPGMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + DV V + + E ++ + GA F+ KP + E + + + + K Sbjct: 63 HVLEKVREGQVDVPVIMISGHGNVETAVSAIKKGAFDFIEKPLSLEKVVITVNKALEFGK 122 Query: 123 SKDENQFLDA 132 EN L A Sbjct: 123 LLRENLELRA 132 >gi|264676241|ref|YP_003276147.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533423|ref|ZP_07046805.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262206753|gb|ACY30851.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718629|gb|EFI59604.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 243 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 8/131 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-----LPNYLVIDESMEG 58 LL+++ + ++ + G V E + LP+ +++D + Sbjct: 6 LLMIEDDVRLAQMVSDYLGNNGLEVTHMADGKSGLEQLQPSDGGSVELPDLVILDLMLPD 65 Query: 59 VLEF--IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R MP V V L + D I G GA+ +L KPF L +R Sbjct: 66 MDGLEVCRRIRSMPGTPAQVPVLMLTAKGDPMDRIIGLELGADDYLPKPFEPRELLARIR 125 Query: 116 ELPQMQKSKDE 126 + + + S+ + Sbjct: 126 AILRRKGSESQ 136 >gi|284035960|ref|YP_003385890.1| response regulator receiver sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283815253|gb|ADB37091.1| response regulator receiver sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 365 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 4/130 (3%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M + +LLV+ +R+ L GF V A + E + P+ ++ D M Sbjct: 1 MTTQILLVEDEAQIRENVAELLTLHGFQVETAVNGREGISQALLQ-QPDLILCDIMMPEV 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + VR ++ +L + + + G GA+ +L KPF ++L A+ Sbjct: 60 DGYQVLDVVRNNRSTANIPFIFLTAKTEPADLRRGMVMGADDYLTKPFTFQSLLSAIESR 119 Query: 118 PQMQKSKDEN 127 Q + + + Sbjct: 120 LQREAMRKAD 129 >gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1670 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + ++V R + G V A + +A E E E + +++D M + Sbjct: 1333 KILLVEDNELNQQVARRMLEGMGLDVDVADNGRKALEALESEPY-SLVIMDIQMPEMDGL 1391 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++ + + AG N L KP + E L+ A+ + Sbjct: 1392 TASRIIRSDERYRNLPILAMTAHAMPGDREKSFEAGMNEHLTKPIDPEELKRALVKYL 1449 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPN---YLVIDESME 57 M S L+++ + + R+ R G V ++ A E + + + +++ ++ Sbjct: 1184 MKS-LVIEGNMMAREFIRSTMEKSGITVMVDSTASSALERLAESIDVDGLGLILVSGKIQ 1242 Query: 58 GV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAM 114 + LE + +R MP V + + E A G + F+ +P +R +L A+ Sbjct: 1243 DMHVLEVVERIRNMPKLMHVPIILMSPVNMDESFRKEAALVGVDGFVTRPVSRLSLYAAL 1302 Query: 115 R 115 + Sbjct: 1303 Q 1303 >gi|212213466|ref|YP_002304402.1| two-component response regulator [Coxiella burnetii CbuG_Q212] gi|212011876|gb|ACJ19257.1| two-component response regulator [Coxiella burnetii CbuG_Q212] Length = 245 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + GF A + E + K+ + + +++D M G Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKNGSEMQAILLKQAV-DLVILDIMMPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQM + + + L + I G GA+ +L KPFN L +R + + + Sbjct: 66 LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123 >gi|297538855|ref|YP_003674624.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297258202|gb|ADI30047.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 228 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + ++ + F V A + ++ + +V+D M + Sbjct: 1 MQTVLLIDDDVELVEMLKEYIEQENFSVQVAHDGIAGAQMLLEQP-FDIVVLDVMMPRLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++ + ++V V L + D I G GA+ ++ KP + L +R + + Sbjct: 60 G-IETLKAIRQHSNVPVIMLTAKGDNTDRIVGLELGADDYVPKPSSPRELVARIRAILRR 118 Query: 121 QKSKD 125 + + Sbjct: 119 VQPLE 123 >gi|291569797|dbj|BAI92069.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 372 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L VD S + + D G+ V+ A + E P +++D M G E Sbjct: 15 ILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTIL-EKPPQLVLLDVMMPGIDGYE 73 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P + + + ++ G AGA+ F+ KP + L +R L +++ Sbjct: 74 VTRRIRNNPNLPFIPILLITAHDQ-SSVVEGLDAGADDFIRKPVEIDELLARVRSLLRLK 132 Query: 122 KSKDEN 127 +S DE Sbjct: 133 ESIDEQ 138 >gi|241763478|ref|ZP_04761531.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] gi|241367319|gb|EER61650.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] Length = 376 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD + + L + F V A +A P+ +++D M Sbjct: 20 TVLVVDDTPENLTLMGSLLREH-FQVKVANQGDKALRIALSGTPPDLILLDIMMPEVDGY 78 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ V +L + + AG GA ++ KP + L + + Sbjct: 79 EVCRRLKAHPSTRDIPVIFLTARSEPDDEQAGLALGAVDYITKPISPPILLARVNTHLTL 138 Query: 121 QKSKD 125 + + D Sbjct: 139 KATAD 143 >gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 228 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ + EAT EA E+ + + +++D + + Sbjct: 1 MQRKILIVEDEDILREIVKDYLLNDGYEILEATDGKEALSIFEEHEV-HLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWSVCRRIRK---TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 IESR 120 >gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3] Length = 258 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + + GF +A E + P+ +++D + G+ Sbjct: 35 MKARILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFE-VSQANKPDLVLLDLMLPGM 93 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R +DV + L + D ++ G +GA+ ++ KPF L +R Sbjct: 94 DGIEICRLIRAE---SDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRAR 150 Query: 118 PQ 119 + Sbjct: 151 LR 152 >gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 221 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + G++V AT A E + + +++D + + Sbjct: 3 KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRR-WNFDLIILDVMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + E + G + ++ KPF+ L + + + Sbjct: 62 FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118 Query: 120 MQKSKDEN 127 +EN Sbjct: 119 RANGLEEN 126 >gi|154687436|ref|YP_001422597.1| YvrH1 [Bacillus amyloliquefaciens FZB42] gi|154353287|gb|ABS75366.1| YvrH1 [Bacillus amyloliquefaciens FZB42] Length = 239 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + + + G+ + A S EA EF + E + LV+D MEG+ Sbjct: 5 SILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETA-DLLVLDVMMEGMSG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R TD +++L ++G GA+ ++ KPFN L +R + Sbjct: 64 FEACTEIRN---YTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLK 120 Query: 120 MQKSKDE 126 ++E Sbjct: 121 RTYKREE 127 >gi|150009686|ref|YP_001304429.1| two-component system sensor histidine kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938110|gb|ABR44807.1| two-component system sensor histidine kinase/response regulator, hybrid [Parabacteroides distasonis ATCC 8503] Length = 1369 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL+VD + R+ + + + V A +A + +E LP+ ++ D M + Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1179 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V V L + + + G AGA+ ++ KPFN E L +R L +M Sbjct: 1180 TLCRRIKGDIRTSHVPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1239 Query: 121 QKSKDE 126 +K + Sbjct: 1240 KKKMQK 1245 >gi|83310938|ref|YP_421202.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945779|dbj|BAE50643.1| Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Magnetospirillum magneticum AMB-1] Length = 369 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD S + L + V A S + P+ +++D M Sbjct: 11 TILVVDDSPDDVWLMSELL-KADYRVKVANSGERGLKIAMGNERPDLVLLDVMMPDIDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ D+ V +L + + G GA ++ KPF+ + ++ ++ Sbjct: 70 EVCRQLKTDSRTHDIPVIFLTSKTRMAEEKRGLDMGAVDYITKPFSPSIVLARVKAHLRL 129 Query: 121 QK----SKDENQFLD 131 + +D+N+FL+ Sbjct: 130 KSSADFLRDQNRFLE 144 >gi|110635445|ref|YP_675653.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286429|gb|ABG64488.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 229 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +++V+ + + R+ G+ V T EA E +E +P+ LV+D + + Sbjct: 5 KIMVVEDDEPLCVLLRYNLEAEGYQVEVVTRGDEA-EVRLQENVPDLLVLDWMVPAISGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + + L + + G GA+ +L+KPF+ +R L + Sbjct: 64 ELCRRLKMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFIARVRALLRR 123 Query: 121 QKSK 124 K + Sbjct: 124 AKPE 127 >gi|332344002|gb|AEE57336.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UMNK88] Length = 461 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTQQTI 127 >gi|294138950|ref|YP_003554928.1| chemotaxis protein CheY [Shewanella violacea DSS12] gi|293325419|dbj|BAJ00150.1| chemotaxis protein CheY [Shewanella violacea DSS12] Length = 120 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ GF V EA + EA + ++ + ++ D +M + Sbjct: 1 MKKILAVDDSASMRQMVCFTLKTAGFDVTEACNGDEALKVAQQGEY-DLVISDVNMPIMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++R +P + L E EK G AGA +++KPFN + L +R++ Sbjct: 60 GLTLIRNLRTLPNYKFTPLLMLTTESGTEKKQEGRSAGATGWIVKPFNPDQLLATVRKVL 119 >gi|238650401|ref|YP_002916253.1| response regulator PleD [Rickettsia peacockii str. Rustic] gi|238624499|gb|ACR47205.1| response regulator PleD [Rickettsia peacockii str. Rustic] Length = 450 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GCEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 62.1 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P+ ++I ++E + Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208 Query: 62 FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + V + + E ++ G G N + + P L +R Sbjct: 209 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268 Query: 119 QMQKSKDENQ 128 + ++ +D + Sbjct: 269 RRKQYQDNLR 278 >gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R + + G+ V +A EA + +KE + +++D M + Sbjct: 3 NTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKEN-IHLMILDIMMPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ ++ + L + + I G GA+ +L KPFN L ++ L + Sbjct: 62 IEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|224025799|ref|ZP_03644165.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM 18228] gi|224019035|gb|EEF77033.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM 18228] Length = 903 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + +R R + D + V EA + E + K +P+ ++ D M + Sbjct: 655 TILVIDDNLDIRDYVRSVLQDE-YNVIEAANGQEGLQQAMK-YVPDAIICDVMMPVMDGM 712 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L E+ I G GA+S++ KPF+ L +R L + Sbjct: 713 ECCRRLKSEVQTSHIPVMMLTAYAVDEQKIKGYECGADSYISKPFSARLLTVRLRNLIEN 772 Query: 121 QKSKD 125 ++ Sbjct: 773 RRRLQ 777 >gi|217978047|ref|YP_002362194.1| adenylate/guanylate cyclase [Methylocella silvestris BL2] gi|217503423|gb|ACK50832.1| adenylate/guanylate cyclase [Methylocella silvestris BL2] Length = 403 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L VD ++ G+ + A+ E + P+ +++D M + Sbjct: 22 RILAVDDVAENLEIVVVRLEAHGYEIITASDGEEGLAKARA-IKPDLILLDIMMPKLDGI 80 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ + V L + D ++AG AGA+ +L KPF++ L +R + ++ Sbjct: 81 SVLKELKRDENLGFIPVILLTAKADRTDLVAGLDAGADDYLTKPFDQSALVARVRSMLRI 140 Query: 121 QKSKDENQ 128 + D Q Sbjct: 141 KALHDLVQ 148 >gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans 2-40] gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family [Saccharophagus degradans 2-40] Length = 232 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 5/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + + + V + E + +++D + + Sbjct: 3 KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGL-HLGTTQTFDLIILDIMLPSMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 H+R + + L + + G GA+ +L KPF+ L+ ++ + Sbjct: 62 LQVCQHLRAKNIF--TPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLR 119 Query: 120 MQKSKDEN 127 + Sbjct: 120 RTDMSQKE 127 >gi|56418841|ref|YP_146159.1| lantibiotic biosynthesis response regulator [Geobacillus kaustophilus HTA426] gi|56378683|dbj|BAD74591.1| lantibiotic biosynthesis protein (response regulator) [Geobacillus kaustophilus HTA426] Length = 232 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 47/130 (36%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + V S EA + + +V+D MEG+ Sbjct: 4 KKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMI--NDDFDLIVLDIMMEGIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + ++ + E + G + ++ KPF+ + L+ + + Sbjct: 62 MELCTIIRDRVDY---PIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLR 118 Query: 120 MQKSKDENQF 129 ++ N+ Sbjct: 119 REERIRSNER 128 >gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 227 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + ++ + GF V A +E P+ +++D + + Sbjct: 3 KKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEEN-PDLIILDLMLPEISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L + + G GA+ ++ KPF + L ++ + Sbjct: 62 WDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLR 118 Query: 120 MQK 122 + Sbjct: 119 RSE 121 >gi|317968176|ref|ZP_07969566.1| two-component response regulator [Synechococcus sp. CB0205] Length = 246 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD R++ D G+ V +S + E + P+ +V+D + G Sbjct: 10 QRIWVVDDDAEQRRLVGTYLTDQGYDVRCLSSGEQLMVRLESQ-RPDLVVLDVMLPGEDG 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G D+ V L + D I G GA+ +L KPF L + + + + Sbjct: 69 LTLLRRLRDGGDDLPVVMLTAKGDGIDRIIGLEQGADDYLGKPFLPRELTARIEAVLRRR 128 >gi|319778506|ref|YP_004129419.1| transcriptional regulatory protein OmpR [Taylorella equigenitalis MCE9] gi|317108530|gb|ADU91276.1| transcriptional regulatory protein OmpR [Taylorella equigenitalis MCE9] Length = 235 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++VD +R++ N G+ + + + + P+ +V+D + Sbjct: 6 TKVMIVDDDPDLRQLLAQYLNRHGYDTLLVSDGNDLADRIIR-FSPDLIVLDRMLPSGDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++R D+ + L + + G +GA+ ++ KPF+ L + + + Sbjct: 65 VDFCRNLR--DQHEDIPIILLTARDETADRVLGLESGADDYIGKPFDPRELLARIETVLR 122 Query: 120 MQK 122 +K Sbjct: 123 RKK 125 >gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 224 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ GF EA EA + +V+D M + Sbjct: 1 MPTILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAP-IDLVVLDIMMPTMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+M TD+ + L + + + G G + +L KPF+ L ++ L Sbjct: 60 GWTLCKELRKM--NTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALL 117 Query: 119 QMQK 122 + + Sbjct: 118 KRYR 121 >gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] Length = 229 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + GF V + E E + ++D + G Sbjct: 1 MSKILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEE-FDLFILDLMLPGTD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R++ + + + + + I G GA+ ++ KPF+ + ++ Sbjct: 60 GFEICKKIREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHM 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis] Length = 223 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 8/132 (6%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V A + + + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDEN--QFLDA 132 +E Q L+A Sbjct: 118 EPEEVAPQALEA 129 >gi|329922247|ref|ZP_08277949.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328942284|gb|EGG38554.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 1049 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 LL+VD + KV HL D G+ + T EA + E+ + ++ D M + Sbjct: 720 RLLIVDDDPVNLKVIHHLLADEGYRIVAVTRAEEALQLLEQGEW-DLIISDVMMPQMSGY 778 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + +++ + L E + G +GAN +L+KP + L+ +R L ++ Sbjct: 779 ELSRTIRQRYMLSELPILLLTARNRPEDIHMGFISGANDYLIKPVDHLELKTRVRALLEL 838 Query: 121 QKSKDENQFLDA 132 + S E ++A Sbjct: 839 KHSIKERLHMEA 850 >gi|323967662|gb|EGB63074.1| sigma-54 interaction domain-containing protein [Escherichia coli M863] gi|327252489|gb|EGE64148.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli STEC_7v] Length = 461 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|294643338|ref|ZP_06721159.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|292641309|gb|EFF59506.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] Length = 1117 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R+ R +F + V EA E K LP+ ++ D M +E Sbjct: 831 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 888 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ + L Q + Sbjct: 889 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLLMQRK 948 Query: 122 KSKD 125 K + Sbjct: 949 KLQS 952 >gi|323528571|ref|YP_004230723.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385573|gb|ADX57663.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 246 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + + ++ P+ +V+D M G Sbjct: 7 VLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQ-MRAALEQGAPDLIVLDLMMPGEDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|261880781|ref|ZP_06007208.1| two component system sensor histidine kinase/response regulator [Prevotella bergensis DSM 17361] gi|270332558|gb|EFA43344.1| two component system sensor histidine kinase/response regulator [Prevotella bergensis DSM 17361] Length = 1324 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 9/134 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLV+ + + R LF V A E + KE LP+ +V D M + Sbjct: 1076 TILLVEDNEDLLMSLRKLFAKT-CRVLLARDGREGLDLVRKE-LPDLVVSDVMMPRMSGT 1133 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 H++ + + V L E IAG + GA+ ++ KPF+ + L L + Sbjct: 1134 EMCKHIKDDLAVSHIPVVLLTAMGSVENTIAGLKCGADDYIPKPFDSKLLVIRCNNLIRS 1193 Query: 120 ----MQKSKDENQF 129 +K ++E++ Sbjct: 1194 RNLLRKKIREEDRM 1207 >gi|209523776|ref|ZP_03272329.1| response regulator receiver protein [Arthrospira maxima CS-328] gi|209495808|gb|EDZ96110.1| response regulator receiver protein [Arthrospira maxima CS-328] Length = 141 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD + +V D + V A + A P+ +++D M + Sbjct: 10 SILIVDDTPDNLRVLSATLGDRDYDVQCAINGKLAL-MAVANQPPDLVLLDIKMPEMDGY 68 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ V +L D + G ++ KPF E + + + Sbjct: 69 QVCEALKSQQKTAEIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQLTI 128 Query: 121 QKSKDENQ 128 ++ + + Q Sbjct: 129 RRLQKQLQ 136 >gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149] gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149] Length = 236 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + G+ V + S EA E+E LP+ +++D + G+ Sbjct: 8 QKILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERE-LPDCVLLDLMLPGMTG 66 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +RQ ++ V L +V + + R GA+ ++ KPF+ E + + + Sbjct: 67 EAVLDQIRQKQK-KEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMR 125 Query: 120 MQKSKDEN 127 + +N Sbjct: 126 RYTKEAQN 133 >gi|197118049|ref|YP_002138476.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] gi|197087409|gb|ACH38680.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] Length = 396 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + + + G+ VF A S E E EKE P +++D M + Sbjct: 11 RVLIVDDEKVILDLTAIILKNRGYQVFTALSALEGLEVIEKE-RPELVLLDYMMPNMDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A D +V + E + +AGA+ ++LKPFN + L + + +++ Sbjct: 70 TALKEIRRSYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLRG 129 Query: 123 SKDENQFL 130 + +N+ L Sbjct: 130 IELQNRAL 137 >gi|16130157|ref|NP_416724.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli str. K-12 substr. MG1655] gi|89109039|ref|AP_002819.1| fused response regulator of ato opeon, in two-component system with AtoS [Escherichia coli str. K-12 substr. W3110] gi|157161704|ref|YP_001459022.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli HS] gi|170081840|ref|YP_001731160.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator and sigma 54 interaction protein [Escherichia coli str. K-12 substr. DH10B] gi|188494177|ref|ZP_03001447.1| sigma-54 dependent response regulator AtoC [Escherichia coli 53638] gi|238901395|ref|YP_002927191.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli BW2952] gi|253772856|ref|YP_003035687.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162232|ref|YP_003045340.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli B str. REL606] gi|256022097|ref|ZP_05435962.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp. 4_1_40B] gi|300903602|ref|ZP_07121520.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300931434|ref|ZP_07146763.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300948915|ref|ZP_07162977.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300958905|ref|ZP_07171009.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|301024238|ref|ZP_07187933.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301306547|ref|ZP_07212610.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301647689|ref|ZP_07247483.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307138879|ref|ZP_07498235.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli H736] gi|312973526|ref|ZP_07787698.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 1827-70] gi|331642850|ref|ZP_08343985.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli H736] gi|1168553|sp|Q06065|ATOC_ECOLI RecName: Full=Acetoacetate metabolism regulatory protein AtoC; AltName: Full=Ornithine decarboxylase antizyme; AltName: Full=Ornithine/arginine decarboxylase inhibitor gi|619917|gb|AAA60332.1| NtrC/NifA-like protein regulator [Escherichia coli] gi|1736875|dbj|BAA16016.1| fused response regulator of ato opeon, in two-component system with AtoS [Escherichia coli str. K12 substr. W3110] gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli str. K-12 substr. MG1655] gi|157067384|gb|ABV06639.1| sigma-54 dependent response regulator AtoC [Escherichia coli HS] gi|169889675|gb|ACB03382.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator and sigma 54 interaction protein [Escherichia coli str. K-12 substr. DH10B] gi|188489376|gb|EDU64479.1| sigma-54 dependent response regulator AtoC [Escherichia coli 53638] gi|238861249|gb|ACR63247.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli BW2952] gi|242377856|emb|CAQ32623.1| AtoC transcriptional activator; Az protein inhibitor of ODC [Escherichia coli BL21(DE3)] gi|253323900|gb|ACT28502.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974133|gb|ACT39804.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli B str. REL606] gi|253978300|gb|ACT43970.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli BL21(DE3)] gi|260448686|gb|ACX39108.1| two component, sigma54 specific, transcriptional regulator, Fis family [Escherichia coli DH1] gi|299880501|gb|EFI88712.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300314468|gb|EFJ64252.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300404338|gb|EFJ87876.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300451611|gb|EFK15231.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300460804|gb|EFK24297.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300838207|gb|EFK65967.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301074219|gb|EFK89025.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|309702531|emb|CBJ01858.1| acetoacetate metabolism regulator (two-component system response regulator) [Escherichia coli ETEC H10407] gi|310332121|gb|EFP99356.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 1827-70] gi|315136852|dbj|BAJ44011.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli DH1] gi|315255155|gb|EFU35123.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|315615482|gb|EFU96114.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 3431] gi|320199815|gb|EFW74404.1| Acetoacetate metabolism regulatory protein AtoC [Escherichia coli EC4100B] gi|323936835|gb|EGB33120.1| sigma-54 interaction domain-containing protein [Escherichia coli E1520] gi|323941085|gb|EGB37272.1| sigma-54 interaction domain-containing protein [Escherichia coli E482] gi|323961526|gb|EGB57134.1| sigma-54 interaction domain-containing protein [Escherichia coli H489] gi|323973079|gb|EGB68273.1| sigma-54 interaction domain-containing protein [Escherichia coli TA007] gi|331039648|gb|EGI11868.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli H736] Length = 461 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|26248609|ref|NP_754649.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli CFT073] gi|91211514|ref|YP_541500.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UTI89] gi|110642430|ref|YP_670160.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 536] gi|117624414|ref|YP_853327.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli APEC O1] gi|191170007|ref|ZP_03031561.1| sigma-54 dependent response regulator AtoC [Escherichia coli F11] gi|218559138|ref|YP_002392051.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli S88] gi|218690383|ref|YP_002398595.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli ED1a] gi|227887278|ref|ZP_04005083.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 83972] gi|237704695|ref|ZP_04535176.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp. 3_2_53FAA] gi|300936771|ref|ZP_07151664.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300981267|ref|ZP_07175444.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300983213|ref|ZP_07176490.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301022434|ref|ZP_07186316.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301048968|ref|ZP_07195957.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|306814666|ref|ZP_07448828.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli NC101] gi|331658300|ref|ZP_08359262.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA206] gi|26109014|gb|AAN81217.1|AE016763_176 Acetoacetate metabolism Regulatory protein atoC [Escherichia coli CFT073] gi|91073088|gb|ABE07969.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UTI89] gi|110344022|gb|ABG70259.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 536] gi|115513538|gb|ABJ01613.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli APEC O1] gi|190909523|gb|EDV69108.1| sigma-54 dependent response regulator AtoC [Escherichia coli F11] gi|218365907|emb|CAR03649.1| fused response regulator of ato opeon, in two-component system with AtoS: response regulator ; sigma54 interaction protein [Escherichia coli S88] gi|218427947|emb|CAR08718.1| fused response regulator of ato opeon, in two-component system with AtoS: response regulator ; sigma54 interaction protein [Escherichia coli ED1a] gi|222033982|emb|CAP76723.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli LF82] gi|226901061|gb|EEH87320.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp. 3_2_53FAA] gi|227835628|gb|EEJ46094.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 83972] gi|294494076|gb|ADE92832.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli IHE3034] gi|300299219|gb|EFJ55604.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300307631|gb|EFJ62151.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300397535|gb|EFJ81073.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300408614|gb|EFJ92152.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300458101|gb|EFK21594.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|305852060|gb|EFM52512.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli NC101] gi|307554287|gb|ADN47062.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli ABU 83972] gi|307626241|gb|ADN70545.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UM146] gi|312946842|gb|ADR27669.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli O83:H1 str. NRG 857C] gi|315285840|gb|EFU45280.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315292172|gb|EFU51524.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315298046|gb|EFU57315.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|323955988|gb|EGB51741.1| sigma-54 interaction domain-containing protein [Escherichia coli H263] gi|324006598|gb|EGB75817.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324013105|gb|EGB82324.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|331056548|gb|EGI28557.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli TA206] Length = 461 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 241 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A + +A E P+ +V+D + F Sbjct: 10 RVLVVDDEPNILELLTAALRLSGFEVRGAATGADAL-RAASEFGPDIVVLDVMLPDQDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V +L E IAG AG + ++ KPF+ + + +R + + + Sbjct: 69 SVARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVR 128 >gi|323527540|ref|YP_004229693.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384542|gb|ADX56633.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 247 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +VR++ GF V A + ++ P +V+D M + Sbjct: 3 QSILVVDDDPVVRELVSQYLEGRGFKVATLEHGM-ALQRKLQDERPALVVLDIMMPELDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V L D + G GA+ +L KPF L +R + + + Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 Query: 122 KS 123 S Sbjct: 122 GS 123 >gi|258651192|ref|YP_003200348.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554417|gb|ACV77359.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 252 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +++V+ ++ V R GF V + E + P +V+D + + Sbjct: 18 VVVVEDESVIADVIRRYLTAAGFGVRWCRTGQEGLAAVRTD-RPTAVVLDIGLPDMDGLD 76 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V ++ + I G G + +L+KPFN L +R + + Sbjct: 77 LCRRLREAGDWTPVLFVTARDEDVDRILGLELGGDDYLVKPFNPRELVARLRAVLRR 133 >gi|302872938|ref|YP_003841571.1| signal transduction histidine kinase, LytS [Clostridium cellulovorans 743B] gi|307686548|ref|ZP_07628994.1| signal transduction histidine kinase, LytS [Clostridium cellulovorans 743B] gi|302575795|gb|ADL49807.1| signal transduction histidine kinase, LytS [Clostridium cellulovorans 743B] Length = 1028 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD I ++ + + A E +++ + +++D M + Sbjct: 706 KILVVDDEIINLHSIANILKHENYDITCVADGESAIEILKRDKSFSLVILDIMMPDMTGY 765 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + L + +I + GAN FL KPF + L + L ++ Sbjct: 766 QVCKAIRETDNLFEMPILMLTASNQPKTVIQAFKEGANDFLYKPFEVDELLARTKTLTEL 825 Query: 121 QKS 123 +KS Sbjct: 826 KKS 828 >gi|228937822|ref|ZP_04100452.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951077|ref|ZP_04113195.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228970703|ref|ZP_04131345.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977280|ref|ZP_04137676.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|229068272|ref|ZP_04201575.1| Two-component response regulator [Bacillus cereus F65185] gi|229077897|ref|ZP_04210508.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229148925|ref|ZP_04277170.1| Two-component response regulator [Bacillus cereus m1550] gi|228634465|gb|EEK91049.1| Two-component response regulator [Bacillus cereus m1550] gi|228705415|gb|EEL57790.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714733|gb|EEL66605.1| Two-component response regulator [Bacillus cereus F65185] gi|228782419|gb|EEM30601.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228789005|gb|EEM36942.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228808594|gb|EEM55095.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821857|gb|EEM67855.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938303|gb|AEA14199.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKEFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488] Length = 227 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] Length = 228 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 7 NILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 66 DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 Query: 121 QK 122 + Sbjct: 123 YQ 124 >gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD +R + R G+ V EA EA E K + +V+D M + Sbjct: 1 MAKILAVDDEAKIRTIIREYAEFEGYEVAEAADGMEAVEMV-KNDDFDIIVMDIMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + A +++ + V L + + G G + +++KPF+ + L +R + Sbjct: 60 GYSAC-KEIQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLNR 118 Query: 121 QKS 123 K+ Sbjct: 119 AKA 121 >gi|220933691|ref|YP_002512590.1| adenylate/guanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219995001|gb|ACL71603.1| adenylate/guanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 380 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+VD + R + G V +A S +A + ++ + + +V+D M G+ Sbjct: 26 RTLLVVDDQEVNRLILARHLELLGHRVLQADSGPQALQILREQSV-DGVVLDVVMRGMDG 84 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ P + V + + + + AGA+ FL KP E L +R L + Sbjct: 85 YEVCRRIKADPETWFIPVVMVTVLNNQADRVRAMEAGADEFLSKPVYPEELSARIRSLMR 144 Query: 120 MQKSKDENQF 129 + ++ + Sbjct: 145 WRDARKALEQ 154 >gi|209693817|ref|YP_002261745.1| osmolarity response regulator [Aliivibrio salmonicida LFI1238] gi|208007768|emb|CAQ77889.1| response regulator homolog OmpR [Aliivibrio salmonicida LFI1238] Length = 239 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQ-MDRLLARETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRSNNNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123 >gi|94268091|ref|ZP_01291082.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451731|gb|EAT02499.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 298 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL +D + KV + G+ + ATS+ EAR +E P+ +++D + Sbjct: 74 TLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRL-QETPPDLVILDLMLPDGDGL 132 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + L + V L + G GA+ +++KPF L ++ + Sbjct: 133 EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLR 189 >gi|146301929|ref|YP_001196520.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146156347|gb|ABQ07201.1| histidine kinase [Flavobacterium johnsoniae UW101] Length = 1400 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 4/119 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 ++L+V+ ++RK ++L + + EA + A E K +PN ++ D M + Sbjct: 1145 QTILIVEDHKVLRKFMKNLLKK-DYNIIEAENGKIALEKALK-FVPNLIISDVIMPEMVG 1202 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +++ + + V L G +GA+ ++ KPFN R ++ L Sbjct: 1203 TELCSKIKENIKTSHIPVILLTSRSSLVYKFEGLESGADDYISKPFNLMEFRLRVKNLL 1261 >gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM 22836] Length = 229 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + ++ + +FG++V A + + + ++ D + Sbjct: 1 MKKILVVEDELRIAELLKKGLEEFGYIVTLAFDGEMG-KRLVNNHIYDLIITDVILPHIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + ++ + L + + G +GA+ +++KPF+ L + L Sbjct: 60 GFELCKEIRA--VHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILL 117 Query: 119 QMQK 122 + + Sbjct: 118 KRKN 121 >gi|332529947|ref|ZP_08405898.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040644|gb|EGI77019.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 250 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 8/126 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-----PNYLVIDESMEG 58 LL+++ + + R GF V A + P +V+D + Sbjct: 6 LLMIEDDARLAAMVRDYLAPSGFAVQHAGTGAAGLAKLGASPQGAEQAPQLIVLDLMLPD 65 Query: 59 VLEF--IAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R +P + L + D + G GA+ +L KPF L +R Sbjct: 66 MDGLDICRRIRSLPGATAHTPILMLTAKGDPMDRVIGLEIGADDYLAKPFEPRELLARVR 125 Query: 116 ELPQMQ 121 L + Sbjct: 126 ALLRRH 131 >gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis TX1467] Length = 229 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 2/133 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + ++ ++ G+ V +A EA + L++D M + Sbjct: 1 MK-ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + L + I G AGA+ ++ +PFN + ++ + + Sbjct: 60 GM-EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRR 118 Query: 121 QKSKDENQFLDAI 133 + + + D + Sbjct: 119 SQMQLTKEEPDEL 131 >gi|317474841|ref|ZP_07934111.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908979|gb|EFV30663.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1179 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 5/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + + + D F + A E + P+ +V D+ M + Sbjct: 920 SVLVVDDNVDLCNMLKLQLEDR-FNIHLAHDGVEGLKMVNFHH-PDVVVTDQMMPCMDGM 977 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119 + +R + + V L + D + I GAN++++KPF+++ L + +L + Sbjct: 978 EMLKRIRGDFQISHIPVIMLTAKGDEDSKIQAISQGANAYIVKPFSKDYLVVRIEQLLGE 1037 Query: 120 MQKSKDEN 127 ++ +++ Sbjct: 1038 RKRFREQM 1045 >gi|239995340|ref|ZP_04715864.1| two component transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 246 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + A + A +K + +V+D ++ + Sbjct: 1 MIRVLLVEDDMGLAGNIIDYLELEDMVCDHAANGVAALSLIQKHP-FDVVVLDINLPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G D + L E + G + GA+ +L+KPF+ L + L Sbjct: 60 GLSVCERVREDGNDTPIIMLTARDQLENKLEGFQKGADDYLVKPFDMPELVARVFALAHR 119 Query: 121 QKSK 124 + S+ Sbjct: 120 RSSQ 123 >gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length = 231 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + L GF V A EA K P+ +++D + G+ Sbjct: 1 MTEVLIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAE-PDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCKNIRLKSS---VPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QMQKSKDEN 127 + + D + Sbjct: 117 RRGRHDDSD 125 >gi|167841262|ref|ZP_02467946.1| two component transcriptional regulator, winged helix family protein [Burkholderia thailandensis MSMB43] Length = 255 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++D +R + + GF V A + + + + + L++D M G Sbjct: 15 RIIVLDDEAEIRNILQRFLASHGFDVRSARNSTQ-LDVFLERQPYDLLILDIMMPGEDGL 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + + L D + G GA+ +L KPF L +R + + Q+ Sbjct: 74 AVCRRLRARGQTIPILMLTARGDPVDRVVGLELGADDYLAKPFLPRELLARVRAMLRRQQ 133 Query: 123 SKDENQFL 130 + L Sbjct: 134 VTLRQRDL 141 >gi|148558726|ref|YP_001257449.1| putative transcriptional regulatory protein OmpR [Brucella ovis ATCC 25840] gi|148370011|gb|ABQ62883.1| putative transcriptional regulatory protein OmpR [Brucella ovis ATCC 25840] Length = 238 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R + G V A + E + + + +++D + Sbjct: 1 MKEGAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G +E VR + V + L D I G GA+ ++ KPF+ L +R Sbjct: 60 GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116 Query: 116 ELPQM-QKSKDENQFLDAI 133 + + + ++ + L I Sbjct: 117 AVLRRFEGNRSPQRALTQI 135 >gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 226 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 7/123 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +++V+ + ++ GF S + + + +++D + + Sbjct: 1 MKPRIMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAV-DLIILDVGLPDM 59 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +RQ+ V + +L D I G GA+ ++ KPF+ + ++ + Sbjct: 60 SGFELCKQIRQL---RSVPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAV 116 Query: 118 PQM 120 + Sbjct: 117 LRR 119 >gi|312891778|ref|ZP_07751285.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295720|gb|EFQ72882.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1330 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+ + + R N + + A++ EA + K+ LP+ ++ D M + L Sbjct: 1073 TILIAEDNEEFRHFLDEQLNKR-YHILLASNGKEALDMVLKQ-LPDLVISDIMMPEMSGL 1130 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ + + + L E G + A++++ KPFN + L +R L + Sbjct: 1131 ELCDALKKNVTTSHIPLLLLTARSSDESQFEGYQVRADAYITKPFNIDILFIRVRNLLEQ 1190 Query: 121 QKSKDEN 127 Q+ + + Sbjct: 1191 QEQRKQL 1197 >gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 233 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V G+ A A E E+ + +++D + + Sbjct: 5 RILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGW-SLILLDVMLPRLSGM 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G V L + G GAN ++ KPF E L +R + Q Sbjct: 64 EVLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQ 122 >gi|197302965|ref|ZP_03168015.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC 29176] gi|197297960|gb|EDY32510.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC 29176] Length = 238 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R+ + G+ V+EA E + EKE + ++D M + Sbjct: 9 MNHVLVVEDDKEIREGVKIYLKSQGYEVYEAADGIEGLKVLEKEE-IHLAIVDIMMPRLD 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D V L + + + G GA+ ++ KPF L + + Sbjct: 68 GIRMTMKLREKY-DFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRR 126 Query: 121 QK 122 + Sbjct: 127 YR 128 >gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|73540279|ref|YP_294799.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72117692|gb|AAZ59955.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 243 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R GF V + + + P +V+D M V Sbjct: 7 TQILVVDDDPELRDLLREYLTQQGFAVSVLHDG-DGLQARLERERPALIVLDLMMPKVDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A D+ V L D I G GA+ +L KPF+ L + + + + Sbjct: 66 LTALRNLRAKNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125 Query: 122 KSK 124 ++ Sbjct: 126 LAR 128 >gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium glutamicum ATCC 13032] gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + L GF A A + + +++D + G+ Sbjct: 1 MTRILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNE-IDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKELRSV---STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|254695542|ref|ZP_05157370.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 3 str. Tulya] gi|261215933|ref|ZP_05930214.1| two-component system response regulator [Brucella abortus bv. 3 str. Tulya] gi|260917540|gb|EEX84401.1| two-component system response regulator [Brucella abortus bv. 3 str. Tulya] Length = 238 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R + G V A + E + + + +++D + Sbjct: 1 MKEDTHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G +E VR + V + L D I G GA+ ++ KPF+ L +R Sbjct: 60 GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116 Query: 116 ELPQM-QKSKDENQFLDAI 133 + + + ++ + L I Sbjct: 117 AVLRRFEGNRSPQRALTQI 135 >gi|238764462|ref|ZP_04625410.1| Transcriptional regulator in 2-component system [Yersinia kristensenii ATCC 33638] gi|238697274|gb|EEP90043.1| Transcriptional regulator in 2-component system [Yersinia kristensenii ATCC 33638] Length = 232 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L GF V A +A + + L I + + Sbjct: 1 MHKILLVDDDRELTALLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDIMMPRKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQFLD 131 ++ Q +D Sbjct: 118 SNWSEQQQNVD 128 >gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA2] gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA3] gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL097PA1] gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL099PA1] gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266] Length = 226 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ R+ + GF V A + + E + +++D M G Sbjct: 1 MTRVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGA-DIVLLDLMMPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ +V + + + G GA+ ++ KPF+ L +R + Sbjct: 60 GTEVCRQLRQRG---NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVT 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|254430750|ref|ZP_05044453.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197625203|gb|EDY37762.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 254 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R + GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDSDMRDLVAGHLEHGGFDVQRAEDGIKG-QALALQFTPDLVLLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + D + ++G +GA+ +L KPF+ E L ++ L + Sbjct: 64 LCQRLRRDERTARIPILMITALADTKDKVSGFNSGADDYLTKPFDLEELTVRVKALLRR 122 >gi|153876951|ref|ZP_02004011.1| response regulator receiver protein [Beggiatoa sp. PS] gi|152066585|gb|EDN65989.1| response regulator receiver protein [Beggiatoa sp. PS] Length = 144 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+VD S ++ + N+ + AT+ A E + P+ +++D M + Sbjct: 1 MTTILIVDDSSENIELLMAVLNNIDYKFLTATTGKSAIEIVLSQK-PDLILLDVVMPDMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + + ++ + D + G GA ++ KPF ++ ++ Sbjct: 60 GYEVCTILKANLTTKRIPIIFITAKDDEDDESKGFEVGAVDYITKPFRPTIIQARVKTHL 119 Query: 119 QMQKSKDENQFL 130 +++ + +E + L Sbjct: 120 KLKFAYEELERL 131 >gi|22123988|ref|NP_667411.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis KIM 10] gi|45439938|ref|NP_991477.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis biovar Microtus str. 91001] gi|21956728|gb|AAM83662.1|AE013607_11 transcriptional regulator in 2-component system [Yersinia pestis KIM 10] gi|45434793|gb|AAS60354.1| two component system response regulatory protein [Yersinia pestis biovar Microtus str. 91001] Length = 240 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L GF V A +A + + L I + + Sbjct: 9 MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSSIDLLLLDIMMPRKNGI 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 69 ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 125 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 126 SNWSEQQQ 133 >gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51] gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 263 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD ++++ R G+ V A EA E E P +V+D + G LE Sbjct: 40 ILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILE-EKQPELVVLDIMLPGISGLE 98 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109 + +R+ P ++ V L + + + G GA+ ++ KPF+ Sbjct: 99 VLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 146 >gi|266623677|ref|ZP_06116612.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM 13479] gi|288864523|gb|EFC96821.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM 13479] Length = 223 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 58/134 (43%), Gaps = 9/134 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + ++ G+ EA E E E + +++D + G+ Sbjct: 1 MIKILIVDDEKPICDLIDLNLSEAGYHCRAVQDGAEAVEIIEHE-RFDLILLDIMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + ++R M + V ++ + + + G + GA+ +L+KPF+ L + + Sbjct: 60 GFDIMEYIRPME----IPVIFITAKYEVRDRVKGLKLGADDYLVKPFDVVELVARVEAVL 115 Query: 119 QMQKSKDENQFLDA 132 + + + L A Sbjct: 116 RRYNKTE--RRLSA 127 >gi|160885437|ref|ZP_02066440.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483] gi|156109059|gb|EDO10804.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483] Length = 1339 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R F D F + E+ + EA E K P+ ++ D M + Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFK-KAPDLVISDIMMPEMDGL 1141 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA+++++KPFN E L+ + L Sbjct: 1142 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1201 Query: 120 MQKSKD 125 Q+ + Sbjct: 1202 RQQLRK 1207 >gi|119486065|ref|ZP_01620127.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119456840|gb|EAW37968.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 479 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++++VD + ++ ++ G+ V + A E L P+ +++D M + Sbjct: 15 NIVVVDDTPDNLRLLGNILRKEGYKVRLIPNGELALSGIEL-LRPDLILLDIMMPEMNGY 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 E H++ DV V ++ + + AG ++ KPF + + + + Sbjct: 74 EVCQHLKAREHSRDVPVIFISAIDEVSDKVKAFEAGGVDYITKPFQVQEVLVRVETHLKI 133 Query: 120 ---MQKSKDENQFLD 131 + ++NQ L+ Sbjct: 134 HFLQKNLLEKNQELE 148 >gi|91785401|ref|YP_560607.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689355|gb|ABE32555.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 245 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +VR++ GF V A + + P +V+D M + Sbjct: 4 SILVVDDDPVVRELVSGYLQGRGFKVDTLQDGM-ALQRQLQHERPALIVLDIMMPELDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A G D+ V L D + G GA+ +L KPF L +R + + + Sbjct: 63 SALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRRG 122 Query: 123 S 123 S Sbjct: 123 S 123 >gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125] gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125] Length = 232 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R+ + G VF+A EA E +E + +++D M + Sbjct: 6 NVLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEED-IHLMLLDVMMPRLDGI 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + +L + + + G + G + ++ KPFN L ++ + Sbjct: 65 QTTLKIREA-RNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRR 121 >gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 1096 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 6/134 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L VD I +V +++ G+ + A + EA +E P+ +V+D M G L+ Sbjct: 702 ILAVDDEPINLQVLQNVLLPQGYRITTARNGSEALRSVAQE-RPDLIVLDVMMAGLSGLD 760 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ ++ + L M+AG AGAN +++KPF ++ L +R L + Sbjct: 761 VARDLRRRHGLHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLLEAS 820 Query: 122 KSK---DENQFLDA 132 +++ +EN+ L Sbjct: 821 RARSRAEENRELKE 834 >gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R + G+ A + EA +E P+ LV+D M G+ Sbjct: 21 RVLVVDDEANLSDLLRMALQNEGWDARTAANGQEALN-VIREFGPDLLVLDIMMPGLDGM 79 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G D V +L + E IAG AGA+ ++ KPFN E + +R + + Sbjct: 80 ELLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRH 138 >gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185] gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185] Length = 228 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ V EA EA E+ + + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWTVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQKSKDEN 127 + + S N Sbjct: 117 MESRYSSAVN 126 >gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 229 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D + + + F+V + +A + E E + +++D M Sbjct: 1 MYKVLIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVE-ENKFDIVLLDVMMPKKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + VR+ ++V + + + + I G GA+ +++KPF+ + + + Sbjct: 60 GFDVCREVRK---FSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|298527903|ref|ZP_07015307.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] gi|298511555|gb|EFI35457.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] Length = 460 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R R + D + EA S + + +++D + G+ Sbjct: 4 KILIIDDEEDIRLSLRGILEDENYQTLEAESGEQGLGLL--GPGVDLVLLDIWLPGMDGL 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R ++ V + + + + ++GA F+ KP + E + + + + Sbjct: 62 EVLNRLRESHPNLPVVMISGHGNIQTAVQAIKSGAFDFIEKPLSLEKVLITSEKALEFSR 121 Query: 123 SKDENQFL 130 + EN+ L Sbjct: 122 LRRENRKL 129 >gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 231 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LLLVD +R+ + + GF V A++ E + + +P+ ++ D M V Sbjct: 5 LLLVDDEPGLREAVKEYLQESGFKVQTASNAREGWDMM-QHSIPDLVISDIMMPQVDGYH 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F+ +R + V +L + I G +AG +++L KPF+ + L + L Sbjct: 64 FLKQMRDDARFQALPVVFLTAKGMTGDRIQGYQAGVDAYLAKPFDPDELVAIVENLLVRH 123 Query: 122 KSKDE 126 K + Sbjct: 124 TVKTQ 128 >gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 6/133 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + F G+ + + + +++D + G+ Sbjct: 1 MTRILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDY-DLIILDIQLPGMS 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ DV + + + + I G GA+ F+ KPF+ L + Sbjct: 60 GFEICKTIRERL---DVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHL 116 Query: 119 QMQKSKDENQFLD 131 + Q + Sbjct: 117 ARYERFKSGQKIS 129 >gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 403 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD V + GF V A + +A + + P+ +++D M G E Sbjct: 12 ILIVDDILENISVLFRFLGNEGFKVLVAQNGQQALKIVDL-TRPDIILLDVMMPGLSGFE 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ + ++ D + G + GA ++ KPF E + + + Sbjct: 71 VCQQLKSQQNTQDIPIIFMTALADTVDKVNGFKLGAADYITKPFQHEEVLVRINAHLSLH 130 Query: 122 KSKDENQ 128 K K + + Sbjct: 131 KLKKQLE 137 >gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis 638R] Length = 228 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+++ V + R + G+ A + ++ D + + Sbjct: 1 MYSILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L + + G AGA+ +++KPF+ L +R L + Sbjct: 60 GFELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKR 119 Query: 121 Q 121 + Sbjct: 120 K 120 >gi|315606703|ref|ZP_07881713.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315251558|gb|EFU31537.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1309 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + D+ + A + EA + + + ++ D M + Sbjct: 1056 RILLVDDDPEIARYIAGELGDW-YRFDSAPNGKEALKKLLGDTGYDLVISDVMMPEMDGV 1114 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +D+ V L + + E + G + GA++FL KPFN E L + L Sbjct: 1115 TLVKKIKTNSNISDIPVILLTSKSEVENRLEGLKKGADAFLAKPFNMEELHILIDNLVDN 1174 Query: 121 QKSKD 125 + Sbjct: 1175 IRRLR 1179 >gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 244 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + + GF V A A + P+ +V+D + G Sbjct: 18 RRVLVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHT-WQPDLVVLDIMLPGFDG 76 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++ V V L D ++ G GA+ ++ KPF+ L + L + Sbjct: 77 LEVCRRIQAQ---RPVPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLR 133 Query: 120 MQKSKDENQFLDAI 133 + + A+ Sbjct: 134 RVERAQQAARTPAL 147 >gi|298291963|ref|YP_003693902.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296928474|gb|ADH89283.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 239 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + +VD +R + G+ A + A + +V+D M G Sbjct: 7 IAIVDDHRDIRDLVGKYLQKHGYRTSLAENAA-AFRRLLDRNAIDLVVLDIMMPGEDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++R+ + V V L + I G GA+ +L KPFN L ++ + + Sbjct: 66 LCRYLRES---STVPVIMLTAMTEETDRIVGLELGADDYLAKPFNPRELLARIKAVLRRV 122 Query: 122 KSKDENQ 128 +S + Sbjct: 123 QSLPPQR 129 >gi|288925563|ref|ZP_06419496.1| putative response regulator receiver domain protein [Prevotella buccae D17] gi|288337779|gb|EFC76132.1| putative response regulator receiver domain protein [Prevotella buccae D17] Length = 1363 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + D+ + A + EA + + + ++ D M + Sbjct: 1110 RILLVDDDPEIARYIAGELGDW-YRFDSAPNGKEALKKLLGDTGYDLVISDVMMPEMDGV 1168 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +D+ V L + + E + G + GA++FL KPFN E L + L Sbjct: 1169 TLVKKIKTNSNISDIPVILLTSKSEVENRLEGLKKGADAFLAKPFNMEELHILIDNLVDN 1228 Query: 121 QKSKD 125 + Sbjct: 1229 IRRLR 1233 >gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT] gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 227 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + ++ + GF V A +E P+ +++D + + Sbjct: 3 KKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEEN-PDLIILDLMLPEISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L + + G GA+ ++ KPF + L ++ + Sbjct: 62 WDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLR 118 Query: 120 MQK 122 + Sbjct: 119 RSE 121 >gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 231 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++LLVD + + G+ V A + A + + V+D M G+ Sbjct: 7 TILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAM-SRHKHYDLYVLDIMMPGMNGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++R T+ V +L + G GA+ +L KPF L +R L + Sbjct: 66 ELCRNLRTR---TNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR 122 Query: 121 QKSKDE 126 + E Sbjct: 123 GQMDAE 128 >gi|218700689|ref|YP_002408318.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli IAI39] gi|331653655|ref|ZP_08354656.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M718] gi|218370675|emb|CAR18484.1| fused response regulator of ato opeon, in two-component system with AtoS: response regulator ; sigma54 interaction protein [Escherichia coli IAI39] gi|331048504|gb|EGI20580.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli M718] Length = 461 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|167747978|ref|ZP_02420105.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662] gi|317472474|ref|ZP_07931796.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167652628|gb|EDR96757.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662] gi|316900047|gb|EFV22039.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 2/131 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + +V+ +R++ + GF S + +P +++D + G Sbjct: 2 IYIVEDDANIRELVIYTLQSTGFDAGGYESGISFFKDLSAGKIPELVLLDIMLPGEDGIS 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R P + V + + + G +GA+ ++ KPF L ++ + + Sbjct: 62 ILRKIRSNPETKHIPVIMMTAKGAEYDKVLGLDSGADDYITKPFGMMELVSRIKAVLRRV 121 Query: 122 KSKDENQFLDA 132 K ++ + L A Sbjct: 122 KKEEPTEELSA 132 >gi|71278839|ref|YP_270816.1| response regulator/phosphatase [Colwellia psychrerythraea 34H] gi|71144579|gb|AAZ25052.1| response regulator/phosphatase [Colwellia psychrerythraea 34H] Length = 352 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + V + F + V A + A + + P+ +++D M G+ Sbjct: 15 TVLIVDDNSDNLDVLSGVLRPF-YKVKAAINGELALKVASAKNKPDIILLDIMMPGMDGY 73 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P ++ V ++ + + + AG + GA ++ KP + + +R + Sbjct: 74 EVCQQLKLNPSTANIPVIFVTAKTETKDEEAGFKLGAVDYITKPISVPIVLARVRAQLAL 133 Query: 121 QKSKDENQFL 130 + E + L Sbjct: 134 YNQQRELEIL 143 >gi|85705604|ref|ZP_01036702.1| DNA-binding response regulator [Roseovarius sp. 217] gi|85670029|gb|EAQ24892.1| DNA-binding response regulator [Roseovarius sp. 217] Length = 241 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 6/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R G A + A + KE + +V+D M G Sbjct: 8 ILIVDDHREIRDALVKYLEKNGIRATSAANAV-AMDVAMKEGQFDLIVLDVMMPGEDGLS 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + L D I G GA+ +L KPFN L ++ + + Sbjct: 67 VCRRLRAQGG---IPILMLTALGDETDRIVGLEVGADDYLPKPFNPRELLARIKAILRRS 123 Query: 122 KSKD 125 + Sbjct: 124 NRAE 127 >gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 254 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF ++A +A + + E+ + +++D M + F Sbjct: 33 NILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 91 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 92 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 Query: 121 QK 122 + Sbjct: 149 YQ 150 >gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437] Length = 226 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + R D G+ V A + P+ +++D M G+ Sbjct: 5 ILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLL--NRKPDLILLDIMMPGLDGIQ 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + +L + E I G G + ++ KPF+ E L + + + Sbjct: 63 VCRWIR---DSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRRE 119 >gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] Length = 1370 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + + + +++D M + Sbjct: 1250 RTVLVVDDDARNLFALSGILELHGFQVLHAENGRKGVDTLLAHPEVCLVLMDVMMPEMDG 1309 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R +P D+ + + + +GA+ ++ KP + L +R Sbjct: 1310 YAATAEIRGLPRYADLPIIAVTAKAMPGDREKSLLSGASDYVTKPVDAGELIARVRRWL 1368 >gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] Length = 2059 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +LL + + + +++ L FG V A + +A CE + + +++D M + E Sbjct: 1740 ILLAEDNVVNQRLAVRLLEKFGHKVTLAENGLQAVAACEIKH-FDLILMDVQMPHMGGFE 1798 Query: 62 FIAHVRQMP--LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R++ G + + + AG + ++ KP N + L+ + + Sbjct: 1799 ATAQIRKLESNEGIHTPIIAMTAHALARDRVKCIEAGMDDYISKPINPDQLKSMIEKYL 1857 Score = 50.6 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 18/140 (12%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF----CEKELLPNYLVIDESME-GV 59 L+VD + KV + +FG + +A + + +L ID ++ + Sbjct: 1604 LVVDDNKNTVKVLCQMLFEFGITSDSTDNGQDAYKMMTKAAQSNRPYEFLFIDAQIDTNI 1663 Query: 60 LEFIAHVRQMPLGTDVFVYYLLM----EVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 ++ + + P + V L+ E + +L KP + + ++ Sbjct: 1664 VDL---ISEDPKLSKTNVIMLICGGGQRGCPENASSLIG----GYLSKPVSPSEMLEILQ 1716 Query: 116 E--LPQMQKSKDENQFLDAI 133 + + + K + Q + I Sbjct: 1717 KQGISRQSKVCKKIQPISEI 1736 >gi|331683897|ref|ZP_08384493.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli H299] gi|331078849|gb|EGI50051.1| acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) [Escherichia coli H299] Length = 461 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|262408473|ref|ZP_06085019.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294810661|ref|ZP_06769310.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262353338|gb|EEZ02432.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294442130|gb|EFG10948.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1322 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + + + + V A + EA + E++ + + ++ D M + Sbjct: 1076 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1133 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q + + V L + + E I G GA++++ KPF+ E LR + L Sbjct: 1134 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1193 Query: 121 QKSKDE 126 ++ Sbjct: 1194 RERLRR 1199 >gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + E + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM 10507] gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM 10507] Length = 232 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD H + + + + V++ S EA E E+E L + ++D + GV F Sbjct: 4 KILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREEL-DLAILDIMLPGVDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + + I G GA+ ++ KPF L ++ + Sbjct: 63 SICQKIRERYTY---PIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQLRR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC 15579] gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC 15579] Length = 225 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L++D + +V + + G+ V +ATS EA + + E P+ L++D + + Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPDLLILDLMLPDI 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V + L + + ++ G G++ ++ KPF+ + L + + Sbjct: 60 SGENVCERIREESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116 Query: 118 PQMQK 122 + K Sbjct: 117 LKRVK 121 >gi|170693022|ref|ZP_02884183.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170142020|gb|EDT10187.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 246 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + + ++ P+ +V+D M G Sbjct: 7 VLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQ-MRAALEQGAPDLIVLDLMMPGEDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 233 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 5/135 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + ++ G+ V + + RE + P+ +++D + G+ Sbjct: 1 MPNILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASP-PDLVILDLMLPGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + L D + G GA+ ++ KP L +R L Sbjct: 60 GLQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 117 Query: 119 QMQKSKDENQFLDAI 133 + + D I Sbjct: 118 RRSSLSEPQSASDQI 132 >gi|58337702|ref|YP_194287.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227904348|ref|ZP_04022153.1| two component response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255019|gb|AAV43256.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227867996|gb|EEJ75417.1| two component response regulator [Lactobacillus acidophilus ATCC 4796] Length = 221 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + +V G+ V + +A E +K + +++D M + Sbjct: 1 MK-ILVAEDEPQLLRVLTVAMQKAGYEVDPVDNGLKAVEHAKKNCY-DVIILDIMMPVMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + G ++ L + + + + G +GA+ +L KPF+ + L +R + Sbjct: 59 GITALKQIRESGDKTYILMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRSKERR 118 Query: 121 QKSKDENQF 129 ++ N+ Sbjct: 119 EEDFTPNEL 127 >gi|51245653|ref|YP_065537.1| Pho family two-component response regulator [Desulfotalea psychrophila LSv54] gi|50876690|emb|CAG36530.1| probable two-component system response regulator (Pho family) [Desulfotalea psychrophila LSv54] Length = 208 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ + + R + + ++G+ V EA EA E + P +ID M Sbjct: 16 MK-VLVAEDELVTRLMVQVSLENWGYDVLEAKDGKEAMELFGRGEAPRIAIIDWEMPEVD 74 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ ++ L ++ G AGA+ ++ KPFN + LR +R Sbjct: 75 GLEVCKRLREQESENPPYIILLTAHGSKNDILLGFDAGADDYITKPFNSDELRARVRVAD 134 Query: 119 QMQKSKD 125 ++ +S+D Sbjct: 135 RLVRSQD 141 >gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0101] Length = 248 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 3/110 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A + +ELLP+ ++ D M Sbjct: 23 RLLLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEDGWAKA-QELLPDLVISDVMMPRLDGY 81 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + +R V +L + I G +AG + ++ KPF+ + L Sbjct: 82 GLLRKLRDDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDEL 131 >gi|116623704|ref|YP_825860.1| response regulator receiver modulated diguanylate cyclase [Candidatus Solibacter usitatus Ellin6076] gi|116226866|gb|ABJ85575.1| response regulator receiver modulated diguanylate cyclase [Candidatus Solibacter usitatus Ellin6076] Length = 325 Score = 136 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L + + + + + + + +G+ A EA E + P ++D M G+ Sbjct: 22 RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDGAPRLAILDWMMPGMDGV 81 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V++ L + + +I G AGA+ +L KPFN LR +R ++ Sbjct: 82 EICRRIRSANREPYVYILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRRI 141 Query: 121 QKSKDEN 127 ++E Sbjct: 142 LDLQEEL 148 >gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 229 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + E + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 + Q + Sbjct: 126 NLTTKQTI 133 >gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 813 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 9/132 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L ++ + K+ + + V AT + +++D + Sbjct: 1 MK-ILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAY-DLILLDWMLPKLT 58 Query: 59 VLEFIAHVRQM-----PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 +E +R D + + + G AGA+ +L+KP + E L Sbjct: 59 GIELCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLAR 118 Query: 114 MRELPQMQKSKD 125 +R L + + + Sbjct: 119 IRALLRRKSGER 130 Score = 86.4 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 16/114 (14%) Query: 25 GFMVFEATSVCEAREFCEKELLPNYLVIDESME---------------GVLEFIAHVRQM 69 G+ + + + E E+ P+ L++D +E +R Sbjct: 528 GYQLTLLSEPQQFWEILEQSE-PDLLILDIKFSKPASSDQEKERSSFFNGIELCQVIRND 586 Query: 70 PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + V L + D E + G AGA+ FL KP L +R + +K Sbjct: 587 LRWNRLPVILLSVHTDLETVQRGFMAGADDFLSKPVVASELLIRVRSRLKQRKM 640 Score = 67.1 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 7/122 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM----EG 58 +LL+++S +R++ +G AT++ EA E N +++D + Sbjct: 381 TLLILESDMTLRQLLVKEALTWGIETQVATTLDEA-EKLLNSGQCNVMLLDLNFYDSEPT 439 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+F+A + + L E FEK I AR G + FL+KP + + + Sbjct: 440 GLQFLATL--NRQHPSLPAIILTAEESFEKRIEAARWGNHYFLVKPVVPSQILAVVTQTL 497 Query: 119 QM 120 + Sbjct: 498 RQ 499 >gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + G+ A + + E P+ +V+D + G F Sbjct: 4 RVLIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKF-ASFSPHIIVLDLMLPGKDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L + + G GA+ ++ KPF L ++ L + Sbjct: 63 SVCKEIRSQSS---VPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRR 119 Query: 121 QKSKDEN 127 ++ Sbjct: 120 VNLSGQD 126 >gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 231 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L++D +R++ N GF F A + + ++E + + L++D + Sbjct: 4 KKVLIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKV-DILILDIMLPDEDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 EF +R D+ + +L + I G GA+ ++ KPF+ + ++ + + Sbjct: 63 WEFCQKIR---PEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLR 119 Query: 120 MQKSKDENQFL 130 EN + Sbjct: 120 RYNKAAENAKI 130 >gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC 13950] Length = 227 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074] gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074] gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D+ + G Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDQMLPGR 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 117 LRRSEEPAPEQL 128 >gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 241 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 6/115 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + +++ EA EA E + +++D + G + Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDY-DVILLDLMLPGKDGI 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 E +R + L + + + G G + +++KPF+ + ++ Sbjct: 68 EVCKEIRAQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119 >gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 249 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A A + ++ P+ +V+D + + Sbjct: 24 RVLVVDDELSITELLSMALRYEGWQIRSAGDGTGALQTA-RDFRPDAVVLDMMLPDMDGL 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 83 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 142 Query: 123 SKDENQFLDAI 133 + D + D++ Sbjct: 143 AAD--RRSDSV 151 >gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 235 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M LL+V+ + + + G+ V +++ E E +K ++D + + Sbjct: 1 MKEKLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKK-YKFALAMVDIMLPEM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + D+ + L + + G + GA+ ++ KPF+ + + + Sbjct: 60 DGFTLCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLR 119 Query: 120 MQKSKDE 126 + D+ Sbjct: 120 RYRKMDK 126 >gi|241762806|ref|ZP_04760870.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] gi|241368225|gb|EER62417.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] Length = 367 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD K+ L G++ A+S +A P+ +++D M + F Sbjct: 8 TILVVDDEERNVKLLETLLQADGYITMSASSGRDALAQASANP-PDLILLDIMMPDLDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P V + + D + + AGA FL KP +R L+ +R L ++ Sbjct: 67 DTTVLLKADPRTQAVPIIVITSLDDRQSKLRALEAGAEEFLSKPIDRADLKVRVRNLLRL 126 Query: 121 QKSKD 125 ++ D Sbjct: 127 KEYAD 131 >gi|228983785|ref|ZP_04143982.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775980|gb|EEM24349.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEAIKLIE-QKDFDIILLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|225570853|ref|ZP_03779876.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM 15053] gi|225160315|gb|EEG72934.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM 15053] Length = 224 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + ++ + F G+ V EA + E E ++ P+ +++D SM G+ F Sbjct: 4 KILIADDEQGIIQLLKDYFEIQGYRVLEALNGAEVLEKLARK--PDIILLDVSMPGIDGF 61 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +L ++ + I G + G + +++KPF+ E L + + Sbjct: 62 EVCRRIRSH---ISCPILFLTARIEEQDRINGLKLGGDDYIMKPFSIEELGARVEAHLRR 118 Query: 121 QKSKDEN 127 ++ K N Sbjct: 119 EERKRLN 125 >gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 222 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ V + + + G+ V EA + E + V+D + + Sbjct: 2 RILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDY-DLAVLDLGLPKMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D+ V L + + + G AGA+ +L KPF E L +R L + Sbjct: 61 AVLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRRAA 120 Query: 123 SKD 125 + Sbjct: 121 GRA 123 >gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 221 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + G++V AT A E + + +++D + + Sbjct: 3 KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIILDVMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + E + G + ++ KPF+ L + + + Sbjct: 62 FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118 Query: 120 MQKSKDEN 127 +EN Sbjct: 119 RANGLEEN 126 >gi|91205788|ref|YP_538143.1| response regulator PleD [Rickettsia bellii RML369-C] gi|91069332|gb|ABE05054.1| Regulatory components of sensory transduction system [Rickettsia bellii RML369-C] Length = 457 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD K+ + + VF+A+S EA +KE + + +++D M + F Sbjct: 4 NILIVDDIETNIKLLEAKLLNEYYTVFKASSGKEALNILKKEKV-DIVLLDVMMPEMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P T + V + D + + G AGA+ FL KP N L ++ L +M Sbjct: 63 EVCKKIKSDPETTHIPVVMVTALSDVDDRVKGLEAGADEFLTKPINDNALFIRIKSLSRM 122 Query: 121 QKSKDENQFLDA 132 + DE + ++ Sbjct: 123 KSLIDELKIRNS 134 Score = 54.0 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 12/136 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL- 60 +LL++ + K + + V ++ E E P+ +VI ++E Sbjct: 153 KKILLINDDVVQAKNIKQMLLKITSNVKVISNSEE--TDTINEYKPDLIVISSTLENEDP 210 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDF-------EKMIAGARAGANSFLLKPFNRETLRF 112 A +R P + V + L + D + ++ G G N + + P + L Sbjct: 211 LRVGAILRGKPEISGV-ILILQIYEDENGNENQMQLVMKGFELGINDYFVYPIDESELAA 269 Query: 113 AMRELPQMQKSKDENQ 128 ++ + ++ +D + Sbjct: 270 RIKTQLRRKQYQDNLR 285 >gi|42520116|ref|NP_966031.1| response regulator PleD [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409853|gb|AAS13965.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 460 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + V A EA + K+ P+ +++D M + F Sbjct: 4 KILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQ-QPDIILLDIMMPKMNGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ PL T + + + D + G AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLTRL 122 Query: 121 QKSKDENQF 129 + DE + Sbjct: 123 KMIIDEWRL 131 Score = 78.7 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + ++ + + EA E + ++ D Sbjct: 158 NVLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEAL-KVGIENGYDLIISDMQFSKTDGL 216 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + L + D ++ GAN +L P + L + + Sbjct: 217 RLCSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276 Query: 121 QKSKDENQF 129 ++ +D + Sbjct: 277 KRYQDALRM 285 >gi|330806958|ref|YP_004351420.1| response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375066|gb|AEA66416.1| Putative response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 246 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFVSKGYRARTVPNTEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 TACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQS 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|325859789|ref|ZP_08172919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella denticola CRIS 18C-A] gi|325482715|gb|EGC85718.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella denticola CRIS 18C-A] Length = 896 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D + +R R + + V EA E + ++P+ +V D M + Sbjct: 655 VLVIDDNSDIRTYLRSALSPM-YKVSEAVDGKSGLELARR-IMPDLVVSDIMMPVMDGLE 712 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++Q P + + V L E+ G GA++++ KPF+ L + L Q + Sbjct: 713 FCRQLKQDPAVSHIPVILLTARSLDEQRAEGYEYGADAYISKPFSLRLLLSRIDNLIQSR 772 Query: 122 KSKDEN 127 K + Sbjct: 773 KKLGQL 778 >gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 221 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + G++V AT A E + + +++D + + Sbjct: 3 KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIILDVMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + E + G + ++ KPF+ L + + + Sbjct: 62 FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVLR 118 Query: 120 MQKSKDEN 127 +EN Sbjct: 119 RANGLEEN 126 >gi|317481176|ref|ZP_07940251.1| two component regulator propeller [Bacteroides sp. 4_1_36] gi|316902672|gb|EFV24551.1| two component regulator propeller [Bacteroides sp. 4_1_36] Length = 1351 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + + F+D F V A + +E KE +P+ +V D M + Sbjct: 1095 LLVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKE-IPDIIVSDIMMPVMDGNE 1152 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + + L + G + GA+S+L KPF+ L + L Q + Sbjct: 1153 MCRELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLLQSR 1212 Query: 122 KSKD 125 ++ Sbjct: 1213 RNLA 1216 >gi|309791916|ref|ZP_07686398.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308226034|gb|EFO79780.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 484 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 3/117 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL+D + + + L + +F A + E + + P+ +++D M G+ F Sbjct: 5 TILLIDDNPQIHSIISDLLRPLDYQIFAALNGQEGLDLAHQH-RPDLVLLDVMMPGMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R + V V + D + G +GA+ F+ KPF+ LR + + Sbjct: 64 AVCQALRSDAQLSKVPVIMITALDDRGSRLRGFESGADDFIGKPFDTIELRARVATV 120 >gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1] gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1] Length = 228 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLSTTPDIVLMILDVMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +D+ + + + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-IDVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 121 QKSKDENQ 128 + + +N+ Sbjct: 119 SQKQVKNE 126 >gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 228 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 2/133 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ R G+ +A + ++ D + G Sbjct: 1 MKKILIVEDDENIAELERDYLKLNGYRADIEPDGQKACQKALGGGYAALII-DLMLPGKN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + +V + + + + I G GA+ +L KPF+ L ++ + Sbjct: 60 GF-DIIRDVRSTQEVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIRR 118 Query: 121 QKSKDENQFLDAI 133 + N+ + I Sbjct: 119 YERLKGNKTQEEI 131 >gi|270294551|ref|ZP_06200753.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270276018|gb|EFA21878.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 1351 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + + F+D F V A + +E KE +P+ +V D M + Sbjct: 1095 LLVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKE-IPDIIVSDIMMPVMDGNE 1152 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + + L + G + GA+S+L KPF+ L + L Q + Sbjct: 1153 MCRELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLLQSR 1212 Query: 122 KSKD 125 ++ Sbjct: 1213 RNLA 1216 >gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603] gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ V EA EA E+ + + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 IESR 120 >gi|254517513|ref|ZP_05129569.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911262|gb|EEH96463.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 231 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R G VF+A EA E +KE + +V+D M + Sbjct: 1 MFNVLVVDDEKEIRDAIDIYLRGEGMKVFKAKDGVEALELLDKEK-IHLIVLDIMMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIKTCLKIREK-RNLPIIMLSAKGEDSDKILGLNVGADDYIAKPFNHLELVARVKSQLRR 118 Query: 121 QKSKDENQ 128 + E + Sbjct: 119 YQKPLELE 126 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076450|gb|ADJ65849.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 8/131 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +R + + F A E E + +++D M G LE Sbjct: 7 VLIVDDDPDIRHLLADYLEAASYRPFTAAGGQEMWRILGSE-RIDIIILDLMMPGEDGLE 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + L I G GA+ +L KPF+ L ++ + + Sbjct: 66 LCRELRKK---RNTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRA 122 Query: 122 KSKDENQFLDA 132 +S E L+A Sbjct: 123 RSFPE--KLEA 131 >gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 271 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + G+ + +A EA E KE + L++D M + Sbjct: 42 MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEIL-KENEVHLLIMDVMMPRLD 100 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 101 GIRATLKIREE-SSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRR 159 >gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] Length = 224 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + F V EA E+ + + +++D + + Sbjct: 1 MK-ILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNY-DLIILDIMLPKMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + V L E I G GA+ +L+KPF+ L +R + + Sbjct: 59 GYEVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR 118 Query: 121 QKSKDENQF 129 + N+ Sbjct: 119 KYGNVSNEL 127 >gi|322418221|ref|YP_004197444.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320124608|gb|ADW12168.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 453 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R+V + G+ V+ A + E E P ++ D M G+ F Sbjct: 4 KILIIDDDSSLRRVLEYNLQQEGYDVYTAADGAAGLQLFE-ERSPQLVITDLKMPGMTGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V L + + + GA +L KPFNRE L+ + + Q+Q Sbjct: 63 EVLSTVKERAPSTVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKGLQLQG 122 Query: 123 SKDENQFLDA 132 +EN+ L Sbjct: 123 LSEENRLLKE 132 >gi|162451119|ref|YP_001613486.1| response regulator/GGDEF domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161161701|emb|CAN93006.1| response regulator/GGDEF domain protein [Sorangium cellulosum 'So ce 56'] Length = 391 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++ D + R++ + GF V EA E + + + +++D M L Sbjct: 25 RIVVADDDRLARQMLVSILQKAGFQVEAVDDGQEAIELIGRGGV-DLVLLDIVMPRLTGL 83 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ M + + V + ++ D + G + GA+ ++ KPF E L + + ++ Sbjct: 84 EACRLLKSMTSESFLPVVLVTVKSDTANRVEGLKIGADDYVCKPFEEEELLARVGAMLRI 143 Query: 121 QKSKDE 126 ++ D+ Sbjct: 144 KRLHDQ 149 >gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 237 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ + +A + E + +++D + + Sbjct: 1 MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSED-FDAILLDLMLPDLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + + ++G GA+ +++KPF E L +R + + Sbjct: 60 GL-EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118 Query: 121 QKSKD 125 K + Sbjct: 119 VKIEK 123 >gi|329297352|ref|ZP_08254688.1| osmolarity response regulator [Plautia stali symbiont] Length = 239 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R + + GF V + + + + +V+D + G Sbjct: 6 KILVIDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|295086435|emb|CBK67958.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1339 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R F D F + E+ + EA E K+ P+ ++ D M + Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGL 1141 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA+++++KPFN E L+ + L Sbjct: 1142 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1201 Query: 120 MQKSKD 125 Q+ + Sbjct: 1202 RQQLRK 1207 >gi|237719759|ref|ZP_04550240.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451028|gb|EEO56819.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1348 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R F D F + E+ + EA E K+ P+ ++ D M + Sbjct: 1093 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGL 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA+++++KPFN E L+ + L Sbjct: 1151 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1210 Query: 120 MQKSKD 125 Q+ + Sbjct: 1211 RQQLRK 1216 >gi|169335528|ref|ZP_02862721.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM 17244] gi|169258266|gb|EDS72232.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM 17244] Length = 235 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M+ +L+V+ + V+ + + A + +A + P+ +++D + + Sbjct: 1 MNRLILVVEDDNAVKNLISTTLESKEYKFHTAKNGKQALDEAIS-RKPDVILLDLGLPDM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++++ +++ + + + + I AGA+ +L KPF+ + L +R + Sbjct: 60 DGV-DIIKKIRGWSNMPIIVVSARSEDKDKIDALDAGADDYLTKPFSVDELLARLRVAFR 118 Query: 120 MQKSKDEN 127 ++ N Sbjct: 119 RLDYQNSN 126 >gi|166366489|ref|YP_001658762.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] gi|166088862|dbj|BAG03570.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] Length = 368 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD ++ + + G+ V +A + A + L+P+ +++D +M + Sbjct: 9 SVLIVDDLPNNVRLLSIMLTEKGYQVRKAINGQMALNTV-RSLIPDLILLDINMPDLNGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ V ++ D + + G ++ KPF E + + + Sbjct: 68 QVCEQLKADEKTREIPVIFISALDDVLDKVKAFQVGGVDYISKPFQGEEVMARIENQLTI 127 Query: 121 QKSKDENQ 128 + K + Q Sbjct: 128 SRQKKQLQ 135 >gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] Length = 231 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ +++V + F GF V A S A KE + +++D + + Sbjct: 5 VLIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAV-KEERFDLVLLDLMLPDMSGTE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q P + V V + + + I G GA+ +++KPF+ L R + + Sbjct: 64 ICRRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAILKRS 123 Query: 122 KS 123 +S Sbjct: 124 ES 125 >gi|187919315|ref|YP_001888346.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717753|gb|ACD18976.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 246 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + + ++ P+ +V+D M G Sbjct: 7 VLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQ-MRAALEQGAPDLIVLDLMMPGEDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRELRA-GKFRAVPVLMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 226 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+LLV+ + L GF V A A ++ + +++D + G+ Sbjct: 1 MTSILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRN-AIDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKRLRAVSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|23016209|ref|ZP_00055967.1| COG3437: Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Magnetospirillum magnetotacticum MS-1] Length = 379 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + K+ L DF + V A S +A + E P+ +++D M + Sbjct: 8 TVLVVDDTPDNLKLMSGLLKDF-YRVKIANSGVKALAIAQSETPPDLILLDIMMPEMDGY 66 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P ++ V +L + + + G R GA ++ KP + + + ++ Sbjct: 67 EVCRRLKSDPATREIPVIFLTAKAETQDEEMGLRVGAVDYITKPISPPIVMARVETHLKL 126 Query: 121 QKSKD 125 + S D Sbjct: 127 KASAD 131 >gi|299135153|ref|ZP_07028344.1| response regulator receiver modulated diguanylate cyclase [Afipia sp. 1NLS2] gi|298590130|gb|EFI50334.1| response regulator receiver modulated diguanylate cyclase [Afipia sp. 1NLS2] Length = 458 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A +A E C++ + +++D M + F Sbjct: 4 RVLVVDDVPANVKLLEARLSAEYFDVVTANCGTQALEICQRAEC-DIVLLDVMMPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCRRLKSNPRTHFIPVVMVTALDSPSDRVRGLDAGADDFLTKPVSDVVLIARVRSLTRL 122 Query: 121 QKSKDENQFLD 131 + DE + Sbjct: 123 KMMTDEMRMRA 133 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 4/112 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + V + EA + + L++ ++E Sbjct: 157 KILLVDDRPSSYERLAPVLAEE-HAVDVEPNPSEALFHAAENNY-DLLIVSLNLENYDGL 214 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + VR + V + L + +++ G G N +LL+P ++ L Sbjct: 215 RLCSQVRSLERTRSVPLLALSEADNNTQLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 235 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + ++ G+ VF+A + + + +K + +++D M G+ Sbjct: 5 TNILVVDDEKEIAELVEIYLVSDGYKVFKANNAMDGLDILDKNE-IHLVLLDIMMPGMDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 MEMCRKIRE---TNNIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLR 120 Query: 120 MQKSKDEN 127 + N Sbjct: 121 RYTQLNPN 128 >gi|253699609|ref|YP_003020798.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251774459|gb|ACT17040.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 383 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 6/136 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +++VD + ++ + + +F ATS +A E + P+ +++D M G Sbjct: 1 MKRQTVMIVDDTPANIEILSETLGEE-YELFFATSGADALELIRADK-PDLILLDIMMPG 58 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + ++ P D+ + ++ + E+ I G GA +L KP + +R ++ Sbjct: 59 MDGYELCSILKGDPATRDIPIIFVTAMIGEEEEIKGLELGAIDYLTKPISPHIVRARVKN 118 Query: 117 LPQMQKSKDENQFLDA 132 ++++ +D + L + Sbjct: 119 HLELKRYRDLLETLAS 134 >gi|153005118|ref|YP_001379443.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] gi|152028691|gb|ABS26459.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] Length = 509 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD R+V + + V A A + +E P+ +++D M + Sbjct: 195 RLLVVDDEADAREVLTEVLEPE-YEVMLAEDGEAAVDLAREEH-PDVVLMDLFMPRLDGL 252 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R +D+ V ++ D + GA +L KPF+ LR + ++ Sbjct: 253 QALERLRSDASTSDIPVIFVSGHGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRL 312 Query: 121 QKSKDENQFLD 131 +S + L Sbjct: 313 VRSHVALRELA 323 >gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 233 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D + + V + A EA ++ P +++D M Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMF-RQYNPAVVLLDVMMPKED 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R +DV V + + + I G GA+ +++KPF+ + +R + Sbjct: 60 GYEVCRKIRAK---SDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAIL 116 Query: 119 QMQKSKDENQF 129 + +K EN+ Sbjct: 117 RRM-TKKENEQ 126 >gi|15892244|ref|NP_359958.1| response regulator PleD [Rickettsia conorii str. Malish 7] gi|15619381|gb|AAL02859.1| regulatory components of sensory transduction system [Rickettsia conorii str. Malish 7] Length = 450 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GCEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P+ ++I ++E + Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208 Query: 62 FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + V + + E ++ G G N + + P L +R Sbjct: 209 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268 Query: 119 QMQKSKDENQ 128 + ++ +D + Sbjct: 269 RRKQYQDNLR 278 >gi|74312742|ref|YP_311161.1| acetoacetate metabolism regulatory protein AtoC [Shigella sonnei Ss046] gi|73856219|gb|AAZ88926.1| response regulator of ato [Shigella sonnei Ss046] gi|323168621|gb|EFZ54301.1| acetoacetate metabolism regulatory protein atoC [Shigella sonnei 53G] Length = 461 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|17232455|ref|NP_489003.1| adenylate cyclase [Nostoc sp. PCC 7120] gi|17134101|dbj|BAB76662.1| adenylate cyclase carring two-component hybrid sensor and regulator domains [Nostoc sp. PCC 7120] Length = 1155 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 5/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+VD + +R + G+ V+ A + E +EL PN +V D M L Sbjct: 798 SILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKV-QELTPNLIVTDLMMPLVTGL 856 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I VR + L +VD E I GA+++L KPFN L +R L + Sbjct: 857 EMIRMVRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLAL 916 Query: 121 QKSKDENQFLD 131 +++ E + L+ Sbjct: 917 KEN--EKRVLE 925 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 2/117 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + F + V A S A + +E ++ D+ M + Sbjct: 10 KILVVDDEPDNLDLLYRTF-YRDYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP 118 D+ L D E ++ AG ++ KP+ E L+ +R+ Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQAL 125 >gi|315606855|ref|ZP_07881864.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315251520|gb|EFU31500.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1328 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++ + + + + F V + EA KE +P+ +V D M + Sbjct: 1071 QHIIVAEDDDEIAQYLKAELEK-DFRVTLCPNGQEALNTVFKE-MPSLVVSDIMMPVMDG 1128 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A ++ + V L + E + G GA+++++KPFN + L + L Sbjct: 1129 NTLCARLKSNVNTNHIPVILLTAKSRDEDRLEGLETGADAYIVKPFNMDILHRTITNLLH 1188 Query: 120 MQKSKD 125 ++ Sbjct: 1189 QRELLR 1194 >gi|306820883|ref|ZP_07454503.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550997|gb|EFM38968.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 233 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ +R G+ V EA S EA E +K N V+D + G Sbjct: 1 MK-ILVLEDEFSIRSFVTLNLKREGYDVIEAGSGEEAIELYDKNQDINIAVLDVMLPGSI 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + H+R ++ + L + E + G GA+ ++ KPF+ + L +R L Sbjct: 60 DGFDVLKHIRTRS--QNIGIIMLTARTNEEDKVLGLEYGADDYINKPFSPKELIARIRAL 117 Query: 118 PQM 120 + Sbjct: 118 IRR 120 >gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 221 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + G++V AT A E + + +++D + + Sbjct: 3 KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIILDVMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + E + G + ++ KPF+ L + + + Sbjct: 62 FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118 Query: 120 MQKSKDEN 127 +EN Sbjct: 119 RANGLEEN 126 >gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM 12042] gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM 12042] Length = 229 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + GF S EA ++ + V+D + F Sbjct: 4 KILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEAL-KLIRDHKFDLAVLDVMLPDCSGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V L + + I G GA+ ++ KPFN + ++ + Sbjct: 63 HLCEEIRSHYNY---PVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQLRR 119 Query: 121 QKSKDENQF 129 + + Sbjct: 120 YMRYNSQKR 128 >gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP [Corynebacterium pseudotuberculosis C231] gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis 1002] gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis I19] Length = 237 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ GF V A S EA E KE P+ ++D M G+ Sbjct: 9 KRILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIA-KEFKPDAFILDVMMPGMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + G D V YL + E I G GA+ ++ KPF+ E + +R + + Sbjct: 68 YELLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126 >gi|258593571|emb|CBE69912.1| Acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) [NC10 bacterium 'Dutch sediment'] Length = 487 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R++ R + + G+ V A EA C +E + ++ D M G Sbjct: 5 RILVVDDEGPQREILRTILSAEGYSVETAPGGTEALRRC-QEKSYDLVLTDLRMPGTDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V + + + GA +L KP RE L ++ + + Sbjct: 64 SLVERLIRDDPPTLVVLMTAYGSLDSAEQALKKGAFDYLTKPLEREELLLTVKRAFERIQ 123 Query: 123 SKDENQFL 130 EN+ L Sbjct: 124 LSRENRLL 131 >gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1] gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1] Length = 223 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + E + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 + Q + Sbjct: 120 NLTTKQTI 127 >gi|158335939|ref|YP_001517113.1| response regulator [Acaryochloris marina MBIC11017] gi|158306180|gb|ABW27797.1| response regulator [Acaryochloris marina MBIC11017] Length = 126 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++++VD S +R + + G V EA A+ + P+ ++ D M + Sbjct: 1 MTTVMVVDDSPTMRAMLTDMLQRNGLEVIEAEDGLAAKTMLQDSSYPDLVITDIVMPRMN 60 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E V+ ++ V + + G + G ++++ KPFN + +R+L Sbjct: 61 GYELCRWVKNDLTDRNLPVIMCSTKGEAFDRHWGMKQGGDAYITKPFNPSEMLDLIRKLL 120 Query: 119 QMQ 121 + + Sbjct: 121 KTR 123 >gi|71279016|ref|YP_268481.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea 34H] gi|71144756|gb|AAZ25229.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea 34H] Length = 242 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 2/130 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+D + ++ F V + + +++D M + Sbjct: 9 KHILLIDDDAELSELLTEYLESENFKVTSCLDGASGLAKAF-DDSFDLILLDVMMPILNG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + + L + D I G GA+ +L KPF L ++ + + Sbjct: 68 F-EVLKALGGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILRRI 126 Query: 122 KSKDENQFLD 131 L Sbjct: 127 SIVKSQSTLA 136 >gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus LMG 18311] gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V A + E E E + +++D + + Sbjct: 3 KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ D ++ + ++AG GA+ +++KPF E L +R + Q Sbjct: 62 FEVT-RRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQ 120 Query: 122 KSKD 125 + Sbjct: 121 DIEA 124 >gi|78358043|ref|YP_389492.1| two component Fis family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220448|gb|ABB39797.1| two component transcriptional regulator, Fis family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 465 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R R + D G+ V EA + E + E P+ + +D + G+ Sbjct: 4 RVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLA-TETPPDLIFLDIWLPGMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V + + E + + GA F+ KP + E + + + + + Sbjct: 63 EVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYYR 122 Query: 123 SKDENQFLDA 132 + ENQ L + Sbjct: 123 LRRENQALRS 132 >gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 232 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 11 RLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPGMDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 123 SKDENQFL 130 S Q + Sbjct: 129 SLTTQQTI 136 >gi|325103127|ref|YP_004272781.1| transcriptional regulator, Crp/Fnr family [Pedobacter saltans DSM 12145] gi|324971975|gb|ADY50959.1| transcriptional regulator, Crp/Fnr family [Pedobacter saltans DSM 12145] Length = 349 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 4/128 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L+++ + +R+ + G+ V A + E + LP+ ++ D M Sbjct: 1 MKNKILIIEDNLDIREGTAEILELAGYEVLTAPNGKAGVEMA-QNNLPDLIICDIMMPEL 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + + P + +L + + + G GA+ +L KPF+ L A+ Sbjct: 60 DGYGVLYLLGKNPDTASIPFIFLTAKAERIDLRKGMEMGADDYLTKPFDDIELLNAIESR 119 Query: 118 PQMQKSKD 125 + +K + Sbjct: 120 LKKRKQQK 127 >gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + G V +A EA E E + +++D M + Sbjct: 5 TVLVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEML-HENEVHLILLDVMMPRLDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R ++ + L + + I G + GA+ ++ KPFN L ++ + Sbjct: 64 SATHRIREE-KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120 >gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium limosum KIST612] gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium limosum KIST612] Length = 239 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +LLVD + + GF V A + EA C KE P+ +++D + + Sbjct: 7 KRILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAAC-KENAPDVVILDIMLPDMD 65 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V +L D I G +G + ++ KPF+ + L F ++ Sbjct: 66 GIEVCRAIRE---FSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQL 122 Query: 119 QMQK 122 + + Sbjct: 123 RRLE 126 >gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261] gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261] Length = 231 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +++ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKP-IDLIITDIMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + D ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETEVVS 131 >gi|282899073|ref|ZP_06307054.1| henR [Cylindrospermopsis raciborskii CS-505] gi|281195989|gb|EFA70905.1| henR [Cylindrospermopsis raciborskii CS-505] Length = 377 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D ++ + + + + V ++ E P ++ D M Sbjct: 1 MFQILVIDDDSSIQILLKRILEKQHYQVITTSNGREGILQAVASP-PALIICDWMMPELS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ P + F L + G +GA+ F+ KP + L+ +R Sbjct: 60 GLEVCNFIKNHPNLSSTFFILLTSLDSVSDRVKGLDSGADDFISKPIEQNELQARVRAGL 119 Query: 119 QMQKSKDENQ 128 ++ + + Q Sbjct: 120 RLHQLNRDLQ 129 >gi|237715465|ref|ZP_04545946.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229444174|gb|EEO49965.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1329 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + + + + V A + EA + E++ + + ++ D M + Sbjct: 1083 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1140 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q + + V L + + E I G GA++++ KPF+ E LR + L Sbjct: 1141 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1200 Query: 121 QKSKDE 126 ++ Sbjct: 1201 RERLRR 1206 >gi|167751876|ref|ZP_02424003.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216] gi|167660117|gb|EDS04247.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216] Length = 217 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+D + + R+ G+ V+ A + E + P+ +++D M + Sbjct: 4 RILLIDDEDDILEFIRYNLTKAGYEVYTARNGAEGLQQAAAH-RPHLILLDVMMPTMDGI 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + V +L + E+ +AG AGA+ ++ KP + L ++ + + Sbjct: 63 ETCRALRCDPALKETMVVFLSALGEEEQQLAGFGAGADDYISKPIKPKLLISRIQAILKR 122 >gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 947 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+ + +R+V + F V A + E + + +++D M + F Sbjct: 828 RLLIAEDDATIRQVLATMLQRLQFSVDFAEDGAKVVEMWRQGEY-DLILMDVQMPRMDGF 886 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +R+ G + + + E AG + ++ KP N + + Sbjct: 887 QATRAIREQEQGGRIPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKECIEKV 940 >gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 232 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + K+ D + +A + + +++D ++ + Sbjct: 1 MKQILIIEDDPEIIKLLEIHLTDLIYTTAKAMDGKVGLAMALENSY-DLILLDLTLPTMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GIEICKKIRSQ---KNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2483 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 2/116 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + G V A + A E EK + +++D M + Sbjct: 2363 KKVLVVDDDMRNIFALTSVLENQGLQVIFAENGRAAIEMLEKNRDVDVVLMDIMMPEMDG 2422 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +RQ + + + + + AGA+ +L KP + + L +R Sbjct: 2423 YETMQAIRQNLQYAQLPIIAITAKALKDDREKCMAAGASDYLPKPVDTDKLIELIR 2478 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 10/126 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ ++ + + GF V A+ E LP+ + +D + V Sbjct: 2095 LLIIEDDLKFARIMAQMAREKGFKVLVASRGDSGLAMA-NEYLPHAITLDIQLPVVDGWS 2153 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---P 118 + +++ + V+ + G GA +L KP ++E L +L Sbjct: 2154 VLERLKRNGRTRHIPVHVIS----VMDKHLGNTHGAFGYLTKPVSKEGLERVFSQLAHFL 2209 Query: 119 QMQKSK 124 + + + Sbjct: 2210 ERKSRR 2215 Score = 71.0 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLF-NDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 LLL++ I R L V + EA E E + LVID + + Sbjct: 2214 RRLLLIEDDDIQRDSLVKLLSEGSDVEVTGVATGQEALHKLE-EGEYDCLVIDLLLPDMD 2272 Query: 61 E--FIAHVRQMPLGTDVFVYY-----LLMEVD 85 + V+ P D+ + L + + Sbjct: 2273 GAKLVEEVKTQPRFRDLPIVIYTGKELTAKDE 2304 >gi|254411882|ref|ZP_05025658.1| Adenylate and Guanylate cyclase catalytic domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181604|gb|EDX76592.1| Adenylate and Guanylate cyclase catalytic domain protein [Microcoleus chthonoplastes PCC 7420] Length = 368 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 10/136 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD R + R + G+ + EA+ + C+K P+ +++D M + F Sbjct: 16 VLIVDDEETQRLLMRRVIEKEGYQILEASDGLDCLRLCKK-TSPDIILLDAMMPVMDGFT 74 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---- 117 +++ P + V V + D + + AGA ++ KP + L +R L Sbjct: 75 CCQQLKKNPKMSQVPVLMITALEDKKSVNQAFEAGATDYVTKPIHWPVLLQRVRRLILQS 134 Query: 118 ---PQMQKSKDENQFL 130 Q+ +S++ + L Sbjct: 135 QLYIQLIQSQERTERL 150 >gi|194288688|ref|YP_002004595.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424] gi|193222523|emb|CAQ68526.1| putative response regulator, OmpR family [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R GF V + + + P +V+D M V Sbjct: 7 TQILVVDDDPELRDLLREYLTQQGFAVSVMHDG-DGLQARLERERPALIVLDLMMPKVDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A D+ V L D I G GA+ +L KPF+ L + + + + Sbjct: 66 LTALRNLRARNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125 Query: 122 KSK 124 ++ Sbjct: 126 LAR 128 >gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 ARYERLSGN 125 >gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] Length = 237 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+ D +R + + G+ V +A EA + E E + + LV+D M Sbjct: 9 NKILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDIIENEDV-DLLVLDIMMPKVNG 67 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VRQ ++ + L + + I G GA+ ++ KPFN ++ L + Sbjct: 68 IEVCKKVRQN---KNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLR 124 Query: 120 M 120 Sbjct: 125 R 125 >gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG] gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] Length = 227 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|118577295|ref|YP_899535.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504800|gb|ABL01282.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 7/131 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLV+ + +V GF V + EA E P +V+D + + Sbjct: 4 TILLVEDDARIAEVVIAYLERAGFKVLHTLTGREAMTLISTE-QPALVVLDLMLPDLSGE 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ D+ V L + E+ +AG GA+ +++KPF+ L ++ + + Sbjct: 63 SICRELKE----CDIPVIILTAKSSEEERLAGFALGADDYIVKPFSPRELVARVQAVLKR 118 Query: 121 QKSKDENQFLD 131 + + L Sbjct: 119 TGATENGARLS 129 >gi|311104194|ref|YP_003977047.1| transcriptional regulator OmpR 1 [Achromobacter xylosoxidans A8] gi|310758883|gb|ADP14332.1| transcriptional regulatory protein OmpR 1 [Achromobacter xylosoxidans A8] Length = 236 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ N G+ A + P+ LV+D + G Sbjct: 9 TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDATD-LSSRITRYAPDLLVLDRMLPGGDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R G D+ V L + I G AGA+ ++ KPF+ L + + + + Sbjct: 68 ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRK 127 Query: 122 K 122 + Sbjct: 128 R 128 >gi|298246790|ref|ZP_06970595.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297549449|gb|EFH83315.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 2/131 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+LLV+ + + + + + VF A KE P+ +++D + + Sbjct: 1 MTSILLVEDAPELARAIKQELEAQDYWVFHVGDGKSALSMHNKE-RPDLVILDWMLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+M V L + + G GA+ +L KPF+ L +R + + Sbjct: 60 GL-EVLRRMRQVAPTPVLMLTARSEEIDRVIGLEVGADDYLTKPFSMRELLARVRAMLRR 118 Query: 121 QKSKDENQFLD 131 + ++ D Sbjct: 119 TELLEQMLRAD 129 >gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alistipes shahii WAL 8301] Length = 223 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + R+ G+ VF A + EA E P+ +++D M + Sbjct: 4 RILLVDDEVDILEFVRYNLVREGYEVFTAENGAEAL-KVAAECRPHLILLDMMMPVMDGA 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ P+ D V +L + + +AG GA+ +L KP + L ++ + + Sbjct: 63 QTCRAIRRNPVLKDTMVVFLSALGEEGQQLAGFDVGADDYLTKPIKMKLLVSRVQAILKR 122 Query: 121 QKS 123 + Sbjct: 123 IDA 125 >gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 233 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 55/138 (39%), Gaps = 10/138 (7%) Query: 1 MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M S+L+++ + ++ + G++ A E E P+++ +D + Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYY-ETYPDFIFLDIML 59 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R + + L + + + I G GA+ +++KPF+ L M Sbjct: 60 PKIDGWELCQEIRWD--NKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARM 117 Query: 115 RELPQMQKSK-DENQFLD 131 + + + DE+Q + Sbjct: 118 KAVMRRADLLNDEDQVVS 135 >gi|296137486|ref|YP_003644728.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295797608|gb|ADG32398.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 240 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + G V A E + +V+D + G Sbjct: 7 ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGK-AMERALVAARIDLIVLDLMLPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 RQ+ +D+ V L D + G GA+ +L KPF+ L ++ + + +S Sbjct: 66 LC-RQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124 >gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + GF V A E P+ +V+D + G Sbjct: 3 RRVLVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEG-PDLVVLDVMLPGFDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE V+ V V L + ++ G GA+ +L KPF+ L + L + Sbjct: 62 LEVCRRVQAQ---RAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALLR 118 Query: 120 MQKSKDE 126 + E Sbjct: 119 RVDRERE 125 >gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 237 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+ D +R + + +MV A A + + + +++D M Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SIVILDLMMPK 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +R T+V + L + I G GA+ ++ KPF+ + ++ Sbjct: 60 VDGIEVCRKLR---DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKA 116 Query: 117 LPQM 120 L + Sbjct: 117 LIRR 120 >gi|164688486|ref|ZP_02212514.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM 16795] gi|164602899|gb|EDQ96364.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM 16795] Length = 224 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + +RK+ G+ FEA + + + ++ D M + Sbjct: 1 MFNILVIEDNKNMRKLICATLKQNGYSTFEAEDGEVGLDVLDTTH-IDLIICDIMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + + + E G GA+ +++KP + E L + + Sbjct: 60 GYEFTETLR--DGHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPIDFEELILRIGAIL 117 Query: 119 QMQK 122 + K Sbjct: 118 RRSK 121 >gi|28867559|ref|NP_790178.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv. tomato str. DC3000] gi|213971031|ref|ZP_03399152.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv. tomato T1] gi|301385594|ref|ZP_07234012.1| osmolarity response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058822|ref|ZP_07250363.1| osmolarity response regulator [Pseudomonas syringae pv. tomato K40] gi|302132149|ref|ZP_07258139.1| osmolarity response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850794|gb|AAO53873.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv. tomato str. DC3000] gi|213924267|gb|EEB57841.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv. tomato T1] gi|330874561|gb|EGH08710.1| osmolarity response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965663|gb|EGH65923.1| osmolarity response regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331014862|gb|EGH94918.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 246 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F+ G+ +V + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFSSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R V + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 236 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + K+ + G+ + + +A E +++D + G+ F Sbjct: 6 ILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQL-SMRSFELILLDIMLPGIDGFD 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + D+ + L + + I G G + +++KPF+ L +R + + Sbjct: 65 VCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRD 124 Query: 122 KSK 124 + + Sbjct: 125 RRQ 127 >gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104] gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104] Length = 227 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|150016986|ref|YP_001309240.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903451|gb|ABR34284.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 234 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + G+ V+ A++ E E E + L + ++D M + Sbjct: 5 NVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTL-HLAIVDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D V L + + I G GA+ ++ KPFN L + + Sbjct: 64 TMVMKLRENY-DFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 >gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2] Length = 237 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + GF V S A + + +V+D M G+ Sbjct: 7 KILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQSDEFDTVVLDIMMPGMSGL 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + L D I G GA+ +L KP N L +R + + + Sbjct: 67 -DVLRNVRAKKQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRRTQ 125 Query: 123 S 123 + Sbjct: 126 N 126 >gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 227 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ GF EA EA E CEK + +V+D M + Sbjct: 1 MTKILIVDDEAKIRELIIKYAKHEGFETAEAADGMEAVELCEKNNY-DLVVMDIMMPHLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A + L + I G G + +++KPF+ + L + + + Sbjct: 60 GFSAVKEIKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKR 119 >gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528] gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528] Length = 232 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + GF +++ + +A E E ++D + + F Sbjct: 4 NILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESE-QLELAILDVMLPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V L + + I G GA+ ++ KPF L ++ + Sbjct: 63 TICQKIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 119 >gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + ++ GF V A ++ + V+D M + Sbjct: 2 MHKILLIDDDIALTEMLEQYLVTEGFDVTVANDGQTGAQYVLAG-QFDLTVLDVMMPKLN 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + + V L + D + + G +GA+ ++ KP L +R L + Sbjct: 61 G-IETLRIIRQASHIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALLRR 119 Query: 121 QKSKD 125 K Sbjct: 120 SKITK 124 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ + + + V A A + E + +++D + + Sbjct: 1 MK-ILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVET-YEYDLILLDIVLPKLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G V + L G AGA+ +++KP + E L +R L + Sbjct: 59 GISLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD ++ + L +G + + E EK + P+ L++D M + Sbjct: 374 TKILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEK-IQPDMLILDIEMPTMSG 432 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R G +V + +L + + E + GA+ F+ KP L + + Sbjct: 433 IELCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNRLE 492 Query: 120 MQKSKDENQF 129 + + Sbjct: 493 RVRLVKIMER 502 Score = 83.7 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 9/123 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ D I R+ +L G+ V S +A + P+ +++D M G+ + Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQH-PDVILLDLVMPGMNGWE 1122 Query: 64 AH--VRQMPLGTDVFVYYL----LMEVDFEKMIAGARAGA--NSFLLKPFNRETLRFAMR 115 +++ D+ + + + G +L KP L ++R Sbjct: 1123 TMAGLKKCSDTRDIPIVICSVYKSSQNNSNYQQDSNSEGVKFADWLSKPVEETDLFNSLR 1182 Query: 116 ELP 118 ++ Sbjct: 1183 KVV 1185 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVLE 61 +L+++ H + + LF F A + EA +K ++ E Sbjct: 1193 KILIIEDDHDLADLLATLFGRHEIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1252 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRELPQM 120 + ++Q V V + + + G F K + + +L Q Sbjct: 1253 VVDWLKQHDQLFSVPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTTQEFEQRVMDLLQR 1312 >gi|255524870|ref|ZP_05391819.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511440|gb|EET87731.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 228 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + K L GF V A + EA + +ID S+ Sbjct: 1 MKRIFLVEDDKAIAKNLILLLRSEGFTVTHAPTRSEALAAL-AGNKFDLALIDISLPDGN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + D+ V +L D ++ G GA+ ++ KPF L +R + Sbjct: 60 GFTVCT-ETKETQDIPVIFLTASGDESSVVTGLNMGADDYVTKPFRPRELIARIRTALRK 118 >gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 7 RLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTQQTI 132 >gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 209 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 6/121 (4%) Query: 13 VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMP 70 +R++ ++FG+ EA + EA + E + +++V+D M + +R+ Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSVCKEIRK-- 57 Query: 71 LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130 +DV + +L + + + G R GA+ +++KPF+ L M + + +++ + + Sbjct: 58 -TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEI 116 Query: 131 D 131 Sbjct: 117 Q 117 >gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +K+ + Sbjct: 119 SRKASKK 125 >gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621] gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F + V EA EA ++E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALALFKEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +++ + Sbjct: 119 SRQASKK 125 >gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein (two-component), ColR [Azotobacter vinelandii DJ] gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein (two-component), ColR [Azotobacter vinelandii DJ] Length = 227 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ V A + +V+D + G+ Sbjct: 2 RILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G++ + L + + G +GA+ +LLKPF L + + + Sbjct: 61 QVCERLR-RDAGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRR 119 Query: 121 QKSKDENQF 129 + + Q Sbjct: 120 TQGSRKRQL 128 >gi|224538526|ref|ZP_03679065.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM 14838] gi|224519864|gb|EEF88969.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM 14838] Length = 1370 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 12/142 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+V+ +RK F + E T+ EA K P+ ++ D M + Sbjct: 1105 NRVLVVEDDEEIRKYICRELAS-DFHMSECTNGKEALAMILK-KEPDLIISDIMMPEMDG 1162 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF-AM---- 114 ++Q + + L + E + G GA+++++KPF+ E LR A+ Sbjct: 1163 LTLCKKIKQNVTINHIPIILLTAKSREEDNLEGLNMGADAYIVKPFSIEILRKTAINLIK 1222 Query: 115 -RELPQM--QKSKDENQFLDAI 133 RE+ + S+ + Q L + Sbjct: 1223 SREVLRNSFSGSQMQEQKLKKL 1244 >gi|157691146|ref|YP_001485608.1| response regulator [Bacillus pumilus SAFR-032] gi|157679904|gb|ABV61048.1| response regulator [Bacillus pumilus SAFR-032] Length = 227 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 9/136 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + V + F GF + ++E + L++D + + Sbjct: 1 MK-ILMIEDNQSVCTMTEMFFQREGFQAEFVHDGQDGLNRFKQEDDWDLLILDIMLPSMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VRQ+ +DV + L + + G GA+ ++ KPF+ TL ++ + Sbjct: 60 GLTICQKVRQI---SDVPIIMLTAKETESDQVLGFDLGADDYVTKPFSPLTLMARIKAVK 116 Query: 119 QM---QKSKDENQFLD 131 + + E++ L Sbjct: 117 RRFTQTTIQKEDERLA 132 >gi|148652131|ref|YP_001279224.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571215|gb|ABQ93274.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 223 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 8/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL D + + + + G A + + + + +V+D M + Sbjct: 1 MTHILLGDDDKELTDLLQEYLTNHGIRCDCAYDGEQVLNKIKSQPY-DLIVLDIMMPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+P T V L + D I G GA+ ++ KP N L + + + Sbjct: 60 GL-NVLRQLPTLTQTPVIMLTAKGDEIDRIIGLELGADDYIAKPCNPRELLARINAVIKR 118 Query: 121 QKSKD------ENQFLD 131 + E++ L Sbjct: 119 TTMQQSDIVPLEHERLQ 135 >gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides DSM 266] Length = 236 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+V+ + K+ + G+ + + +A E K + +++D + G+ F Sbjct: 6 LLVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAK-RRFDLVLLDLMLPGIDGFD 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 +RQ L D+ + L + + + G G + +++KPF+ L +R + + Sbjct: 65 VCRKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILKRD 124 Query: 120 MQKSKDENQFLDA 132 ++S + L A Sbjct: 125 RRQSAQHQEVLSA 137 >gi|117925744|ref|YP_866361.1| response regulator receiver modulated metal dependent phosphohydrolase [Magnetococcus sp. MC-1] gi|117609500|gb|ABK44955.1| response regulator receiver modulated metal dependent phosphohydrolase [Magnetococcus sp. MC-1] Length = 376 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD ++ + F + A A E + + P+ +++D M G+ Sbjct: 13 RVLLVDDVKENLQILMESLSSE-FAITVARDGVRALELAKTQPRPDVILLDVMMPGMDGY 71 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V ++ E G GA +++KPF+ + +R ++ Sbjct: 72 TVCRQLKDWVETRDIPVIFITAMDGEEDQFRGLNLGAVDYIIKPFSPPLVSVRVRNQVEL 131 Query: 121 QKSKDENQFLDAI 133 ++ +D LDA+ Sbjct: 132 KRHRD---MLDAL 141 >gi|329934372|ref|ZP_08284451.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305968|gb|EGG49823.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LL++ VR+ G + + E P+ +++D + G+ Sbjct: 1 MTRVLLIEDDPAVRRGVTLGLRRRGHETEAVATGEDGLEALAASP-PDLVLLDLMLPGMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + V V L D ++ G AGA+ +++KP + E + MR + Sbjct: 60 GLEVCRRIRE---TSQVPVVILSARGDDIDVVVGLEAGADDYIVKPSSDEVIEARMRAVM 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 228 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + + G+ + E E + +++D + Sbjct: 1 MSKILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSED-FDAILLDLMLPEIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R+ + + + ++G GA+ +++KPF E L +R + Sbjct: 60 GIEVCRRIRREKI---TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116 Query: 119 QMQKSKDEN 127 + ++++ Sbjct: 117 RRVDLEEQD 125 >gi|300783817|ref|YP_003764108.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299793331|gb|ADJ43706.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 232 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + R G+ V A A + E P+ +V+D + + Sbjct: 7 TVLVVDDEPQIVRALRINLTARGYKVITAHDGTAALKAV-AETKPDVVVLDLGLPDLDG- 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V + L D + AGA+ ++ KPF + L +R + Sbjct: 65 TEVIAGLRGWTTVPIIVLSARGDSADKVEALDAGADDYVTKPFGMDELLARLRAAVRR 122 >gi|300726408|ref|ZP_07059858.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella bryantii B14] gi|299776308|gb|EFI72868.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella bryantii B14] Length = 937 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D ++ +R+ R L + V EA K+ +P+ ++ D M + Sbjct: 667 ILIIDDNNDMREYLRILLKAQ-YHVLEAVDGKIGLSMARKQ-VPDIIICDIMMPVMDGLE 724 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +++ + + + V L E+ + G + GA+S++ KPF + L + L + + Sbjct: 725 FTRALKKDTVTSHIPVILLSARSLDEQKVQGYQEGADSYITKPFQADVLIARIDNLLKSR 784 Query: 122 K 122 + Sbjct: 785 E 785 >gi|296271045|ref|YP_003653677.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093832|gb|ADG89784.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 224 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ VR G V + EA + P +++D + G Sbjct: 1 MAGILLVEDDPSVRTGLELALTRQGHSVTSCATGEEALDHVRT-RRPEIVILDVMLPGID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R++ + V L D ++ G AGA+ +++KP L +R + Sbjct: 60 GIEVCRRIRKIDS---LPVILLTALGDDLDVVVGLEAGADDYVVKPVQPRVLDARIRAIL 116 Query: 119 QMQKSKDENQF 129 + +S ++ Sbjct: 117 RRVESVPADRL 127 >gi|284035483|ref|YP_003385413.1| histidine kinase [Spirosoma linguale DSM 74] gi|283814776|gb|ADB36614.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1388 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLV+ +R + LF + + V EA + + + LP+ ++ D +M + F Sbjct: 1133 VLLVEDQDDIRTYLKGLFVEK-YDVMEAADGAQGWDIATR-TLPDLIIADVAMPIMDGFA 1190 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 ++ P + + V L + + + G GA+ ++ KPF+ L+ + L Sbjct: 1191 MTHRLKSDPRTSHIPVIMLTAKGTVDSQLTGLETGADDYVSKPFHPILLQARVSNLLAVR 1250 Query: 121 QKSKDENQFLDAI 133 ++ K + L + Sbjct: 1251 EQLKAKYNRLVTL 1263 >gi|153808092|ref|ZP_01960760.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185] gi|149128995|gb|EDM20211.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 4/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + G+ V A S EA + + +++D M + Sbjct: 4 TRILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMDISSY--HLILLDVMMGEISG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 FKMANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLR 121 Query: 120 MQKSKDENQ 128 + + + Sbjct: 122 RTATAETER 130 >gi|119493450|ref|ZP_01624119.1| NarL subfamily protein [Lyngbya sp. PCC 8106] gi|119452694|gb|EAW33873.1| NarL subfamily protein [Lyngbya sp. PCC 8106] Length = 215 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L+LVD + + R G+ V A + +A E E + LP+ ++ D M + Sbjct: 10 KQLMLVDDDPNLVLLVRDYLEFRGYEVSTAENGLKALELLELQ-LPDLIICDIMMPEMDG 68 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ P + V +L + + + G GA+ +++KPF E L + + Sbjct: 69 YSLVKVIREDPRTGWIPVLFLSAKGLSQDKVKGLNTGADVYIVKPFEPEELVAQVESSLR 128 Query: 120 M 120 Sbjct: 129 Q 129 >gi|29655289|ref|NP_820981.1| transcriptional regulatory protein [Coxiella burnetii RSA 493] gi|161829818|ref|YP_001595970.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] gi|29542561|gb|AAO91495.1| two-component response regulator [Coxiella burnetii RSA 493] gi|161761685|gb|ABX77327.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] Length = 245 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + GF A E + K+ + + +++D M G Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAV-DLVILDIMMPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQM + + + L + I G GA+ +L KPFN L +R + + + Sbjct: 66 LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123 >gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 234 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+ D + V F D F V+ A EA + KE P+ +V+D M G+ Sbjct: 4 NSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRL-KEDHPDIMVLDIMMPGIDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R D+ + +L + D + G GA+ +++KPF+ L ++ + + Sbjct: 63 FEVCRRARQFT-DIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRR 121 Query: 122 KSK 124 + + Sbjct: 122 RGE 124 >gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + K+ + G+ + A+ EA E K + +++D M + Sbjct: 5 TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEIL-KNHKVDLIILDVMMPQMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + L + IAG GA+ ++ KPF+ L ++ + K Sbjct: 64 QACMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYK 122 Query: 123 S------KDENQ 128 +DEN+ Sbjct: 123 QLNNQSVRDENE 134 >gi|168483613|ref|ZP_02708565.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|172042917|gb|EDT50963.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|332205113|gb|EGJ19176.1| response regulator [Streptococcus pneumoniae GA47368] Length = 232 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +K+ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L + ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYLSPEQPFLFITAKTSEQDKIYGLNLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETELIS 131 >gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676] gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185] gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W] gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W] gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185] gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676] gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +K+ + Sbjct: 119 SRKASKK 125 >gi|157827084|ref|YP_001496148.1| response regulator PleD [Rickettsia bellii OSU 85-389] gi|157802388|gb|ABV79111.1| response regulator PleD [Rickettsia bellii OSU 85-389] Length = 457 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD K+ + + VF+A+S EA +KE + + +++D M + F Sbjct: 4 NILIVDDIETNIKLLEAKLLNEYYTVFKASSGKEALNILKKEKV-DIVLLDVMMPEMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P T + V + D + + G AGA+ FL KP N L ++ L +M Sbjct: 63 EVCKKIKSDPETTHIPVVMVTALSDVDDRVKGLEAGADEFLTKPINDNALFIRIKSLSRM 122 Query: 121 QKSKDENQFLDA 132 + DE + ++ Sbjct: 123 KSLIDELKIRNS 134 Score = 54.0 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 12/136 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL- 60 +LL++ + K + + V ++ E E P+ +VI ++E Sbjct: 153 KKILLINDDVVQAKNIKQMLLKITSNVKVISNSEE--TDTINEYKPDLIVISSTLENEDP 210 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDF-------EKMIAGARAGANSFLLKPFNRETLRF 112 A +R P + V + L + D + ++ G G N + + P + L Sbjct: 211 LRVGAILRGKPEISGV-ILILQIYEDENGNENQMQLVMKGFELGINDYFVYPIDESELAA 269 Query: 113 AMRELPQMQKSKDENQ 128 ++ + ++ +D + Sbjct: 270 RIKTQLRRKQYQDNLR 285 >gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EAT+ EA + ++ + + ++D + G+ Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLL 117 Query: 119 QMQKSKDE 126 + + +E Sbjct: 118 RRIEVHEE 125 >gi|13473197|ref|NP_104764.1| phosphate regulatory protein, PhoB [Mesorhizobium loti MAFF303099] gi|260461553|ref|ZP_05809800.1| two component transcriptional regulator PhoB, winged helix family [Mesorhizobium opportunistum WSM2075] gi|319781154|ref|YP_004140630.1| phosphate regulon transcriptional regulatory protein PhoB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023945|dbj|BAB50550.1| phosphate regulatory protein; PhoB [Mesorhizobium loti MAFF303099] gi|259032623|gb|EEW33887.1| two component transcriptional regulator PhoB, winged helix family [Mesorhizobium opportunistum WSM2075] gi|317167042|gb|ADV10580.1| phosphate regulon transcriptional regulatory protein PhoB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +++V+ + + R+ G+ V T EA E +E +P+ LV+D + + Sbjct: 5 RIMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEA-EIRLQENVPDLLVLDWMVPAVSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + G GA+ +L+KPF+ ++ L + Sbjct: 64 ELCRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALLRR 123 Query: 121 QKSK 124 K + Sbjct: 124 AKPE 127 >gi|332975405|gb|EGK12298.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + F G+ + A + E + +++D + G+ Sbjct: 1 MHKILIIEDNPDIVANIYAFFEPKGYELDNAHNGPSGLSLL-AENQYDVILLDVMLPGMN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ L V L +AG +GAN +L+KPF+ L ++ L Sbjct: 60 GTELCRTLRE-KLHIKTPVLMLTARDTISDKVAGFDSGANDYLVKPFSLVELEVRVKALL 118 Query: 119 QMQK 122 + + Sbjct: 119 RRHQ 122 >gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673] gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673] Length = 225 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ + + K + L F V + +A ++ + +V+D M + Sbjct: 2 RILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDY-DVIVLDIMMPKKNGM 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ +R G V V L + E +AG AGA+ +L KPF ++ L + Sbjct: 61 EVLSQIR--SEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKALARR 118 >gi|322411718|gb|EFY02626.1| response regulator protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ ++KV + G+ V A++ EA + E + +V+D M + Sbjct: 1 MFAILVVEDDWSLQKVISTKLSQEGYHVHVASNGQEALNYLE-NTHIDLMVVDIMMPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R G + + + + FE + + G + +L+KP L ++ L Sbjct: 60 GYSLVKLLR--ESGQQLPILMMTAKSQFESLEEAFQLGVDDYLVKPIILSELVLRIKALL 117 Query: 119 QMQKSKDENQF 129 + K + E + Sbjct: 118 RRVKLEHEQEL 128 >gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus thermophilus ND03] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V A + E E E + +++D + + Sbjct: 3 KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ D ++ + ++AG GA+ +++KPF E L +R + Q Sbjct: 62 FEVT-RRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQ 120 Query: 122 KSKD 125 + Sbjct: 121 DIEA 124 >gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp. subtilis str. 168] gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto BEST195] Length = 248 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + + + G+ + +A S EA + + + +V+D M G+ Sbjct: 16 SILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 74 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D +++L ++G GA+ ++ KPFN L +R + Sbjct: 75 FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 131 Query: 120 MQKSKDE 126 E Sbjct: 132 RTYQSKE 138 >gi|209525668|ref|ZP_03274205.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209493837|gb|EDZ94155.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 592 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + G+ V +A + A K + P+ +++D M G+ Sbjct: 8 ILVVDDKPENLHLLSEILMLEGYNVRKAVNGKMAL-MAVKTVQPDLILLDIMMPGMDGYQ 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ V V +L D + AG ++ KPF E + ++ ++ Sbjct: 67 VCKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDYITKPFQMEEVLVRVQNHLMLK 126 Query: 122 KSKDE----NQFLDA 132 +++ + N L+A Sbjct: 127 EAEKKILELNTELEA 141 >gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] Length = 231 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 8/135 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+V+ + + + G+ V A + +A +F + + +++D M G Sbjct: 1 MTHRILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQALKFV--DDSLDLVILDVMMPGI 58 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R ++V + +L + G AG + ++ KPF++E L + Sbjct: 59 SGIETCQQMRAS---SNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQ 115 Query: 118 PQMQKSKDENQFLDA 132 + E + + Sbjct: 116 LRRYTVYQEKKEQEE 130 >gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC 19977] gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus] Length = 228 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF A E+ + +++D + G+ Sbjct: 1 MTSVLIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRAKSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QMQKSKDE 126 + +E Sbjct: 117 RRGSDSEE 124 >gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum] Length = 232 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + L GF A A + + +++D + G+ Sbjct: 1 MTRILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNE-IDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKELRSV---STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|332829569|gb|EGK02215.1| hypothetical protein HMPREF9455_01485 [Dysgonomonas gadei ATCC BAA-286] Length = 1347 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + +++ R G+ V A E + EKE + ++ D M + Sbjct: 1096 QTILIVEDNPDMQEFIRKNLI-LGYNVLLANDGIEGIKLLEKEE-IDLIISDIMMPNMDG 1153 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F V+ L + + L + + I GA++++ KPF+ L +R L + Sbjct: 1154 IEFCNKVKNSLLWNHIPLIMLTAKTNIASKIEALETGADAYIEKPFSISFLSVQIRNLLE 1213 Query: 120 MQKS 123 ++S Sbjct: 1214 SRRS 1217 >gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 549 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + GF V E E E P+ +++D +M + F Sbjct: 9 TILIVDDNPNNLSFLYKTLESAGFQVRVEMDGEGTIEQVEYEP-PDLILLDVNMPVIDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P+ D+ + ++ D I G GA ++ KPF +E + +R ++ Sbjct: 68 ETCKKLKNNPISKDIPIIFMTAFADINHKIKGLSLGAVDYIPKPFEQEEVLARVRLHLKL 127 Query: 121 ----QKSKDENQFLDA 132 + ++N +L Sbjct: 128 YFLTKTLAEQNAYLQE 143 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 3/109 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + R V ++ GF V A + + + + P+ ++ D M Sbjct: 425 RKLLVVDDNKENRLVLLNMLEPLGFEVVTAENGQQGLDVAIA-IRPDLILTDLFMPVKTA 483 Query: 62 FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108 F +R++P +V + L G FL KP +++ Sbjct: 484 FTMVPEMREIPDLKNVPIIALSARTFEIVQKQSQMLGCEGFLPKPIDQD 532 >gi|302340322|ref|YP_003805528.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301637507|gb|ADK82934.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 374 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + + + G+ + A S EA E + + +++D M G + Sbjct: 8 NILIVDDTRNNLFILSSILRKKGYRIAAALSGLEAIELL-QHKQFDLILLDIRMPGINGI 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P ++ V ++ D + + AG ++LKPF L + + Sbjct: 67 ETCKRIKATPETAEIPVLFISAIDDHDLIAEAFAAGGRDYILKPFEPVELIARIETQLDI 126 Query: 121 QKSKDENQFLDA 132 Q+ + + ++A Sbjct: 127 QRGRRLLEQINA 138 >gi|302037343|ref|YP_003797665.1| sigma-54 dependent transcriptional regulator [Candidatus Nitrospira defluvii] gi|300605407|emb|CBK41740.1| Sigma-54 dependent transcriptional regulator [Candidatus Nitrospira defluvii] Length = 448 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 1 MDSL-LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M + L+ D + ++ + F G+ V A+ A + E+ P+ LV+D M Sbjct: 1 MKPIVLVADDDPSILEILKLGFRTKGYEVITASDGKSAIQAIEQN-RPDLLVLDIEMPHL 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E + H+R+ + V + + + GA F+ KPF E L +++ Sbjct: 60 TGIEVLRHLRKD--WPTLPVVIMTAHGTISLAVEAMKEGATEFITKPFEMEQLLLVIQKA 117 Query: 118 PQMQKSKDENQFL 130 + + + E + L Sbjct: 118 LEREGLRREVEVL 130 >gi|282899741|ref|ZP_06307704.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195356|gb|EFA70290.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 368 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + L G+ + + A + + P+ +++D M + Sbjct: 11 RILVVDDRRDNLILVQTLLESEGYAIDSVSDGATALQKTVQSP-PDLILLDVMMPEMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + D ++ G AGA+ F+ KPF+ L +R L ++ Sbjct: 70 EVTRTIRSYTNIDYIPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLRL 128 Query: 121 QKSKDENQFLD 131 + S DE Q + Sbjct: 129 KYSIDEQQKMS 139 >gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 234 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + K+ + G+ V +A A E ++ + +++D + G+ Sbjct: 3 KRILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALE-ITEQDEVDLVILDVMLPGLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + L + I G GA+ +++KPFN L ++ L + Sbjct: 62 ISVCMKIRES-KTTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRRS 120 Query: 122 KSKDE 126 + Sbjct: 121 SYTAQ 125 >gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + K+ + G+ + A+ EA E + + + +++D M + Sbjct: 5 TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKV-DLIILDVMMPQMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + L + IAG GA+ ++ KPF+ L ++ + K Sbjct: 64 QACMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYK 122 Query: 123 S------KDENQ 128 +DEN+ Sbjct: 123 QLNNQSVRDENE 134 >gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|298482890|ref|ZP_07001072.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|298270862|gb|EFI12441.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 1336 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ + V ++ EA E P ++ D M + Sbjct: 1071 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1128 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1129 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1188 Query: 120 MQKSKD 125 + Sbjct: 1189 NRALLR 1194 >gi|297588589|ref|ZP_06947232.1| response regulator [Finegoldia magna ATCC 53516] gi|297573962|gb|EFH92683.1| response regulator [Finegoldia magna ATCC 53516] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++++VD + K + V +A + +A E EK + ++D MEG+ Sbjct: 1 MYNIMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGYDALELMEKNK-IDLFLVDIMMEGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + ++ + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLELTQKIREV-SNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRR 118 Query: 121 QKSKDENQF 129 + +N Sbjct: 119 LELSKDNSL 127 >gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ L G+ V + E P+ +++D + G+ Sbjct: 2 RILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEH-PDLVLLDVMLPGLDGV 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + + + D +IAG AGA+ ++ KPF L ++ + Sbjct: 61 SVCRLLREE---SDVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRR 117 Query: 121 QKSKDE 126 Q+++ E Sbjct: 118 QENESE 123 >gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 231 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + + + G V A + E E ++ +P+ +V+D M Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE--MPDLIVLDIMMPDID 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R + +L + I G G + +++KPF+ + L + Sbjct: 59 GYEVCRKIR---DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHL 115 Query: 119 QMQK 122 + +K Sbjct: 116 RREK 119 >gi|153870359|ref|ZP_01999776.1| two-component response regulator [Beggiatoa sp. PS] gi|152073174|gb|EDN70223.1| two-component response regulator [Beggiatoa sp. PS] Length = 301 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +V ++ G+ A A F +K P+ +++D M G +E Sbjct: 10 VLIVDDHPQNLQVLGNMLKANGYKPAAAQDGTIALAFVQKTH-PDLILLDIMMPGIDGIE 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + V ++ D + +AG ++ KPF +E + ++ ++ Sbjct: 69 VCKQLKQQEHTRKIPVIFITALSDTRDKLKAFKAGGVDYITKPFVQEEVIARIKVHIALK 128 Query: 122 KSKDENQFLD 131 K+ ++ + + Sbjct: 129 KALEKLEQMS 138 >gi|149277598|ref|ZP_01883739.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] gi|149231831|gb|EDM37209.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] Length = 1363 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 12/141 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ +R + R++ + ++++EA + A +F +K +P+ ++ D M + Sbjct: 1106 QSVLIVEDEPELRFLIRNVLKEH-YIIYEAGNGRAALQFLQK-TVPSLIISDVMMPDMDG 1163 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118 V+Q P + L + G GA++++ KPF L+ +R+L Sbjct: 1164 LELCRAVKQTPALAQIPFVILSARGTEDHKTEGYEVGADAYIPKPFQINYLQVRIRKLLD 1223 Query: 119 ---QMQKSKDE----NQFLDA 132 +MQ + NQF+DA Sbjct: 1224 YQERMQHLIKDQHITNQFMDA 1244 >gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX] gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX] Length = 225 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A E +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAF-RETKPDLVLLDLMLPGA 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGIDVCRQIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRAR 116 Query: 118 PQMQK 122 + + Sbjct: 117 LRRTE 121 >gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Rv] gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium bovis AF2122/97] gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T17] gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium tuberculosis 210] gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN R506] gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN V2475] gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis] gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium tuberculosis W-148] gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] Length = 227 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 226 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + GF T EA + + +V+D + + F Sbjct: 2 RILIVDDEPAISDTLAYALQAEGFASDCCTLGAEALALLDAGGH-DLVVLDVGLPDISGF 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV V +L D I G GA+ ++ KPF+ + +R + + Sbjct: 61 DVCRLLRRN---SDVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRR 117 Query: 121 QKSKDEN 127 + + N Sbjct: 118 SRPELRN 124 >gi|253701161|ref|YP_003022350.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251776011|gb|ACT18592.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 396 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + + + G+ VF A S E E +KE P +++D M + Sbjct: 11 RVLIVDDEKVILDLTAIILKNRGYQVFTALSALEGLETIDKE-RPELVLLDYMMPNMDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A D +V + E + +AGA+ ++LKPFN + L + + +++ Sbjct: 70 TALKEIRRSYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLRG 129 Query: 123 SKDENQFL 130 + +N+ L Sbjct: 130 IELQNRAL 137 >gi|225628912|ref|ZP_03786946.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo] gi|260167230|ref|ZP_05754041.1| Probable transcriptional regulator ycf27 [Brucella sp. F5/99] gi|261756634|ref|ZP_06000343.1| response regulator receiver [Brucella sp. F5/99] gi|225616758|gb|EEH13806.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo] gi|261736618|gb|EEY24614.1| response regulator receiver [Brucella sp. F5/99] Length = 238 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R + G V A + E + + + +++D + Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLNRTP-IDLVILDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G +E VR + V + L D I G GA+ ++ KPF+ L +R Sbjct: 60 GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116 Query: 116 ELPQM-QKSKDENQFLDAI 133 + + + ++ + L I Sbjct: 117 AVLRRFEGNRSPQRALTQI 135 >gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A +E P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|160899786|ref|YP_001565368.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160365370|gb|ABX36983.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1287 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++ D + +R L + V A ++ P+ ++ D M Sbjct: 656 RIVCADDNADMRSYIGQLLEPL-YEVEIVGDGRAALASIHRQ-RPDLVLADVMMPVLDGF 713 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R + V L E + G RAGA+ +L+KPF+ L + L Q+ Sbjct: 714 ELLHALRSDETTRAIPVIMLSARAGQEAQVEGLRAGADDYLVKPFSARELLARIASLLQL 773 Query: 121 QKSKDE 126 +++ Sbjct: 774 VSVREQ 779 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + L G V A A P +++D + G+ Sbjct: 1168 RILVVDDNIDAADTLAMLLRLLGAEVEIARDGPGALAM-HAAFRPEVVLLDIGLPGMDGL 1226 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +R V + L E + AG + L+KP + +TL + Sbjct: 1227 EVARRIRAEHGRDQVVLIALTGWGQEEDLRRSREAGMDHHLVKPVSFDTLERLL 1280 >gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family [Chlorobium phaeovibrioides DSM 265] Length = 236 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+V+ + K+ + G+ + + +A + + + +++D + G+ F Sbjct: 6 LLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSR-RSFDLVLLDVMLPGIDGFE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + D+ + L + + I G G + +++KPF+ L +R + + Sbjct: 65 VCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRD 124 Query: 122 KSK 124 + + Sbjct: 125 RRQ 127 >gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 234 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G++ +A++ EA E + + + +++D M + Sbjct: 5 KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNV-HLIILDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 EACMKIREE-KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120 >gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ + + ++ G+ V EA + E + ++D M Sbjct: 2 RILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADY-DAAILDIMMPRRNGY 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R + G + V +L +AG GA+ +L+KPF+ + L +R L + Sbjct: 61 EVLKRLRSL--GKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRK 118 Query: 121 QKSKD 125 + + Sbjct: 119 RSTHR 123 >gi|224026502|ref|ZP_03644868.1| hypothetical protein BACCOPRO_03259 [Bacteroides coprophilus DSM 18228] gi|224019738|gb|EEF77736.1| hypothetical protein BACCOPRO_03259 [Bacteroides coprophilus DSM 18228] Length = 1330 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R ++ + V A + EA E + + P+ ++ D M + Sbjct: 1076 ILIVEDNISLRAFLMQSLSET-YRVEGAGNGQEALELIQNQ-QPDLVLSDVMMPIMDGQE 1133 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + + L D E ++ G A+ +++KPF+ L + + + + Sbjct: 1134 LCKNLKSNIETSHIPIILLTALGDKEYILKGLGNKADLYIVKPFDLTVLLANISNVLENR 1193 Query: 122 KSKDE 126 + Sbjct: 1194 ELIRR 1198 >gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662] gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662] Length = 245 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A + EA + ++ + ++ D M G+ Sbjct: 15 KILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLII-DIMMPGMDGL 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G GA+ ++ KPF + L ++ + Sbjct: 74 SATMKIRES-KNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRR 130 >gi|150002641|ref|YP_001297385.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931065|gb|ABR37763.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1349 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ + E+ + EA E P+ ++ D M + Sbjct: 1090 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1147 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA++++ KPF+ E LR L + Sbjct: 1148 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTTANLIRS 1207 Query: 120 MQKSKD 125 ++ ++ Sbjct: 1208 RERLRN 1213 >gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + G+ V +A E P+ +V+D + Sbjct: 6 QRILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDE-APDLVVLDIMLPELNG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +RQ G D V L + I G GA+ +++KPF + L ++ + + Sbjct: 65 FDVLKELRQR--GRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLR 122 Query: 120 MQK 122 + Sbjct: 123 RRH 125 >gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp. subtilis str. 168] gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp. subtilis str. 168] gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp. subtilis str. SMY] gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yrkP gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis] gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp. subtilis str. 168] Length = 231 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 7/132 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + G+ V A A + + +++D M G + Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV--NDSLDLVILDIMMPGISGI 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E H+R+ ++V + +L G AG + ++ KPF+ E L + + Sbjct: 62 ETCQHIRKS---SNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118 Query: 121 QKSKDENQFLDA 132 E + + Sbjct: 119 YTIYQEKKEQEE 130 >gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium resistens DSM 45100] Length = 231 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D VR+ R G+ V A+ EA E E P+ ++D M L Sbjct: 2 KILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASE-RPDLAILDVMMPRRDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R G D+ + L + +AG AGA+ +L KPF E L R L + Sbjct: 61 EVCRELRSH--GDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRR 118 >gi|294646909|ref|ZP_06724530.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292637854|gb|EFF56251.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1347 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LLLV+ + R + DF + + EA E +E PN ++ D M Sbjct: 1095 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1152 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + V L + I GA+S++ KPFN + L + +L + Sbjct: 1153 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1212 Query: 120 MQKSKDEN 127 Q+ + + Sbjct: 1213 QQEKRKQE 1220 >gi|293410584|ref|ZP_06654160.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli B354] gi|291471052|gb|EFF13536.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli B354] Length = 461 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF + A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETYCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L+++ + + + G+ + A + + +E + + +++D + + Sbjct: 1 MKNTILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENV-DLILLDIMLPSM 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F H+R+ V + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 NGFDVCRHIREKSS---VPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKAN 116 Query: 118 PQM 120 + Sbjct: 117 IRR 119 >gi|237797944|ref|ZP_04586405.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020795|gb|EGI00852.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 246 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ +V + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R V + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM 20544] gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM 20544] Length = 233 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + GF V A ++ + +++D + G+ Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMA-RQDQYDLILLDIMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R++ +V V + + ++ G GA+ +++KPFN L +R Sbjct: 60 GFAVC-RELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIAR 118 Query: 121 QK 122 + Sbjct: 119 YE 120 >gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 719 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 44/121 (36%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + + H + GF V A + EA + + + +++D M + Sbjct: 599 RILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALDLLDNSGPFDVILMDVQMPEMDGL 658 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A + G ++ + L G +++ KP N + L + +L K Sbjct: 659 EATKKIREQGNEIPIIALTAYAMEGDREKFLSNGMDAYSSKPVNIDELVQIIGKLVPRTK 718 Query: 123 S 123 Sbjct: 719 Q 719 >gi|172039201|ref|YP_001805702.1| putative two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700655|gb|ACB53636.1| putative two-component response regulator [Cyanothece sp. ATCC 51142] Length = 608 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD + +V + + G+ V +AT A K L P+ +++D M + Sbjct: 24 KDILIVDDTIENLRVLSSILIEQGYSVRKATGGKMAL-KVVKTLPPDLIMLDIMMGDMSG 82 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +++ P D+ V +L D + G ++ KPF E + ++ Sbjct: 83 YEVCQKLKENPDTADIPVIFLSALDDVFDKVKAFEMGGVDYISKPFQMEEVLVRVKNQLA 142 Query: 120 MQKSKDENQFLDA 132 ++ ++ E L+A Sbjct: 143 LRTAQKEVYQLNA 155 >gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 235 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +R + G+ +A EA + E + +++D M + Sbjct: 5 SILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIE-NTDVDIVILDVMMPNLNGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + ++ + L + + I G GA+ +L KPFN L ++ + Sbjct: 64 ETCLKIREM-KEMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRR 120 >gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9301] gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEG-- 58 +LLV+ +R + GF V A +F + + +++D + G Sbjct: 13 RILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + L + + + G GA+ +L KPF L R L Sbjct: 73 GLELCRKIRNDEDY--TPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALI 130 Query: 119 QMQKSKDEN 127 + K +N Sbjct: 131 RRSKRNKKN 139 >gi|66043528|ref|YP_233369.1| osmolarity response regulator [Pseudomonas syringae pv. syringae B728a] gi|302188958|ref|ZP_07265631.1| osmolarity response regulator [Pseudomonas syringae pv. syringae 642] gi|63254235|gb|AAY35331.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330901510|gb|EGH32929.1| osmolarity response regulator [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943280|gb|EGH45670.1| osmolarity response regulator [Pseudomonas syringae pv. pisi str. 1704B] gi|330972160|gb|EGH72226.1| osmolarity response regulator [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977296|gb|EGH77250.1| osmolarity response regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 246 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ +V + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R V + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.] Length = 1155 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 5/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+VD + +R + G+ V+ A + E +EL PN +V D M L Sbjct: 798 SILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKV-QELTPNLIVTDLMMPLVTGL 856 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I VR + L +VD E I GA+++L KPFN L +R L + Sbjct: 857 EMIRMVRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLAL 916 Query: 121 QKSKDENQFLD 131 +++ E + L+ Sbjct: 917 KEN--EKRVLE 925 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 2/117 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + F + V A S A + +E ++ D+ M + Sbjct: 10 KILVVDDEPDNLDLLYRTF-YRDYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP 118 D+ L D E ++ AG ++ KP+ E L+ +R+ Sbjct: 69 EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQAL 125 >gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92] gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + +R L D G+ +A++ EA P+ +++D M G+ + Sbjct: 2 KVLIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMH-QPDLVLLDIMMPGMDGY 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + L V V ++ + + + G GA+ ++ KPF + + + + Sbjct: 61 AVCRKIRQLNEQVPVIFITAKSEEIDQVLGLELGADDYIKKPFGTREVIARINAVIRRCN 120 Query: 123 SKDENQFLD 131 + ++ Sbjct: 121 KALPAEQIE 129 >gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 222 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + ++ G+MV A A ++ P+ +++D M G+ F Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGISALLRIQR-RRPDLILLDAMMPGMDGFE 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q P +++ V ++ D E ++ G AGA ++ KP + + + Sbjct: 72 TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVTKPIQCNEMIARVASHLRTA 131 Query: 122 KSKDENQ 128 ++ + Sbjct: 132 RTLQSAR 138 >gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A E + + +V+D + G+ Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPGALE-AGMQGGVDLVVLDLGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 7 RLLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTQQTI 132 >gi|255035253|ref|YP_003085874.1| multi-sensor signal transduction histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948009|gb|ACT92709.1| multi-sensor signal transduction histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1118 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+ D + +R+ + L + A++ EA E + P ++ D M + Sbjct: 625 VLIADDNADMRQHIQSLLGSE-YDTLTASNGVEALEIIRRH-RPALVLSDVMMPEMDGIA 682 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V+ P+ + + E I G GA+ +++KPF+ L + +M Sbjct: 683 LLKAVKNDPVIAQTPIILITARAGEESRIEGIEIGADDYIVKPFSSRELIVRAQAQMRMS 742 Query: 122 KSKDENQ 128 ++ + + Sbjct: 743 SARSKIE 749 >gi|226330037|ref|ZP_03805555.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198] gi|225200832|gb|EEG83186.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198] Length = 227 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + + R GF V+EA P+ +++D + Sbjct: 5 NILIIEDEKEILRFVRLALESEGFRVYEANECQRGL-IEAASRKPDLVILDLGLPDKDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + L + + AGA+ +L KPF L +R + Sbjct: 64 C-FIQDFRQWSSTPIIVLSARDSEQDKVKALDAGADDYLTKPFGISELLARIRASLRR 120 >gi|224538239|ref|ZP_03678778.1| hypothetical protein BACCELL_03130 [Bacteroides cellulosilyticus DSM 14838] gi|224520171|gb|EEF89276.1| hypothetical protein BACCELL_03130 [Bacteroides cellulosilyticus DSM 14838] Length = 1490 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 LLV+ + +R R +F + + EA + K LP+ ++ D M G Sbjct: 1223 LLVEDNSELRLFLRSIFASE-YRIVEAVDGMQGWSKALK-FLPDIIISDVMMPGKDGITM 1280 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ ++ L Q + Sbjct: 1281 TRELRADMTTSHIPIVLLTAKTSIESKLEGLEYGADDYITKPFSATYLKARVKNLLTQRR 1340 Query: 122 KSK 124 K + Sbjct: 1341 KLQ 1343 >gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ + + + F G+ V + E + +++D + G+ Sbjct: 1 MKEKILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEAL-EGDYDLVLLDIMLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++++ +D+ V L + + + + G GA+ ++ KPF+ E L +R + Sbjct: 60 DGY-EVLKKIRENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALR 118 Query: 120 MQK 122 + Sbjct: 119 KRN 121 >gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 227 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD R G+ V A EA + E P+ +V D M + Sbjct: 4 TILVVDDDLGTRLSVSDYLELSGYSVITANDGQEALFMVD-EYNPDLIVTDIIMPQMNGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + VRQ + + V L ++ I G ++G + +L KPF E L A+R L + Sbjct: 63 ELVRRVRQQAMFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLER 122 Query: 121 QK 122 + Sbjct: 123 SQ 124 >gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A + P+ +++D + G Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-HDTKPDLVLLDLMLPGR 63 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V V L + D ++ G +GA+ +++KPF + L +R Sbjct: 64 DGIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120 Query: 118 PQMQKSKDENQF 129 + + Q Sbjct: 121 LRRSEEPAPEQL 132 >gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ + GF EA EA + + +V+D M + Sbjct: 10 MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + + + G G + +L KPF+ L +R L + Sbjct: 69 GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128 Query: 121 QK 122 K Sbjct: 129 YK 130 >gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 236 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ + GF EA EA + + +V+D M + Sbjct: 13 MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 71 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + + + G G + +L KPF+ L +R L + Sbjct: 72 GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 131 Query: 121 QK 122 K Sbjct: 132 YK 133 >gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1166 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + G V A + + + + + +++D M + Sbjct: 1037 RTVLVVDDDARNLFALSGILELHGIQVLHAENGRKGIDALAEHPDIDLILMDVMMPEMDG 1096 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R+MP D+ + + + AGA+ ++ KP + + L +R Sbjct: 1097 YAATAEIRRMPAHADLPIVTVTAKAMPGDREKSLAAGASDYVTKPVDADDLIACVRRWL 1155 >gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002] gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002] Length = 232 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFND-FGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++LLVD VR+ + D V A + +A + + P+ ++ D M Sbjct: 6 NILLVDDEPGVREAVQAYLEDDEALTVTTAENATKAWDVLQT-FTPDLVISDIMMPQVDG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +F+ +R+ P + V +L I G +AG +++L KPF E L ++ L Sbjct: 65 YQFLGQLREDPRFKTLPVIFLTARGMTGDRIQGYQAGCDAYLPKPFEPEELEAIVKNLLT 124 Query: 120 MQKSKDENQ 128 + + E Q Sbjct: 125 REAAIAEQQ 133 >gi|162450210|ref|YP_001612577.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161160792|emb|CAN92097.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 561 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 4/124 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + GF V A A +E +P+ +++D M+G+ F Sbjct: 8 TILIVDDNPRNLGLLSDTLTGSGFEVAVAVDGARAL-RLAREGMPDLILLDVKMDGMDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFE-KMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ P + V ++ D + G GA +L KPF E L +R + Sbjct: 67 ETCRRLKGDPATAAIPVIFMTASTDLSADRVKGLNLGAVDYLAKPFLDEELLARVRVHTK 126 Query: 120 MQKS 123 +++ Sbjct: 127 LRRL 130 >gi|197121525|ref|YP_002133476.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171374|gb|ACG72347.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. K] Length = 501 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +R+ R + G+ V EA S + E + E + + V D + G+ Sbjct: 29 SILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPV-DLGVFDIRLPGMDGL 87 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R L D+ V + D ++ + GA F KP +R+ + ++R + Sbjct: 88 TLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRD 147 Query: 123 SKDENQFLDA 132 + + Q L A Sbjct: 148 LEGKVQALSA 157 >gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032] gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032] Length = 231 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 8/135 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+V+ + + + G+ V A + +A +F + + +++D M G Sbjct: 1 MTHRILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQALKFV--DDSLDLVILDVMMPGL 58 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R ++V + +L + G AG + ++ KPF++E L + Sbjct: 59 SGIETCQQMRAS---SNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQ 115 Query: 118 PQMQKSKDENQFLDA 132 + E + + Sbjct: 116 LRRYTVYQEKKEQEE 130 >gi|160901173|ref|YP_001566755.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160366757|gb|ABX38370.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 342 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+ + + + A +A E L P+ +++D M + Sbjct: 116 ILVAEDEPEIADILCAYLARSDLRTVHAADGQQALE-LHHHLKPDLVLLDVQMPRLDGWQ 174 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 ++ +R+ D V L + G R GA+ ++ KPFN + ++ + + Sbjct: 175 VLSEIRRRG---DTPVIMLTALNQDVDKLIGLRIGADDYVGKPFNAAEVVARVQAVLRRC 231 Query: 121 -QKSKDENQFLDA 132 Q + + L A Sbjct: 232 GQGRLRDTKLLQA 244 >gi|117926352|ref|YP_866969.1| response regulator receiver modulated metal dependent phosphohydrolase [Magnetococcus sp. MC-1] gi|117610108|gb|ABK45563.1| response regulator receiver modulated metal dependent phosphohydrolase [Magnetococcus sp. MC-1] Length = 353 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 4/133 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ +D + + A +A + P+ +++D M G+ Sbjct: 1 MKQKILVVDDAPANLRILVESLSDE-YSIAAARDGHKAIALANAKHRPDLILLDVMMPGL 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++ P D+ V ++ D E + G G F+ KPFN ++ +R Sbjct: 60 DGFEVCLKLKADPATWDIPVLFITALNDEENEVRGLTVGGVDFISKPFNPALVKARVRSH 119 Query: 118 PQMQKSKDENQFL 130 +++ +D + L Sbjct: 120 LELKSHRDRLEEL 132 >gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630] gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile QCD-63q42] gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile CD196] gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile R20291] gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08] gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07] gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile] gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile CD196] gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile R20291] gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08] gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07] Length = 222 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+++ ++++ + G+ V A E + ++ + +++D M Sbjct: 4 SILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSY-DLVILDIMMPNLDGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + +L D + G + ++ KPF+ L + + + Sbjct: 63 GVCKMIRKSSS---VPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR 119 Query: 121 QK 122 Sbjct: 120 SN 121 >gi|90414946|ref|ZP_01222909.1| putative transcriptional regulator CpxR [Photobacterium profundum 3TCK] gi|90323946|gb|EAS40544.1| putative transcriptional regulator CpxR [Photobacterium profundum 3TCK] Length = 222 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 2/131 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD ++ ++ + ++ G+ V A + + + + +++D + + Sbjct: 1 MSNILVVDDDVMLCELLTEVLSEEGYDVHCLHDGESALTYMQAHSV-DLVLLDVMLPNID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L D M+ G +AGA+ ++ KPF L + + + Sbjct: 60 GLQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADQYVAKPFRVPELLARITSILRR 118 Query: 121 QKSKDENQFLD 131 + + Q L+ Sbjct: 119 VGLERQRQGLN 129 >gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum] Length = 2062 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 8/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL + + + +++ L FG V A + +A + + +++D M G E Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVAS-SQLRKFDLILMDVQMPHCGGFE 1789 Query: 62 FIAHVRQ--MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A +R+ G + + + AG + ++ KP N + L+ + + Sbjct: 1790 ATAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYLF 1849 Query: 120 MQK---SKDENQFLDA 132 + K S ++ Q L A Sbjct: 1850 ISKSCNSYEQFQQLQA 1865 Score = 49.8 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 27/135 (20%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE----LLPNYLVIDESM---- 56 L+VD + KV + + ++FG + + +A K ++ +D + Sbjct: 1592 LIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTKPFEFIFVDAQLGTSL 1651 Query: 57 -EGVLEFIAHVRQMPLGTDVFVYYL-LM---EVDFEKMIAGARAGANSFLLKPFNRETLR 111 + ++E + + L + +L KP + + Sbjct: 1652 IDMMVE------KNMNHCKTKIIMLISGGGQRGYPDSSSNFI----TGYLSKPVSPSEIF 1701 Query: 112 FAMRELPQMQKSKDE 126 + Q + Sbjct: 1702 D----ILTRQGITRQ 1712 >gi|251793482|ref|YP_003008211.1| CpxR [Aggregatibacter aphrophilus NJ8700] gi|247534878|gb|ACS98124.1| CpxR [Aggregatibacter aphrophilus NJ8700] Length = 231 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + ++ L + GF + A + EA + + +++D M Sbjct: 1 MAKILLVDDDAELTELLAQLLDLEGFEINVANNGKEALALL--DHSYDLILLDIMMPILN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R+ V L D I G GA+ +L KPFN L ++ + Sbjct: 59 GIETLKQIRKDFS---TPVMMLTARGDDIDRILGLELGADDYLQKPFNDRELVARIKAIL 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|188997385|ref|YP_001931636.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188932452|gb|ACD67082.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 219 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + R + G++V A EA F E + +++D + + Sbjct: 2 KILLVEDNLDLNNTIREVLELNGYVVDSAFDGKEALNFIENSSY-DVIILDLMLPDIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G D V L + + I G GA+ ++ KPF+ + L +R + + Sbjct: 61 EVLKTIRNKGIDTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGRRVS 120 Query: 123 SKDENQFL 130 ++ ++ L Sbjct: 121 AEKKDIVL 128 >gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ +R + F V EA + + + EK + V+D + G+ Sbjct: 1 MSRILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEK-FSIDLAVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L I G GA+ +++KPFN L ++ + Sbjct: 60 GFKVCDELRKR--YPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAIL 117 Query: 119 QMQKSKDE 126 + + + Sbjct: 118 RRIGDEKQ 125 >gi|138893945|ref|YP_001124398.1| subtilin biosynthesis regulatory protein SpaR [Geobacillus thermodenitrificans NG80-2] gi|196250503|ref|ZP_03149194.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265458|gb|ABO65653.1| Subtilin biosynthesis regulatory protein SpaR [Geobacillus thermodenitrificans NG80-2] gi|196209993|gb|EDY04761.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 232 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 47/130 (36%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + V S EA + + +V+D MEG+ Sbjct: 4 KKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMI--NDDFDLIVLDIMMEGIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + ++ + E + G + ++ KPF+ + L+ + + Sbjct: 62 MELCTIIRDRVDY---PIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLR 118 Query: 120 MQKSKDENQF 129 ++ N+ Sbjct: 119 REERIRSNER 128 >gi|119489834|ref|ZP_01622589.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119454262|gb|EAW35413.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 506 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L++D + ++ L G+ V S A + +K P+ +++D M E Sbjct: 14 ILIIDDTPENLQLMVQLLTSVGYQVRAYISGNIALQGIKKTP-PDLILLDVMMPEISGYE 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 ++ P D+ V ++ + + G ++ KPF+ E + ++ + Sbjct: 73 VCQKLKSDPETQDIPVIFISAMNTAIDKVKAFQVGGVDYITKPFHVEEVLARVQIQLENR 132 Query: 120 --MQKSKDENQFL-DAI 133 Q + +NQ L +A+ Sbjct: 133 CLRQSLQAKNQELSEAL 149 >gi|113955138|ref|YP_730441.1| two-component response regulator [Synechococcus sp. CC9311] gi|113882489|gb|ABI47447.1| two-component response regulator [Synechococcus sp. CC9311] Length = 255 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 + +VD +R++ D G+ V + V + E + P+ +V+D M G Sbjct: 21 IWVVDDDPELRQMVGTYLIDQGYDVRCLSDVKQ-LEARLEFQRPDLIVLDLMMPGDDGLT 79 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A R G D+ V L D I G GA+ +L KPF L + + + + S Sbjct: 80 ALRRLRDAGDDLPVVMLTARGDGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRSS 139 >gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 239 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R GF V AT+ A E P+ +++D + + F Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAA-RPDLMILDVMLPDIDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V V YL IAG G + ++ KPF + L +R + + Sbjct: 65 EICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRR 122 >gi|322804938|emb|CBZ02497.1| putative two component response regulator transcriptional regulatory protein [Clostridium botulinum H04402 065] Length = 217 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R++ G+ V EA+ A + E + +++D + + Sbjct: 1 MKKVLVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIE-NTYLDIILLDIMLPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G + V ++ + D + G + GA+ ++ KPF L + + + Sbjct: 60 GFS--IISKISGKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRR 117 Query: 121 QKSKDE 126 +E Sbjct: 118 CDKMEE 123 >gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 231 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + GF V +A EA E EK + N +++D M G+ Sbjct: 1 MPTILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLEKNEV-NLMIVDVMMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRTTLKVRE-TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118 >gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine gamma proteobacterium HTCC2148] gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine gamma proteobacterium HTCC2148] Length = 234 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+V+ +R + R + EA ++ +A + P+ +++D + G L Sbjct: 5 TVLVVEDEKAIRDMLRMALEVAKYRFIEAENIRDA-HVLIVDERPDIVLLDWMLPGGSGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +++ ++ V L + + +I G GA+ ++ KPF L ++ L + Sbjct: 64 ELLRRLKREDNTREIPVIMLTAKAAEDNVIQGLEVGADDYVTKPFAPRELIARIQALLRR 123 >gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 225 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + + G V EA EA + C +E + +V+D M + Sbjct: 1 MYKILIVDDEAGIRNIIKKYAVFEGHEVEEAADGMEAIQVC-REKEFDIIVMDVMMPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +++ + V L + I G G + +++KPF+ + L + + + Sbjct: 60 GFSAC-KEIKKFSKAPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVKR 118 Query: 121 QKSKDENQ 128 + + + Sbjct: 119 SRGTSDTE 126 >gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + F V + E E + +++D + G+ Sbjct: 1 MSRILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEE-FDLIILDLMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F H+R+ DV + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEVCKHIREK---KDVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHM 116 Query: 119 QM 120 Sbjct: 117 AR 118 >gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 241 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + +++ EA EA E + +++D + G + Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDY-DVILLDLMLPGKDGI 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 E +R+ + L + + + G G + +++KPF+ + ++ Sbjct: 68 EVCKEIREQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119 >gi|294646991|ref|ZP_06724608.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806380|ref|ZP_06765223.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292637662|gb|EFF56063.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294446395|gb|EFG15019.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1339 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R F D F + E+ + EA E K+ P+ ++ D M + Sbjct: 1084 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGL 1141 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA+++++KPFN E L+ + L Sbjct: 1142 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1201 Query: 120 MQKSKD 125 Q+ + Sbjct: 1202 RQQLRK 1207 >gi|260361519|ref|ZP_05774566.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus K5030] gi|308112856|gb|EFO50396.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus K5030] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL+D + + + + + GF V EA + +++D M + Sbjct: 3 NILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAI--NSDIDLILLDVMMPKLNGM 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 61 ETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTS 119 Query: 123 SKDEN 127 + +N Sbjct: 120 NTQKN 124 >gi|237715395|ref|ZP_04545876.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405239|ref|ZP_06081789.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229444704|gb|EEO50495.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356114|gb|EEZ05204.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1348 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R F D F + E+ + EA E K+ P+ ++ D M + Sbjct: 1093 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGL 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA+++++KPFN E L+ + L Sbjct: 1151 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1210 Query: 120 MQKSKD 125 Q+ + Sbjct: 1211 RQQLRK 1216 >gi|171914206|ref|ZP_02929676.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains (modular protein) [Verrucomicrobium spinosum DSM 4136] Length = 2178 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD L + V T+ +A + E+ + +++D M + Sbjct: 2058 RKVLVVDDDARNIFALSILLENHDMEVLSVTNGRQAVKLIEENPDLSMVLMDIMMPEMDG 2117 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ P + + L + AGA+ ++ KP N E L +R Sbjct: 2118 YQTMREIRKNPEFRTLPIIALTAKAMKGDREKCLEAGASDYIAKPVNTEQLLSLLRVWLH 2177 Query: 120 M 120 Sbjct: 2178 R 2178 Score = 84.1 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 4/115 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M LL+V+ + I R+ + L + EA + + V+D + + Sbjct: 1911 MKRLLVVEDNEIERESIKELLGGRDIQIVTVGRGKEALGLLLDQH-FDCAVLDLRLPDMS 1969 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + +++ P +V + + R A S +LK + E L Sbjct: 1970 GFELLETIQKEPTLQEVPIVVYTGKDLSPDEEKQLRQVAKSVVLKDVQSPERLLD 2024 Score = 77.5 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+V+ +V L D GF AT +A ++ + +D + +L + Sbjct: 1792 LLIVEDDVHYARVLLGLARDRGFKGLVATRGQQALALA-RQYQVTAITLDIFLPDMLGWT 1850 Query: 64 AH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ P + V + E+ G GA S+++KP + L A + Sbjct: 1851 VLNNLKLDPTTRHIPVQIIS---LDEERRHGLSRGAFSYMVKPATTDDLEMAFDRI 1903 >gi|21225798|ref|NP_631577.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783167|ref|ZP_05521598.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767048|ref|ZP_06526426.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799269|emb|CAB90891.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697247|gb|EFD64676.1| two-component system response regulator [Streptomyces lividans TK24] Length = 233 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LL++ V++ G V A S E+ P+ +++D + + Sbjct: 1 MARVLLIEDDPAVQRGVSLALKRRGHEVAVAGSGETGLLTLERH-RPDLVLLDLMLPNMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + + L D M+ G AGA+ +++KP E L +R + Sbjct: 60 GLEVCRRIRES---KRIPIIILSARGDEIDMVVGLEAGADDYIVKPAGAELLEARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V A + + + E+ + +++D + G E Sbjct: 2 LVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRSR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDE 126 +E Sbjct: 118 EPEE 121 >gi|284050982|ref|ZP_06381192.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira platensis str. Paraca] Length = 592 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + G+ V +A + A K + P+ +++D M G+ Sbjct: 8 ILVVDDKPENLHLLSEILMLEGYNVRKAVNGKMAL-MAVKTVQPDLILLDIMMPGMDGYQ 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ V V +L D + AG ++ KPF E + ++ ++ Sbjct: 67 VCKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDYITKPFQMEEVLVRVQNHLMLK 126 Query: 122 KSKDE----NQFLDA 132 +++ + N L+A Sbjct: 127 EAEKKILELNTELEA 141 >gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F + + V EA EA E+E + + +++D + + Sbjct: 3 KTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEV-HLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQ 121 + Sbjct: 119 SR 120 >gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 239 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + ++ + G+ + + + +++D + G+ F Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRN-FDLIILDIMLPGLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + L E+++ G + GA+ ++ KPF L + + + + Sbjct: 63 EILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQ 122 Query: 123 SKD 125 D Sbjct: 123 QDD 125 >gi|168182838|ref|ZP_02617502.1| regulatory protein VanR [Clostridium botulinum Bf] gi|237794279|ref|YP_002861831.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657] gi|182674012|gb|EDT85973.1| regulatory protein VanR [Clostridium botulinum Bf] gi|229263114|gb|ACQ54147.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657] Length = 236 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD +R + + + EA + +A E + +++D M + Sbjct: 1 MYNILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNAL-HENEIHLILLDVMMPIMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++V + +L + + + G G + ++ KPFN L ++ + Sbjct: 60 GIEVAQKIR-TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALRR 118 >gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 240 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 56/130 (43%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 +L++D + K+ + GF ++ A ++ + P+ +++D + Sbjct: 8 KKILIIDDEEDILKLLSMVLKKEGFENIYTAEDGEGGFTLFKR-ISPDIILLDIMLPDEE 66 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ ++V + ++ + + + G G + ++ KPF+ + + + ++ + Sbjct: 67 GYEVCKKIRKS---SNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAIL 123 Query: 119 QMQKSKDENQ 128 + DE + Sbjct: 124 RRSSYHDEEE 133 >gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4] gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4] Length = 2062 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 8/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL + + + +++ L FG V A + +A + + +++D M G E Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVAS-SQLRKFDLILMDVQMPHCGGFE 1789 Query: 62 FIAHVRQ--MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A +R+ G + + + AG + ++ KP N + L+ + + Sbjct: 1790 ATAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYLF 1849 Query: 120 MQK---SKDENQFLDA 132 + K S ++ Q L A Sbjct: 1850 ISKSCNSYEQFQQLQA 1865 Score = 49.8 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 27/135 (20%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE----LLPNYLVIDESM---- 56 L+VD + KV + + ++FG + + +A K ++ +D + Sbjct: 1592 LIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTKPFEFIFVDAQLGTSL 1651 Query: 57 -EGVLEFIAHVRQMPLGTDVFVYYL-LM---EVDFEKMIAGARAGANSFLLKPFNRETLR 111 + ++E + + L + +L KP + + Sbjct: 1652 IDMMVE------KNMNHCKTKIIMLISGGGQRGYPDSSSNFI----TGYLSKPVSPSEIF 1701 Query: 112 FAMRELPQMQKSKDE 126 + Q + Sbjct: 1702 D----ILTRQGITRQ 1712 >gi|157825448|ref|YP_001493168.1| response regulator PleD [Rickettsia akari str. Hartford] gi|157799406|gb|ABV74660.1| response regulator PleD [Rickettsia akari str. Hartford] Length = 450 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDTVLLDVMMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ P T V V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GFEVCKTIKTNPETTHVPVVMVTALSDVDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ I K + + V ++ E + E P+ ++I ++E Sbjct: 152 KKILLINDDVIQAKNIKQMLLKITQNVKVISNSDE-LDII-NEYTPDLVIISSTLENEDP 209 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V + + E ++ G G N + + P L +R + Sbjct: 210 LRISVILRGKEEIRGVVIILQIDEDGMPLVVKGIELGVNDYFVYPIEESELLARIRTQLR 269 Query: 120 MQKSKD 125 ++ +D Sbjct: 270 RKQYQD 275 >gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ R G+ + EA + A E E E P+ +++D + G+ Sbjct: 7 RILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEK-PDLVLLDLGLPGMSGH 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ V L D ++ GA+ ++ KPF L +R + + Sbjct: 66 ELLRKWRDDGLDIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALRHKF 125 Query: 123 SKD 125 + Sbjct: 126 QQQ 128 >gi|299145134|ref|ZP_07038202.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298515625|gb|EFI39506.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1314 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 8/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 ++L+VD + + + F G+ + A EA + +P+ +V D M + Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +++ + + V L + D + +I+G + GA+ +L KPF E L +R Sbjct: 1115 GYELCKTIKEDIAISHIPVILLTAKDDKQSLISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 Query: 119 QMQKSKDENQFLDA 132 + ++ + ++L+A Sbjct: 1175 KNREYTKK-RYLNA 1187 >gi|295134774|ref|YP_003585450.1| histidine kinase [Zunongwangia profunda SM-A87] gi|294982789|gb|ADF53254.1| histidine kinase [Zunongwangia profunda SM-A87] Length = 743 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + F ++ A + E E +K P+ ++ D M + Sbjct: 499 SILIVEDHPDFQDFLFSEL-KEDFNIYTAKNGLEGLEQVKKHH-PDLVISDIMMPVMTGI 556 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + V L E + G A A++++ KPFN E L+ + L Q Sbjct: 557 TLCHNIKSDIEISHIPVILLSARSSEESKLKGFEAKADAYMDKPFNLEILKQRIENLVQE 616 Query: 121 QKSKDE 126 Q+S+ E Sbjct: 617 QQSRKE 622 >gi|260172959|ref|ZP_05759371.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315921239|ref|ZP_07917479.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313695114|gb|EFS31949.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1372 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F D F V A + E ++ +P+ +V D M + Sbjct: 1113 LLIVEDNEEIQKYIVESFTDS-FEVITANNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 ++ + + + L + + G GA+S+L KPF+ LR + L Sbjct: 1171 LCKQLKDDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLDSR 1230 Query: 121 QKSKDE 126 +K + Sbjct: 1231 KKLVAQ 1236 >gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 235 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V S EA +E P+ ++D M G+ F Sbjct: 9 KVLVVDDEPNIVELLTVSLRFQGFEVESVNSGSEAL-KVAREFRPDAYILDVMMPGMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D V +L + E I G GA+ ++ KPF+ E + +R + + Sbjct: 68 ELLSKLRADGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 125 >gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Persephonella marina EX-H1] gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Persephonella marina EX-H1] Length = 228 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + +V+ + ++ + GF V + EA K P+ +V+D + + Sbjct: 1 MSLIYVVEDDEDINELLVYNLKKEGFSVRSFLNSKEAYRNI-KSDYPDLIVLDIMLPDMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ ++ + L + I G GA+ ++ KPF+ L ++ + Sbjct: 60 GLEFCKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVL 119 Query: 119 QMQK 122 + K Sbjct: 120 KRSK 123 >gi|153869727|ref|ZP_01999263.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073808|gb|EDN70738.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 207 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLE 61 ++L+VD S + V H F V S EA +F P+ +++D M G+ Sbjct: 6 TILIVDDSAVSTTVLSHFLTLNDFKVLVERSGDEALQFMNSASSKPDLILLDVMMPGISG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++Q ++ + ++ D I GA ++ KPF +E + + Sbjct: 66 FETCKELKQNTKTQEIPIIFMTALSDTGDKIKAFELGAVDYVTKPFQQEEVLARINTHLT 125 Query: 120 MQKSKDEN 127 + + + + Sbjct: 126 LCRLQQQL 133 >gi|119899743|ref|YP_934956.1| pilus protein [Azoarcus sp. BH72] gi|119672156|emb|CAL96070.1| pilus protein [Azoarcus sp. BH72] Length = 121 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 3/118 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD S R L G+ V A S EA K P+ +++D M G+ Sbjct: 4 NKILVVDDSPTERLALTELLTRHGYQVATAESGEEAITK-SKSEKPDLILMDVVMPGMNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + ++ + + I G R GA +L+KP L ++ + Sbjct: 63 YQATRTISRDDATRNIPIIMCTSKGLETDKIWGMRQGAYDYLVKPVEHNELLARIKSI 120 >gi|126700337|ref|YP_001089234.1| two-component response regulator [Clostridium difficile 630] gi|254976316|ref|ZP_05272788.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255093701|ref|ZP_05323179.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255101892|ref|ZP_05330869.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255307761|ref|ZP_05351932.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255315453|ref|ZP_05357036.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518116|ref|ZP_05385792.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651233|ref|ZP_05398135.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684297|ref|YP_003215582.1| two-component response regulator [Clostridium difficile CD196] gi|260687956|ref|YP_003219090.1| two-component response regulator [Clostridium difficile R20291] gi|115251774|emb|CAJ69609.1| Two-component response regulator [Clostridium difficile] gi|260210460|emb|CBA64917.1| two-component response regulator [Clostridium difficile CD196] gi|260213973|emb|CBE06070.1| two-component response regulator [Clostridium difficile R20291] Length = 234 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 11/133 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + +R++ L G+ V AT+ EA + + +++D M Sbjct: 7 KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDST--IDLIILDVVMPVKTG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ T + +L + + G AG + +L KPF+ L ++ L + Sbjct: 65 FVACNEIREK---TTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLR 121 Query: 120 M----QKSKDENQ 128 Q + E + Sbjct: 122 RYYIYQGKEKERE 134 >gi|17228726|ref|NP_485274.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130578|dbj|BAB73188.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 387 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+++ VR+ L GF + EA + + ++E +P+ ++ D M Sbjct: 1 MNKILVIEDDIHVRQNILDLLEGEGFNILEAHNGLLGVQLAQEE-IPDLIICDVMMPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-EL 117 E + +RQ P + + +L + D G GA+ +++KPF R L A+ L Sbjct: 60 GYEVLKALRQCPETAIIPLIFLTAKSDKNDFRQGMEMGADDYIIKPFTRAELLAAIACRL 119 Query: 118 PQMQKSKDENQF 129 + K ENQ Sbjct: 120 EKHITIKQENQR 131 >gi|134292232|ref|YP_001115968.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135389|gb|ABO56503.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 246 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E R + + P+ +V+D + G Sbjct: 7 VLIVDDDRAIRELIADYLEKNGMRVSVAANGREMRNLLD-DGAPDLIVLDLMLPGEDGLA 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRDLRA-GRFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|300725823|ref|ZP_07059289.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] gi|299776870|gb|EFI73414.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] Length = 1390 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 4/120 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+V+ +H + + F F V +A + E E +P+ ++ D M + Sbjct: 1080 LVVEDNHDILEYVTASFAQH-FTVKQAQNGQEGLAIAL-ETIPDIIISDIMMPKMNGNMM 1137 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +++ + + L + + + G AGA+S++ KPF L + L Q +K Sbjct: 1138 CRTLKEDMRTCHIPIILLTAKDSNDAKVEGYEAGADSYITKPFTHAILESRVNNLLQQRK 1197 >gi|284050134|ref|ZP_06380344.1| response regulator receiver Signal transduction histidine kinase [Arthrospira platensis str. Paraca] Length = 372 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L VD S + + D G+ V+ A + E P +++D M G E Sbjct: 15 ILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTIL-EKPPQLVLLDVMMPGIDGYE 73 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P + + + ++ G AGA+ F+ KP + L +R L +++ Sbjct: 74 VTRRIRNNPNLPFIPILLITAHDQ-SSVVEGLDAGADDFIRKPVEIDELLARVRSLLRLK 132 Query: 122 KSKDEN 127 +S DE Sbjct: 133 ESIDEQ 138 >gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall processes YvrG [Bacillus subtilis subsp. subtilis str. 168] gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall processes [YvrG] [Bacillus subtilis subsp. subtilis str. 168] gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] Length = 237 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + + + G+ + +A S EA + + + +V+D M G+ Sbjct: 5 SILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D +++L ++G GA+ ++ KPFN L +R + Sbjct: 64 FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 120 Query: 120 MQKSKDE 126 E Sbjct: 121 RTYQSKE 127 >gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 226 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLL+D + + R G+ + A + E + E E P+ ++ D M + Sbjct: 22 TTLLLIDDDPNLILLVRDYLEFRGYDMLTAANGVEGLQILE-ETTPDLIICDVMMPEMDG 80 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI +VRQ + + V +L + I G GA+ +L+KPF E L + Sbjct: 81 YTFIQNVRQNSQISWIPVIFLSAKGQTCDRIEGLNQGADVYLVKPFEPEELVAQVESSLN 140 Query: 120 MQK 122 + Sbjct: 141 QAR 143 >gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41] gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + VF+ S EA E+E L + ++D M + F Sbjct: 14 NILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGL-DLAILDIMMPEIDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ + V L + + I G GA+ ++ KPF L ++ + Sbjct: 73 T-ILQKIRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRR 129 >gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] Length = 231 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEIDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|150017343|ref|YP_001309597.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903808|gb|ABR34641.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 219 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++L+V+ +R + V EA + EA + +++D + G+ Sbjct: 1 METILVVEDELSIRSFICINLRKKKYEVLEAENGEEALSIF-NNRKIDIVLLDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + V + L E + G GA+ +LLKPF+ L + L + Sbjct: 60 GFEVCQKIRDISQSVGIIMLTARSQEEDRVKGLVEGADDYLLKPFSMVELEARIISLARR 119 >gi|118577252|ref|YP_899492.1| two component, sigma54 specific, Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504757|gb|ABL01239.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 451 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 2/133 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D +R+V + + + V A+S E + + PN ++ D M G+ Sbjct: 1 MKAKILIIDDDTSLRRVLEYNLQEEDYEVHAASSGEEGL-YLFGQFRPNLVITDMKMSGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + V + + + + GA ++ KPFNR+ L+ +++ Q Sbjct: 60 DGLMVLKSIKERSPETLVIIITAFGTVDVAVEAMKTGAYDYITKPFNRDALKLTVKKALQ 119 Query: 120 MQKSKDENQFLDA 132 +EN+ L + Sbjct: 120 FSGLAEENKRLKS 132 >gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] Length = 227 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 7/130 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +LLVD + ++ + ++ G+ V ++ EA + +K P+ +++D M Sbjct: 1 MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHS-PHLIILDVMM 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R + + + +AG AGA+ ++ KP + L + Sbjct: 60 PEMDGIEACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKV 119 Query: 115 RELPQMQKSK 124 + L + K + Sbjct: 120 KALLRRFKEE 129 >gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + L GF EA E+ + P+ +++D + G Sbjct: 1 MTHVLIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFER-VNPDIVLLDLMLPGVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEICKTIRAKSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +K+ + Sbjct: 119 SRKASKK 125 >gi|190894793|ref|YP_001985086.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190700454|gb|ACE94536.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 2100 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD + G V AT+ EA + E +++D M G+ + Sbjct: 1981 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINTEPSVAIVLMDIMMPGMDGY 2040 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + + L + AGA+ +L KP N E L A+R Sbjct: 2041 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2100 Score = 94.5 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 15/139 (10%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ +V L D GF V A +A +E P+ + +D + +L Sbjct: 1714 LLVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALTLA-QEYKPSAISLDIFLPDMLGWT 1772 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 ++ ++Q P + V + E G GA +F+ KP E L ++ Sbjct: 1773 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAYA 1829 Query: 119 QMQKSK------DENQFLD 131 + ++ + DE + L Sbjct: 1830 EPRRKQLLLVEDDEAERLS 1848 Score = 72.1 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLV+ R L + S EA + + +V+D S+ + Sbjct: 1834 KQLLLVEDDEAERLSVTALLGHDDIDITSVGSGSEALAALRRNSA-DCVVLDLSLPDMSG 1892 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 F + +R +V V + A + A S ++K + E L Sbjct: 1893 FEVLEQIRDDVEIGEVPVVVFTGRELSAEEDATLHSMARSVVVKGVESPERLLD 1946 >gi|126658584|ref|ZP_01729731.1| response regulator receiver domain protein (CheY-like) [Cyanothece sp. CCY0110] gi|126620171|gb|EAZ90893.1| response regulator receiver domain protein (CheY-like) [Cyanothece sp. CCY0110] Length = 335 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD ++ + + G+ A S +A E E P+ +++D M + +E Sbjct: 14 ILIVDDIPKNLQLLIEILDTSGYGTTFAVSGEQALERVEVTD-PDLILLDLMMPKMNGIE 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + + +L + +I+ AGA ++ KPF L ++ ++ Sbjct: 73 VCKRLKNNPKTEQIPIIFLTAATETNYLISAFEAGAVDYVTKPFKTPELLARIKTHLDLK 132 Query: 122 KSKDEN 127 ++KDE Sbjct: 133 RTKDEL 138 >gi|86360995|ref|YP_472882.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86285097|gb|ABC94155.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 2099 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD + G V AT+ EA + E +++D M G+ + Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINTEPSVAIVLMDIMMPGMDGY 2039 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + + L + AGA+ +L KP N E L A+R Sbjct: 2040 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 9/126 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ +V L D GF V A +A +E P+ + +D + +L Sbjct: 1713 LLVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALTLA-QEYKPSAISLDIFLPDMLGWT 1771 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 ++ ++Q P + V + E G GA +F+ KP E L ++ Sbjct: 1772 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGRALSRLKAYA 1828 Query: 119 QMQKSK 124 + ++ + Sbjct: 1829 EPRRKQ 1834 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLV+ + R L + S EA + + +V+D ++ + Sbjct: 1833 KQLLLVEDNEAERMSVTALLGHDDIDITSVGSGSEALAVLRQGSA-DCVVLDLTLPDMSG 1891 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 F + +R +V V + A + A S ++K + E L Sbjct: 1892 FEVLEQIRDDAEIAEVPVVVFTGRELSPEEDATLHSMARSVVVKGVESPERLLD 1945 >gi|148262577|ref|YP_001229283.1| two component, sigma-54 specific, Fis family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396077|gb|ABQ24710.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 456 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD H++R G+ VF A + +A +E P+ +++D + G+ Sbjct: 4 TKILVVDDEHLIRWSLEQNLKKQGYEVFTAGNGEDALRLV-REEQPDLVLLDIQLPGIGG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + D+ V L E + R GA ++ KPFN + L +++ + Sbjct: 63 LEVLEKVKEFDEDIVVIMLTAHGGLETAVNTMRMGAYDYINKPFNLDELSIVIKKALETS 122 Query: 122 KSKDENQFLDA 132 + E L + Sbjct: 123 DLRREVVQLRS 133 >gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071] gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V A + + + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDE 126 +E Sbjct: 118 EPEE 121 >gi|325106499|ref|YP_004276153.1| histidine kinase [Pedobacter saltans DSM 12145] gi|324975347|gb|ADY54331.1| histidine kinase [Pedobacter saltans DSM 12145] Length = 1366 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 4/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + +R + ++V EA E + KE +P+ +V D +M + Sbjct: 1110 MHTVLVVEDNDELRTFLAQSLSGE-YLVLEARDGVEGLDLALKE-VPDIIVSDVTMPNMD 1167 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + V++ + + + V L + G +GAN +L KPF+ + L +R L Sbjct: 1168 GMEFCSLVKKNEVSSHIPVIMLTAMASHLHQVEGLESGANIYLTKPFSVQLLELHIRNLI 1227 Query: 119 QMQKSKDE 126 + E Sbjct: 1228 NSANALKE 1235 >gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551] gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 11/136 (8%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L+VD + + +F D G+ V +A + +A + + + +++D M + Sbjct: 1 MQESILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLKTN--VDLIILDVMMPQM 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R+ + +L + + G G + ++ KPF + L + Sbjct: 59 DGFDLCKVIREQ---IYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAH 115 Query: 118 PQMQ---KSKDENQFL 130 + + + +NQ L Sbjct: 116 LRREQRDRVSTQNQRL 131 >gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + GF V E + ++D + G+ Sbjct: 1 MSRILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAED-FDLFILDLMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIREK---KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHL 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|240144544|ref|ZP_04743145.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257203433|gb|EEV01718.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 235 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R + V++A E E E + ++D M + Sbjct: 5 NILIVEDDKEIRDGIEIFLKSQNYNVYKAADGVEGLEIIES-KEIHLAIVDIMMPRMDGV 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D V L + + + G GA+ ++ KPF L + + Sbjct: 64 TMTLKLRE-HHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRR 120 >gi|254507357|ref|ZP_05119493.1| osmolarity response regulator [Vibrio parahaemolyticus 16] gi|219549817|gb|EED26806.1| osmolarity response regulator [Vibrio parahaemolyticus 16] Length = 239 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c] gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 257 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 1/108 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ G+ V A A E +E P+ V+D M + Sbjct: 12 RVLVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRE-RPDIAVLDVMMPRMDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 A + G D+ V L ++G GA+ +L+KPF E L Sbjct: 71 EACRQLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 118 >gi|302036583|ref|YP_003796905.1| sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] gi|300604647|emb|CBK40979.1| Sigma-54 dependent DNA-binding response regulator [Candidatus Nitrospira defluvii] Length = 466 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + D G+ V A S EA + C P +++D M + Sbjct: 4 SILIVDDEVSILNSLSSILEDEGYEVSVAKSGIEALKLCAVSP-PELMMLDIWMPDMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R L V + E + + GA ++ KP + E + ++ + Sbjct: 63 ETLRRLRELVPQTQVMMMSGHGSIETAVKAIKLGAYDYIEKPLSLENVTLRVKHALDQHR 122 Query: 123 SKDENQFL 130 + EN+ L Sbjct: 123 LEQENRTL 130 >gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1] gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1] Length = 233 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD +R + + GF V EA E + +K + + +V+D M V Sbjct: 5 TILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKV-HLIVLDLMMPKVDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR++ + + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 KMCMKVREVAE---MPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRR 120 >gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1134 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + D V A + EA + + +++D M + Sbjct: 1014 KKVLIVDDDMRNIFALATVLEDKNMEVVSADNGHEALKLLAENSDIALVLMDIMMPEMDG 1073 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +RQ P + + L + AGAN +L KP + + L MR Sbjct: 1074 YETMRQIRQSPNFRKLPIIALTAKAMKGDKAKCIEAGANDYLSKPVDTDKLISLMRVWLY 1133 Query: 120 M 120 Sbjct: 1134 R 1134 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 6/118 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + + GF A E E PN +++D + + Sbjct: 746 KSLLIIEDDRRFSHLLLESARETGFKCLLAEEGRMGLELAETHK-PNAIILDIGLPSIDG 804 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + H++ P + V+++ + + GA +L+KP + E L +++ Sbjct: 805 WTVMEHLKDHPDTRHIPVHFISAFDQ---RLEAKKMGAIGYLIKPVSLEQLDETFQKI 859 Score = 34.0 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 4/87 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVL 60 +LL++ S + ++ L + + A + A + +K ++ +D + + Sbjct: 868 KNLLVIADSEVHQQKILALLDTKEVNITLAVTRANALQHLKKIAFDCIILDMDIEQQSGI 927 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFE 87 + + ++Q V + D E Sbjct: 928 KLLEQMQQESGLCQVPLI---TYADRE 951 >gi|17989136|ref|NP_541769.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23500221|ref|NP_699661.1| transcriptional regulatory protein OmpR [Brucella suis 1330] gi|62317658|ref|YP_223511.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1 str. 9-941] gi|83269641|ref|YP_418932.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|163844637|ref|YP_001622292.1| hypothetical protein BSUIS_B0474 [Brucella suis ATCC 23445] gi|189022907|ref|YP_001932648.1| Response regulator receiver [Brucella abortus S19] gi|225686276|ref|YP_002734248.1| putative transcriptional regulator ycf27 [Brucella melitensis ATCC 23457] gi|237817205|ref|ZP_04596197.1| Probable transcriptional regulator ycf27 [Brucella abortus str. 2308 A] gi|254691154|ref|ZP_05154408.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 6 str. 870] gi|254698937|ref|ZP_05160765.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 2 str. 86/8/59] gi|254699728|ref|ZP_05161556.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 5 str. 513] gi|254702863|ref|ZP_05164691.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 3 str. 686] gi|254706012|ref|ZP_05167840.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis M163/99/10] gi|254711685|ref|ZP_05173496.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis B2/94] gi|254732384|ref|ZP_05190962.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 4 str. 292] gi|256029680|ref|ZP_05443294.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis M292/94/1] gi|256043373|ref|ZP_05446306.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 1 str. Rev.1] gi|256111617|ref|ZP_05452612.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 3 str. Ether] gi|256157833|ref|ZP_05455751.1| Probable transcriptional regulator ycf27 [Brucella ceti M490/95/1] gi|256253205|ref|ZP_05458741.1| Probable transcriptional regulator ycf27 [Brucella ceti B1/94] gi|256256340|ref|ZP_05461876.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 9 str. C68] gi|256262586|ref|ZP_05465118.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|260544890|ref|ZP_05820711.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260564579|ref|ZP_05835064.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260756755|ref|ZP_05869103.1| two-component system response regulator [Brucella abortus bv. 6 str. 870] gi|260760185|ref|ZP_05872533.1| two-component system response regulator [Brucella abortus bv. 4 str. 292] gi|260763423|ref|ZP_05875755.1| two-component system response regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882570|ref|ZP_05894184.1| two-component system response regulator [Brucella abortus bv. 9 str. C68] gi|261220313|ref|ZP_05934594.1| two-component system response regulator [Brucella ceti B1/94] gi|261313453|ref|ZP_05952650.1| two-component system response regulator [Brucella pinnipedialis M163/99/10] gi|261319310|ref|ZP_05958507.1| two-component system response regulator [Brucella pinnipedialis B2/94] gi|261750193|ref|ZP_05993902.1| two-component system response regulator [Brucella suis bv. 5 str. 513] gi|261753466|ref|ZP_05997175.1| two-component system response regulator [Brucella suis bv. 3 str. 686] gi|265986690|ref|ZP_06099247.1| two-component system response regulator [Brucella pinnipedialis M292/94/1] gi|265989794|ref|ZP_06102351.1| two-component system response regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993097|ref|ZP_06105654.1| two-component system response regulator [Brucella melitensis bv. 3 str. Ether] gi|265996340|ref|ZP_06108897.1| two-component system response regulator [Brucella ceti M490/95/1] gi|294853717|ref|ZP_06794389.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026] gi|297249702|ref|ZP_06933403.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Brucella abortus bv. 5 str. B3196] gi|17984986|gb|AAL54033.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23463825|gb|AAN33666.1| transcriptional regulatory protein OmpR, putative [Brucella suis 1330] gi|62197851|gb|AAX76150.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1 str. 9-941] gi|82939915|emb|CAJ12928.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|163675360|gb|ABY39470.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189021481|gb|ACD74202.1| Response regulator receiver [Brucella abortus S19] gi|225642381|gb|ACO02294.1| Probable transcriptional regulator ycf27 [Brucella melitensis ATCC 23457] gi|237788018|gb|EEP62234.1| Probable transcriptional regulator ycf27 [Brucella abortus str. 2308 A] gi|260098161|gb|EEW82035.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260152222|gb|EEW87315.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260670503|gb|EEX57443.1| two-component system response regulator [Brucella abortus bv. 4 str. 292] gi|260673844|gb|EEX60665.1| two-component system response regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676863|gb|EEX63684.1| two-component system response regulator [Brucella abortus bv. 6 str. 870] gi|260872098|gb|EEX79167.1| two-component system response regulator [Brucella abortus bv. 9 str. C68] gi|260918897|gb|EEX85550.1| two-component system response regulator [Brucella ceti B1/94] gi|261298533|gb|EEY02030.1| two-component system response regulator [Brucella pinnipedialis B2/94] gi|261302479|gb|EEY05976.1| two-component system response regulator [Brucella pinnipedialis M163/99/10] gi|261739946|gb|EEY27872.1| two-component system response regulator [Brucella suis bv. 5 str. 513] gi|261743219|gb|EEY31145.1| two-component system response regulator [Brucella suis bv. 3 str. 686] gi|262550637|gb|EEZ06798.1| two-component system response regulator [Brucella ceti M490/95/1] gi|262763967|gb|EEZ09999.1| two-component system response regulator [Brucella melitensis bv. 3 str. Ether] gi|263000463|gb|EEZ13153.1| two-component system response regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092372|gb|EEZ16625.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|264658887|gb|EEZ29148.1| two-component system response regulator [Brucella pinnipedialis M292/94/1] gi|294819372|gb|EFG36372.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026] gi|297173571|gb|EFH32935.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Brucella abortus bv. 5 str. B3196] gi|326410637|gb|ADZ67701.1| Response regulator receiver [Brucella melitensis M28] gi|326553929|gb|ADZ88568.1| Response regulator receiver [Brucella melitensis M5-90] Length = 238 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R + G V A + E + + + +++D + Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G +E VR + V + L D I G GA+ ++ KPF+ L +R Sbjct: 60 GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116 Query: 116 ELPQM-QKSKDENQFLDAI 133 + + + ++ + L I Sbjct: 117 AVLRRFEGNRSPQRALTQI 135 >gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V + G+ A++ +A E+E + +++D + + Sbjct: 4 RILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENW-DLVLLDIMIPQLSGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-Q 121 R + L + ++G GAN ++ KPF E L +R + Sbjct: 63 EVLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVV 122 Query: 122 KSKDENQFLD 131 ++ ++NQ L Sbjct: 123 QAANDNQTLS 132 >gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039] gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162] gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071] gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636] gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679] gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317] gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071] gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636] gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679] gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317] gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039] gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162] gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] Length = 229 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + ++ ++ G+ +A EA L++D M + Sbjct: 2 KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDGM 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+++ + + + L + I G AGA+ ++ KPFN + ++ L + K Sbjct: 62 -QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 120 Query: 123 SK 124 + Sbjct: 121 MQ 122 >gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + GF + A E + + P+ +++D + G L Sbjct: 4 RILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAF-RSVRPDLILLDLMLPGKDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + L + D ++ G +GA+ ++ KPF + L +R +M Sbjct: 63 EVCREIREESG---VPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRM 119 Query: 121 QK 122 + Sbjct: 120 SE 121 >gi|260769733|ref|ZP_05878666.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972] gi|260615071|gb|EEX40257.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972] gi|315182272|gb|ADT89185.1| chemotaxis protein CheY [Vibrio furnissii NCTC 11218] Length = 119 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A EA + + ++ D +M + Sbjct: 1 MTKILAVDDSISIRQMVSHTLKDAGYDVETANDGREALTKAQSTK-FDVVISDVNMPNMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R P + + L E EK G AGA +L+KPFN +TL ++ + Sbjct: 60 GFELVKAIRGNPQYKFIPILMLTTETSMEKKQEGKLAGATGWLVKPFNPDTLLKTLKRVL 119 >gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ + F+ G+ V +A + E + + + +++D M + + Sbjct: 7 NILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKA-KSFSLILLDVMMPKMDGY 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +++ V L + I G G + +++KPF+ L + + + K Sbjct: 66 TMLCKLRES-SNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTK 124 Query: 123 S 123 S Sbjct: 125 S 125 >gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] Length = 223 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + R G+ V A EA + ++E PN L++D + Sbjct: 1 MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWDEE--PNVLILDVMLPDTD 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R D+ V L + + G + GA+ ++ KPFN L ++ + Sbjct: 58 GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1356 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 2/122 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + G V A E+ + + +++D M + Sbjct: 1235 RTVLVVDDDMRNIFALTSVLEEKGMQVVVARDGSESLTRLRENPEIDLVLMDIMMPVMDG 1294 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ P D+ + L + A AGAN +L KP + + L +R Sbjct: 1295 YEAMREIRKDPKLKDLPIIALTAKAMKGDKNACIEAGANDYLAKPVDMDKLLSLLRVWLY 1354 Query: 120 MQ 121 + Sbjct: 1355 RK 1356 Score = 90.6 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 12/133 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ ++ R + GF A F + P+ +++D + G+ Sbjct: 967 KSLLIIEDDQHFARILRDQAREMGFKALLAADGETGLHFADFHG-PSAIILDNILPGMNG 1025 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ P + + ++ E + R GA +FL KP ETL R L + Sbjct: 1026 WTVMERLKNDPKTRHIPLSFISAEDRS---LEAMRMGALAFLTKPVELETL----RTLLE 1078 Query: 120 MQKS--KDENQFL 130 S K + L Sbjct: 1079 RIDSFIKKPMRRL 1091 Score = 81.4 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 11/134 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD + R+ R L + A S EA + + + +++D + + Sbjct: 1088 MRRLLVVDDDALQRESIRALIGNGDVETVTAASGAEALGLLKSQN-FDCMILDLGLNDMS 1146 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF----- 112 F + +R P + + V E+ A S ++K + E L Sbjct: 1147 GFDVLRTLRSGPTPSTLPVVVYTGRDLSEEEERRLSRYAESIIVKGARSPERLLEETTLF 1206 Query: 113 --AMRELPQMQKSK 124 ++ +K + Sbjct: 1207 LHRVQANLPQEKQR 1220 >gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + ++ + V EA ++ + +++D M + Sbjct: 2 RILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPY-DAVILDIMMPKLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V L + E + G AGAN +L+KPF E L +R L + Sbjct: 61 SVLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTA 120 Query: 123 SKDE 126 + + Sbjct: 121 AVQK 124 >gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814] gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814] Length = 235 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + ++ G+ +A + + +++D + G Sbjct: 1 MSRILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHY-DLILLDLMLPGCS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R D+ + + + +I G GA+ ++ KPF+ L +R Sbjct: 60 GYDICRKIR---DEIDIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHL 116 Query: 119 QMQK 122 + + Sbjct: 117 KRYE 120 >gi|323497026|ref|ZP_08102049.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326] gi|323317870|gb|EGA70858.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326] Length = 239 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396] gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V A + E E E + +++D + + Sbjct: 3 KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ + ++ + ++AG GA+ +++KPF E L +R + Q Sbjct: 62 FEVT-RRLQQEKNTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQ 120 Query: 122 KSKD 125 + Sbjct: 121 DIEA 124 >gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 251 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM---EGV 59 ++L+VD +R++ F G V A E E + +++D ++ Sbjct: 24 TILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSES-FDVVLLDVALGSGPNG 82 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R V + L + G AGA+ ++ KPF LR +R + + Sbjct: 83 YEVCRTLRARRNV--VPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLR 140 Query: 120 MQKSK 124 + Sbjct: 141 RAGPR 145 >gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +K+ + Sbjct: 119 SRKASKK 125 >gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + + L G+ V +A +A E ++ + + +++D M + Sbjct: 5 ILVVDDDREIVRAIAILLEKEGYQVLKAYDGMQALELIAEQKV-HLVIMDVMMPKLDGLS 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + + G GA+ ++ KP+N + L ++ + Sbjct: 64 AVLKIRER-KNIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRR 119 >gi|119471397|ref|ZP_01613869.1| osmolarity response regulator [Alteromonadales bacterium TW-7] gi|119445673|gb|EAW26957.1| osmolarity response regulator [Alteromonadales bacterium TW-7] Length = 239 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + GF+V A + + + + + +V+D + G Sbjct: 6 TKVLVVDDDMRLRSLLERYLVEQGFIVRTAANSEQ-MDRLLERENFHLMVLDLMLPGEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++ + L + D I G GA+ ++ KPFN L ++ + + Sbjct: 65 LSICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILR 122 Query: 120 MQKSK 124 + + Sbjct: 123 RRAKE 127 >gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K G+ V + + + +++D + + Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNY-DVILLDLMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + + ++G GA+ +L+KPF E L +R L + Sbjct: 60 GLEVA-RRLRETKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118 Query: 121 QKSKDE 126 + E Sbjct: 119 IAIETE 124 >gi|315607847|ref|ZP_07882840.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] gi|315250316|gb|EFU30312.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] Length = 869 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 SLL++D + +R L + V +A E ++ +P+ ++ D M + Sbjct: 625 SLLVIDDNPDIRSYVMTLL-GNDYNVEQAADGREGLHKAMRD-VPDLIICDVMMPVMDGL 682 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F V+ + + + V L E+ + G GA+++L KPF+ E L+ +R L Sbjct: 683 EFCRRVKHDVITSHIPVLLLTARTLEEQRVEGYDYGADAYLTKPFSGEVLKSRVRNLLDN 742 Query: 121 QKSKD 125 +K Sbjct: 743 RKLMK 747 >gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564] gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +++ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKP-IDLIITDIMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + D ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETEVVS 131 >gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + K+ + GF A S EA E E +++++D M G+ Sbjct: 3 KKILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALE-ENHIDFIILDIMMPGMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + L I G GA+ ++ KPF+ + L +R + Sbjct: 62 LDVCRSIRKS---YNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFR 118 Query: 120 M 120 Sbjct: 119 K 119 >gi|300022157|ref|YP_003754768.1| response regulator receiver modulated diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888] gi|299523978|gb|ADJ22447.1| response regulator receiver modulated diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888] Length = 456 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A S +A + E+E + + +++D M G+ F Sbjct: 4 RVLVVDDILANVKLLEARLQAEYFEVLTANSGRQALDLLERESV-DVVLLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ + V + + G +GA+ FL KP + L ++ L ++ Sbjct: 63 ETCRHIKASHATHHIPVVMVTALDQPSDKVQGLESGADDFLTKPVDDIALVTRVKNLARL 122 Query: 121 QKSKDENQFLDA 132 + DE + Sbjct: 123 KMLNDEMMMRAS 134 Score = 81.4 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLVD + + G F + A + +V + L Sbjct: 157 RVLLVDDNERSAARLLEFLSK-GNDAFAERDMHAALTKLTESNFDLLVVSLSLDAADGLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + VR + + + L+ D +++ G G N +L++P +R L ++ + + Sbjct: 216 LCSQVRSLERTRHLPIIMLVEPGDEARLLRGLDMGVNDYLMRPIDRHELLARVKTQIKRK 275 Query: 122 KSKD 125 + D Sbjct: 276 RHSD 279 >gi|239947824|ref|ZP_04699577.1| regulatory component of sensory transduction system [Rickettsia endosymbiont of Ixodes scapularis] gi|239922100|gb|EER22124.1| regulatory component of sensory transduction system [Rickettsia endosymbiont of Ixodes scapularis] Length = 450 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GFEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQF 129 +M+ +E + Sbjct: 120 RMKSLINELKL 130 Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 47/130 (36%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P+ ++I +E + Sbjct: 152 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDII-NEYTPDLVIISSMLEN-DD 208 Query: 62 FIAHVRQMPLGTDVF-VYYLLMEVDFEK--MIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + ++ V + + ++ G G N + + P L +R Sbjct: 209 PLRISVILRGKAEISGVVIISQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268 Query: 119 QMQKSKDENQ 128 + ++ +D + Sbjct: 269 RRKQYQDNLR 278 >gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 222 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 MD +L+V+ +R++ R G A EA E E++ + +V+D M Sbjct: 1 MDRILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDY-DAVVLDVLMPRLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR+ V + +L E+ + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFGVCRAVRRQSS---VPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALI 116 Query: 119 QMQKSKDE 126 + + + + Sbjct: 117 RRSRGERK 124 >gi|308175054|ref|YP_003921759.1| transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens DSM 7] gi|307607918|emb|CBI44289.1| Transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens DSM 7] gi|328555023|gb|AEB25515.1| Transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens TA208] gi|328913378|gb|AEB64974.1| Transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens LL3] Length = 239 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + + + G+ + A S EA EF + E + LV+D MEG+ Sbjct: 5 SILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETA-DLLVLDVMMEGMSG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R TD +++L ++G GA+ ++ KPFN L +R + Sbjct: 64 FEACTEIRN---YTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLK 120 Query: 120 MQKSKDE 126 ++E Sbjct: 121 RTYKREE 127 >gi|297162453|gb|ADI12165.1| Signal transduction histidine kinase-like protein [Streptomyces bingchenggensis BCW-1] Length = 1154 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+ D + VR + L V A + + + ++ D M + F Sbjct: 649 LLVADDNADVRDYLKELLGP-DHEVLLVGDGRAALDTALSHPV-DLVLTDVMMPRLDGFA 706 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P T + + L E + G RAGA+ +L KPF+ L +R ++ Sbjct: 707 LVRALRADPRTTRLPIILLTARAGEEATVQGLRAGADDYLAKPFSARQLLARVRANLELS 766 Query: 122 KSKDE 126 + +++ Sbjct: 767 RLREQ 771 >gi|260170267|ref|ZP_05756679.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] gi|315918629|ref|ZP_07914869.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692504|gb|EFS29339.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1329 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA KE P ++ D M + Sbjct: 1063 QRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEFWPELVLSDIMMPEMGG 1120 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L D ++ G GA+ +L+KPF+ + LR + L Sbjct: 1121 DELCVAIKSDIETSHIPVLLLTALGDENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180 Query: 120 MQKSKD 125 ++ Sbjct: 1181 NRELLR 1186 >gi|227546759|ref|ZP_03976808.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212721|gb|EEI80602.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 240 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ +VD + ++ + + GF A E + P+ +++D + G+ Sbjct: 1 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + L + D ++AG AGA+ ++ KPF L + Sbjct: 60 GTGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARF 116 Query: 119 QMQKSKDEN 127 ++ K E+ Sbjct: 117 RIAKPAAED 125 >gi|218551104|ref|YP_002384895.1| DNA-binding transcriptional regulator CpxR [Escherichia fergusonii ATCC 35469] gi|218358645|emb|CAQ91295.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia fergusonii ATCC 35469] gi|324111467|gb|EGC05448.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|325499383|gb|EGC97242.1| DNA-binding transcriptional regulator CpxR [Escherichia fergusonii ECD227] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A E + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes] Length = 233 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+VD + + + GF V A E E P+ +V+D + + Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 + +V + L + + I G GA+ ++ KPF+ + ++ + + + K Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 125 DE 126 E Sbjct: 121 AE 122 >gi|153206919|ref|ZP_01945737.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat Q177'] gi|212219514|ref|YP_002306301.1| two-component response regulator [Coxiella burnetii CbuK_Q154] gi|120576992|gb|EAX33616.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat Q177'] gi|212013776|gb|ACJ21156.1| two-component response regulator [Coxiella burnetii CbuK_Q154] Length = 245 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + GF A E + K+ + + +++D M G Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAV-DLVILDIMMPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQM + + + L + I G GA+ +L KPFN L +R + + + Sbjct: 66 LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123 >gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD ++++ + G+ V A EA E E P +V+D + G Sbjct: 1 MAVILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILE-EKQPELVVLDIMLPGIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109 LE + +R+ P ++ V L + + + G GA+ ++ KPF+ Sbjct: 60 GLEVLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 110 >gi|88859132|ref|ZP_01133773.1| putative two-component response regulator [Pseudoalteromonas tunicata D2] gi|88819358|gb|EAR29172.1| putative two-component response regulator [Pseudoalteromonas tunicata D2] Length = 312 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + V + + + V A++ EA + + +++D M + Sbjct: 19 ILVVDDDPLNLVVLKQTLQKY-YRVLSASNGQEALDVVSSNT-IDLILLDIKMPKMDGYQ 76 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ P + V ++ G GA ++ KPF+ + ++ ++ Sbjct: 77 VLKKLKNSPQTQSIPVIFISANDSHADEAKGLEMGAMDYITKPFSPPIVLVRVKNQLTIK 136 Query: 122 KSKDENQFLDAI 133 + D + L +I Sbjct: 137 QKNDLLEKLVSI 148 >gi|15900027|ref|NP_344631.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111656923|ref|ZP_01407745.1| hypothetical protein SpneT_02001832 [Streptococcus pneumoniae TIGR4] gi|116516719|ref|YP_815548.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985429|ref|ZP_01818634.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148987813|ref|ZP_01819276.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993923|ref|ZP_01823306.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148996490|ref|ZP_01824208.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149001833|ref|ZP_01826806.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007940|ref|ZP_01831518.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149017756|ref|ZP_01834215.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486666|ref|ZP_02711174.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|168489445|ref|ZP_02713644.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|168492607|ref|ZP_02716750.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|168493781|ref|ZP_02717924.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|168577082|ref|ZP_02722911.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|169834091|ref|YP_001693605.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182683051|ref|YP_001834798.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|194397353|ref|YP_002036799.1| response regulator [Streptococcus pneumoniae G54] gi|221231023|ref|YP_002510175.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225855866|ref|YP_002737377.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225860118|ref|YP_002741627.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|237649600|ref|ZP_04523852.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974] gi|237821536|ref|ZP_04597381.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974M2] gi|298230008|ref|ZP_06963689.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254523|ref|ZP_06978109.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501871|ref|YP_003723811.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254821|ref|ZP_07340921.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303259126|ref|ZP_07345104.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303260883|ref|ZP_07346832.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303263210|ref|ZP_07349133.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|303267317|ref|ZP_07353178.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269588|ref|ZP_07355349.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307066757|ref|YP_003875723.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126308|ref|YP_003878339.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|5830538|emb|CAB54578.1| response regulator [Streptococcus pneumoniae] gi|14971549|gb|AAK74271.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116077295|gb|ABJ55015.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147757065|gb|EDK64104.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147760291|gb|EDK67280.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147760563|gb|EDK67538.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147922387|gb|EDK73507.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147926277|gb|EDK77350.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927630|gb|EDK78656.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931320|gb|EDK82298.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168996593|gb|ACA37205.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182628385|gb|ACB89333.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|183570301|gb|EDT90829.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|183572088|gb|EDT92616.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|183573247|gb|EDT93775.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|183576175|gb|EDT96703.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|183577322|gb|EDT97850.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|194357020|gb|ACF55468.1| response regulator TCS08 [Streptococcus pneumoniae G54] gi|220673483|emb|CAR67954.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225725157|gb|ACO21009.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225727262|gb|ACO23113.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|298237466|gb|ADI68597.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793386|emb|CBW35751.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301799255|emb|CBW31775.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801044|emb|CBW33711.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598258|gb|EFL65304.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637720|gb|EFL68206.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639544|gb|EFL70001.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640862|gb|EFL71248.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643168|gb|EFL73454.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|302646983|gb|EFL77207.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|306408294|gb|ADM83721.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483370|gb|ADM90239.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|327390491|gb|EGE88831.1| response regulator [Streptococcus pneumoniae GA04375] gi|332075745|gb|EGI86212.1| response regulator [Streptococcus pneumoniae GA17570] gi|332076537|gb|EGI86999.1| response regulator [Streptococcus pneumoniae GA17545] gi|332077390|gb|EGI87851.1| response regulator [Streptococcus pneumoniae GA41301] gi|332202007|gb|EGJ16076.1| response regulator [Streptococcus pneumoniae GA41317] gi|332204102|gb|EGJ18167.1| response regulator [Streptococcus pneumoniae GA47901] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +K+ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L + ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETELIS 131 >gi|294679014|ref|YP_003579629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacter capsulatus SB 1003] gi|294477834|gb|ADE87222.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacter capsulatus SB 1003] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ R+V ++ GF V A + EA +E P+ +V+D + +E Sbjct: 9 VLVVEDESAQREVLQYNLEAEGFRVVMAVNGDEAL-LFLREEKPDLVVLDWMLPNVSGIE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 V+ P + + L + + G GA+ +++KP++ L Sbjct: 68 ICRRVKANPETRSIPIIMLSARSEESDRVRGLETGADDYVVKPYSVVELMA 118 >gi|262196327|ref|YP_003267536.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079674|gb|ACY15643.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 1406 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LL D + +R L ++ F V A E P ++ D M Sbjct: 634 RVLLADDNADMRAYVGRLLSER-FAVEAVPDGRSALEAVRARP-PELVLADVMMPQLSGF 691 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +A +R P D V L E + G AGA+ +L KPF+ L + QM Sbjct: 692 ELLAAIRDDPAIRDTPVILLSARAGEEARVEGMDAGADDYLTKPFSARELLARVSAHVQM 751 Query: 121 QKSKDE 126 + + E Sbjct: 752 SRMRQE 757 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + L + G V A +A E E P +++D + Sbjct: 1289 RILVVDDNRDAADTLETLLSYSGHSVKVAFDGLQAVEVAEA-FRPEVILLDIGLPRIDGY 1347 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 E +R P D + L E A AG + L+KP + TL A+ Sbjct: 1348 EACRRIRAQPWARDATLVALTGWGQREDRRKSAEAGFDRHLVKPISSATLLEAI 1401 >gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550] gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|117619500|ref|YP_858484.1| transcriptional regulatory protein ZraR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560907|gb|ABK37855.1| transcriptional regulatory protein ZraR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 426 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + K+ G+ V A S A + ++ + ++ D M G+ Sbjct: 1 MSRILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA-DLVLSDLRMAGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V + I R+G SFL KP +++ L + + Sbjct: 60 GLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSL 119 Query: 121 QKSKDEN 127 + K Sbjct: 120 TRPKQRQ 126 >gi|315606884|ref|ZP_07881892.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315251421|gb|EFU31402.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1313 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 L++V+ + +R RH+F + V + A E+ + + + + +V D M G Sbjct: 1050 RLMVVEDNDDLRFYLRHIFEQE-YEVVDKPDGDAALEYLKSQTV-DLIVSDIMMPGIQGD 1107 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++Q + + V L + + M+ G GA+ F+ KPF+ + L+ +R + Sbjct: 1108 EMCRLIKQNVETSHIPVILLTAKAGRDHMLKGLEGGADDFIAKPFDADVLKAKVRTMIHN 1167 Query: 121 QKSKDE 126 + E Sbjct: 1168 RNRLRE 1173 >gi|283783078|ref|YP_003373832.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|298253498|ref|ZP_06977288.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] gi|283442136|gb|ADB14602.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|297532265|gb|EFH71153.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] Length = 250 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ AT A E +L P+ +++D + + Sbjct: 12 RTILVVEDEPDLATAIAQRITAQGWRARVATDGASAVRAAE-QLKPDLIIMDIMLPIMDG 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + V + L I G AGA+ ++ KPF+ L L + Sbjct: 71 IEATRRIISKMP-VPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRV 129 Query: 122 KSKDE 126 + + Sbjct: 130 ERASQ 134 >gi|237726839|ref|ZP_04557320.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435365|gb|EEO45442.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1339 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + +R F D + A + E K +P+ ++ D M +E Sbjct: 1086 ILIVEDNDDIRNYIATSFID-NYRTVTAKNGKEGWSMALK-YIPDIIISDIMMPEKNGIE 1143 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 +++ + V L + G ++GA+S+L KPF+ + L + L + Sbjct: 1144 LCKLIKEDMRTCHIPVILLTAKDSILDKEEGYQSGADSYLTKPFSAKLLSSRINNLLESR 1203 Query: 121 QKSKD 125 QK Sbjct: 1204 QKLAS 1208 >gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 ARYERLSGN 125 >gi|227536214|ref|ZP_03966263.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300772173|ref|ZP_07082043.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227244111|gb|EEI94126.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300760476|gb|EFK57302.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 234 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + + G+ V AT +A + KE N +++D + + Sbjct: 5 QRILLVEDEEHLLEAIKLNLELEGYRVTTATDGKKALKVF-KEERFNLIILDVMIPEIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++V + +L + E I G + GA+ +L+KPFN E L + L + Sbjct: 64 FQVAETIRLQNSEVPIMFLTAKNSSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRRG 123 Query: 122 KSKDENQFLDA 132 D+ + L++ Sbjct: 124 MKGDDLKELNS 134 >gi|94971588|ref|YP_593636.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553638|gb|ABF43562.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 247 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 SLLL+D + ++ G V + + + E + +++D + G+ F Sbjct: 21 SLLLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSA-AETKYDLVILDVMLPGMNGF 79 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V V L I G AGA+ +L KPF+ + L +R + + Sbjct: 80 TLLSQLRRRTP-VPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRAS 138 Query: 123 SKDENQFLD 131 + D Sbjct: 139 QAPADALFD 147 >gi|330957179|gb|EGH57439.1| osmolarity response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 246 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ +V + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R V + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 245 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A + EA + ++ + ++ D M G+ Sbjct: 15 KILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLII-DIMMPGMDGL 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G GA+ ++ KPF + L ++ + Sbjct: 74 SATMKIRES-KNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRR 130 >gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 240 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + R GF V EA + +A KE P+ +++D + G+ + Sbjct: 15 SILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEP-PDAMILDVMLPGMDGY 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +GT+ V +L E + G G + ++ KPF+ E + +R + + Sbjct: 74 TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 123 SKD 125 D Sbjct: 134 KSD 136 >gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] Length = 228 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +++ + + + I G GA+ +++KPFN + +R L + Sbjct: 60 G-IEVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118 Query: 121 QKSK 124 + + Sbjct: 119 SQKE 122 >gi|268317057|ref|YP_003290776.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] gi|262334591|gb|ACY48388.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] Length = 132 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + R L G+ V A E C + + P+ +++D + G+ F Sbjct: 7 RILIVEDEPSIALSLRFLMEQEGYQVHVVEDGEAALEAC-RNVPPDLVLLDVMLPGMSGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P G + V + + G GA+++++KPF + +R L Sbjct: 66 EVCRQLKAGPDGQAIKVVLVTARGRETDLEKGRAVGADAYIVKPFAIREVMETVRTLLNR 125 Query: 121 QKSKDE 126 ++ Sbjct: 126 SGEAEQ 131 >gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11] gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp. D11] gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp. D11] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + F V EA E+ + + +++D + + Sbjct: 1 MK-ILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNY-DLIILDIMLPKMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + V L E I G GA+ +L+KPF+ L +R + + Sbjct: 59 GYEVVKNLRTNKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR 118 Query: 121 QKSKDENQF 129 + N+ Sbjct: 119 KYGNVSNEL 127 >gi|256395913|ref|YP_003117477.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362139|gb|ACU75636.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 233 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R + V A A + LP+ +V+D + + Sbjct: 2 MIKVLVVDDEPQLLRALRINLTARKYEVVTAIDGTSALAIAAR-TLPDLVVLDLGLPDLD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + T+V + L D + AGA+ +L KPF+ E L +R + + Sbjct: 61 G-AEVIKGLRGWTEVPIVVLSGRADASDKVEALDAGADDYLTKPFSMEELLARLR-VARR 118 Query: 121 QKSKD 125 ++ Sbjct: 119 HADRN 123 >gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 509 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + D G+ A EA E E + +++D M + Sbjct: 5 KILIVDDEADIALILKLQLEDAGYETVRARDGVEALEAVAGE-QFDLIMLDIKMPRMDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V + + + + GA ++ KPF+ + + + + + Sbjct: 64 EVLSRL--KGDETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSTDDMLQKVERAIGIDR 121 Query: 123 SKDENQFLD 131 ++ EN L Sbjct: 122 TRKENARLS 130 >gi|59710721|ref|YP_203497.1| osmolarity response regulator [Vibrio fischeri ES114] gi|59478822|gb|AAW84609.1| OmpR DNA-binding osmolarity response regulator in two-component regulatory system with EnvZ [Vibrio fischeri ES114] Length = 239 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQ-MDRLLARETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123 >gi|71737975|ref|YP_272551.1| osmolarity response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257481801|ref|ZP_05635842.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627977|ref|ZP_06460931.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298485217|ref|ZP_07003310.1| Two-component system response regulator OmpR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71558528|gb|AAZ37739.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv. phaseolicola 1448A] gi|298160205|gb|EFI01233.1| Two-component system response regulator OmpR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322224|gb|EFW78320.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320331860|gb|EFW87798.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330866570|gb|EGH01279.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330873006|gb|EGH07155.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890972|gb|EGH23633.1| osmolarity response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330986823|gb|EGH84926.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009435|gb|EGH89491.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 246 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ +V + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R V + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|70733782|ref|YP_257422.1| osmolarity response regulator [Pseudomonas fluorescens Pf-5] gi|68348081|gb|AAY95687.1| DNA-binding response regulator OmpR [Pseudomonas fluorescens Pf-5] Length = 246 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQ-MDRLLGREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 TACRRLRSANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQS 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 268 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A A + ++ P+ +V+D + + Sbjct: 43 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAIQSA-RDFRPDAVVLDMMLPDMDGL 101 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 102 AVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 161 Query: 123 SKDE 126 + D Sbjct: 162 AADR 165 >gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] Length = 240 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 2/124 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ G V A E + +V+D + G Sbjct: 7 ILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGK-AMERALLASGVDLIVLDLMLPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + +D+ + L + I G GA+ +L KPF+ L ++ + + +S Sbjct: 66 LC-RNLRAKSDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRRARS 124 Query: 124 KDEN 127 N Sbjct: 125 LPRN 128 >gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 249 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V G+ V A A L P+ +V+D + Sbjct: 23 RVLVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARA-LRPDAVVLDVMLPDTDGL 81 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + DV V L E IAG AG + ++ KPF+ E + +R L + Sbjct: 82 TVLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAG 141 Query: 123 SKDE 126 + Sbjct: 142 MARQ 145 >gi|294644903|ref|ZP_06722639.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294808798|ref|ZP_06767528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292639716|gb|EFF57998.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294443970|gb|EFG12707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1292 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ + V ++ EA E P ++ D M + Sbjct: 1027 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1084 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1085 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1144 Query: 120 MQKSKD 125 + Sbjct: 1145 NRALLR 1150 >gi|253566417|ref|ZP_04843870.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] gi|265767277|ref|ZP_06094943.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] gi|251944589|gb|EES85064.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] gi|263252582|gb|EEZ24094.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] gi|301165286|emb|CBW24857.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1329 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + R + V A + EA + N +V D M + F Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLD-NHYVNLVVSDVMMPQMDGFE 1142 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L + + + I G GA++++ KPF+ E L + L + Sbjct: 1143 LCKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLIHNR 1202 Query: 122 KSKDE 126 + + Sbjct: 1203 EKLRQ 1207 >gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ +R GF V EAT+ EA + ++ + + ++D + G Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 117 Query: 119 QMQKSKDE 126 + + +E Sbjct: 118 RRIEVHEE 125 >gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 226 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 10/132 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + V +F+D + V +A + +A + + + + +++D M + F Sbjct: 4 TILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKTQ--VDLVILDIMMPKMDGF 61 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ + +L + + G G + ++ KPF + L + + Sbjct: 62 EFCKVVREQ---IKCPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRR 118 Query: 121 QKSKD---ENQF 129 +K + +NQ Sbjct: 119 EKRERVNLQNQR 130 >gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + + + ++D + G+ Sbjct: 4 MSTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTV-DVALLDVMLPGID 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V ++ G GA+ ++ KPF+ L ++ L Sbjct: 63 GFQVCKTIR--EENKKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLL 120 Query: 119 QMQKSKDE 126 + + E Sbjct: 121 RRIEVHKE 128 >gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei] Length = 223 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + + GF V A + + + +++D + + F Sbjct: 5 ILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQP-FDAIILDVMLPKLNGF- 62 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 ++ + + V L D I G GA+ +L KP N L +R + + + Sbjct: 63 EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122 Query: 124 KDENQ 128 + Sbjct: 123 IPAQR 127 >gi|60683701|ref|YP_213845.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60495135|emb|CAH09956.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1329 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + R + V A + EA + N +V D M + F Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLD-NHYVNLVVSDVMMPQMDGFE 1142 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L + + + I G GA++++ KPF+ E L + L + Sbjct: 1143 LCKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLIHNR 1202 Query: 122 KSKDE 126 + + Sbjct: 1203 EKLRQ 1207 >gi|53715770|ref|YP_101762.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|52218635|dbj|BAD51228.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] Length = 1329 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + R + V A + EA + N +V D M + F Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLD-NHYVNLVVSDVMMPQMDGFE 1142 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L + + + I G GA++++ KPF+ E L + L + Sbjct: 1143 LCKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLIHNR 1202 Query: 122 KSKDE 126 + + Sbjct: 1203 EKLRQ 1207 >gi|93007040|ref|YP_581477.1| two component transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394718|gb|ABE75993.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 234 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---VL 60 +L+V+ +R++ GF +A V EA + P +++D + G + Sbjct: 6 ILIVEDEDAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDH-RPALILLDWMLPGDKSGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F ++ L ++ V L + + + + G AGA+ ++ KPF+ L ++ + + Sbjct: 65 DFCRMLKSDTLLAEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRR 124 Query: 121 QKSKD 125 + Sbjct: 125 SNALS 129 >gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 656 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLV+ + KV + V AT E E + +++D + + Sbjct: 2 RILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKY-DLILLDWMLPKLTGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + L + + AGA+ +L+KP + L +R + + Sbjct: 61 DLCKQLRN--ARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRR 118 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+VD + R + +GF + + E E + P+ L++D M + Sbjct: 524 KLLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIE-QCTPDLLILDVQMPEFSGI 582 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR P ++ V +L D E + AGA+ ++ KP L + + Sbjct: 583 DLCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLNRIER 642 Query: 121 QKSK 124 + + Sbjct: 643 SQLR 646 Score = 71.0 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 7/125 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---- 58 LL+VD + + + V A + +AR+ + P+ +++D Sbjct: 399 RLLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARN-RPDVVLLDLCFPDSAGN 457 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +A ++ V V ++ F + + AR G FL KP + + A+ + Sbjct: 458 GLELLAELKTTQPPVPVVVLT--VKESFAERVRVARLGGRGFLRKPVAPQKVMDAIAKAL 515 Query: 119 QMQKS 123 Q S Sbjct: 516 QQSGS 520 >gi|313204586|ref|YP_004043243.1| two component transcriptional regulator, arac family [Paludibacter propionicigenes WB4] gi|312443902|gb|ADQ80258.1| two component transcriptional regulator, AraC family [Paludibacter propionicigenes WB4] Length = 1140 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+VD + R+ +F + + +A A + E +P+ ++ D M + F Sbjct: 893 LIVDDNEDFREFISSMFI-ENYRILKAEDGKIAYQLIL-EKMPDLVISDVMMPNMDGFEL 950 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++Q + + + L + E G +GA ++ KPFN E L ++++ QK Sbjct: 951 CRLMKQDIRISHIPIILLTAKDGEENKYHGLESGAEDYIPKPFNMEMLSLKVKKIVDRQK 1010 Query: 123 SKDEN 127 + Sbjct: 1011 KIRDQ 1015 >gi|295690169|ref|YP_003593862.1| response regulator receiver modulated diguanylate cyclase [Caulobacter segnis ATCC 21756] gi|295432072|gb|ADG11244.1| response regulator receiver modulated diguanylate cyclase [Caulobacter segnis ATCC 21756] Length = 454 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + V A A +++ P+ +++D M G+ F Sbjct: 4 RILVVDDIEANVRLLEAKLAAEYYEVSTAMDGQTAINMAQRDP-PDIILLDVMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + V + I G AGA+ FL KP + L +R L + Sbjct: 63 TVCRKLKEDPATRHIPVVMITALDGRADRIQGLEAGASDFLTKPIDDVMLFARVRSLTRF 122 Query: 121 QKSKDENQFLDA 132 + DE + +A Sbjct: 123 KLVIDELRQREA 134 Score = 74.8 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + T A + ++++ + +G Sbjct: 155 RVLVVDDNERQAERLAGEL-AADHRPVVETDPETA--RVSASGPVDLVIVNAAAKGFDGL 211 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +R + V L+ D +M+ G N L +P + + L + Q Sbjct: 212 RFTAALRSDERTRHLPVLALVDPDDRARMVKALEIGVNDILTRPVDPQELSARAKTQIQR 271 Query: 121 QKSKD 125 ++ D Sbjct: 272 KRYTD 276 >gi|225857948|ref|YP_002739458.1| response regulator SaeR [Streptococcus pneumoniae 70585] gi|225720881|gb|ACO16735.1| response regulator SaeR [Streptococcus pneumoniae 70585] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +K+ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L + ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYLLPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETELIS 131 >gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 231 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + V + F + + +A +E P+ ++D + + F Sbjct: 4 KILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEK-PDLAILDVMLPDIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ V L + ++ I G GA+ ++ KPFN L ++ + Sbjct: 63 T-ILQKIRETYTFPVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQLRR 119 >gi|224540237|ref|ZP_03680776.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus DSM 14838] gi|224518116|gb|EEF87221.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus DSM 14838] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + N L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM--NIGSYNLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + + + + I Sbjct: 123 TQQGEPERAPEQI 135 >gi|209522707|ref|ZP_03271265.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209496756|gb|EDZ97053.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 580 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +VR+ L F V EAT + E+E P+ ++ D M Sbjct: 1 MKKILIIEDERLVRENLVELLTFENFQVLEATDGLRGVKLAEQE-QPDLILCDVMMPILD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF----AM 114 +A +RQ P + ++ D GA+ ++ KP + L + Sbjct: 60 GYGVLAQLRQNPKTAIIPFIFMTALADRMNTRKAMELGADDYITKPCSAAELMRSITVRL 119 Query: 115 RELPQMQKSKDENQ 128 + MQ+ NQ Sbjct: 120 EKYSNMQRYYQNNQ 133 >gi|165918289|ref|ZP_02218375.1| transcriptional regulatory protein [Coxiella burnetii RSA 334] gi|165918149|gb|EDR36753.1| transcriptional regulatory protein [Coxiella burnetii RSA 334] Length = 245 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + GF A E + K+ + + +++D M G Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAV-DLVILDIMMPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQM + + + L + I G GA+ +L KPFN L +R + + + Sbjct: 66 LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123 >gi|145300860|ref|YP_001143701.1| OmpR family two-component response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853632|gb|ABO91953.1| two-component system response regulator, OmpR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + G V A E + +E + LV+D M G Sbjct: 6 THILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKE-MKRLLEEREFDLLVLDLMMPGEDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ + + + L + I G GA+ +L KPFN L ++ + + Sbjct: 65 LTLC-RELRAKSCMPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRT 123 Query: 122 KSKDE 126 + + Sbjct: 124 NVEPQ 128 >gi|46201806|ref|ZP_00054307.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 241 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 1/122 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + V A E + + E + +V+D + G Sbjct: 8 ILVVDDDREIRDLLTKFLMRHNLRVSAAKDGVEMMKMLD-ERRIDLVVLDLMLPGEDGLS 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + V + L + I G GA+ +L KPFN L ++ + + ++ Sbjct: 67 LCRRMRESRSGVPIVMLTAMGEDTDRIVGLEMGADDYLPKPFNPRELLARIKAVLRRTQA 126 Query: 124 KD 125 + Sbjct: 127 SE 128 >gi|332533238|ref|ZP_08409105.1| Two-component system response regulator OmpR [Pseudoalteromonas haloplanktis ANT/505] gi|332037317|gb|EGI73772.1| Two-component system response regulator OmpR [Pseudoalteromonas haloplanktis ANT/505] Length = 239 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + GF+V A + + + + + +V+D + G Sbjct: 6 TKVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQ-MDRLLERENFHLMVLDLMLPGEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ ++ + L + D I G GA+ ++ KPFN L ++ + + Sbjct: 65 LSICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILR 122 Query: 120 MQKSK 124 + + Sbjct: 123 RRAKE 127 >gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum WAL-14163] gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum WAL-14163] gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 234 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ G+ V++A + + EKE + +++D M G+ Sbjct: 5 NILVVDDEKEIAELVEIYLVSDGYKVYKADNAQAGLDILEKET-IHLVLLDIMMPGMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + L I G GA+ +++KPFN L ++ + Sbjct: 64 EMCKKIRE---TNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 >gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +++ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKP-IDLIITDIMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + D ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETEVVS 131 >gi|258591511|emb|CBE67812.1| Response regulator receiver protein [NC10 bacterium 'Dutch sediment'] Length = 397 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R++ H +G+ V +A +A + + E ++++ D M L Sbjct: 2 RILIVDDDVDMRRLLLHTLQSWGYDVVQAIDGAQAWDLLQNEP-FSFVITDWIMPNLDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +++ L + E++I G AGA+ FL+KPFN L+ +R ++ Sbjct: 61 ELCRRIRGARFTRYIYIILLTAKHSKEELIKGMEAGADDFLIKPFNAGELKVRIRAGERI 120 Query: 121 QKSKDENQ 128 K + + Sbjct: 121 IKLESNLE 128 >gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 227 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D +R V ++ G+ V A A E + +++D M + Sbjct: 5 RILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGG-IDLVILDVLMPELDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ DV + +L + I G G + ++ KPF+ L ++ + + Sbjct: 64 NLCRKLRERG---DVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRR 120 Query: 121 QKSKD 125 ++ Sbjct: 121 VAARR 125 >gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC 4571] gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC 4571] gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus helveticus H10] gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus helveticus H10] Length = 228 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +D+ + + + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 121 QKSK 124 + + Sbjct: 119 SQKQ 122 >gi|163792858|ref|ZP_02186834.1| diguanylate cyclase [alpha proteobacterium BAL199] gi|159181504|gb|EDP66016.1| diguanylate cyclase [alpha proteobacterium BAL199] Length = 377 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V A++ EA E+E P+ +++D M + F Sbjct: 4 RVLVVDDILPNVKLLEAKLSSEYFDVLTASNGPEALAVIEREN-PDIVLLDVMMPVMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P T + V + D + G AGA+ FL KP L R L ++ Sbjct: 63 EVCRRIKADPRTTHLPVVMVTALSDVADRVRGIEAGADDFLTKPVVDSALFARFRSLLRL 122 Query: 121 QKSKDENQFLD 131 + DE + + Sbjct: 123 KMMMDEWRLRE 133 Score = 81.4 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+++ + I + V S E ++ P+ ++ ++E + Sbjct: 156 RLLIIEDNAIDAFNMIESLSVDNGEVKRVASGRAGFEAATRQD-PDLVICSLNLED-DDA 213 Query: 63 IAHV---RQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + + R + + + E +K+ GAN +L+KP +R L Sbjct: 214 LRLLSQFRANEATRHLPILMVGEEDQTDKLAKALDLGANDYLMKPVDRNELLA 266 >gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 250 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 10/127 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ ++R + + G+ + A E + E + +V+D + Sbjct: 20 RILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDLML 79 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G + + L + + G GA+ +L KPF+ L Sbjct: 80 PQISGLDICRLLR--YHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQ 121 R L + Q Sbjct: 138 RALIRRQ 144 >gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + + F GF+ + A +A + +E P+ +V+D + G+ Sbjct: 4 NSVLIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDKI-REQKPDIVVLDLMLPGIDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + R +G D+ + L + + G GA+ ++ KPF+ + +R + + Sbjct: 63 WEVCRRARKIG-DIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILRRS 121 Query: 122 K 122 Sbjct: 122 H 122 >gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1] gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1] Length = 2450 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 2/116 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + G V A + A E EK + +++D M + Sbjct: 2330 KKVLVVDDDMRNIFALTSVLENQGLQVIFAENGRAAIEMLEKNRDVDVVLMDIMMPEMDG 2389 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +RQ + + + + + AGA+ +L KP + + L +R Sbjct: 2390 YETMQAIRQNLQYAQLPIIAITAKALKDDREKCMAAGASDYLPKPVDTDKLIELIR 2445 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 10/126 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ ++ + + GF V A+ E LP+ + +D + V Sbjct: 2062 LLIIEDDLKFARIMAQMAREKGFKVLVASRGDSGLAMA-NEYLPHAITLDIQLPVVDGWS 2120 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---P 118 + +++ + V+ + G GA +L KP ++E L +L Sbjct: 2121 VLERLKRNGRTRHIPVHVIS----VMDKHLGNTHGAFGYLTKPVSKEGLERVFSQLAHFL 2176 Query: 119 QMQKSK 124 + + + Sbjct: 2177 ERKSRR 2182 Score = 71.0 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLF-NDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 LLL++ I R L V + EA E E + LVID + + Sbjct: 2181 RRLLLIEDDDIQRDSLVKLLSEGSDVEVTGVATGQEALHKLE-EGEYDCLVIDLLLPDMD 2239 Query: 61 E--FIAHVRQMPLGTDVFVYY-----LLMEVD 85 + V+ P D+ + L + + Sbjct: 2240 GAKLVEEVKTQPRFRDLPIVIYTGKELTAKDE 2271 >gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W] gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W] gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 231 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|27377399|ref|NP_768928.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350543|dbj|BAC47553.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 527 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD R + G V +A + + +++D M + Sbjct: 184 SILVVDDIEANRDLLSRRLTRDGHRVSSVAGGQQALQAL-ANDEFDLVLLDLMMPDINGL 242 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V + + E + AGA +L KPF+ LR + Sbjct: 243 DVLVRMKADERLRRIPVIMITALAETESAVRCIEAGAEDYLPKPFDPILLRARINACLHK 302 Query: 121 QKSKDENQ 128 ++ +D Q Sbjct: 303 KRWRDREQ 310 >gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ + + + F G+ V + E + +++D + G+ Sbjct: 2 MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEAL-EGDYDLVLLDIMLPGI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +D+ V L + + + + G GA+ ++ KPF+ E L +R + Sbjct: 61 DGF-EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALR 119 Query: 120 MQK 122 +K Sbjct: 120 KKK 122 >gi|289646445|ref|ZP_06477788.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 246 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ +V + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R V + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + GF A +A E + P+ +V+D + G+ Sbjct: 5 RILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRS-APDLVVLDLMLPGLDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V L + + G GA+ +L KPF+ L +R L + + Sbjct: 64 EVCRRLQAERP-VPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRRIE 122 Query: 123 SKD 125 Sbjct: 123 RAR 125 >gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075] gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075] gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC 5463] Length = 228 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +D+ + + + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 121 QKSK 124 + + Sbjct: 119 SQKQ 122 >gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330] gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12] gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330] gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12] Length = 236 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + ++ ++ G+ +A EA L++D M + Sbjct: 9 KILIADDDKEIVELLSIYIHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDGM 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+++ + + + L + I G AGA+ ++ KPFN + ++ L + K Sbjct: 69 -QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 127 Query: 123 SK 124 + Sbjct: 128 MQ 129 >gi|255281904|ref|ZP_05346459.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255267577|gb|EET60782.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD R + + + + G+ V A + A + +KE + +V+D M + Sbjct: 1 MFHILVVDDDKHTRMLLQAILEEAGYTVTTADNGETALDVLDKEH-IDLVVLDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + + + D G G + ++ KP + E + ++ L Sbjct: 60 GYEFTKTIR--ETNDALPILMVTAKQDAADEKQGFLVGTDDYITKPIDEEKMLLRIKALL 117 Query: 119 QMQKSKDENQ 128 + + E + Sbjct: 118 RRAQIVSERK 127 >gi|239620735|ref|ZP_04663766.1| DNA-binding response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132346|ref|YP_003999685.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481680|ref|ZP_07940714.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689647|ref|YP_004209381.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691608|ref|YP_004221178.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|239516311|gb|EEQ56178.1| DNA-binding response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773960|gb|ADQ03448.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916912|gb|EFV38300.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456464|dbj|BAJ67086.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320460983|dbj|BAJ71603.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 240 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ +VD + ++ + + GF A E + P+ +++D + G+ Sbjct: 1 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + L + D ++AG AGA+ ++ KPF L + Sbjct: 60 GTGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARF 116 Query: 119 QMQKSKDEN 127 ++ K E+ Sbjct: 117 RIAKPAAED 125 >gi|253701837|ref|YP_003023026.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251776687|gb|ACT19268.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 441 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L++D + L ++ + ++ A P+ +++D M G+ F Sbjct: 15 VLVIDDDMNNLAIVSSLLQEYSYTIYVAEDGESGIRRALL-TRPDLILLDVLMPGIDGFE 73 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ M D+ V ++ + E+ + G AGA +++KP RE + + ++ Sbjct: 74 TCQRLKAMEGTRDIPVIFMTALAEMEQKVRGFEAGAVDYIVKPLQREEVLARVGVHIHIR 133 Query: 122 KSKDENQFLDA 132 E Q +A Sbjct: 134 HLSKELQETNA 144 >gi|119486032|ref|ZP_01620094.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456807|gb|EAW37935.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 440 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 48/117 (41%), Gaps = 3/117 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ + + G+ V +A + A + + P+ +++D +M + Sbjct: 14 ILVVDDTPANLRLLSKMMTEHGYNVRQAINGKMALTAVKA-VKPDLILLDINMPEMNGYT 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + +L D + + G ++ KPF E + ++ Sbjct: 73 VCETLKKNEETCSIPIIFLSALDDALDKVKAFQVGGVDYVTKPFQLEEILVRIQNQL 129 >gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + GF V + + + + +V+D + G+ Sbjct: 1 MKQILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNY-SIVVLDIMLPGIS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + + V L + I G GA+ ++ KPFN L ++ + + Sbjct: 60 GL-DVLRRLRPQSRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILRR 118 Query: 121 QK 122 + Sbjct: 119 VQ 120 >gi|67459442|ref|YP_247066.1| response regulator PleD [Rickettsia felis URRWXCal2] gi|67004975|gb|AAY61901.1| Regulatory components of sensory transduction system [Rickettsia felis URRWXCal2] Length = 450 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDTILLDVMMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GFEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDIALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 58.3 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 4/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P++++I ++E Sbjct: 152 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDII-NEYTPDFVIISSTLENEDP 209 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + + E ++ G G N + + P L +R + Sbjct: 210 LRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLR 269 Query: 120 MQKSKDENQ 128 ++ +D + Sbjct: 270 RKQYQDNLR 278 >gi|332828824|gb|EGK01516.1| hypothetical protein HMPREF9455_02349 [Dysgonomonas gadei ATCC BAA-286] Length = 1442 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 57/124 (45%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L++D + +R F+ + FMV A + + E+ P+ ++ D M + F Sbjct: 1193 LIIDDNDDIRNFLIDEFSKY-FMVEVAEDGQKGLQKAI-EINPDLIICDVMMPAMDGFEV 1250 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +++ + + L E + G ++GA+++++KPF+ + L + +L + ++ Sbjct: 1251 TRRLKEDFQTCHIPIILLTAHSSIEHQLEGIQSGADAYIMKPFSLKYLVTRVFKLIEQRE 1310 Query: 123 SKDE 126 + Sbjct: 1311 QLKK 1314 >gi|289166996|ref|YP_003445263.1| response regulator [Streptococcus mitis B6] gi|288906561|emb|CBJ21394.1| response regulator [Streptococcus mitis B6] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +K+ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L + ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLIGEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETELIS 131 >gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EAT+ EA + ++ + + ++D + G+ Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLL 120 Query: 119 QMQKSKDE 126 + + +E Sbjct: 121 RRIEVHEE 128 >gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E N +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-NLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 221 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 16/145 (11%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + G+ V A + +A E + P+ L+ D M + Sbjct: 4 TILIVDDEPGISLSVSDYLQLSGYSVVTAANGKQALEMLNR-YQPHLLITDIVMPEMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VRQ P + V +L ++ I G ++G + +L KPF E L +R L Sbjct: 63 DLVRQVRQQPAFRLLPVIFLTGRNKTKERIRGYQSGCDVYLSKPFELEELGAVVRNLLDR 122 Query: 121 -------------QKSKDENQFLDA 132 +++ E + L A Sbjct: 123 MQMIQTDWHIRTKSQARGEMETLAA 147 >gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ +R G+ + EA + EA E + + ++D + + Sbjct: 1 MKEKILVLEDEIGIRSFVSINLKREGYEIIEAGTGAEAIEKINENNDISIALLDVMLPDM 60 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E ++RQ V + L + E + G +GA+ +++KPF+ + L + L Sbjct: 61 SGIEVCKYIRQ--KFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAAL 118 Query: 118 PQMQKSKDENQFLDAI 133 + K ++ + L+ I Sbjct: 119 LRRVKKEESSMKLNKI 134 >gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 226 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D K+ L + G+ V +A + E + P+ +++D M + Sbjct: 3 ILVADDDLPNVKLTAFLLEEAGYKVIKAYDGPSILQSVE-QYNPDLILLDVMMPKTNGFD 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +DV + +L + + G + G + +L+KPF L + + + + Sbjct: 62 VCRQIR---RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRR 118 Query: 122 KS 123 S Sbjct: 119 NS 120 >gi|38232907|ref|NP_938674.1| two-component regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38199165|emb|CAE48790.1| two-component regulatory protein [Corynebacterium diphtheriae] Length = 233 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + G+ V A+S + E + +++D + Sbjct: 5 RVLVVDDEPQMVQIISYALELEGWEVLSASSAQRGWQLL-NEYRCDLVILDVMLPDASGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V L D + + G AGA+ ++ KPF+ + L + + + Sbjct: 64 ALCERIRAAGDVAGTPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRR 123 Query: 121 QKSKDENQFLD 131 + + + Sbjct: 124 SGGVVQPELRE 134 >gi|116490235|ref|YP_809779.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|118586491|ref|ZP_01543935.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] gi|290889617|ref|ZP_06552707.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429] gi|116090960|gb|ABJ56114.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|118433055|gb|EAV39777.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] gi|290480815|gb|EFD89449.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G A S EA +++D M G+ Sbjct: 1 MTKILVVDDDKEIAELLEIYIRNEGNEPVLAYSGEEALSRLNTNPDIALMILDVMMPGMN 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F V+ + T++ + + + I G GA+ ++ KPFN + +R L + Sbjct: 61 GF-DVVKAVRKDTNIPILIVSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 119 Query: 121 QKSKDENQ 128 ++ +++ Sbjct: 120 SSNEVKDE 127 >gi|332993901|gb|AEF03956.1| putative response regulator [Alteromonas sp. SN2] Length = 550 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD I R + + ++ GF EA +A E + +P+ +++D M G+ Sbjct: 1 MK-ILIVDDEPINRTMLVSMLSEAGFTDCVEAACGEDALAIVE-QAIPDLVLLDVIMPGM 58 Query: 60 LEFIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R + G + + ++ D E ++ G N F KPF++ L +R Sbjct: 59 SGFEVAPQIRTLAGGRYLPILFITALDDKESLVKCLEVGGNDFATKPFDKHILTAKIRAH 118 Query: 118 PQMQKS----KDENQFL 130 +++ + +N+ L Sbjct: 119 EKIRNLSAHIEQQNEEL 135 >gi|330811323|ref|YP_004355785.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379431|gb|AEA70781.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 227 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G ++GA+ +L+KPF L + + + Sbjct: 61 TLCKRLREDARL-DTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRR 119 Query: 121 QK 122 + Sbjct: 120 SQ 121 >gi|260435890|ref|ZP_05789860.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260413764|gb|EEX07060.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] Length = 262 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R + GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L + ++G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122 >gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 247 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R + G+ V A+ A P+ +V+D + F Sbjct: 12 TVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQA-GSRRPDLIVLDVMLPDTDGF 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G V +L E I G +G + ++ KPF+ + + +R + + Sbjct: 71 RLTRELRAQ--GVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRR 128 Query: 121 QKS 123 + Sbjct: 129 AGA 131 >gi|153875655|ref|ZP_02003359.1| two-component response regulator [Beggiatoa sp. PS] gi|152067881|gb|EDN66641.1| two-component response regulator [Beggiatoa sp. PS] Length = 335 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 7/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 MD+LL+VD + F V A A + P+ +++D M G Sbjct: 1 MDTLLVVDDVPANVNLLLKFLTQANFKVLVAKDGESALKKAAYAK-PDLILLDVMMPGLT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ ++ + ++ + + G GA ++ KP E + + Sbjct: 60 GFEVCKILKSQTQTQNIPIIFMTALSETVDKVKGFSLGAVDYITKPVQHEEILVRINTHV 119 Query: 119 ----QMQKSKDENQFLD 131 Q +K +++N+ L+ Sbjct: 120 KIHQQQRKIQEQNETLN 136 >gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL D + + GF V A+ A + ++ P+ ++D +M G+ Sbjct: 7 TVLLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTV-RDTPPDLALLDWNMPGMTGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V + + + +A AGA+ F+ KPFN + + L + + Sbjct: 66 DICRRLRDTGVFLPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQ 125 >gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1] gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1] gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1] gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1] gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A + EA +++D M + Sbjct: 1 MK-ILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ + + + L + I G GA+ ++ KPFN + ++ L + Sbjct: 60 G-IEVIKEVRKDSQLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRR 118 Query: 121 QKS 123 ++ Sbjct: 119 SEN 121 >gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + V + V+ + EA E C K + ++D + G+ F Sbjct: 2 NILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALE-CMKTTKIDLAILDVMLPGIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ V L + ++ I G GA+ ++LKPFN L ++ + Sbjct: 61 -EILKKIRERYTFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRRYT 119 Query: 123 SKDENQFLDA 132 +E D+ Sbjct: 120 QYNEGTRTDS 129 >gi|293371358|ref|ZP_06617795.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|294810799|ref|ZP_06769445.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|315919426|ref|ZP_07915666.1| conserved hypothetical protein [Bacteroides sp. D2] gi|292633718|gb|EFF52273.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|294441987|gb|EFG10808.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|313693301|gb|EFS30136.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1358 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LLLV+ + R + DF + + EA E +E PN ++ D M Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1163 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + V L + I GA+S++ KPFN + L + +L + Sbjct: 1164 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1223 Query: 120 MQKSKDEN 127 Q+ + + Sbjct: 1224 QQEKRKQE 1231 >gi|302383482|ref|YP_003819305.1| response regulator receiver modulated diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264] gi|302194110|gb|ADL01682.1| response regulator receiver modulated diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264] Length = 454 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + V + A E P+ +++D M G+ F Sbjct: 4 RILVVDDVEANVRLLEAKLTLEYYDVLTCSDGATAVRLAASEK-PDIILLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + + E I G AGA+ F+ KP + L +R L ++ Sbjct: 63 ETCRRIKADPATNHIPIVLVTALDGREDRIKGLEAGADDFVTKPLDDVVLFARVRSLTRL 122 Query: 121 QKSKDENQFLDA 132 + DE + D Sbjct: 123 KLVMDELRERDE 134 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM--EGVL 60 +L+VD + T + + ++++ + L Sbjct: 155 RVLIVDDNARQAAGIAEELTRE-HRPVIETDAAAGL--ISSKTPVDLMIVNVTAASFDGL 211 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 IA VR + + ++ D +++ G N L++P + E L R + Sbjct: 212 RLIAQVRSADPTRHLPILAVVDPADRPRLVKALELGVNDILMRPVDPEELAARARTQVRR 271 Query: 121 QKSKD 125 ++ D Sbjct: 272 KRYTD 276 >gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 239 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 6/128 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ + G+ V A + P+ +++D + G Sbjct: 16 VLVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRA-VNPDLVLLDVMLPGKDGMS 74 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V + L D ++ G AGA+ ++ KPF + L R + Sbjct: 75 VCREIRAESG---VPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRY 131 Query: 122 KSKDENQF 129 + Q Sbjct: 132 TPPQQAQL 139 >gi|222148304|ref|YP_002549261.1| response regulator PleD [Agrobacterium vitis S4] gi|221735292|gb|ACM36255.1| two component response regulator [Agrobacterium vitis S4] Length = 457 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A +A + C++ + +++D M G+ F Sbjct: 5 RILVVDDVPANVKLLEARLLAEYFEVLTAEDGLKALDICDR-TQVDVVLLDVMMPGIDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + + G +AGA+ FL KP N L ++ L ++ Sbjct: 64 EVCERLKSSPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLISRVKSLVRL 123 Query: 121 QKSKDENQFLDA 132 + DE + Sbjct: 124 KTLSDELRIRAE 135 Score = 66.0 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 45/127 (35%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61 +LLVDS ++ V + A E + ++++ ++E Sbjct: 159 VLLVDSRASSQERIIKALKPV-ADVVAMSDAQAALFEA-AESNFDLVIVNGTLEDYDPLR 216 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + + + + ++ G N ++++P + L + + Sbjct: 217 LCSQLRSLDRTRFIPILLIADQGEEYLIVRALDLGVNDYIVRPVDTNELLARTLTQLRRK 276 Query: 122 KSKDENQ 128 + D + Sbjct: 277 RYNDRLR 283 >gi|219666561|ref|YP_002456996.1| signal transduction histidine kinase, LytS [Desulfitobacterium hafniense DCB-2] gi|219536821|gb|ACL18560.1| signal transduction histidine kinase, LytS [Desulfitobacterium hafniense DCB-2] Length = 1022 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 9/139 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD +V + + V A S +A E + E + L+ D M G+ Sbjct: 693 MKKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEK-FHLLLTDLMMPGMS 750 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +RQ ++ + ++ + GAN ++ KPF E +++ +R L Sbjct: 751 GIELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLL 810 Query: 119 QM-----QKSKDENQFLDA 132 ++ + + E +L A Sbjct: 811 KLTDTMEKAFESEMAYLQA 829 >gi|189464019|ref|ZP_03012804.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM 17393] gi|189438592|gb|EDV07577.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM 17393] Length = 1399 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLLV+ + + + L + + AT EA E E + +V D M + Sbjct: 1142 TLLLVEDNEDLLALMVKLLGAE-YDICTATDGKEALEVVESAD-IDLIVSDVMMPVMDGI 1199 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F V+ + + + L + E + +GA++F+ KPFN L + L + Sbjct: 1200 EFCKAVKGNFDTSHIPLILLTAKSKEEDRVEAYESGADAFIAKPFNLSILHARIGNLLKS 1259 Query: 121 QK 122 ++ Sbjct: 1260 RE 1261 >gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EAT+ EA + ++ + + ++D + G+ Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 117 Query: 119 QMQKSKDE 126 + + +E Sbjct: 118 RRIEVHEE 125 >gi|149198961|ref|ZP_01876002.1| serine/threonine kinase [Lentisphaera araneosa HTCC2155] gi|149137956|gb|EDM26368.1| serine/threonine kinase [Lentisphaera araneosa HTCC2155] Length = 704 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + +V V A +A EK P+ +++D M E Sbjct: 9 ILIVDDNANNLQVLFKTLAVLDAKVLVAKGGLQALVTVEK-RKPSLILLDIMMPDKDGYE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A +++ D+ + +L + + G GA F+ KPF E + ++ +++ Sbjct: 68 VCAELKENEETKDIPIIFLSALGQVQDKVKGLDLGAVDFITKPFQAEEVVSRVKTQLRLK 127 Query: 122 K----SKDENQFLDA 132 + KD+N L+A Sbjct: 128 RLSESLKDKNALLEA 142 >gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630] gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196] gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291] gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium difficile] gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196] gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R + + G+ V +A EA + +KE + +++D M + Sbjct: 3 NTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKEN-IHLMILDIMMPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ ++ + L + + I G GA+ +L KPFN L ++ L + Sbjct: 62 IEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|114568628|ref|YP_755308.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339090|gb|ABI64370.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 236 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ LVD + G+ V A E P+ + D M + Sbjct: 1 MATIALVDDDENIITSVSIFLEGEGYNVRTYNDGASALTAL-AEDPPDLGIFDIKMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +++ V +L + D G GA+ ++ KPF++ L ++ + + Sbjct: 60 GL-ELLRRLRQSSNLPVIFLTSKDDEFDEALGLNLGADDYIAKPFSQRLLGERVKAVLRR 118 Query: 121 QKSKDE 126 + E Sbjct: 119 ARLSGE 124 >gi|186684616|ref|YP_001867812.1| response regulator receiver modulated diguanylate phosphodiesterase [Nostoc punctiforme PCC 73102] gi|186467068|gb|ACC82869.1| response regulator receiver modulated diguanylate phosphodiesterase [Nostoc punctiforme PCC 73102] Length = 406 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ VR+ L F A + E +P+ ++ D M Sbjct: 1 MPKILIIEDEEAVRENILDLLEAEDFETIAAANGRIGVHLAICE-VPDLILCDMMMPEID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ P + +L + G GA+ ++ KPF+R L A+ Sbjct: 60 GYGVLTALRQDPSTATIPFIFLTAKSAKSDFRQGMDMGADDYITKPFSRAELLSAIMNRL 119 Query: 119 QMQKSKDE 126 + + + Sbjct: 120 EKYATLKK 127 >gi|315919193|ref|ZP_07915433.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693068|gb|EFS29903.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1409 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + + + V EA EA + ++++ D M + Sbjct: 1157 TILVVEDNVDMRGYIRSILREQ-YNVLEAADGEEALHILNSNPV-DFIISDLMMPVMDGV 1214 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E + R G + +LLKPF+ L ++ + + Sbjct: 1215 ELSRRVKDTFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILEN 1274 Query: 121 QKSKDENQFLD 131 +K LD Sbjct: 1275 RKRYQRKFTLD 1285 >gi|260170861|ref|ZP_05757273.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1384 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + + + V EA EA + ++++ D M + Sbjct: 1132 TILVVEDNVDMRGYIRSILREQ-YNVLEAADGEEALHILNSNPV-DFIISDLMMPVMDGV 1189 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E + R G + +LLKPF+ L ++ + + Sbjct: 1190 ELSRRVKDTFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILEN 1249 Query: 121 QKSKDENQFLD 131 +K LD Sbjct: 1250 RKRYQRKFTLD 1260 >gi|238925300|ref|YP_002938817.1| two-component response regulator [Eubacterium rectale ATCC 33656] gi|238876976|gb|ACR76683.1| two-component response regulator [Eubacterium rectale ATCC 33656] gi|291524406|emb|CBK89993.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291527577|emb|CBK93163.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + G+ V A + EA + K + +++D M + Sbjct: 1 MYKVLVCDDEKDIVSAISIYLTSDGYEVIPARNGLEALDIV-KHNDVHLVLMDIMMPVMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A V ++ ++V V L + + + G GA+ ++ KPFN L+ ++ + Sbjct: 60 GIEAMV-EIRKISNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNPVELQARVKSQIRR 118 >gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 226 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + + GF A A +E P+ +++D + G + Sbjct: 5 KILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRE-RPDLVLLDLMLPGIDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +DV + L + D ++ G +GA+ ++ KPF L +R + Sbjct: 64 EVCRLIRAE---SDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE 120 Query: 121 QKSK 124 ++K Sbjct: 121 GEAK 124 >gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1245 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + ++V L G V A + A E + + +++D M + + Sbjct: 987 RVLLVEDNDMNQQVACELLTSAGIEVTVADNGHTAVELAAQH-RFDTVLMDIQMPVMDGY 1045 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R D+ + + + +G N ++ KP N + L + + Sbjct: 1046 EASRLIRADQACRDLPIIAMTAHAMPQDRQRCLESGMNDYVSKPINPQELYSTLERWGRA 1105 Query: 121 QKSKDENQFLDAI 133 + ++ Sbjct: 1106 ASGIPDQSRAASL 1118 Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 38/123 (30%), Gaps = 5/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP---NYLVIDESME 57 M LL++D S R + LF G A S E E+ P L S Sbjct: 837 MK-LLVLDDSARSRDIFEGLFYSLGCRAELAASAQEGLGCLERSEKPYDLLLLDDSLSGL 895 Query: 58 GVLEFIAHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 VR+M + + D E G + L +P +L A+ Sbjct: 896 DGFAVARQVRRMSPLHHQPKIIMITGYGDEEAHKQVVEEGLDGCLTRPVTLRSLFDAVVA 955 Query: 117 LPQ 119 + Sbjct: 956 AFE 958 >gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] Length = 295 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDS-----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M +L+VD S + N G+ A + +A EK + P+ +++D Sbjct: 1 MKHNNSDVVLVVDDSPESLGMLNVALNSQGYTALVALNGLQALAIAEK-VPPDVVLLDAM 59 Query: 56 MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 M + F R + + + ++ D E ++ G AG ++ KP + + + ++ Sbjct: 60 MPQMDGFETCRRLKLILPNTPIIFMTGLTDVEDVVKGFEAGGVDYVTKPISPDEVIARIK 119 Query: 116 ELPQMQKS 123 + K Sbjct: 120 RHIETAKL 127 >gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4] gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03] gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4] gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03] gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 228 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +++ + + + I G GA+ +++KPFN + +R L + Sbjct: 60 G-IEVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118 Query: 121 QKSK 124 + + Sbjct: 119 SQKE 122 >gi|326387405|ref|ZP_08209014.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208061|gb|EGD58869.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 263 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+LLV+ +R + G+ V A++ E E + + +V+D + G Sbjct: 32 KSILLVEDDPALRLLTARALRAHGYDVGTASTGAEMWVALESGAV-DLIVLDIMLPGQTG 90 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ +DV V ++ + + G GA+ +L KPF L + + + Sbjct: 91 IELFRRLRRD---SDVPVIFISARGSEDDRVLGLELGADDYLPKPFGTRELIARIGAVLR 147 Query: 120 MQKSKDE 126 +++DE Sbjct: 148 RGQAEDE 154 >gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5] Length = 231 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + + G+ V +A EA + E E + + LV+D M + Sbjct: 1 MYNILVCDDDKEIVEAIEIYLSQEGYHVLKAYDGAEALKMLESEDV-HLLVLDVMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRATLKIRENNS-IPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 118 >gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 239 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLLVD +R+ GF V + EAR + +++D M G Sbjct: 7 LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARMRLNAN-AIDLVILDIMMPGEDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H+R+ +++ V L + + I G GA+ ++LKPF+ L ++ + + Sbjct: 66 LCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 121 >gi|297153701|gb|ADI03413.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 227 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + V A A P+ +V+D + + Sbjct: 1 MTRVLVVEDDPQLVRALVINLQARHYDVDAAPDGTTALRLAASH-QPDVVVLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + T V V L E+ +A AGA+ ++ KPF+ + L +R + Sbjct: 60 GV-DVIKALRGWTPVPVLVLSARRASEEKVAALDAGADDYMTKPFSMDELLARLRASVRR 118 Query: 121 QKS 123 ++ Sbjct: 119 TEA 121 >gi|326203229|ref|ZP_08193094.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325986487|gb|EGD47318.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 223 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + + G V EA EA + C +E+ + +V+D M + Sbjct: 1 MYKILIVDDEAGIRDIIKKYAVFEGHEVVEAADGMEAIQVC-REMEFDIIVMDVMMPELD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ V L + I G G + +++KPF+ + L + + Sbjct: 60 GFSACKEIRK---FCMTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVNAIV 116 Query: 119 QM 120 + Sbjct: 117 KR 118 >gi|253568235|ref|ZP_04845646.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251842308|gb|EES70388.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1329 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + + V + EA KE P ++ D M + Sbjct: 1063 QRILIVEDNDELRAYLVNSLSPM-YNVQACGNGKEAL-IIVKEFWPELILSDIMMPEMRG 1120 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L + + ++ G GA+ +++KPF+ L+ ++ L Sbjct: 1121 DELCSTIKNDIETSHIPVLLLTALGEEQNILDGLDIGADEYIVKPFSIRILKASIANLLA 1180 Query: 120 MQKSKD 125 + Sbjct: 1181 NRALLR 1186 >gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 6/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F + + V EA EA E+E + + +++D + + Sbjct: 3 KTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEV-HLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQ 121 + Sbjct: 119 SR 120 >gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3] gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQK 122 +K Sbjct: 119 SRK 121 >gi|220918717|ref|YP_002494021.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956571|gb|ACL66955.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] Length = 322 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD S + G+ V A +A E P+ +++D + + Sbjct: 7 ILVVDDSRTQLDWLVRVLEREGYDVRTAADGKDAIRKVRGEP-PDLVLLDMILPDMDGLE 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V+ P + V L ++ D + +AG R GA+ FL KPF + + +++ Sbjct: 66 VLRIVKARPEDQFIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRIK 125 Query: 122 KSKDENQ 128 +D+ + Sbjct: 126 TLQDQLR 132 >gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 222 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + + G+ + EA + + + +++D + Sbjct: 1 MK-ILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSY-DLIILDIMLPKKD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + L + + G +GA+ +L+KPF+ + L +R L + Sbjct: 59 GITVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRR 118 Query: 121 Q 121 + Sbjct: 119 E 119 >gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] Length = 236 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +V+ ++++ R + G+ V E E++ P+ V+D + GV Sbjct: 4 KLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKK-PDLFVLDIMLPGVDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ + + L + D + G GA+ ++ KPF+ ++ + Sbjct: 63 FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 122 Query: 120 MQKSKDEN 127 Q EN Sbjct: 123 RQADSFEN 130 >gi|29346368|ref|NP_809871.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338263|gb|AAO76065.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1329 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + + V + EA KE P ++ D M + Sbjct: 1063 QRILIVEDNDELRAYLVNSLSPM-YNVQACGNGKEAL-IIVKEFWPELILSDIMMPEMRG 1120 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + ++ + + V L + + ++ G GA+ +++KPF+ L+ ++ L Sbjct: 1121 DELCSTIKNDIETSHIPVLLLTALGEEQNILDGLDIGADEYIVKPFSIRILKASIANLLA 1180 Query: 120 MQKSKD 125 + Sbjct: 1181 NRALLR 1186 >gi|89893285|ref|YP_516772.1| hypothetical protein DSY0539 [Desulfitobacterium hafniense Y51] gi|89332733|dbj|BAE82328.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1022 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 9/139 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD +V + + V A S +A E + E + L+ D M G+ Sbjct: 693 MKKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEK-FHLLLTDLMMPGMS 750 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +RQ ++ + ++ + GAN ++ KPF E +++ +R L Sbjct: 751 GIELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLL 810 Query: 119 QM-----QKSKDENQFLDA 132 ++ + + E +L A Sbjct: 811 KLTDTMEKAFESEMAYLQA 829 >gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ ++ + D G+ A EA E K + +++D M + Sbjct: 3 KTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELF-KSKQVDLILLDIMMPKLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L + + G GA+ ++ KPF+ + L + L + Sbjct: 62 LSVCRTIRKQD--SRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLK 119 Query: 120 MQKSKDEN 127 + + Sbjct: 120 RADAGAQE 127 >gi|300786407|ref|YP_003766698.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] gi|299795921|gb|ADJ46296.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] Length = 1516 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + G V A + E + +++D M + Sbjct: 1396 RTVLIVDDDPRNVYALTGILELHGMHVLHAEDGRKGVETVASHPGIDLILMDVMMPEMDG 1455 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R MP + + + + +GA ++ KP + + L ++ Sbjct: 1456 YTATAKIRAMPEHAGIPIVAVTAKAMPGDREKSLASGATDYVTKPVDADDLIARIKRHV 1514 >gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ + GF V E + L++D + GV Sbjct: 1 MSRILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHED-FDLLILDLMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR++ + + + + + I G GA+ ++ KPF+ + ++ Sbjct: 60 GFEICRKVREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHL 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597] gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597] Length = 231 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +++ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKP-IDLIITDIMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + D ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETEVVS 131 >gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21] gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ V + + + V A E + E + +V+D + L Sbjct: 2 RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLAL-EKPFDLIVLDWMLPKKDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + L + E ++AG +G++ +L KPF L +R L + Sbjct: 61 SVLKELRERKNL--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRR 118 Query: 121 QKS 123 + Sbjct: 119 SEL 121 >gi|160886454|ref|ZP_02067457.1| hypothetical protein BACOVA_04465 [Bacteroides ovatus ATCC 8483] gi|156108339|gb|EDO10084.1| hypothetical protein BACOVA_04465 [Bacteroides ovatus ATCC 8483] Length = 1337 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ + V ++ EA E P ++ D M + Sbjct: 1071 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1128 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1129 GDELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLL 1188 Query: 119 QMQKSKD 125 + Sbjct: 1189 ANRALLR 1195 >gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] Length = 1438 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + G V A + E E + + +++D M + Sbjct: 1309 RTVLVVDDDARNLYALSGILELHGINVLHAENGIEGIEALREHPGIDLILMDVMMPEMDG 1368 Query: 62 FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + A +R++P + + + + AGA+ ++ KP + + L +R Sbjct: 1369 YTATMKIREVPAHATLPIVSVTAKAMPGDREKSLAAGASDYVTKPLDADDLIACVRRWLG 1428 Query: 120 MQKSKD 125 + + Sbjct: 1429 RRSDEA 1434 >gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 319 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|290958330|ref|YP_003489512.1| two component response regulator [Streptomyces scabiei 87.22] gi|260647856|emb|CBG70961.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 246 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LL + +R G+ V EA + P+ LV+D M G+ Sbjct: 3 QNVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAQAHR-TRPDVLVLDVMMPGIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R G + L V+ IAG AGA+ +++KPF+ E + +R L + Sbjct: 62 LQVCRVLRA--EGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 119 Query: 120 MQKSKD 125 + D Sbjct: 120 RTGNAD 125 >gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ +R++ + G+ V EA EA E ++ + +++D + + Sbjct: 4 SILIVEDEDRMRELIKAYLRREGYSVLEAADGKEALEMFDRNS-ISLVILDIMLPLLDGW 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++R+ V + L + + + + G GA+ ++ KP + + L ++ L + Sbjct: 63 TVCTNIREKSE---VPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLLKR 119 Query: 121 QK 122 + Sbjct: 120 IQ 121 >gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + + G V +A +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAF-REARPDLVLLDVMLPGL 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R V + L D ++ G +GA+ +++KPF + L +R Sbjct: 60 DGMEVCRRIRAESG---VPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRAR 116 Query: 118 PQM 120 + Sbjct: 117 LRR 119 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073634|gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + G AT+ E +E + +V+D ++ G Sbjct: 8 THILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSE-MRRVLEESRVDLIVLDLTLPGEDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + V V L + I G GA+ +L KPF L +R + + Sbjct: 67 LTLC-RNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRT 125 Query: 122 KSKDEN 127 ++ N Sbjct: 126 QALPPN 131 >gi|299146431|ref|ZP_07039499.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298516922|gb|EFI40803.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1360 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LLLV+ + R + DF + + EA E +E PN ++ D M Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1165 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + V L + I GA+S++ KPFN + L + +L + Sbjct: 1166 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1225 Query: 120 MQKSKDEN 127 Q+ + + Sbjct: 1226 QQEKRKQE 1233 >gi|197334071|ref|YP_002154883.1| protein PetR [Vibrio fischeri MJ11] gi|197315561|gb|ACH65008.1| protein PetR [Vibrio fischeri MJ11] Length = 239 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQ-MDRLLARETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123 >gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R + + N+ + A S EA + +E + +++D M Sbjct: 2 MTTVLIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREK-IDLVLLDVMMPHED 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R M ++V + +L E + G G + +++KPF + L + + Sbjct: 61 GFVVCQSIRAM---SNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVL 117 Query: 119 QMQKS 123 + + Sbjct: 118 RRSGA 122 >gi|160887592|ref|ZP_02068595.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483] gi|156108003|gb|EDO09748.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483] Length = 1360 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LLLV+ + R + DF + + EA E +E PN ++ D M Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1165 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + V L + I GA+S++ KPFN + L + +L + Sbjct: 1166 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1225 Query: 120 MQKSKDEN 127 Q+ + + Sbjct: 1226 QQEKRKQE 1233 >gi|110597968|ref|ZP_01386249.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110340417|gb|EAT58906.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 231 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+V+ + K+ G+ + S A E + + +++D + G+ F Sbjct: 6 LLVVEDDRNLSKLLEFNLERAGYACKISESGENAFEQLSR-KCFDLILLDIMLPGMNGFE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 ++Q + D+ + L + + I G G + +++KPF+ L +R + + Sbjct: 65 LCQKIKQHQIYKDIPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAVLKRD 124 Query: 120 MQKSKDENQFLD 131 +KS + L+ Sbjct: 125 RRKSAKMQEILN 136 >gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 235 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R++ L + GF+V+EA++ A EK + +++D M Sbjct: 4 MKKNAIILIVDDDEEIREIINILLSREGFVVWEASNANTAMAMLEK--PVDLIILDIMMP 61 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G E +R++ T V + +L + G G + +L+KPF++ L ++ Sbjct: 62 GRNGFELCTEIRKI---TTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIK 118 Query: 116 ELPQM 120 L + Sbjct: 119 ALLRR 123 >gi|186681435|ref|YP_001864631.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186463887|gb|ACC79688.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 364 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L VD V + D G+ + A E E P+ +++D M Sbjct: 11 KILAVDDVFDNLLVLEAVLEDEGYEISLVEDSKIALAMVE-ESPPDIILLDVMMPEIDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF +RQ P + + L ++ G AGA+ F+ KPF+ + L +R L ++ Sbjct: 70 EFTRRIRQNPALPFIPILLLTAHYQ-SSVVEGLDAGADDFIRKPFDPDELHARVRSLLRL 128 Query: 121 QKSKDENQFLDAI 133 + S DE + + Sbjct: 129 KHSIDERDQMANL 141 >gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 736 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + R+ G V AT+ CEA + E++ + +++D M + Sbjct: 610 RILLAEDEQLNREFVTFFLLGEGHTVTTATNGCEALDLLERQD-FDVVLMDVQMPELDGL 668 Query: 63 --IAHVRQMPL--GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V + L E AG + +L KP + + LR ++ + Sbjct: 669 EATRRIRSLEKPDKAHVPIIALTAYAMKEDRERVMAAGMDDYLSKPLDMDELRRSLARIL 728 Query: 119 -QMQKSK 124 + +K + Sbjct: 729 AERKKLE 735 >gi|330821098|ref|YP_004349960.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327373093|gb|AEA64448.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1246 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++ D + +R L + V A +E P+ ++ D M + F Sbjct: 604 RIVVADDNADMRDYLLALLGGA-YRVEAVDDGLRALAAAHREP-PDLVLTDVMMPNLDGF 661 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +V V L + I AG + +L+KPF+ L + + + Sbjct: 662 ALREALRAEAATREVPVIMLSARAGEQARIEAIDAGVDDYLVKPFSARELLARIGAVLER 721 Query: 121 QKSKDENQFLDA 132 E + + Sbjct: 722 DAELRERRAVQE 733 Score = 98.3 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 3/122 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + L G V A S EA E L P+ +++D + G+ Sbjct: 1126 RRVLVVDDNQDAANALAALLETDGHQVTVAYSAPEALALAES-LRPDAVLLDIGLPGMDG 1184 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R P + + AG ++ L+KP L+ +R+ Sbjct: 1185 HEVARRMRASPRLRRAQLIAVTGYGQASDRENSMSAGFDAHLVKPVAVPLLQRMLRQAGA 1244 Query: 120 MQ 121 + Sbjct: 1245 RR 1246 >gi|298483251|ref|ZP_07001430.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298270568|gb|EFI12150.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1314 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 ++L+VD + + + F G+ + A EA + +P+ +V D M + Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + V L D + I+G + GA+ +L KPF E L +R Sbjct: 1115 GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 Query: 119 QMQKSKDENQFLDA 132 + ++ + ++L+A Sbjct: 1175 KNREYTKK-RYLNA 1187 >gi|298387105|ref|ZP_06996659.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298260255|gb|EFI03125.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1354 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA + +K+ +P+ ++ D M Sbjct: 1088 KRIEDAKMLIVEDNESIKQMLAGIFETF-YQVTTASDGVEALDIIQKD-MPSIILSDVVM 1145 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1146 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAVEHNIEGLKIGADDYITKPFNTNLLISRC 1205 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1206 NNLVNSRRLLQE 1217 >gi|295085850|emb|CBK67373.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1314 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 ++L+VD + + + F G+ + A EA + +P+ +V D M + Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + V L D + I+G + GA+ +L KPF E L +R Sbjct: 1115 GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 Query: 119 QMQKSKDENQFLDA 132 + ++ + ++L+A Sbjct: 1175 KNREYTKK-RYLNA 1187 >gi|293369312|ref|ZP_06615899.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292635642|gb|EFF54147.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1139 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 ++L+VD + + + F G+ + A EA + +P+ +V D M + Sbjct: 883 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 939 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + V L D + I+G + GA+ +L KPF E L +R Sbjct: 940 GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 999 Query: 119 QMQKSKDENQFLDA 132 + ++ + ++L+A Sbjct: 1000 KNREYTKK-RYLNA 1012 >gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ + F V + + + ++D + G+ Sbjct: 1 MSRILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNY-DMYILDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + +V + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFELCKRIREV-KNVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLAR 118 Query: 121 QK 122 + Sbjct: 119 YE 120 >gi|253568914|ref|ZP_04846324.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840933|gb|EES69014.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1354 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA + +K+ +P+ ++ D M Sbjct: 1088 KRIEDAKMLIVEDNESIKQMLAGIFETF-YQVTTASDGVEALDIIQKD-MPSIILSDVVM 1145 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1146 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAVEHNIEGLKIGADDYITKPFNTNLLISRC 1205 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1206 NNLVNSRRLLQE 1217 >gi|237722073|ref|ZP_04552554.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448942|gb|EEO54733.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1314 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 ++L+VD + + + F G+ + A EA + +P+ +V D M + Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + V L D + I+G + GA+ +L KPF E L +R Sbjct: 1115 GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 Query: 119 QMQKSKDENQFLDA 132 + ++ + ++L+A Sbjct: 1175 KNREYTKK-RYLNA 1187 >gi|237716960|ref|ZP_04547441.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405729|ref|ZP_06082279.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294644469|ref|ZP_06722230.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806819|ref|ZP_06765645.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229442943|gb|EEO48734.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356604|gb|EEZ05694.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292640191|gb|EFF58448.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294445989|gb|EFG14630.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1314 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 ++L+VD + + + F G+ + A EA + +P+ +V D M + Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + V L D + I+G + GA+ +L KPF E L +R Sbjct: 1115 GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 Query: 119 QMQKSKDENQFLDA 132 + ++ + ++L+A Sbjct: 1175 KNREYTKK-RYLNA 1187 >gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V + + EA + E N +++D M + F Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSE-QFNLILMDIMMPKLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + T++ + +L + + I G +G + ++ KPF+ L + + + Sbjct: 63 -GAIKGIKKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119 >gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] Length = 246 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ V R + G+ V +A E+ + +V+D + G+ F Sbjct: 2 RVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRA-TEIAYDAIVLDLMLPGIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L VD + I G AGA+ +L KPF+ L +R L + Sbjct: 61 EVCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 118 >gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 231 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|77361753|ref|YP_341328.1| osmolarity response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76876664|emb|CAI87886.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Pseudoalteromonas haloplanktis TAC125] Length = 239 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + GF+V A + + + + + +V+D + G Sbjct: 6 TKVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQ-MDRLIERENFHLMVLDLMLPGEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ D+ + L + D I G GA+ ++ KPFN L ++ + + Sbjct: 65 LSICRRLRQKEN--DIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILR 122 Query: 120 MQKSK 124 + + Sbjct: 123 RRAKE 127 >gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 271 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A A + ++ P+ +V+D + + Sbjct: 46 RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTA-RDFRPDAVVLDMMLPDMDGL 104 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 105 SVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 164 Query: 123 SKDENQFLDAI 133 + D + D++ Sbjct: 165 AAD--RRSDSV 173 >gi|331000912|ref|ZP_08324549.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Parasutterella excrementihominis YIT 11859] gi|329569871|gb|EGG51628.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Parasutterella excrementihominis YIT 11859] Length = 235 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF V A+ +A E K P+ +++D M + Sbjct: 6 ILIVDDESKIRRLLAQNLELEGFDVQTASDGAQALEVYNKSVEKPDLILLDLMMPEIDGM 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++++ +DV V L + + +I G R GA+ F+ KPF E L +R + + K Sbjct: 66 -SMLKRLRKSSDVPVIILSAKDERPTVIEGFREGADDFVSKPFYIEELMERIRAVLRRGK 124 Query: 123 SKD 125 ++ Sbjct: 125 TRS 127 >gi|298384668|ref|ZP_06994228.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298262947|gb|EFI05811.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1420 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + +R R + + + V EA + EA ++++ D M + Sbjct: 1168 SILVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNP-IDFIISDLMMPVMDGI 1225 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V++ + + L + E + R G + +LLKPF+ L ++ + + Sbjct: 1226 ELSRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILEN 1285 Query: 121 QKSKDENQFLD 131 +K LD Sbjct: 1286 RKRYQRKFTLD 1296 >gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ VR V A S + E + + +V+D + G+ Sbjct: 1 MARVLLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLAR-FAADVVVLDLMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G AGA+ +++KP + L +R + Sbjct: 60 GFEVCRRIRAASSTS---IVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|237722419|ref|ZP_04552900.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|260171106|ref|ZP_05757518.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] gi|229448229|gb|EEO54020.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1360 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LLLV+ + R + DF + + EA E +E PN ++ D M Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1165 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + V L + I GA+S++ KPFN + L + +L + Sbjct: 1166 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1225 Query: 120 MQKSKDEN 127 Q+ + + Sbjct: 1226 QQEKRKQE 1233 >gi|237713735|ref|ZP_04544216.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262409359|ref|ZP_06085902.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446182|gb|EEO51973.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262352811|gb|EEZ01908.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1205 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ + V ++ EA E P ++ D M + Sbjct: 940 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 997 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 998 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1057 Query: 120 MQKSKD 125 + Sbjct: 1058 NRALLR 1063 >gi|258406362|ref|YP_003199104.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] gi|257798589|gb|ACV69526.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] Length = 464 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM--EG 58 M ++L+VD +R V G A + +A + + + +++D + E Sbjct: 1 MATVLIVDDDASLRVVLEIALERRGHCPLTAENSEQALSAVQNNGV-DLVLLDVRLGQEN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + VRQ D+ V + D + + GA+ ++ KPF+ + L + Sbjct: 60 GVDLLRLVRQN--WADLPVIMITAYADSHSAVEAMKLGASDYIHKPFDVQELLLVVERSL 117 Query: 119 QMQKSKDENQFLD 131 + + ++EN++L Sbjct: 118 KTSRLQEENRWLK 130 >gi|188579430|ref|YP_001922875.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179342928|gb|ACB78340.1| response regulator receiver sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 1048 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L D + +R L V A E K + L+ D M + Sbjct: 618 RIVLADDNADMRAYAERLLGR-DHQVVAVGDGAAALEALRKAPA-DLLLTDVMMPVLDGI 675 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR P V V L E + G AGA+ +L+KPF+ L+ +R ++ Sbjct: 676 ALTRAVRADPALRTVPVIMLSARAGAEAGVEGLEAGADDYLVKPFSARELQARVRANLEL 735 Query: 121 QKSKDENQ 128 + + E Q Sbjct: 736 SRLRAEAQ 743 Score = 39.8 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 12/25 (48%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGF 26 +L+VD VR V L + G+ Sbjct: 1000 TRILVVDDDPQVRAVAVTLLEELGY 1024 >gi|1729783|emb|CAA70931.1| colR [Pseudomonas fluorescens] Length = 227 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G ++GA+ +L+KPF L + + + Sbjct: 61 TLCKRLREDARL-DTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRR 119 Query: 121 QK 122 + Sbjct: 120 SQ 121 >gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + V + + + + EA +++ +++++D + + Sbjct: 6 KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQS-FDFVILDLMLPDLSG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + L +V+ I G GA+ ++ KPF+ + L +R + + Sbjct: 65 EEICKRIRLQ---SQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMR 121 Query: 120 MQKSK 124 ++ Sbjct: 122 RTNNE 126 >gi|163848634|ref|YP_001636678.1| metal dependent phophohydrolase [Chloroflexus aurantiacus J-10-fl] gi|222526570|ref|YP_002571041.1| response regulator receiver modulated metal dependent phosphohydrolase [Chloroflexus sp. Y-400-fl] gi|163669923|gb|ABY36289.1| metal dependent phophohydrolase [Chloroflexus aurantiacus J-10-fl] gi|222450449|gb|ACM54715.1| response regulator receiver modulated metal dependent phosphohydrolase [Chloroflexus sp. Y-400-fl] Length = 357 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 6/135 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D VR + L +V A S E LP+ +++D M + F Sbjct: 7 NVLVIDDDPNVRDILSSLLKRERCVVRTAASGQIGIAAARSE-LPDLILLDVMMPDLDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117 +R+ PL +V + + D + G +AGA+ FL KP LR +R + Sbjct: 66 SVCRMLREDPLTAEVPIIMITALDDRASRLEGVKAGADEFLSKPVELSELRLRVRTMQRI 125 Query: 118 PQMQKSKDENQFLDA 132 + ++ +E + A Sbjct: 126 NRYRRLIEERERAAA 140 >gi|298385839|ref|ZP_06995396.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298261067|gb|EFI03934.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1376 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F+D F V ++ E ++ +P+ +V D M + Sbjct: 1110 LLIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQAL-NRIPDIIVSDIMMPVMDGIT 1167 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 +++ + + V L + + G GA+S+L KPF+ LR + L Sbjct: 1168 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLDSR 1227 Query: 121 QKSKDENQF 129 +K + Q Sbjct: 1228 KKLIAQFQQ 1236 >gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 234 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+V+ + + R + G+ V A++ E E K + + L++D + G+ Sbjct: 4 RLLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDF-KMKMYDLLIVDIMLPGMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +DV + + I G + GA+ ++ KPF+ + + L + Sbjct: 63 SLCQSIRWV---SDVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRR 119 Query: 121 QKSKDENQFLDAI 133 K + ++ + I Sbjct: 120 YKRMNSSEEQEEI 132 >gi|294339068|emb|CAZ87417.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] Length = 240 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + G V A E + +V+D + G Sbjct: 7 ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGK-AMERALVAARIDLIVLDLMLPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 RQ+ +D+ V L D + G GA+ +L KPF+ L ++ + + +S Sbjct: 66 LC-RQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124 >gi|253569176|ref|ZP_04846586.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841195|gb|EES69276.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1376 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F+D F V ++ E ++ +P+ +V D M + Sbjct: 1110 LLIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQAL-NRIPDIIVSDIMMPVMDGIT 1167 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 +++ + + V L + + G GA+S+L KPF+ LR + L Sbjct: 1168 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLDSR 1227 Query: 121 QKSKDENQF 129 +K + Q Sbjct: 1228 KKLIAQFQQ 1236 >gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 3/130 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + + + +++ +A C +E + ++D M G+ Sbjct: 1 MKTKILVVDDEKEIADLVELYLKNENYEIYKFYDPLQAL-ACIEEQPVDLAILDVMMPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + V L +V+ I G GA+ ++ KPF+ + ++ + Sbjct: 60 DGFALCAKIRDKY-TFPVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQLR 118 Query: 120 MQKSKDENQF 129 +E + Sbjct: 119 RYTCYNEGRQ 128 >gi|148652854|ref|YP_001279947.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571938|gb|ABQ93997.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 231 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + F G+ + A + + + +++D + G+ Sbjct: 1 MHKILIIEDNPDIVANVYAFFEPKGYQLDNAHNGPSGLTLAAENTY-DVILLDVMLPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ L V L +AG +GA+ +L+KPF+ L +R L Sbjct: 60 GTQLCKALRE-KLHNKTPVLMLTARDTLSDKVAGFDSGADDYLVKPFSLVELEVRVRALI 118 Query: 119 QMQKSK 124 + + + Sbjct: 119 RRHQGE 124 >gi|34498960|ref|NP_903175.1| two-component response regulator [Chromobacterium violaceum ATCC 12472] gi|34104809|gb|AAQ61166.1| probable two-component response regulator [Chromobacterium violaceum ATCC 12472] Length = 402 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 61/127 (48%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ S R + G+ AT+ EA E+C + +P+ +++D M + Sbjct: 18 TTILLVEDSATNRYFIEQFIQELGYRCASATNGVEAVEYC-RNQVPDLVLMDIIMPEMDG 76 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R++ V + +L + E +++G +AG + +L KP + + L + + Sbjct: 77 LQATTELRRLFGEHWVPIIFLTSLNELESVVSGLKAGGDDYLAKPVSFDLLSAKIHVFLR 136 Query: 120 MQKSKDE 126 + + +++ Sbjct: 137 IAQMQNQ 143 >gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|28871510|ref|NP_794129.1| DNA-binding response regulator ColR [Pseudomonas syringae pv. tomato str. DC3000] gi|66047297|ref|YP_237138.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|213970324|ref|ZP_03398454.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|257486388|ref|ZP_05640429.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625007|ref|ZP_06457961.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647066|ref|ZP_06478409.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. aesculi str. 2250] gi|289677749|ref|ZP_06498639.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] gi|298488561|ref|ZP_07006591.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385476|ref|ZP_07233894.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato Max13] gi|302062994|ref|ZP_07254535.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato K40] gi|302135278|ref|ZP_07261268.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302189741|ref|ZP_07266414.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] gi|28854761|gb|AAO57824.1| DNA-binding response regulator ColR [Pseudomonas syringae pv. tomato str. DC3000] gi|63258004|gb|AAY39100.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|213924996|gb|EEB58561.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|298156902|gb|EFH97992.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322421|gb|EFW78514.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330111|gb|EFW86098.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330868739|gb|EGH03448.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877907|gb|EGH12056.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330888541|gb|EGH21202.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. mori str. 301020] gi|330895192|gb|EGH27530.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943745|gb|EGH46029.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330950189|gb|EGH50449.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] gi|330966157|gb|EGH66417.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|330973353|gb|EGH73419.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] gi|330989414|gb|EGH87517.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009877|gb|EGH89933.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331017964|gb|EGH98020.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 227 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119 Query: 121 QK 122 + Sbjct: 120 AQ 121 >gi|29348458|ref|NP_811961.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340362|gb|AAO78155.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1376 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + ++K F+D F V ++ E ++ +P+ +V D M + Sbjct: 1110 LLIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQAL-NRIPDIIVSDIMMPVMDGIT 1167 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 +++ + + V L + + G GA+S+L KPF+ LR + L Sbjct: 1168 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLDSR 1227 Query: 121 QKSKDENQF 129 +K + Q Sbjct: 1228 KKLIAQFQQ 1236 >gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ + GF EA EA + + +V+D M + Sbjct: 1 MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + + + G G + +L KPF+ L +R L + Sbjct: 60 GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 226 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 2/131 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+++ + + G+ V +A E E + +++D + + Sbjct: 3 QTILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETG-RFDLILLDVMLPKLNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ + V + L ++G +GAN ++ KPF E L +R + Sbjct: 62 -TEVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNT 120 Query: 122 KSKDENQFLDA 132 + L A Sbjct: 121 APLSSTEVLSA 131 >gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 237 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ + +A + E + +++D + + Sbjct: 1 MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSED-FDAILLDLMLPDLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + + ++G GA+ +++KPF E L +R + + Sbjct: 60 GL-EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118 Query: 121 QKSKD 125 K + Sbjct: 119 VKIEK 123 >gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13] Length = 223 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + +V + G+ A + E KE + +++D + + Sbjct: 1 MANILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKF-KENHWDLVLLDVMLPELS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R T V L ++G GAN ++ KPF E L +R + Sbjct: 60 GLEVLRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRT 119 Query: 121 QKSKDE 126 +S E Sbjct: 120 VQSGTE 125 >gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ + + + F G+ V + E + +++D + G+ Sbjct: 1 MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEAL-EGDYDLVLLDIMLPGI 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +D+ V L + + + + G GA+ ++ KPF+ E L +R + Sbjct: 60 DGF-EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALR 118 Query: 120 MQK 122 +K Sbjct: 119 KKK 121 >gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 236 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVL 60 ++L+V+ +R+ G+ V EA + A + E ++D + G+ Sbjct: 3 KTILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPGID 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ + + L + G GA+ ++ KPF+ L + L Sbjct: 63 GFAVCRELRQKSKT--LGIIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDALY 120 Query: 119 QMQKSKD 125 + + Sbjct: 121 RRLNLEA 127 >gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC 33656] gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC 33656] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + GF V E + ++D + G+ Sbjct: 1 MSRILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAED-FDLFILDLMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKRIREK---KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHL 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|228919441|ref|ZP_04082806.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840228|gb|EEM85504.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 223 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIE-QKEFDIILLDVMMPSMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +K+ + Sbjct: 119 SRKASKK 125 >gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ + + GF V E E E + +++D + + Sbjct: 4 RILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPW-DLILLDVMLPSLNGM 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + + G GA+ +++KPF E L +R L + Sbjct: 63 EVCRRIRA---AKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119 Query: 121 QKSKDENQFL 130 + Q L Sbjct: 120 VHPESGGQVL 129 >gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 225 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D +R++ ++ G+ VF A EA E + V+D M + Sbjct: 1 MIHILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARL-AEEQIHLAVVDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R D V L + G G + +L KPF + L F ++ L Sbjct: 60 GYQLCEEIR---RYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALL 116 Query: 119 QMQKSKDENQ 128 + + + ++ Sbjct: 117 RRYQMVNADK 126 >gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] Length = 234 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGV 59 M +L+ + +R+ G+ V + +A + E+ E + ++D M G+ Sbjct: 1 MKKVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGAFDVALLDIMMPGI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + + + L + I+ +GA+ ++ KPF+ L + + + Sbjct: 61 DGMQVCKKIREKNSGMGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 238 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+VD +R F G+ V A+ A E + P+ +V+D M + Sbjct: 12 RSLLVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADP-PDAIVLDVMMPELDG 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R +G V L +AG AGA+ +L+KPF L MR L + Sbjct: 71 VEVCRRLRGVGDHTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRS 130 Query: 122 K 122 + Sbjct: 131 E 131 >gi|209547395|ref|YP_002279313.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538639|gb|ACI58573.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 2099 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD + G V AT+ EA + E +++D M G+ + Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + + L + AGA+ +L KP N E L A+R Sbjct: 2040 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099 Score = 91.4 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 15/139 (10%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ +V L D GF V A +A ++ P + +D + +L Sbjct: 1713 LLVVEDDAHYARVLVDLARDSGFKVLVAMRGSDALSLA-QDYRPAAISLDIFLPDMLGWT 1771 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 ++ ++Q P + V + E G GA +F+ KP E L ++ Sbjct: 1772 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAYA 1828 Query: 119 QMQKSK------DENQFLD 131 Q ++ +E + L Sbjct: 1829 QPRRKHLLLVEDNEAERLS 1847 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLV+ + R L + S EA ++ P+ +V+D S+ + Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALAALRQDP-PDCVVLDLSLPDMSG 1891 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 F + +R +V V + A + A S ++K + E L Sbjct: 1892 FDVLEQIRDDAEIGEVPVVVFTGRELSPEEDATLHSMARSVVVKGVESPERLLD 1945 >gi|38234503|ref|NP_940270.1| putative two component system response regulator protein [Corynebacterium diphtheriae NCTC 13129] gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein [Corynebacterium diphtheriae] Length = 236 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + GF V A S EA E + P+ ++D M G+ Sbjct: 9 TRVLVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKA-RSFQPDAFILDVMMPGMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + G + V YL + E I G GA+ ++ KPF+ E + +R + + Sbjct: 68 YELLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126 >gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 248 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 23 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 81 GW-QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 Query: 121 Q 121 Sbjct: 140 H 140 >gi|311696852|gb|ADP99725.1| two-component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 241 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G V A +A + ++ + +V+D M G Sbjct: 6 TILVVDDHRDIRDLVGRYLQEHGLRVLLA-DGGDAMKRQLRQHSVDLVVLDIMMPGDDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + T++ V L + I G GA+ +L KPFN L ++ + + Sbjct: 65 TLC-RYLREHTELPVILLTAMSEETDRIVGLEMGADDYLTKPFNPRELLARIKAVLRRTT 123 Query: 123 SKDENQ 128 + + Sbjct: 124 ALPPQR 129 >gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896] Length = 228 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + G+ V + + +A EF + + + LV+D M G+ Sbjct: 1 MKHILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEV-DLLVLDIMMRGMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR ++V + ++ + I G GA+ +L KPF+ L ++ + Sbjct: 60 GLDLCKKVRM---TSEVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNIL 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRTNA 121 >gi|284040445|ref|YP_003390375.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283819738|gb|ADB41576.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 235 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V AT +A E +P +++D M + Sbjct: 12 RVLVVDDDADILEMLEYNLSKEGYDVRTATDGRKALEVART-YMPELVLLDIMMPHLDGI 70 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +P ++ YL + +A GA+ ++ KP L + L + Sbjct: 71 EAGRQLRDIPELRQTYILYLTARSEEYSEVAAFDVGADDYITKPIKPRALMSRINALFRR 130 Query: 121 QKSKD 125 + K Sbjct: 131 EAQKA 135 >gi|300776266|ref|ZP_07086124.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300501776|gb|EFK32916.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 234 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + K+ F + F V A + + + +V D + Sbjct: 1 MPHILLVEDDDRLSKLIAKGFQEAQFEVTVAYDGNSGMKLALQNH-FDLIVTDIVLPKKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LEF ++ + D+ V L + + G AGA+ +L KPF L ++ L Sbjct: 60 GLEFCNEIKALK--PDLPVIMLTALGTTDDKLEGFDAGADDYLTKPFEMRELVARIKVLL 117 Query: 119 QMQKSKDENQFL 130 + + + L Sbjct: 118 KRFSQQRHQKVL 129 >gi|162456898|ref|YP_001619265.1| response regulator [Sorangium cellulosum 'So ce 56'] gi|161167480|emb|CAN98785.1| response regulator [Sorangium cellulosum 'So ce 56'] Length = 270 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + GF V A+ + ++ P+ +++D + Sbjct: 45 KKILIIEDEPHIVLGLTDALEFEGFSVASASKGKDGV-LLARQEKPDAILLDLMLPDTNG 103 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L I G AGA+ ++ KPF+ L +R L + Sbjct: 104 FKVCEDLRRWDAF--VPIIMLTARGQEIDKIRGLDAGADDYVTKPFSVGELIARLRALFR 161 Query: 120 MQKSKDE 126 E Sbjct: 162 RAARPAE 168 >gi|293556317|ref|ZP_06674900.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291601517|gb|EFF31786.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] Length = 160 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATH-IELIITDVMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ V + + DFE G + GA+ ++ KP + + + L + Sbjct: 60 GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119 Query: 121 QK 122 K Sbjct: 120 SK 121 >gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603] gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603] Length = 225 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHTIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1] gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1] Length = 223 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V A + + + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDE 126 +E Sbjct: 118 EPEE 121 >gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 248 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 23 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 81 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 Query: 121 Q 121 Sbjct: 140 H 140 >gi|260770826|ref|ZP_05879755.1| response regulator [Vibrio furnissii CIP 102972] gi|260614063|gb|EEX39253.1| response regulator [Vibrio furnissii CIP 102972] Length = 228 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + + + GF V EA + +++D M + Sbjct: 1 MAHILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAV--NDSVDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GM-ETLKKLREKWQTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKDENQ 128 + +++ Sbjct: 118 TGNHTQSK 125 >gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ V EA EA E E + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFE-EYEVHLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 MESR 120 >gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|217978617|ref|YP_002362764.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2] gi|217503993|gb|ACK51402.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2] Length = 1792 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + G V A++ EA E +++D M + Sbjct: 1672 RTVLLVDDDARNIFALSGVLERRGMSVLTASNGGEAIESLRARPEIEIVLMDVMMPDMDG 1731 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + VR P + + L AGA+ +L KP +RE L +R Sbjct: 1732 YETMQRVRTEPAFRRLPIVALTARAMKGDREKCIDAGASDYLAKPVDREQLLAVLRMWLH 1791 Query: 120 M 120 Sbjct: 1792 R 1792 Score = 45.6 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 5/79 (6%) Query: 41 CEKELLPNYLVIDESM--EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGAN 98 P ++++ + +A ++Q + V E GA Sbjct: 1443 LADLYRPAAILLNLGLADPPGWNVLAQLKQSIATRHIPVA---ATGAIEDRHYALSRGAF 1499 Query: 99 SFLLKPFNRETLRFAMREL 117 FL P L+ A+ L Sbjct: 1500 DFLEAPVRPGDLKAALMRL 1518 >gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 220 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + R G+ V AT + F + +++D + V Sbjct: 2 RVLIVEDEPNLGRQLRATLEGAGYAVDLATDGEDG-HFLGSTESYDAIILDLGLPEVDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G D V L + +AG AGA+ +L KPF E L +R L + Sbjct: 61 TVLDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 123 SKDENQFLD 131 ++ + Sbjct: 121 GNASSELIA 129 >gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans 621H] gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans 621H] Length = 240 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ + + + G+ V A A + P+ +V+D + G L+ Sbjct: 13 VLLVEDDPALLLMTCYNLEQRGYRVETAEDGEAAL-LVLETARPDAVVLDWMLPGLSGLD 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P DV V L + I G GA+ +L+KP + +TL +R L + Sbjct: 72 VCRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADDYLMKPCSIDTLDARLRALLRRH 131 Query: 122 KS 123 +S Sbjct: 132 QS 133 >gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W] gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W] gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] Length = 1468 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD ++ G V A + + E + + +++D M + Sbjct: 1348 RKVLVVDDDVRNVFALTNILELHGMQVLYAENGRKGIEVLSRNEDVDLVLMDIMMPEMDG 1407 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R+MP D+ + + + AGA+ ++ KP + + L +++ Sbjct: 1408 YAATAAIRKMPRFADLPIIAVTAKAMQGDRDKTLAAGASDYVTKPVDAQELLSRIQQWM 1466 >gi|229587824|ref|YP_002869943.1| osmolarity response regulator [Pseudomonas fluorescens SBW25] gi|229359690|emb|CAY46538.1| DNA-binding response regulator [Pseudomonas fluorescens SBW25] Length = 246 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + FN G+ + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQ-MDRLLGREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 TACKRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 Sbjct: 131 L 131 >gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268] gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268] Length = 233 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ G+ VF+A + E + +E + +++D M G+ Sbjct: 5 NILVVDDEKEIAELVEIYLVSDGYKVFKAYNAEEGLQILSQEE-IHLVLLDVMMPGMNGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +++ V L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 EMCRKIRES---SNIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120 Query: 121 QKSKDEN 127 + N Sbjct: 121 YTQLNPN 127 >gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135] gi|198270906|gb|EDY95176.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135] Length = 1325 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + + +V + + + V A + E + +E P+ ++ D M + Sbjct: 1067 QTILLVEDNEDMLQVLVDMLSPL-YKVKIAMNGQEGLDKALEES-PDLIISDVMMPVMSG 1124 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + V L + + G + GA+ ++ KPFN + L + + + Sbjct: 1125 TEMCMKLKTNFNSSHIPVILLTALTSDDSKLKGVQCGADDYVEKPFNHKILLGKIANILR 1184 Query: 120 MQKSKDENQFLD 131 +K + +D Sbjct: 1185 SRKLLVQKFQID 1196 >gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 233 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 10/126 (7%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M + +L+VD + V + + VF A + EA E + +++++D + Sbjct: 1 MKTDGRNILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNS-IDFVILDLML 59 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R + V + L +VD I G GA+ +++KPF+ + L + Sbjct: 60 PDLSGEEICKKIRIE---SQVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARV 116 Query: 115 RELPQM 120 + + Sbjct: 117 NAIWRR 122 >gi|67924947|ref|ZP_00518336.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67853208|gb|EAM48578.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 122 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D S R++ L + GF V A EA E K L P+ +++D M + Sbjct: 1 MPTILVADDSPAQRELIAGLLKENGFSVATAIDGAEALEKL-KSLAPDLIILDVVMPNLN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + V + G + GA+++++KPF + L +++L Sbjct: 60 GYQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIVKPFPHDELLGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|330962179|gb|EGH62439.1| sensory box protein/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 705 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD VR + L + + A S A E E P+ +++D M G+ Sbjct: 7 TILIVDDDVHVRDLLEVLLQNQNYRTLTAESGEVALEMVELH-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQLKANKSTANIPIIMLSALDQQSARLSGLEAGAEEYLNKPVDSSELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|329938393|ref|ZP_08287818.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329302366|gb|EGG46257.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 289 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 9/123 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL++ V FGF V A + E + +++D + + Sbjct: 2 RVLLIEDDDRVAGPLTEGLGRFGFTVDRARTGAEGLAA----GACDMVLLDLGLPDMDGI 57 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + + D + G GA+ ++ KPF L +R + + Sbjct: 58 EVCRALRLR---SQVPIIMITARSDEVDRVLGLEIGADDYVSKPFGVRELIARIRAVTRR 114 Query: 121 QKS 123 ++ Sbjct: 115 SQA 117 >gi|329957698|ref|ZP_08298173.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522575|gb|EGF49684.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1347 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R+ + + F + EA + +A E + + + ++ D M + Sbjct: 1100 TILIVEDNEELRQYLSNGLSVQ-FNLIEAENGQKALELLKDNDV-DLILSDVMMPIMDGV 1157 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + VY L +VD + + G + GA+ ++ KPF+ E L + + + Sbjct: 1158 KLCKLIKQNLRTCHIPVYLLSAKVDIKYQLKGLQVGADDYIPKPFSMEVLVAKILNMLRT 1217 Query: 121 Q 121 + Sbjct: 1218 R 1218 >gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 238 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++L + ++ R V A + A P+ L++D + G+ Sbjct: 13 NIVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAE-PDLLILDVMLPGMNGL 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +D+ + L + ++ G GA+ ++ KP++ L +R L + Sbjct: 72 TVCRTIRAS---SDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLLRR 128 Query: 121 QKSKD 125 + Sbjct: 129 TNAAK 133 >gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+++ + + G+ V + E E E +++D + + Sbjct: 4 RVLIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEW-GLILLDVMLPSLNGM 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + + + G GA+ +++KPF E L +R L + Sbjct: 63 EVCRRIRAV---KQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119 Query: 121 QKSKDENQFL 130 + E + L Sbjct: 120 VHAPAEERLL 129 >gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 240 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + GF V +A EA E+ E + L++D M G+ Sbjct: 10 MQTILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGN-QVDLLIVDVMMPGLD 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 69 GIRTTLKVRE-NSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRR 127 >gi|237727119|ref|ZP_04557600.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1467 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + + + + D F ++ A E + P+ +V D+ M + Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + V L + + E GAN++++KPF+++ L + +L Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 Query: 121 QKSKDE 126 +K E Sbjct: 1330 RKLFRE 1335 >gi|197105366|ref|YP_002130743.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196478786|gb|ACG78314.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 249 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R V G+ V A E E + + +V+D + G Sbjct: 17 RILMVDDDPGIRDVVSDFLGRHGYKVETAADAPE-MERVLERGPVDLIVLDVMLPGEDGL 75 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + I G GA+ +L KP N L +R + + + Sbjct: 76 AICRRLTTADNAPPIIMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARVRAVLRRAE 135 Query: 123 SK 124 + Sbjct: 136 QR 137 >gi|162453232|ref|YP_001615599.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161163814|emb|CAN95119.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 376 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + R + + D G+ V A + E + E P+ +++D M G+ F Sbjct: 9 RVLVVDDNEQNRALAQATLEDDGYEVVLAVTGEEGIQQFELHK-PDCVLLDVRMPGMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R +P G + +L D + + RAG + FL KP L ++ ++ Sbjct: 68 AVCSRIRGLPEGASTPIVFLTALRDVDTFDSALRAGGDDFLTKPIRPSELLVRVQAALRL 127 Query: 121 QKSKDENQ 128 ++ E + Sbjct: 128 RRLGAELR 135 >gi|146340880|ref|YP_001205928.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146193686|emb|CAL77703.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains (modular protein) [Bradyrhizobium sp. ORS278] Length = 2117 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + G V AT+ EA + + +++D M + Sbjct: 1997 KTVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDLVQGNPEIAIVLMDIMMPQMDG 2056 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +RQ P+ + + L + AGA+ +L KP N E L A+R Sbjct: 2057 YQTIGVIRQSPIFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIRMWLH 2116 Query: 120 M 120 Sbjct: 2117 R 2117 Score = 91.0 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ +V L D GF V A+ EA E K+ P + +D + +L Sbjct: 1731 LLVVEDDPHYARVLIDLARDKGFKVLIASRGAEALELA-KQYQPAAISLDVFLPDMLGWT 1789 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ PL + V + E GA SF+ KP E + A+ ++ + Sbjct: 1790 VLSQLKHNPLTRHIPVQIIT---LDEDRQHALARGAFSFVSKPTTTEGVSAALTQIKEYA 1846 Query: 122 KSKDE 126 K + + Sbjct: 1847 KPRRK 1851 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 5/93 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+V+ + R R L + A + A + + +V+D + + Sbjct: 1851 KRLLIVEDNDAERMSIRQLLEHDDIEIVGADTGAAALDTLRSGPC-DCVVLDLRLPDMSG 1909 Query: 62 F--IAHVRQMPLGTDVFVYYLLME--VDFEKMI 90 F + +R V V E Sbjct: 1910 FDVLEQLRTDETLAGVPVVVFTGRELSAEEDAE 1942 >gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630] gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13 [Clostridium difficile] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + F V + +K+ +++D + + Sbjct: 1 MYKILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNY-QLIILDIMLPAMN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++ +V V L + ++G R GA+ +L KPF ++ L Sbjct: 60 GYDVLTEIRKL---NNVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLI 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|52079560|ref|YP_078351.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52784924|ref|YP_090753.1| hypothetical protein BLi01152 [Bacillus licheniformis ATCC 14580] gi|319646651|ref|ZP_08000880.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2] gi|52002771|gb|AAU22713.1| Two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52347426|gb|AAU40060.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317391239|gb|EFV72037.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2] Length = 224 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 8/129 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + + + + +A + EA + K + +++D M + Sbjct: 2 NVLLVDDENRMLDLLELYLEH--YSCTKAATGKEALDLI-KMRNFDLVILDIMMPEMDGW 58 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ T + V L + + ++ G GA+ +L KPF+ + L + + + Sbjct: 59 TVCKEIRRL---TSIPVIMLTAKNGQDDIVRGLNCGADDYLTKPFSEKVLLAKIEAVLRR 115 Query: 121 QKSKDENQF 129 + E +F Sbjct: 116 TRRFHEIRF 124 >gi|46579830|ref|YP_010638.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120602701|ref|YP_967101.1| Fis family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46449245|gb|AAS95897.1| sigma-54 dependent transcriptional regulator/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|120562930|gb|ABM28674.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris DP4] gi|311234165|gb|ADP87019.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris RCH1] Length = 459 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL++D R + R + D G+ V EA S E E E + +++D M G+ Sbjct: 1 MKHLLVIDDEPGHRLMVRAVMEDVGWHVVEAGSGEEGLELLVHE-QVHVVLLDMRMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + V L + + GA +L KP + E L + + + Sbjct: 60 GQETLARILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEH 119 Query: 121 QKSKDENQFL 130 ++ EN+ L Sbjct: 120 RRLVVENEEL 129 >gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 220 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL++ + + G+ V A E + V+D + + Sbjct: 2 RLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSEN-FDLAVLDLGLPRMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G+++ V L E IAG AGA+ +L+KPF+ L+ +R L + Sbjct: 61 EVLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSA 120 Query: 123 SKDEN 127 + + Sbjct: 121 GRAQM 125 >gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606] Length = 319 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|198276106|ref|ZP_03208637.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135] gi|198270918|gb|EDY95188.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135] Length = 1237 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL V+ + +R V + + D F + EA+S A E + + +V D M G+ F Sbjct: 985 LLFVEDNDDLRNVMKRILTDH-FDLTEASSGETALLQLE-DKKIDIIVSDIMMPGMNGFE 1042 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + V L + I G GA+ ++ KP N L + L + + Sbjct: 1043 LCKKIKERFETKHIPVILLTAKTSDMDRITGYEVGADGYICKPLNISVLLAKIENLLKKK 1102 Query: 122 K 122 + Sbjct: 1103 E 1103 >gi|187479256|ref|YP_787281.1| osmolarity two component response regulator [Bordetella avium 197N] gi|115423843|emb|CAJ50394.1| osmolarity two component response regulator [Bordetella avium 197N] Length = 233 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ N G+ A + P+ LV+D + G Sbjct: 6 TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASD-LASRITRYAPDLLVLDRMLPGGDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R G D+ V L + I G AGA+ +L KPF+ L + + + + Sbjct: 65 ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124 Query: 122 K 122 + Sbjct: 125 R 125 >gi|85059514|ref|YP_455216.1| putative two-component regulator protein [Sodalis glossinidius str. 'morsitans'] gi|84780034|dbj|BAE74811.1| putative two-component regulator protein [Sodalis glossinidius str. 'morsitans'] Length = 168 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D R+ R + G++V A + E E E + +++D M + + Sbjct: 2 KILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGVFMAE-EYYYDLILLDVMMPELNGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + D V +L + + I G GA+ +L+KPF+ L +R + Sbjct: 61 -EVMKTLDSLLDTPVIFLTAKSTVDDRIKGLELGADDYLVKPFSFAELLARIRTALRRGM 119 Query: 123 SKDENQFL 130 + + L Sbjct: 120 NGKREELL 127 >gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5] Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 11/137 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + + F V A R +E + +++D + GV Sbjct: 3 KKILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEED-FDLIILDLMLPGVDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VR + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 62 FEICRQVRDQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 118 Query: 120 MQKSK-----DENQFLD 131 + +EN+ ++ Sbjct: 119 RYERLIGSNVEENEIIE 135 >gi|315920858|ref|ZP_07917098.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313694733|gb|EFS31568.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1352 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA E +K+ +P+ ++ D M Sbjct: 1086 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1143 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1144 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1203 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1204 NNLVNSRRLLQE 1215 >gi|298675227|ref|YP_003726977.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] gi|298288215|gb|ADI74181.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] Length = 352 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + ++ + A S +A + +E LP+ +++D M + Sbjct: 228 KILIVDDEPDIPELIKLSLSNEPYDFIVAYSGEQAVDMTLQE-LPDLILLDIMMPDMDGY 286 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + D+ + + + E + G G + ++ KPF+ L ++ + + Sbjct: 287 EVVEELNKDKSTRDIAIIMVSAKTRVEDKLKGMELGIDDYISKPFDERELNARIKMVMKR 346 >gi|295681071|ref|YP_003609645.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295440966|gb|ADG20134.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 246 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + + R E P+ +V+D + G Sbjct: 7 VLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRATLE-NGAPDLIVLDLMLPGEDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V + L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRELRA-GKFRAVPILMLTARSEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1467 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + + + + D F ++ A E + P+ +V D+ M + Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + V L + + E GAN++++KPF+++ L + +L Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 Query: 121 QKSKDE 126 +K E Sbjct: 1330 RKLFRE 1335 >gi|262405544|ref|ZP_06082094.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294644578|ref|ZP_06722332.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294809610|ref|ZP_06768303.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262356419|gb|EEZ05509.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292640131|gb|EFF58395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294443222|gb|EFG11996.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1352 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA E +K+ +P+ ++ D M Sbjct: 1086 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1143 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1144 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1203 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1204 NNLVNSRRLLQE 1215 >gi|260172565|ref|ZP_05758977.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1324 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA E +K+ +P+ ++ D M Sbjct: 1058 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1115 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1116 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1175 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1176 NNLVNSRRLLQE 1187 >gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1467 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + + + + D F ++ A E + P+ +V D+ M + Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + V L + + E GAN++++KPF+++ L + +L Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 Query: 121 QKSKDE 126 +K E Sbjct: 1330 RKLFRE 1335 >gi|237720524|ref|ZP_04551005.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|293371540|ref|ZP_06617958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298480439|ref|ZP_06998636.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|299146986|ref|ZP_07040053.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|229450275|gb|EEO56066.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|292633488|gb|EFF52053.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298273260|gb|EFI14824.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298514871|gb|EFI38753.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1352 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA E +K+ +P+ ++ D M Sbjct: 1086 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1143 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1144 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1203 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1204 NNLVNSRRLLQE 1215 >gi|237716769|ref|ZP_04547250.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229442752|gb|EEO48543.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1344 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA E +K+ +P+ ++ D M Sbjct: 1078 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1135 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1136 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1195 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1196 NNLVNSRRLLQE 1207 >gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EAT+ EA + ++ + + ++D + G+ Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 120 Query: 119 QMQKSKDE 126 + + +E Sbjct: 121 RRIEVHEE 128 >gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] Length = 229 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDEN 127 + N Sbjct: 117 SRYERLSGN 125 >gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 227 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+++ + + + F V A+ + + L++D + G+ Sbjct: 2 RLLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEY-DLLLVDWMIPGISGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G DV + +L + E ++ G AGAN ++ KPF E L +R + + Sbjct: 61 EVCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRRRG 120 Query: 123 SKD 125 S+ Sbjct: 121 SES 123 >gi|160884022|ref|ZP_02065025.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483] gi|156110752|gb|EDO12497.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483] Length = 1352 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 2 DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 + L+V+ + ++++ +F F + V A+ EA E +K+ +P+ ++ D M Sbjct: 1086 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1143 Query: 57 EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + ++ + V L E I G + GA+ ++ KPFN L Sbjct: 1144 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1203 Query: 115 RELPQMQKSKDE 126 L ++ E Sbjct: 1204 NNLVNSRRLLQE 1215 >gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 252 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 L+VD + V F V A + +A +E+ P+ +V+D + G+ Sbjct: 18 RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALA-REIDPDVVVLDLGLPGMDGI 76 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +D +V L I G GA+ ++ KPF+ L +R + + Sbjct: 77 EVCRQLR---TFSDAYVVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 133 Query: 121 QK 122 + Sbjct: 134 PR 135 >gi|28868014|ref|NP_790633.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851250|gb|AAO54328.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|331018350|gb|EGH98406.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 254 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R F V A + ++ + +V+D + F Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQP-FDVVVLDVMLPDGDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R ++ V L + G GA+ +L KPF L + + + + Sbjct: 71 ELCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128 >gi|39996977|ref|NP_952928.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983865|gb|AAR35255.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505994|gb|ADI84717.1| winged-helix transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 238 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ + + G+ V S A E +++D + G+ F Sbjct: 8 ILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERL-TYDRFALIILDVMLPGIDGFT 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V + L D I G GA+ +L KPFN +R + + Sbjct: 67 VCERVRATDARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRR 123 >gi|299142597|ref|ZP_07035728.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] gi|298576032|gb|EFI47907.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] Length = 1340 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 10/132 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + +R +F F V +A E + +++P+ ++ D M + Sbjct: 1079 LLVVEDNPDIRTYIADVF-ANDFDVRQAADGQEGLQMAL-DIIPDMIISDVMMPNMDGNE 1136 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V++ + V + L + E G +GA+S+L KPF+ LR + L + + Sbjct: 1137 LCRKVKENVRTSHVPIILLTAKDGNEAKEEGYESGADSYLTKPFSSSLLRTRVHNLVEQR 1196 Query: 122 KSKDENQFLDAI 133 Q L A+ Sbjct: 1197 ------QRLLAV 1202 >gi|298483802|ref|ZP_07001975.1| one-component system sensor histidine kinase/response regulator [Bacteroides sp. D22] gi|298270096|gb|EFI11684.1| one-component system sensor histidine kinase/response regulator [Bacteroides sp. D22] Length = 1358 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LLLV+ + R + DF + + EA E +E PN ++ D M Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1163 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + V L + I GA+S++ KPFN + L + +L + Sbjct: 1164 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1223 Query: 120 MQKSKDEN 127 Q+ + + Sbjct: 1224 QQEKRKQE 1231 >gi|260771990|ref|ZP_05880907.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260612857|gb|EEX38059.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 240 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNLIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ + GF EA EA + + +V+D M + Sbjct: 10 MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISKN-IDLVVLDIMMPIMD 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + + + G G + +L KPF+ L +R L + Sbjct: 69 GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128 Query: 121 QK 122 K Sbjct: 129 YK 130 >gi|189466428|ref|ZP_03015213.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM 17393] gi|189434692|gb|EDV03677.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM 17393] Length = 1396 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ +R + +M + EA P+ ++ D M + Sbjct: 1135 RHVLVVEDDEEIRHYICRELGNDFYMTECC-NGKEALASILYHT-PDLIISDVMMPEMDG 1192 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + + L E + G GA+++L+KPF+ E LR + + + Sbjct: 1193 LTLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNIIR 1252 Query: 120 MQKSKD 125 ++ Sbjct: 1253 RREQLR 1258 >gi|121535346|ref|ZP_01667158.1| response regulator receiver modulated metal dependent phosphohydrolase [Thermosinus carboxydivorans Nor1] gi|121306038|gb|EAX46968.1| response regulator receiver modulated metal dependent phosphohydrolase [Thermosinus carboxydivorans Nor1] Length = 361 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ ++ L G+ V S E E P+ +++D + + F Sbjct: 6 KILVIEDDARSARLMEALLMPAGYEVQTVGSGAEGLAAIET-FKPHLVLLDIMLPDIDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ P G V V + D + G GA+ F++KP + L +R L ++ Sbjct: 65 EVLRRLKAEPAGQAVPVVMVTALADAKSRARGFELGADDFIIKPVEKIELYARVRSLLRI 124 Query: 121 Q----KSKDENQFLDA 132 + + +++NQ L A Sbjct: 125 KAYYDQLQEQNQRLAA 140 >gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + E + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTKQTI 127 >gi|17228665|ref|NP_485213.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130516|dbj|BAB73127.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 234 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLE 61 +LLV+ + + N ++V +A + E +++D + G+ Sbjct: 2 RVLLVEDEPDLGAAIKRTLNQQKYLVDWVMDGNDAWTYLENSSAQYTVVILDWMLPGISG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + E +AG AGA+ +L+KPF L +R L + Sbjct: 62 LELCKRLRYQGNPLPILMLTAKDRMEDKVAGLDAGADDYLVKPFGMVELLARLRALQRRS 121 Query: 122 KSKDENQF 129 Q Sbjct: 122 PHLQPQQL 129 >gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 7/128 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ + ++ GF S F ++ + + +++D + + Sbjct: 1 MKPRVLIVEDEPAIVDNIQYALETEGFATVCLVSGEPVLTFLARDTV-DLIILDIGLPDM 59 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R+ V +L D + G GA+ ++ KPF+ L +R + Sbjct: 60 SGMELCKEIRKS---HSTPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAV 116 Query: 118 PQMQKSKD 125 + +D Sbjct: 117 LRRTHVRD 124 >gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505] gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505] Length = 243 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 11/132 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDES 55 +LLV+ R + GF V EA A E E P + +++D Sbjct: 8 TRILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLM 67 Query: 56 ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + +R + V V L + I G GA+ ++ KP++ L Sbjct: 68 LPRLDGTGVCTRIR---RSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLAR 124 Query: 114 MRELPQMQKSKD 125 ++ + + ++ Sbjct: 125 LKAVLRRSRAAA 136 >gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5] Length = 234 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ ++++ G F A +A K + +V+D M + Sbjct: 13 MANILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDAL-MLLKNHPMDLMVLDIMMPHLD 71 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F R+M + + L + + G GA+ ++ KPF+ L L Sbjct: 72 GFSVCKMAREMSS---LPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALL 128 Query: 119 QMQKS 123 + S Sbjct: 129 RRSSS 133 >gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 233 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ + GF EA EA + + +V+D M + Sbjct: 10 MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + + + G G + +L KPF+ L +R L + Sbjct: 69 GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128 Query: 121 QK 122 K Sbjct: 129 YK 130 >gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621] gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621] gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|224540722|ref|ZP_03681261.1| hypothetical protein BACCELL_05636 [Bacteroides cellulosilyticus DSM 14838] gi|224517665|gb|EEF86770.1| hypothetical protein BACCELL_05636 [Bacteroides cellulosilyticus DSM 14838] Length = 1301 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLL + +R+ + + + V +A E +E+ P+ ++ D M E Sbjct: 1059 LLLAEDDKDMREYLMNSLSSE-YKVIGVPDGGKALEMA-REINPDIIISDIVMPVLEGDE 1116 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 ++ + + V L + E +I G AGAN +++KPF+ L+ +R + Q Sbjct: 1117 LCRILKSSVDTSHIPVILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1176 Query: 121 QKSKD 125 Q +D Sbjct: 1177 QHLRD 1181 >gi|187933115|ref|YP_001885875.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187721268|gb|ACD22489.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 230 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +L+VD + + + G+ +F+A +A + ++E + +++D M Sbjct: 1 MKNYNILVVDDDKTITEAIGVYLVNEGYKIFKAYDGIQALKVIDEED-IHLVILDIMMPN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ + + L + + I G GA+ ++ KPFN L + Sbjct: 60 MNGTRTTIKIREE-RQIPIIMLSAKSEDTDKILGLNLGADDYITKPFNPLELIARVNSQI 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|330957938|gb|EGH58198.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119 Query: 121 QK 122 + Sbjct: 120 AQ 121 >gi|310642323|ref|YP_003947081.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309247273|gb|ADO56840.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 42/119 (35%) Query: 8 DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVR 67 + +R GF V EA+ EA + ++D + G+ F R Sbjct: 2 EDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGFEVCRR 61 Query: 68 QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDE 126 + + +L +V + + GA+ + KPF+ L ++ L + E Sbjct: 62 IRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVNVHRE 120 >gi|301062173|ref|ZP_07202858.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300443726|gb|EFK07806.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 175 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +V K+ RHL ++V A + EA + E P+ +V D M + Sbjct: 54 TKILVVDDNLVVLKLLRHLLESQDYLVITAQNGVEALKLASTED-PDMVVTDYVMPEMDG 112 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +++ ++ + L + + E + G AGA+ +L KP R+ + L + Sbjct: 113 VALIKELKRRKETRNIPIMMLTAKDEEESELEGLDAGADDYLTKPIARKRFLARVARLLK 172 Query: 120 M 120 Sbjct: 173 R 173 >gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G++ ++++ EA E + + + +++D M + Sbjct: 5 KILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNV-HLIILDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 EACMKIREE-KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120 >gi|120405713|ref|YP_955542.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958531|gb|ABM15536.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 230 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + + R + G+ V A S EA + P+ +V+D + + Sbjct: 6 TRVLVIDDEPQILRALRINLSVRGYEVHTAASGAEALRMA-ADHKPDVVVLDLGLPDMTG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I + + V L D + AGA+ ++ KPF + +R + Sbjct: 65 -IEVLAGLRGWLSAPVIVLSARSDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRRG 123 Query: 122 KSKDE 126 + E Sbjct: 124 ATAAE 128 >gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V AT+ + + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDE 126 +E Sbjct: 118 EPEE 121 >gi|17230613|ref|NP_487161.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132216|dbj|BAB74820.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 382 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L++D V L ++ + + S EA P+ +++D M G+ Sbjct: 5 SILVIDDLPDNFDVIETLLSEQDYTLHYVASGQEAIASLNL-FQPDLILLDVMMPGMDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ MP V + + E + ++GA+ F+ KP N LR + + ++ Sbjct: 64 EVCQRIKAMPQWQPVPIIMVTALTAKEDLARCLQSGADDFISKPINALELRARLHSMLRI 123 Query: 121 QKSKDENQFLDAI 133 ++ D+ Q L + Sbjct: 124 KQQYDKIQTLSNL 136 >gi|319902883|ref|YP_004162611.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319417914|gb|ADV45025.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 1338 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R+ R+ ++ + + ++ A E LP+ ++ D M + Sbjct: 1083 KILIVEDNDELREYLRNTLSET-YHIQVCSNGKMALAIV-NEYLPHLIISDIMMPEMRGD 1140 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + + L + +I G + GA+ +++KPFN LR + L Sbjct: 1141 ELCQTLKNNIETSHIPIILLTALNADKNIIEGLQTGADEYIVKPFNIGILRATIANLLNN 1200 Query: 121 QKSKD 125 + Sbjct: 1201 RALLR 1205 >gi|212691048|ref|ZP_03299176.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855] gi|212666280|gb|EEB26852.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855] Length = 1350 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ + E+ + EA E P+ ++ D M + Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA++++ KPF+ E LR L + Sbjct: 1149 TLCHKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIRS 1208 Query: 120 MQKSKD 125 ++ ++ Sbjct: 1209 RERLRN 1214 >gi|150003331|ref|YP_001298075.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931755|gb|ABR38453.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1345 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +LLLV+ + +R F V A + EA + + ++ D M Sbjct: 1078 MKGYTLLLVEDNESMRSFIFERLEAL-FTVETAVNGQEALDILRSNH-IDLVISDIMMPV 1135 Query: 59 V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + E ++ + V +L + D E I G + GA +++ KPF+ L+ + Sbjct: 1136 MNGYELCKEIKADIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKTQILS 1195 Query: 117 LPQMQKSKDE 126 L ++ + E Sbjct: 1196 LLSNRRKERE 1205 >gi|154706185|ref|YP_001425412.1| two-component response regulator [Coxiella burnetii Dugway 5J108-111] gi|154355471|gb|ABS76933.1| two-component response regulator [Coxiella burnetii Dugway 5J108-111] Length = 245 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + GF A E + K+ + + +++D M G Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAV-DLVILDIMMPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQM + + + L + I G GA+ +L KPFN L +R + + + Sbjct: 66 LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123 >gi|86157482|ref|YP_464267.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773993|gb|ABC80830.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter dehalogenans 2CP-C] Length = 481 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +R+ R + G+ V EA S + E + E + + V D + G+ Sbjct: 7 SILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPV-DLGVFDIRLPGMDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R L D+ V + D ++ + GA F KP +R+ + ++R + Sbjct: 66 ALLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRD 125 Query: 123 SKDENQFLDA 132 + + Q L A Sbjct: 126 LEGKVQALSA 135 >gi|44888876|gb|AAS48175.1| DNA-binding response regulator [Pseudomonas fluorescens] Length = 246 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + FN G+ + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQ-MDRLLGREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 TACKRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|118579419|ref|YP_900669.1| two component sigma54 specific Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502129|gb|ABK98611.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 455 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D +R + + + G+ A + E + + ++++ D M + Sbjct: 5 KHILIIDDEENLRHMLSVMLSRQGYRADCAANGVEGLAAL-RGTVYDFILCDIRMPEMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ + +G+ + + + + + GA ++ KPF ++ + +R+ + Sbjct: 64 KAFLQAALRDQVGS--PIIMMSAYGTVDTAVECMKLGAYDYISKPFKKDEIVMVLRKAEE 121 Query: 120 MQKSKDENQFLDA 132 ++ KDEN L A Sbjct: 122 RERLKDENSRLRA 134 >gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CDC1551A] Length = 230 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 4 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 62 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 63 GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp. Tu6071] gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp. Tu6071] Length = 2013 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + G V A + E E E+ +++D M + Sbjct: 1893 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1952 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+MP + + L + +GA+ ++ KP + + L A+ + + Sbjct: 1953 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLRT 2012 Query: 121 Q 121 + Sbjct: 2013 K 2013 >gi|310642055|ref|YP_003946813.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309247005|gb|ADO56572.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 235 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE-AREFCEKELLPNYLVIDESME 57 M+ +L+V+ +RK+ G+ A + E ++ P+ +++D + Sbjct: 1 MNKPFILVVEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSRQ--PDLMILDLGLP 58 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++++ +++ + + + I AGA+ +L KPF+ E L +R Sbjct: 59 DMDGV-DIIKKLREWSNMPIIVVSARSEDRDKIDALDAGADDYLTKPFSVEELLARLRVS 117 Query: 118 PQMQK 122 + + Sbjct: 118 LRRIR 122 >gi|284051622|ref|ZP_06381832.1| response regulator receiver Signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291570873|dbj|BAI93145.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 369 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +R+ L F V A + + K LP+ ++ D M Sbjct: 1 MAKVLVIEDEETIRENLVELLEIEDFDVISAENGKLGVQQAHKH-LPDLILCDVMMPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + +L + D + + G GA+ +L KP + E L A+ Sbjct: 60 GYGVLKELRSHMETATIPFIFLTAKADRDDLREGMNLGADDYLTKPCSMEELLTAIAIRL 119 Query: 119 QMQKSKDENQFLD 131 + Q + + Sbjct: 120 EKQSLIKQQSEIQ 132 >gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHTIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|225851028|ref|YP_002731262.1| response regulator receiver modulated metal dependent phosphohydrolase [Persephonella marina EX-H1] gi|225645278|gb|ACO03464.1| response regulator receiver modulated metal dependent phosphohydrolase [Persephonella marina EX-H1] Length = 354 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD R + R +GF V E + EA + E + +++D M + F Sbjct: 8 TILIVDDDPQNRMLLRFFCKKWGFDVVECKNGAEAVKEA-NEKDIDIILMDLMMPKLDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L D E I G GA+ F KP N L+ ++ ++ Sbjct: 67 SALEVLKNNEKTKYIPVIILTAAEDTESRIKGIELGADDFFTKPINIHELKLRLKNSLKL 126 Query: 121 Q 121 + Sbjct: 127 K 127 >gi|119488955|ref|ZP_01621890.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119454911|gb|EAW36054.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 262 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC--EAREFCEKELLPNYLVIDESMEG 58 M +L++D + ++ G+ V +A +A + L + Sbjct: 1 MPRILVIDDDPAIAELVAINLEMAGYEVSQAEDGIKGQAL-ALQLLPDLIILDLMLPKVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +D+ + L + + G +GA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTSDIPIVMLTALGQTQNKVEGFNSGADDYLTKPFELEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] Length = 228 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+++ V + R + G+ A + ++ D + + Sbjct: 1 MYSILIIEDEQRVADLLRVGLEENGYNCLVAYDGAMGLRMFRANT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L + + G AGA+ +++KPF+ L +R L + Sbjct: 60 GFELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKR 119 Query: 121 Q 121 + Sbjct: 120 K 120 >gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241] gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293] gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI] gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241] gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293] gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + GF V +A EA E + + N +++D M G+ Sbjct: 1 MQKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEV-NLMIVDVMMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRTTLKVRE-TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118 >gi|260776785|ref|ZP_05885679.1| chemotaxis regulator CheY [Vibrio coralliilyticus ATCC BAA-450] gi|260606451|gb|EEX32725.1| chemotaxis regulator CheY [Vibrio coralliilyticus ATCC BAA-450] Length = 119 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A +A + ++ D +M + Sbjct: 1 MTKILAVDDSVSIRQMVSHTLRDAGYEVETANDGRDALNKVASSK-FDVVISDVNMPNMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R P V + L E EK G AGA +L+KPFN ETL ++ + Sbjct: 60 GFELVKALRDKPQYKFVPILMLTTETSTEKKQQGKSAGATGWLVKPFNPETLLKTLKRVI 119 >gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLLV+ +R + G V A S EA K + P+ +V+D + GV Sbjct: 1 MPSLLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATY-KTVRPDLIVLDVMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRQIRRTE---QLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVL 116 Query: 119 QMQKSK 124 + + + Sbjct: 117 RRGERE 122 >gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EAT+ EA + ++ + + ++D + G+ Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 117 Query: 119 QMQKSKDE 126 + + +E Sbjct: 118 RRIEVHEE 125 >gi|149189237|ref|ZP_01867524.1| osmolarity response regulator [Vibrio shilonii AK1] gi|148836991|gb|EDL53941.1| osmolarity response regulator [Vibrio shilonii AK1] Length = 239 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124 Query: 123 SKD 125 + Sbjct: 125 IEA 127 >gi|186477531|ref|YP_001859001.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184193990|gb|ACC71955.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 245 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +VR + G+ + E+E P+ +V+D M Sbjct: 5 VLIVDDDPVVRDLLCRFLQSNGYDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V ++ I G GA+ +L KPF+ L ++ + + + Sbjct: 64 ALTALRAAGDDIPVIFVTARGTVADRIIGLSLGADDYLTKPFDPRELLARIQTVLRRR 121 >gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 228 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ +A + EA + +++D M + Sbjct: 1 MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATNPGIDLMILDIMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++ + + V + + + I G GA+ ++ KPFN + ++ L + Sbjct: 60 G-IEVIKAVRKDSQVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDENQ 128 + + N+ Sbjct: 119 SQQQVTNE 126 >gi|26986989|ref|NP_742414.1| osmolarity response regulator [Pseudomonas putida KT2440] gi|148545517|ref|YP_001265619.1| osmolarity response regulator [Pseudomonas putida F1] gi|24981604|gb|AAN65878.1|AE016215_13 DNA-binding response regulator OmpR [Pseudomonas putida KT2440] gi|148509575|gb|ABQ76435.1| Two-component response regulator OmpR [Pseudomonas putida F1] Length = 246 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ + + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQ-MDRLLQREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACKRLRQQNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129 >gi|301059863|ref|ZP_07200754.1| putative Nitrogen assimilation regulatory protein [delta proteobacterium NaphS2] gi|300446013|gb|EFK09887.1| putative Nitrogen assimilation regulatory protein [delta proteobacterium NaphS2] Length = 480 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L++D +R L + G+ V A S + E P+ +++D + G+ Sbjct: 1 MSTILIIDDDDQLRASFEKLLKEEGYRVETAPSGETGLKRIEALP-PDLVILDMRLPGIN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R L + V + E I + GA ++LKPF+ + +R+ Sbjct: 60 GLETFKRINALDPKLPVIIMTAFGTTETAIEATKMGAFDYILKPFDIPEMLDVIRKALDA 119 Query: 121 QK 122 + Sbjct: 120 AR 121 >gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 240 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + R GF V EA + +A KE P+ +++D + G+ + Sbjct: 15 SILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEP-PDAMILDVMLPGMDGY 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +GT+ V +L E + G G + ++ KPF+ E + +R + + Sbjct: 74 TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 123 SKD 125 D Sbjct: 134 KSD 136 >gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 235 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + V + ++V+E S A E L P+ +++D + + Sbjct: 4 TKILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFE-NLQPDLIILDLMLPDLSG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ +D+ + L + + ++ G GA+ +L+KPF+ L + L + Sbjct: 63 EDVCKTIRKK---SDIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLR 119 Query: 120 MQKS 123 KS Sbjct: 120 RSKS 123 >gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EAT+ EA + ++ + + ++D + G+ Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 120 Query: 119 QMQKSKDE 126 + + +E Sbjct: 121 RRIEVHEE 128 >gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905] gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R + + N+ F A S EA + +E + +++D M Sbjct: 1 MTTVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREK-IDLVLLDVMMPHED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R M ++V + +L + + G G + +++KPF + L + + Sbjct: 60 GFVVCQSIRAM---SNVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVL 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRSGA 121 >gi|94264857|ref|ZP_01288632.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93454678|gb|EAT04943.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 833 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D ++RK+ +G+ A A E ++ P +ID M G+ Sbjct: 1 MK-ILVADDDPVIRKMLTTQLKGWGYQPLTAVDGQAAWEIMQQPDAPPLALIDWMMPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ P + ++ L + +I G AGA++++ KP++ L +R Sbjct: 60 GLTLCRRIREQPGPSAPYLIMLTTKSTPADVINGLEAGADAYITKPYHATELHARIRVGI 119 Query: 119 QMQKSK 124 + + + Sbjct: 120 RNIEQR 125 Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFG---FMVFEATSVCEAREFCEKELL-PNYLVIDESM 56 M +LL++ + RH + F + A S+ A E + P+ +++D ++ Sbjct: 146 MPLVLLIEDDPGETLLIRHQLTERNVDAFALHSADSMAAATRLLTGEGVVPDVVILDLNL 205 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + I V + D + L + E AGA+ FL K + TLR A+R Sbjct: 206 PDSVG-IRTVERCRSLCDSPIVVLSGNDEPEARRLALEAGADDFLAKGGDGPTLRRALRY 264 Query: 117 LPQMQKSKDENQFLDAI 133 + + + A+ Sbjct: 265 AIIRHRRDSDMRLAAAV 281 >gi|282859444|ref|ZP_06268549.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] gi|282587672|gb|EFB92872.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] Length = 230 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G++V A S EA N L++D ME + F Sbjct: 7 KILVVDDEKDLCEILKFNLEAEGYIVDTANSGEEALTM--DISKYNLLMLDVMMEEISGF 64 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ + +L +I G + GA+ ++ KPF+ + ++ + + Sbjct: 65 ALAKKLKDDIETKDIPIIFLTARTTENDIITGLKLGADDYISKPFSIREVILRIKVVLRR 124 Query: 121 QKSKDENQ 128 + + + Sbjct: 125 SYDEKQPE 132 >gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + E + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|213971081|ref|ZP_03399201.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301384196|ref|ZP_07232614.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060880|ref|ZP_07252421.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|302132855|ref|ZP_07258845.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924189|gb|EEB57764.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] Length = 254 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R F V A + ++ + +V+D + F Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQP-FDVVVLDVMLPDGDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R ++ V L + G GA+ +L KPF L + + + + Sbjct: 71 ELCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128 >gi|77918660|ref|YP_356475.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544743|gb|ABA88305.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM 2380] Length = 734 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--I 63 +VD +R + R GF V E+ E K + P+ +++D M + F Sbjct: 14 IVDDDPAMRLLTRATLEQAGFSVIESADGSEGVSLFRK-MRPDLVLLDVIMPQMDGFNVC 72 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R++P G ++ + L D E + AGA F+ KP N LR+ + + + + Sbjct: 73 RLLRKLPEGKEIPIIMLTGMDDVESVRKAFDAGATDFIGKPINWLLLRYRVMHMLRSARL 132 Query: 124 KDENQFLDA 132 ++ + A Sbjct: 133 CEDLRVSQA 141 >gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L] gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + E + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|83956294|ref|ZP_00964735.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1] gi|83839515|gb|EAP78696.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1] Length = 239 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R G A S E + + +V+D M G Sbjct: 7 ILVVDDHDEIRNSVSSYLERNGMRTSVAESAAE-MDAQRARHSFDLIVLDVMMPGEDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R V L + + I G GA+ +L KPFN L +R + + + Sbjct: 66 ACKRLRQE-CGTPVLMLTALGEDDDRIEGLEGGADDYLSKPFNPRELLARIRAIMRRSE 123 >gi|332519639|ref|ZP_08396103.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332044198|gb|EGI80392.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 234 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V R + V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLRDYLMMNDYEVVHAKNGMEGFEKFKKDD-FDLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F DV + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNADVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124 Query: 122 KSK 124 ++ Sbjct: 125 ATE 127 >gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 233 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E EK + + +V+D M + Sbjct: 5 TILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEV-HLVVLDIMMPKIDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKIREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 234 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + + G+ VF+A + E E EKE + ++D M + Sbjct: 5 SILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIEKEK-IHLAIVDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D V L + + I G GA+ ++ KPFN L + + Sbjct: 64 TMVMKLREQH-DFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRR 120 >gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614] gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + + GF V A EA + E E + +++D + Sbjct: 2 RVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAE-ETSYDVILLDVMLPVLNGY 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + + L + I G GA+ ++ KPF+ + L +R L + Sbjct: 61 EVCRRLREREVW--TPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRR 118 >gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 222 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R + + F A K + +++D + + Sbjct: 1 MAKVLVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMF-KNNSFDIVLLDVMLPDMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + V + + + G GA+ +++KPF+ + ++ + Sbjct: 60 GWNVLKTIRESSK---IPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAIL 116 Query: 119 QMQK 122 K Sbjct: 117 SRSK 120 >gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [uncultured Desulfobacterium sp.] Length = 242 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 54/120 (45%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ R+ G+ V A S EA + E + +V+D + G + Sbjct: 16 RILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEP-FDLIVLDLMLPGIGGI 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + ++ + L + + +I+G A+ ++ KPF+ + L + + + Sbjct: 75 DVAKRLRSVHNTINIPIIMLTAKSEETDIISGLTL-ADDYVTKPFSPKILSARISAILRR 133 >gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|282880384|ref|ZP_06289095.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305740|gb|EFA97789.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V A S EA + N L++D M + F Sbjct: 7 RILVVDDEQDLCEILKFNLETEGYAVDTANSAEEAMNM--ELTSYNLLLLDVMMGAMSGF 64 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + +L + G GA+ ++ KPF+ + +R + + Sbjct: 65 AMAKKLKEESATAHIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRR 124 Query: 121 QKSKDENQF 129 + ++ Sbjct: 125 TAETENHEQ 133 >gi|265752871|ref|ZP_06088440.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] gi|263236057|gb|EEZ21552.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] Length = 1357 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + +R LF + V+EA + E + +P+ ++ D M Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGGDVAMS-KIPDLIISDIMMPVKDG 1162 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ P + + L + + ++ ++ G + +++KPFN E L+ +R L Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1223 QRERLKR 1229 >gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + R N G+ V A A + E P+ +V+D + + Sbjct: 8 TVLVVDDEPQIVRALRINLNARGYKVITAHDGTAALKAV-AETKPDVVVLDLGLPDLDG- 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V + L D + AGA+ ++ KPF + L +R + Sbjct: 66 TEVIAGLRGWTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVRR 123 >gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYT-YEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + F +A +E+ P+ +++D + G+ Sbjct: 3 TRILVVDDDTALAEMIGIMLESEHYEPFFCADGAQALATF-REVNPHLVLLDLMLPGLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +DV V L D + ++AG AGA+ ++ KPF + L +R + Sbjct: 62 VEICRLIRAE---SDVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 804 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLLV+ + +V + ++V AT EF E + +++D + + Sbjct: 1 MK-LLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEM-FEYDLIMLDLMLPKLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F R+ + + + D + AGA+ +L+KPFN + L +R L Sbjct: 59 GIQFCQQRRKQGDL--TPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 L++VD + ++ R +GF + + E E+ P+ L++D M + Sbjct: 509 KLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTN-PDLLILDVEMPEISGI 567 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + VR P ++ V +L + + G +AGA+ ++ KP L + Sbjct: 568 DLCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRI 621 Score = 68.7 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 3/118 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LL+VD+ + + +G A ++ +A + P+ +++D G Sbjct: 385 LLIVDNDFALAQAIATQAKIWGLKSEIACNLSQA-KRAIASFQPDVILLDLFFPDTGENG 443 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L + L + DF + AR G FL KP E + A+ ++ Q Sbjct: 444 LELLQELSQLIPSIPTIVLTAQNDFSFRVKVARLGGVGFLQKPLAPERIVEAIVKVVQ 501 >gi|332882614|ref|ZP_08450226.1| fused DNA-binding response regulator in twresponse regulator/sigma54 interaction protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679414|gb|EGJ52399.1| fused DNA-binding response regulator in twresponse regulator/sigma54 interaction protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 387 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDF--GFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+++ +R+V + + + VFEA+ E E +K+ + ++ D M Sbjct: 1 MTKILIIEDESAIRRVLSKILQEESKEYEVFEASDGIEGLEKLKKDDY-DLVLCDIKMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + +V + D E + R GA ++ KP + L +R Sbjct: 60 MDGLEVLTEAKKIKPEVPFVMISGHGDLETAVNAMRLGAYDYISKPPDLNRLLNTVRNAL 119 Query: 119 QMQKSKDENQFLD 131 QK EN+ L Sbjct: 120 DKQKLVVENKHLK 132 >gi|293603634|ref|ZP_06686055.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292818070|gb|EFF77130.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 236 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ N G+ A + P+ LV+D + G Sbjct: 9 TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDATD-LSSRITRYAPDLLVLDRMLPGGDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R G D+ V L + I G AGA+ ++ KPF+ L + + + + Sbjct: 68 ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRK 127 Query: 122 K 122 + Sbjct: 128 R 128 >gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ ++R + G+ V A A+E K P +++D + + Sbjct: 1 MKQLVLVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLK-YSPCLVILDLMLPKI 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R +V + + + + I+G + GA+ ++ KPF+ L + + Sbjct: 60 SGEEVCQWIRAQERN-EVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAV 118 Query: 118 PQM 120 + Sbjct: 119 LRR 121 >gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|298530225|ref|ZP_07017627.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509599|gb|EFI33503.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 850 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 4/123 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ I + R + GF V A EA E + + +++D + E Sbjct: 728 ILIVEDEKINLMLIRRMLQKKGFNVLTAMDGREALEVLKSNQDISLILMDVMVPVHDGYE 787 Query: 62 FIAHVRQ--MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + + D AG N++L KP + L +R Sbjct: 788 LTRMIRKGDFDGLKQVPIVAVTALADAASRQHCFEAGMNAYLSKPVDNSELMKMIRRYLA 847 Query: 120 MQK 122 + Sbjct: 848 RSQ 850 >gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 263 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 3/122 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEA---REFCEKELLPNYLVIDESMEG 58 + +L+V+ + GF V A++ A E + +++D + G Sbjct: 4 NRILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLPG 63 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + R G + V L + + G AGA+ +L KPF L +R L Sbjct: 64 IDGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALL 123 Query: 119 QM 120 + Sbjct: 124 RR 125 >gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L++D + +V + + G+ V +ATS EA E E + P+ L++D + + Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEK-ESKFNPDLLILDLMLPDI 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V + L + + ++ G G++ ++ KPF+ + L + + Sbjct: 60 SGENVCERIRRESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116 Query: 118 PQMQK 122 + K Sbjct: 117 LKRVK 121 >gi|118591897|ref|ZP_01549292.1| putative transcription regulator protein [Stappia aggregata IAM 12614] gi|118435540|gb|EAV42186.1| putative transcription regulator protein [Stappia aggregata IAM 12614] Length = 245 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 2/121 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLVD +R + L + G+ V A EA C L + +++D M G Sbjct: 26 ILLVDDDKRIRDLLSRLLKENGYRVTTAAHAAEA-RTCLTGLEFDLIILDVMMPGETGLE 84 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 V + + V + L + IAG AG + +L KPF L + + + Sbjct: 85 LAV-SLREESSVPILMLTARSETPDRIAGLEAGVDDYLSKPFEPRELMLRIAAILRRGNQ 143 Query: 124 K 124 + Sbjct: 144 Q 144 >gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1424 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + + + +++D M + Sbjct: 1304 RTVLVVDDDARNLFALSGILELHGFKVLHAENGRKGVDTLLAHPEICLVLMDVMMPEMDG 1363 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R M TD+ V + + ++GA+ ++ KP + L +R Sbjct: 1364 YAATTEIRSMSQYTDLPVVAVTAKAMPGDREKALQSGASDYVTKPVDANDLIACVRRWL 1422 >gi|146552|gb|AAA24042.1| cytoplasmic protein (kdpE) [Escherichia coli] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 245 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + G+ +A + EA E+ + +++D M + Sbjct: 15 MHTILICDDDKDIVSALDIYLSSEGYKTVKAYNGNEALRAVEQND-IHLILMDIMMPELD 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++ G++V + L + + I G GA+ ++ KPFN + ++ + Sbjct: 74 G-IRATAKLREGSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRR 132 >gi|332531237|ref|ZP_08407150.1| response regulator receiver [Hylemonella gracilis ATCC 19624] gi|332039344|gb|EGI75757.1| response regulator receiver [Hylemonella gracilis ATCC 19624] Length = 247 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + G A + R + + +V+D + G Sbjct: 6 RILVVDDDPDIRALLAEYLGGQGLRADCAADGRQMRATLRAAPV-DLVVLDLMLPGEDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V V L D I G GA+ +L KPF L +R + + Sbjct: 65 SLLRWLR-DSEWAHVPVLMLTARGDNVDRIIGLEMGADDYLPKPFEPRELVARIRAVLRR 123 Query: 121 QKS 123 + Sbjct: 124 THA 126 >gi|312879123|ref|ZP_07738923.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782414|gb|EFQ22812.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 476 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD R+V L + + A+S +A E + P+ +++D M G+ F Sbjct: 9 VLIVDDEPSWREVLEVLLLPEEYSLRFASSGIQALEEA-RGRCPDLVLLDVMMPGMDGFQ 67 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ +V V + D + IAG AGA+ F+ KPF+R LR +R + ++ Sbjct: 68 VCRALREQRETGEVPVVMITALEDRQSRIAGVEAGADDFVSKPFDRMELRARIRTILKLD 127 Query: 122 KSKD 125 + + Sbjct: 128 RFRR 131 >gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLLVD + + G+ + S EA ++ + + +++D M + Sbjct: 1 MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHA-DLVLLDVMMPELD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + + + ++ G + GA+ ++ KPF+ L + + Sbjct: 60 GWETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] Length = 224 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + GF V A EA + + +V+D ++ + Sbjct: 2 RILLVEDHPELSHWLQKALTHVGFAVDVANDGIEA-DHLLQHEKYALVVLDVALPRLNGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L D + G +GA+ +L KPF + L +R L + Sbjct: 61 ELLARLRKRGQTLPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALLRR 118 >gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D +R++ + GF EA EA + + +V+D M + Sbjct: 10 MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L + + + G G + +L KPF+ L +R L + Sbjct: 69 GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128 Query: 121 QK 122 K Sbjct: 129 YK 130 >gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 239 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +V+ ++++ R + G+ V E E++ P+ V+D + GV Sbjct: 7 KLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKK-PDLFVLDIMLPGVDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ + + L + D + G GA+ ++ KPF+ ++ + Sbjct: 66 FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 125 Query: 120 MQKSKDEN 127 Q EN Sbjct: 126 RQADSFEN 133 >gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] Length = 247 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LLV+ + + G+ V A E + L++D + G Sbjct: 25 KKILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLA-TTDAFDVLLLDVMLPGING 83 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + V + + +AG AGA+ +++KPF E L +R + + Sbjct: 84 IEICRRIRTQ---SQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILR 140 Query: 120 MQKSKD 125 +++ Sbjct: 141 RATTQE 146 >gi|120610912|ref|YP_970590.1| response regulator receiver protein [Acidovorax citrulli AAC00-1] gi|120589376|gb|ABM32816.1| response regulator receiver protein [Acidovorax citrulli AAC00-1] Length = 140 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 4/120 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+VD +R++ R D G + EA S A + P+ +++D M G Sbjct: 13 MKTVLIVDDHAEIRRLLRMTLEDQGVALHEAASGEAALAMARAQ-RPDLVLLDLMMPGSL 71 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E +R P + V L + AG +AGA+ F+ KPF+ L +R L Sbjct: 72 DGMEVCRRIRNDPDLSHTRVIILSARDGLQDRAAGMQAGASGFISKPFSPAYLAETVRRL 131 >gi|13472444|ref|NP_104011.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14023190|dbj|BAB49797.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 238 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 9/133 (6%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M S +L+VD +R + + F G A E E + + +V+D + Sbjct: 1 MKSDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTE-MEAVLRRAQVDLIVLDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G LE +R + L + + G GA+ ++ KPF+ L +R Sbjct: 60 GKSGLELCRDLRAQYS---TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIR 116 Query: 116 ELPQMQKSKDENQ 128 + + + + + Sbjct: 117 AVLRRNGAAEPKR 129 >gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] Length = 223 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + E + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTKQTI 127 >gi|330996319|ref|ZP_08320203.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329573369|gb|EGG54980.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1364 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLE 61 +L+V+ +R+ F+ + V E ++ EA ++ + + +V D M + Sbjct: 1092 RILVVEDETAIRRYLHGEFSGE-YHVCECSNGQEAWDYIVQNVEKVDLVVSDVMMPVMDG 1150 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ + V L + D + G GA++++ KPFN + LR L + Sbjct: 1151 IALCRNIKGSFNTNHIPVILLTAKSDDADRLEGLSIGADAYMSKPFNMDVLRQTAENLLK 1210 Query: 120 MQKSKD 125 ++ Sbjct: 1211 NKRRLQ 1216 >gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 235 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+D + V G+ A + P+ +++D + G+ Sbjct: 13 KILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMA-RSFKPDIIILDVMLPGMDGI 71 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +AH+R+ ++V+V L + I G GA+ +L KPF+ L ++ + Sbjct: 72 ELLAHLRRE---SNVYVIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRR 128 >gi|295103423|emb|CBL00967.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 224 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + + F GF V A + EA + EK+ P+ +++D +M G L Sbjct: 4 KILIADDESDIVSMLGSFFESKGFRVLPAFNGAEALKQVEKQ--PDIILLDINMPGTDGL 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + +L ++ + G G + +++KPF+ L +R + Sbjct: 62 EVCKRIR---DHISCPILFLTARIEDTDKVKGFTVGGDDYIVKPFSLMELEARVRAHLRR 118 Query: 121 Q 121 + Sbjct: 119 E 119 >gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 234 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 46/128 (35%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ R F V + E E + +++D + Sbjct: 1 MKRILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAED-FDLILLDLMLPSAD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ D + + + + G GA+ +++KPF+ L ++ Sbjct: 60 GFAVCRAIRQK---KDTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHI 116 Query: 119 QMQKSKDE 126 + + Sbjct: 117 ARYERLTQ 124 >gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 235 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A +E P+ +V+D ++ + Sbjct: 10 RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEA-REFQPDAVVLDVALPDMDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +V V +L E IAG AG + ++ KPF+ E + +R L + Sbjct: 69 TLLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 128 Query: 123 SKDENQ 128 + + Sbjct: 129 AASAAR 134 >gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L++D + +V + + G+ V +ATS EA + + E P+ L++D + + Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPDLLILDLMLPDI 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V + L + + ++ G G++ ++ KPF+ + L + + Sbjct: 60 SGENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116 Query: 118 PQMQK 122 + K Sbjct: 117 LKRVK 121 >gi|26250678|ref|NP_756718.1| DNA-binding transcriptional regulator CpxR [Escherichia coli CFT073] gi|110644249|ref|YP_671979.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 536] gi|191172709|ref|ZP_03034247.1| transcriptional regulatory protein CpxR [Escherichia coli F11] gi|215489244|ref|YP_002331675.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O127:H6 str. E2348/69] gi|218692197|ref|YP_002400409.1| DNA-binding transcriptional regulator CpxR [Escherichia coli ED1a] gi|227885347|ref|ZP_04003152.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 83972] gi|300975749|ref|ZP_07173165.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300986009|ref|ZP_07177684.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301048722|ref|ZP_07195731.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|306813823|ref|ZP_07447999.1| DNA-binding transcriptional regulator CpxR [Escherichia coli NC101] gi|312969335|ref|ZP_07783537.1| transcriptional regulatory protein cpxR [Escherichia coli 2362-75] gi|331649764|ref|ZP_08350844.1| transcriptional regulatory protein CpxR [Escherichia coli M605] gi|26111109|gb|AAN83292.1|AE016770_92 Transcriptional Regulatory protein cpxR [Escherichia coli CFT073] gi|110345841|gb|ABG72078.1| transcriptional regulatory protein CpxR [Escherichia coli 536] gi|190907013|gb|EDV66614.1| transcriptional regulatory protein CpxR [Escherichia coli F11] gi|215267316|emb|CAS11765.1| DNA-binding response regulator CpxR in two-component regulatory system with CpxA [Escherichia coli O127:H6 str. E2348/69] gi|218429761|emb|CAR10585.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli ED1a] gi|222035625|emb|CAP78370.1| Transcriptional regulatory protein cpxR [Escherichia coli LF82] gi|227837723|gb|EEJ48189.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 83972] gi|300299468|gb|EFJ55853.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300306467|gb|EFJ60987.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300410237|gb|EFJ93775.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|305852821|gb|EFM53268.1| DNA-binding transcriptional regulator CpxR [Escherichia coli NC101] gi|307556055|gb|ADN48830.1| transcriptional regulatory protein CpxR [Escherichia coli ABU 83972] gi|312285882|gb|EFR13800.1| transcriptional regulatory protein cpxR [Escherichia coli 2362-75] gi|312948488|gb|ADR29315.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O83:H1 str. NRG 857C] gi|315292748|gb|EFU52100.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|324006816|gb|EGB76035.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324012550|gb|EGB81769.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|331041397|gb|EGI13547.1| transcriptional regulatory protein CpxR [Escherichia coli M605] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A + + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 247 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A A +E P+ +++D + V Sbjct: 23 RVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSA-REFRPDAVILDIMLPDVDGL 81 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 82 SLLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 141 Query: 123 S 123 + Sbjct: 142 A 142 >gi|327193856|gb|EGE60733.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli CNPAF512] Length = 234 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R V G S EA + + +++D M + Sbjct: 4 RILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGN-IDLIILDIGMPDMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + +L + I G G + ++ KPF+ L ++ + + Sbjct: 63 EVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119 Query: 121 QKS 123 + Sbjct: 120 SGN 122 >gi|307720447|ref|YP_003891587.1| two component transcriptional regulator, winged helix family [Sulfurimonas autotrophica DSM 16294] gi|306978540|gb|ADN08575.1| two component transcriptional regulator, winged helix family [Sulfurimonas autotrophica DSM 16294] Length = 220 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ F F V +A + E + +++D ++ G+ Sbjct: 1 MQKILMIEDDLELAEILTEYLEQFEFEVITEDDPFKAVSILKLEP-FDLVILDLTLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ + D I GA+ +L KP++ L + + Sbjct: 60 GLEVCEAIRER---QDIPIIISSARSDVTDKIKALELGADDYLPKPYDPRELEARIHSVL 116 Query: 119 QMQKSKDENQ 128 + ++K E + Sbjct: 117 RRYEAKSEEK 126 >gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1] gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1] Length = 319 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|157150116|ref|YP_001450468.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157074910|gb|ABV09593.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A E E +K+ + + ++ D M + Sbjct: 3 KTILLVDDEVDILDIQKRYLLQAGYQVLVAHDGLEGLELFKKKSV-DLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L D + + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDFISEVQYLAPDQPFLFTTAKTSEQDRIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121 Query: 122 KSKDENQFLD 131 + DE + ++ Sbjct: 122 QRGDETEQIE 131 >gi|160889014|ref|ZP_02070017.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492] gi|317479297|ref|ZP_07938432.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156861481|gb|EDO54912.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492] gi|316904585|gb|EFV26404.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA N L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALRM--DIGSYNLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ + + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122 Query: 121 QKS 123 + Sbjct: 123 TQQ 125 >gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L++D + +V + + G+ V +ATS EA + + E P+ L++D + + Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPDLLILDLMLPDI 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V + L + + ++ G G++ ++ KPF+ + L + + Sbjct: 60 SGENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116 Query: 118 PQMQK 122 + K Sbjct: 117 LKRVK 121 >gi|91790298|ref|YP_551250.1| adenylate/guanylate cyclase [Polaromonas sp. JS666] gi|91699523|gb|ABE46352.1| adenylate/guanylate cyclase [Polaromonas sp. JS666] Length = 561 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + +R L D + V A++ + E P +++D M + Sbjct: 29 RVLIVEDTADIRYFLETLLKDQ-YEVAAASAGETGLQMATGEPRPEIILLDVMMPDMDGY 87 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + P ++ V +L G GA ++ KP + L +R + Sbjct: 88 EVMRQLAKDPRTAEIPVIFLTALGSVADEQKGLDLGATDYITKPISPPILLARVRLHLER 147 Query: 121 QKSKDENQFLDA 132 + + L Sbjct: 148 SANARRLKDLSE 159 >gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|319952421|ref|YP_004163688.1| histidine kinase [Cellulophaga algicola DSM 14237] gi|319421081|gb|ADV48190.1| histidine kinase [Cellulophaga algicola DSM 14237] Length = 1388 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+V+ + +R R F + V A E + KE LP+ ++ D M + F Sbjct: 1140 TLLVVEDNAELRNYLRDEFKQQ-YKVLVAKDGQEGLQMA-KEFLPDVILTDVIMPEMDGF 1197 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ + + + L + + I G GA+++++KPF+ L +++L Sbjct: 1198 TFCKNIKEDLRTSHIPLLMLTAKAKIDDRIEGIGLGADAYMVKPFDMRLLSLRLKQLITS 1257 Query: 121 QKS 123 ++ Sbjct: 1258 RQL 1260 >gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 237 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ + +A + E + +++D + + Sbjct: 1 MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSED-FDAILLDLMLPDLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + + ++G GA+ +++KPF E L +R + + Sbjct: 60 GL-EIARRVRQSKATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118 Query: 121 QKSKD 125 K + Sbjct: 119 VKIEK 123 >gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15] gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04] gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C] gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082] gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A] gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B] gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01] gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15] gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01] gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B] gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A] gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C] gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04] gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082] Length = 236 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + ++ ++ G+ +A EA L++D M + Sbjct: 9 KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDGM 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+++ + + + L + I G AGA+ ++ KPFN + ++ L + K Sbjct: 69 -QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 127 Query: 123 SK 124 + Sbjct: 128 MQ 129 >gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271] gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +V+D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMVLDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ GF V EA E +E P+ L++D + G + Sbjct: 4 RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EMRLQERTPDLLILDWMLPGVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 63 ELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 ARPE 126 >gi|306520551|ref|ZP_07406898.1| two-component system response regulator [Clostridium difficile QCD-32g58] Length = 210 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+++ ++++ + G+ V A E + ++ + +++D M Sbjct: 4 SILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSY-DLVILDIMMPNLDGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + +L D + G + ++ KPF+ L + + + Sbjct: 63 GVCKMIRKSSS---VPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR 119 Query: 121 QK 122 Sbjct: 120 SN 121 >gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + F V + E + + +V+D + G+ Sbjct: 2 RILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSY-DLIVLDRMLPGLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + L + + G AGA+ +L+KPF E L +R L + Sbjct: 61 EICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRR 118 >gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LL + ++R R GF V EAT+ EA E P +++D M Sbjct: 7 RVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTE-QPQLIILDLMMPRLTGF 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + V + L + GA+ +L KPF + L +R + + Sbjct: 66 EVCQRIREQSI---VPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRR 122 Query: 121 QK 122 + Sbjct: 123 SQ 124 >gi|85860311|ref|YP_462513.1| response regulator receiver domain-containing protein [Syntrophus aciditrophicus SB] gi|85723402|gb|ABC78345.1| response regulator receiver domain with sensory domain [Syntrophus aciditrophicus SB] Length = 596 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R + L + + + AT+ EA E +K + P+ +++D M G+ F Sbjct: 19 RILIVDDLPQERWMLGALLKSYDYELSYATNGHEALELAKK-INPDLILLDVMMPGMDGF 77 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ PL +V + + + E G GA+ F+ KPF+R L+ +R + Sbjct: 78 EVCRRIRKTPLIAEVPIMMVTALNEAEVRRKGVEIGADDFISKPFDRAELQARVRNI 134 >gi|83311012|ref|YP_421276.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945853|dbj|BAE50717.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 228 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +RK R G+ V EA S + P+ L++D + + Sbjct: 1 MSRILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAAC-PDLLILDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + D+ + L + + GAN ++ KPF L +R + + Sbjct: 60 G-QEIISAVRQDCDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLR 117 >gi|15598388|ref|NP_251882.1| two-component response regulator GltR [Pseudomonas aeruginosa PAO1] gi|107102722|ref|ZP_01366640.1| hypothetical protein PaerPA_01003788 [Pseudomonas aeruginosa PACS2] gi|116051181|ref|YP_789988.1| two-component response regulator GltR [Pseudomonas aeruginosa UCBPP-PA14] gi|218890616|ref|YP_002439480.1| two-component response regulator GltR [Pseudomonas aeruginosa LESB58] gi|254236153|ref|ZP_04929476.1| two-component response regulator GltR [Pseudomonas aeruginosa C3719] gi|254241879|ref|ZP_04935201.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192] gi|296388322|ref|ZP_06877797.1| two-component response regulator GltR [Pseudomonas aeruginosa PAb1] gi|313108507|ref|ZP_07794508.1| two-component response regulator GltR [Pseudomonas aeruginosa 39016] gi|9949311|gb|AAG06580.1|AE004743_3 two-component response regulator GltR [Pseudomonas aeruginosa PAO1] gi|1621045|gb|AAC44475.1| GltR [Pseudomonas aeruginosa PAO1] gi|115586402|gb|ABJ12417.1| two-component response regulator GltR [Pseudomonas aeruginosa UCBPP-PA14] gi|126168084|gb|EAZ53595.1| two-component response regulator GltR [Pseudomonas aeruginosa C3719] gi|126195257|gb|EAZ59320.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192] gi|218770839|emb|CAW26604.1| two-component response regulator GltR [Pseudomonas aeruginosa LESB58] gi|310881010|gb|EFQ39604.1| two-component response regulator GltR [Pseudomonas aeruginosa 39016] Length = 242 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + + R+ +E + ++D + Sbjct: 6 RSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEA-SLAILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + + L D + G GA+ +L KPF+ L ++ L + Sbjct: 65 FSLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|326385473|ref|ZP_08207112.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326210012|gb|EGD60790.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 235 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +L V+ +R + D+G+ V A + E E + + +V+D + G Sbjct: 1 MTTHSILFVEDDPALRLLTARALRDYGYDVRTAATGAEMWAMLETQPA-DLIVLDIMLPG 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++ ++V V ++ E + G GA+ +L KPF L + + Sbjct: 60 GNGL-ELLRRLRKQSEVPVIFVSARGSEEDRVLGLELGADDYLPKPFGTRELAARIAAVF 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans TK24] gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans TK24] Length = 285 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A A + ++ P+ +V+D + + Sbjct: 60 RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTA-RDFRPDAVVLDMMLPDMDGL 118 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E IAG AG + ++ KPF+ E + +R L + Sbjct: 119 SVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 178 Query: 123 SKDENQFLDAI 133 + D + D++ Sbjct: 179 AAD--RRSDSV 187 >gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 235 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 50/133 (37%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L++ V + + G+ + A + + + +++D + + Sbjct: 1 MKKIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQAND-FDLVILDIMLPEMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + +L E ++ G +G + +L+KPF L ++ L Sbjct: 60 GLDVCKEIRK--TNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLL 117 Query: 119 QMQKSKDENQFLD 131 + + + + Sbjct: 118 RRSNNNGPQEIAE 130 >gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + L GF +A ++ + P+ +++D + G+ Sbjct: 1 MTHVLIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDR-VSPDIVLLDLMLPGMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + V V + + G GA+ ++ KP++ L +R + + Sbjct: 60 G-TEICKALRTRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118 Query: 121 QKSKDENQF 129 E Sbjct: 119 GGDLAEEDL 127 >gi|226358131|ref|YP_002787870.1| histidine kinase, hybrid [Deinococcus deserti VCD115] gi|226319774|gb|ACO47768.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115] Length = 1644 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + V A + +A + E+ + +++D M Sbjct: 1524 KRVLVVDDDIRNIFALTAVLERHQMEVLTAENGRDAIQMLEQHPELDIVLMDVMMPELDG 1583 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++ + L + +GA+ ++ KP N L +R Sbjct: 1584 YETTRLIRQNRKWKNLPIISLTAKAMPGDREQSIESGASDYISKPVNTGQLLSLLRVWLS 1643 Query: 120 M 120 Sbjct: 1644 R 1644 Score = 76.4 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +LL+V+ R+ L + +S EA E + + + +V+D ++ + Sbjct: 1378 KNLLVVEDDGPQRQNIVDLIGNGDVKTTAVSSGAEALELLAR-VPFDCIVLDLNLPDMSG 1436 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELP 118 E + ++Q P + + + + R A S +LK + E L + Sbjct: 1437 FELMTTLQQTPSLRAIPIIVYTAQDLTRQQETQLRKAAKSIILKDVRSPERLLDEVTLFL 1496 Query: 119 QMQKS---KDENQFLD 131 ++ + + Q L+ Sbjct: 1497 HRVEANLPEAKRQVLE 1512 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 9/123 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + L + GFM AT +A + P + +D ++ Sbjct: 1258 VLIVEDDPTYAGILLDLARERGFMGLIATRGDQALTLAQT-YRPAAITLDLTLPDTSGWA 1316 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA---MRELP 118 + ++ PL + V+ + EK + G + GA + K +RE L A + Sbjct: 1317 VLDSLKHDPLTRHIPVHIISG---QEKSLVGRKLGALDHITKSGDREQLTAAFASLENFL 1373 Query: 119 QMQ 121 + Sbjct: 1374 ARR 1376 >gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855] gi|212662488|gb|EEB23062.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855] Length = 1444 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + + + + D F ++ A E + P+ +V D+ M + Sbjct: 1189 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1246 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + V L + + E GAN++++KPF+++ L + +L Sbjct: 1247 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1306 Query: 121 QKSKDE 126 +K E Sbjct: 1307 RKLFRE 1312 >gi|167764205|ref|ZP_02436332.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183] gi|167698321|gb|EDS14900.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183] Length = 1317 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + ++ + F + V EA E P+ ++ D M + Sbjct: 1071 VLVVEDEKNICELLCDIL--FEYTVRVTRDGIEALSEIE-HNHPDIIISDIMMPNMDGLT 1127 Query: 64 A--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + + + E I + GA++++ KPF+ + + + L Q Sbjct: 1128 LINKLKSELKTSYIPIIGVSAKASVEDQINAFKHGADAYITKPFHPKQIISTIENLLSRQ 1187 Query: 122 KSKDE--NQFLDAI 133 + N L +I Sbjct: 1188 TLLKDYFNSSLSSI 1201 >gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 1 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHY-SLIILDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V YL E + G AGAN +L+KPF+ L +R + Sbjct: 59 GW-QVLRALRTAHQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 Query: 121 Q 121 Sbjct: 118 H 118 >gi|329961691|ref|ZP_08299737.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531563|gb|EGF58400.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1338 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + +R++ ++F+ F + V A E E +PN +V D M + Sbjct: 1081 KILIVEDNASIREMLANIFHPF-YEVLTAPDGEEGLALVHSE-MPNIVVSDVVMPKMSGT 1138 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G R GA+ ++ KPFN L L Sbjct: 1139 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVNS 1198 Query: 121 QKSKDE 126 + E Sbjct: 1199 RILLQE 1204 >gi|326317892|ref|YP_004235564.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374728|gb|ADX46997.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 375 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + + L D ++V A +A + + P+ +++D M G Sbjct: 19 TVLVVDDTPDNLALMATLLRDH-YLVKVANHGEKALRIAQSDAPPDLILLDIMMPGLDGY 77 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ V +L E G GA ++ KP + L + + Sbjct: 78 EVCRQLKAHPAARDIPVIFLTARSTPEDERRGLSVGAVDYITKPISPPILLARVHTHLTL 137 Query: 121 QKSKD 125 + + D Sbjct: 138 KATAD 142 >gi|298530005|ref|ZP_07017407.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298509379|gb|EFI33283.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 310 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD L D + + ATS A E E + P+ +++D M + Sbjct: 10 RSVLIVDDQPDNIHALGKLIKDE-YRIMAATSGARALEIAESDNPPDLILLDVMMPEMDG 68 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ + V ++ E G GA ++ KPF +R ++ Sbjct: 69 YEVCRRLKRNEKTNSIPVIFVTAMDSAEDEETGFNLGAVDYISKPFKPTIVRARIKNQMN 128 Query: 120 MQKSKDENQFLD 131 ++ D + L Sbjct: 129 LKIKTDMLEKLS 140 >gi|212691246|ref|ZP_03299374.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855] gi|237712324|ref|ZP_04542805.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|237726460|ref|ZP_04556941.1| two-component system response regulator [Bacteroides sp. D4] gi|265752033|ref|ZP_06087826.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|212666478|gb|EEB27050.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855] gi|229434986|gb|EEO45063.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|229453645|gb|EEO59366.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263236825|gb|EEZ22295.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 54/133 (40%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + + L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM--ELTQYDLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + + + Sbjct: 123 TSPTQGKEVQEQL 135 >gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+V+ ++ + F GF V A +A + + + +++D + + Sbjct: 6 LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSY-DIIILDVVIPKIDGVKV 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + L + E + G AGA+ ++ KPF+ + L ++ + + Sbjct: 65 CKQLRLQSE---IPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYN 121 Query: 123 SKDENQ 128 E + Sbjct: 122 KVQEEK 127 >gi|149911937|ref|ZP_01900535.1| hypothetical two-component response regulator [Moritella sp. PE36] gi|149804984|gb|EDM65013.1| hypothetical two-component response regulator [Moritella sp. PE36] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + F G+ + A + + +++D M + Sbjct: 1 MK-ILLVEDHQDIAGIIFDFFEIKGYTLDYAQDGVQGYALA-SNNYYDLIILDIQMPRMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D + L E +AG GA+ +L+KPF+ + L ++ L + Sbjct: 59 GLTVCQKLREQGDDTPILMLTARDTREDTLAGFDCGADDYLIKPFDLDILAARIQALHRR 118 Query: 121 QKSKDENQFL 130 + K+ + L Sbjct: 119 RSGKNAAKVL 128 >gi|149010945|ref|ZP_01832250.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147764581|gb|EDK71511.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +K+ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L + ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETELIS 131 >gi|104780757|ref|YP_607255.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95109744|emb|CAK14447.1| putative sensor histidine kinase/response regulator hybrid [Pseudomonas entomophila L48] Length = 784 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G V A EA E E+E + +++D +M + + Sbjct: 664 RILLVEDNPVNQLVAKGMLAKLGCQVQVAAHGAEALELLEQET-FDLVLMDCNMPVMDGY 722 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +RQ ++ + L E+ AG N +L KPF RE L + Sbjct: 723 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALI 776 >gi|91213453|ref|YP_543439.1| DNA-binding transcriptional regulator CpxR [Escherichia coli UTI89] gi|117626180|ref|YP_859503.1| DNA-binding transcriptional regulator CpxR [Escherichia coli APEC O1] gi|218560980|ref|YP_002393893.1| DNA-binding transcriptional regulator CpxR [Escherichia coli S88] gi|237702944|ref|ZP_04533425.1| transcriptional regulatory protein CpxR [Escherichia sp. 3_2_53FAA] gi|331660467|ref|ZP_08361401.1| transcriptional regulatory protein CpxR [Escherichia coli TA206] gi|331685652|ref|ZP_08386235.1| transcriptional regulatory protein CpxR [Escherichia coli H299] gi|91075027|gb|ABE09908.1| transcriptional regulatory protein CpxR [Escherichia coli UTI89] gi|115515304|gb|ABJ03379.1| transcriptional regulatory protein CpxR [Escherichia coli APEC O1] gi|218367749|emb|CAR05543.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli S88] gi|226902881|gb|EEH89140.1| transcriptional regulatory protein CpxR [Escherichia sp. 3_2_53FAA] gi|281180983|dbj|BAI57313.1| two-component response regulator [Escherichia coli SE15] gi|294490068|gb|ADE88824.1| transcriptional regulatory protein CpxR [Escherichia coli IHE3034] gi|307628987|gb|ADN73291.1| DNA-binding transcriptional regulator CpxR [Escherichia coli UM146] gi|315289598|gb|EFU48991.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315300224|gb|EFU59461.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|323949403|gb|EGB45292.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323954316|gb|EGB50101.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|331052416|gb|EGI24453.1| transcriptional regulatory protein CpxR [Escherichia coli TA206] gi|331077123|gb|EGI48338.1| transcriptional regulatory protein CpxR [Escherichia coli H299] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A + + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + G+ V + + +A + E + L + +++D + V F Sbjct: 4 NILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNL-DLVILDVMLPDVDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L +V+ I G GA+ ++ KPFN + ++ + Sbjct: 63 RICQKIREQYFY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119 >gi|30018772|ref|NP_830403.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218232832|ref|YP_002365383.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218895640|ref|YP_002444051.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228899271|ref|ZP_04063534.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228906332|ref|ZP_04070217.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228957004|ref|ZP_04118779.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228963678|ref|ZP_04124822.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|229042443|ref|ZP_04190189.1| Two-component response regulator [Bacillus cereus AH676] gi|229108192|ref|ZP_04237814.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126017|ref|ZP_04255040.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229143310|ref|ZP_04271741.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296501346|ref|YP_003663046.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29894313|gb|AAP07604.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218160789|gb|ACK60781.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218544181|gb|ACK96575.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228640117|gb|EEK96516.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228657442|gb|EEL13257.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228675208|gb|EEL30430.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228726897|gb|EEL78108.1| Two-component response regulator [Bacillus cereus AH676] gi|228796026|gb|EEM43490.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228802635|gb|EEM49477.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228853355|gb|EEM98127.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228860302|gb|EEN04699.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|296322398|gb|ADH05326.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKEFDIILLDVMMPSMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 60 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116 Query: 119 QMQK 122 + K Sbjct: 117 RRTK 120 >gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB [Agrobacterium sp. H13-3] gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB [Agrobacterium sp. H13-3] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEA-EIRLQERIPDLLILDWMLPGVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 63 ELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 ARPE 126 >gi|82617296|emb|CAI64201.1| probable response regulator (CheY-like receiver domain and DNA-binding HTH domain) [uncultured archaeon] Length = 170 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + V A EA E P+ +++D + Sbjct: 48 TKILVVDDEPDTLLPLTRALEADNYAVVGAVDGAEALIKVSNET-PDLILLDLMLPKLNG 106 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +++ P + V L + + + + G GA+ ++ KPF+ L+ +R L + Sbjct: 107 YEVCMKLKENPATRHIPVIMLSAKGEIKDKVLGIEIGADDYVTKPFDLLELKARIRALLR 166 Query: 120 MQKS 123 + Sbjct: 167 RTGA 170 >gi|330892053|gb|EGH24714.1| two-component response regulator transcription regulator protein [Pseudomonas syringae pv. mori str. 301020] Length = 236 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + K+ ++ GF V EA +V+D M + Sbjct: 1 MPKVLLIDDDVELTKILSQYLSNEGFDVLAIHDGEEAISR-SANERFEIVVLDIMMPRLS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ + + V + L D + G GA+ ++ KP L +R + + Sbjct: 60 GL-QVLQRIRINSSVPILMLTARGDDVDKVTGLNLGADDYVSKPCTPAELVARIRAILRR 118 >gi|291516211|emb|CBK69827.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] Length = 240 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ +VD + ++ + + GF A E + P+ +++D + G+ Sbjct: 1 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEIFPI-VKPDLILLDVMLPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++V + L + D ++AG AGA+ ++ KPF L + Sbjct: 60 GTGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARF 116 Query: 119 QMQKSKDEN 127 ++ K E+ Sbjct: 117 RIAKPAAED 125 >gi|237725959|ref|ZP_04556440.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435767|gb|EEO45844.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1448 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + +R + ++V EA + C+ E +E LP+ ++ D M + Sbjct: 1181 TRILIIEDNEELRHFICGVLARE-YVVLEAGNGCQGLEMTLRE-LPDIVISDIMMPEMDG 1238 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + V+ + + L + I G GA+ ++ KPF+ L+ + L + Sbjct: 1239 IEYLKRVKGNNDICHIPIILLSAKSSLNDQIQGLEYGADEYITKPFSSAYLKARVDSLLK 1298 Query: 120 MQK 122 ++ Sbjct: 1299 QRQ 1301 >gi|148977229|ref|ZP_01813856.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3] gi|145963511|gb|EDK28774.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + + + + + GF V EA E E + +++D M + Sbjct: 1 MANILLIDDDTELTSLLKDILSFEGFTVSEANDGYAGLEAINDE--IDLILLDVMMPRLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GM-ETLKKLREHWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QK 122 + Sbjct: 118 TQ 119 >gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Frankia alni ACN14a] gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Frankia alni ACN14a] Length = 240 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R GF V A + A + + P+ +++D + V F Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQA-RPDLMILDVMLPDVDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G V V YL IAG G + ++ KPF + L +R + + Sbjct: 65 EVCRTLRA--GGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRR 122 >gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 239 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLLVD +R+ GF V + EAR + +++D M G Sbjct: 7 LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNAN-AIDLVILDIMMPGEDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H+R+ +++ V L + + I G GA+ ++LKPF+ L ++ + + Sbjct: 66 LCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 121 >gi|304317247|ref|YP_003852392.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778749|gb|ADL69308.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 320 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD R + +++ + G+ ++E+ EA + +LP+ +++D M G Sbjct: 14 KSILIVDDDKFSRTILKNILSGAGYKIYESQDGDEAL-KLYRLILPDMIILDVVMPGLSG 72 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +R V V L DFE+ I G GA++++ KPFN + L ++ L Q Sbjct: 73 FDLLRILRDEEENQLVPVILLTSSDDFEEKIHGLELGADAYITKPFNEKELLAQVKNLFQ 132 Query: 120 MQK 122 + Sbjct: 133 RIE 135 >gi|291294713|ref|YP_003506111.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469672|gb|ADD27091.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 216 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ VR+ R G+ V EA + E + P +V+D + G Sbjct: 1 MARVLLIEDDAGVREALRLGLELEGYTVLEAANGAEGLRRLAEN--PELVVLDVLLPGGD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + +R+ V V L + E + G R GA+ +L+KP+ L + L Sbjct: 59 GFGVLREIRRQSA---VPVLMLTALDEVEWRVKGLREGADDYLVKPYALSELVARLEALL 115 Query: 119 QMQKSKDE 126 + K +E Sbjct: 116 RRSKRPEE 123 >gi|254424941|ref|ZP_05038659.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192430|gb|EDX87394.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 216 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+ D +R + G+ V A A E KE + L++D M G+ Sbjct: 5 SILVADDEKSIRLTVAQALSSQGYEVATAIDGSTALEQL-KETPTDLLLLDIQMPGMTGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + V + + + + GA +L KPF LR + + + + Sbjct: 64 EVLQKAITQQPSLKVVMVSAHGSVDNAVEAMKLGAVDYLQKPFTPSELRELVNRVLERE 122 >gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ GF V EA E +E P+ L++D + G + Sbjct: 4 RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EMRLQERTPDLLILDWMLPGVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 63 ELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 ARPE 126 >gi|313905958|ref|ZP_07839313.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469218|gb|EFR64565.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 236 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ VR + + A + A P+ + +D + + Sbjct: 5 SILVVEDDPPVRNLITTTLGMHQYEYLVAGNGQTAIMQAASHN-PDVIFLDLGLPDMDGV 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ T++ + + + I AGA+ +L KPF+ E L +R + Sbjct: 64 -DVIRKVRTWTEIPIIVISARSEEADKIEALDAGADDYLTKPFSVEELLARLRVSLRR 120 >gi|291563054|emb|CBL41870.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 235 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 47/126 (37%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + V A + EA + P+ +++D + + Sbjct: 6 RVLVVEDDKRISNFIKTVLEANNYDVIVAQTGAEAYSMVTSQC-PDVVILDLGLPDMDGM 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + + V + + GA+ ++ KPF L +R + + Sbjct: 65 -KILQGVREWSAMPVIVVSARTHERDKVEALDLGADDYITKPFGTSELLARIRTAIRHTR 123 Query: 123 SKDENQ 128 S NQ Sbjct: 124 SGIPNQ 129 >gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] Length = 253 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G V A + + +V+D + G+ F Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDY-DAVVLDVMLPGIDGF 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L IAG GA+ +L KPFN + L +R L + Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + G+ V A EA EK + +++D + G Sbjct: 5 KILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVT-LILLDWMLPGYDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ +DV V + + G + ++ KPF E L +R + + Sbjct: 64 TV-LRRIRQTSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILRRIN 122 Query: 123 SKD 125 + Sbjct: 123 REQ 125 >gi|254884267|ref|ZP_05256977.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1467 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + + + + D F ++ A E + P+ +V D+ M + Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + V L + + E GAN++++KPF+++ L + +L Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 Query: 121 QKSKDE 126 +K E Sbjct: 1330 RKLFRE 1335 >gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM 16841] gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM 16841] Length = 251 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 52/133 (39%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ +V+ +R++ R+ + G+ V E + + E +P +++D + Sbjct: 29 MATIYIVEDDVNIREIERYALKNSGYQVEEFECGADLFKRLES-KVPALILLDIMLPNED 87 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R V + + + + G GA+ ++ KPF L ++ L Sbjct: 88 GLDILTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALL 147 Query: 119 QMQKSKDENQFLD 131 + + E + Sbjct: 148 RRTTNAQEESQIA 160 >gi|218681085|ref|ZP_03528982.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 233 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD +R + + GF V A EA+ L + +++D M G +E Sbjct: 14 LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGIE 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +V + L + I G AGA+ +L KPF+ L + + + Sbjct: 73 VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|183219817|ref|YP_001837813.1| transcriptional regulatory protein CreB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909952|ref|YP_001961507.1| two component response regulator sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774628|gb|ABZ92929.1| Sensor protein of a two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778239|gb|ABZ96537.1| Transcriptional regulatory protein CreB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 55/137 (40%), Gaps = 12/137 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LL++ +++ + GF + A + + + + +++D + Sbjct: 1 MIKILLIEDEPGIQETIQIALEAEGFSLSIAPTGIQGLQMLA--DDISLILLDIGLPDQS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R+ + V +L + G GA+ +++KPF+ L +R + Sbjct: 59 GFEVLKSIRK---AASIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAIL 115 Query: 119 QMQKS-----KDENQFL 130 + ++ + NQ L Sbjct: 116 RRTQNPLVLEQKSNQKL 132 >gi|332307772|ref|YP_004435623.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175101|gb|AEE24355.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 235 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLLL+D + ++ + G+ V A+ + + +++D + V Sbjct: 4 KSLLLIDDDQALTELLQEYLTAQGYTVQVASDGEAGLLAAKSGQHFDLIILDVMLPKVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++++ V L + D I G GA+ +L KPFN L ++ + + Sbjct: 64 F-EVLKRLRSTHVTPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRV 122 Query: 122 KSKDENQ 128 + Q Sbjct: 123 DIQAGLQ 129 >gi|260462562|ref|ZP_05810769.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031758|gb|EEW33027.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 239 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M S +L+VD +R + + F G A E E + + +V+D + Sbjct: 1 MKSDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIE-METILRRAQVDLIVLDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G LE +R + L + + G GA+ ++ KPF+ L +R Sbjct: 60 GKSGLELCRDLRAQYS---TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIR 116 Query: 116 ELPQMQKSKDENQF 129 + + + E + Sbjct: 117 AVLRRNGAAAEPKR 130 >gi|257900011|ref|ZP_05679664.1| transcriptional regulator [Enterococcus faecium Com15] gi|257837923|gb|EEV62997.1| transcriptional regulator [Enterococcus faecium Com15] Length = 222 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 1 MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D V + + DFE G + GA+ ++ KP + + + L + Sbjct: 60 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119 Query: 121 QK 122 K Sbjct: 120 SK 121 >gi|257888948|ref|ZP_05668601.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257893831|ref|ZP_05673484.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|293378616|ref|ZP_06624776.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|257825004|gb|EEV51934.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257830210|gb|EEV56817.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|292642747|gb|EFF60897.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 222 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 1 MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D V + + DFE G + GA+ ++ KP + + + L + Sbjct: 60 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119 Query: 121 QK 122 K Sbjct: 120 SK 121 >gi|256015256|ref|YP_003105265.1| transcriptional regulatory protein OmpR, putative [Brucella microti CCM 4915] gi|255997916|gb|ACU49603.1| transcriptional regulatory protein OmpR, putative [Brucella microti CCM 4915] Length = 238 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R + G V A + E + + + +++D + Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G +E VR + V + L D I G GA+ ++ KPF+ L +R Sbjct: 60 GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116 Query: 116 ELPQM-QKSKDENQFLDAI 133 + + + ++ + L I Sbjct: 117 AVLRRFEGNRSPQRALTQI 135 >gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 248 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 23 MK-ILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 81 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 Query: 121 Q 121 Sbjct: 140 H 140 >gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU] gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter baumannii 1656-2] gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 319 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L+V+ +R+ + G+ V A + E E + +V+D + + Sbjct: 2 RALIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPY-DAIVLDLGLPKLDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L + + +AG AGA+ +L KPF+ E L +R L + Sbjct: 61 TVLERWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRR 118 >gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] Length = 233 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+V+ + K+ + G+ + + +A + K + +++D + G+ F Sbjct: 6 LLVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLK-RSFDLILLDIMLPGIDGFE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + D+ + L + + + G G + +++KPF+ L +R + + Sbjct: 65 VCRRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRD 124 Query: 122 KSKDE--NQFLDA 132 + + + L A Sbjct: 125 RRQRAGLQEVLSA 137 >gi|307133596|dbj|BAJ19085.1| GppX [Tannerella forsythia] Length = 710 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+++ +H + LF D + V A + E E +L+P+ ++ D M G+ Sbjct: 461 RLLVIEDNHDIAAYIGSLFADR-YAVSYAANGKEGMEKAL-DLVPDLIITDLMMPGMDGL 518 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR + + + + ++ E+ I G AGA++++ KPFN + LR + +L Sbjct: 519 EVCRQVRGNEIINHIPIIVVTAKITEEERIKGLEAGADAYISKPFNADELRTRVEKLLDR 578 Query: 121 Q-KSKDE 126 + +D+ Sbjct: 579 HLRLRDK 585 >gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R++ G+ F A+ EA + EK + ++ D M + Sbjct: 1 MFQILVVEDDASLRRLMSAALKQNGYQPFTASDGIEALDMLEKTN-IDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + + + FE G AG + +++KP + + + L + Sbjct: 60 GYELTRQLRNANFQMPIIMVTAKESFEDKKIGFDAGTDDYMVKPIDINEMILRVGALLKR 119 Query: 121 QKSKDE 126 K E Sbjct: 120 SKLASE 125 >gi|293371462|ref|ZP_06617885.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292633565|gb|EFF52125.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1292 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ + V ++ EA E P ++ D M + Sbjct: 1027 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1084 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1085 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1144 Query: 120 MQKSKD 125 + Sbjct: 1145 NRALLR 1150 >gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei 87.22] gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces scabiei 87.22] Length = 1424 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + E + +++D M + Sbjct: 1304 RTVLVVDDDARNLFALSGMLELHGFQVLHADNGRRGIEMLLAHPDISLVLMDVMMPEMDG 1363 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R MP ++ + + + +GAN ++ KP + L +R Sbjct: 1364 YSATSEIRSMPQYAELPIIAVTAKAMPGDQEKSLASGANDYVTKPVDTNDLIGRVRRWL 1422 Score = 43.6 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 33/131 (25%), Gaps = 24/131 (18%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDF------G------FMVFEATSVCEAREFCEKELLPNY 49 LL+V+ R + + G + A EA E + Sbjct: 1144 RRLLVVEDRP--RGLLTLVAERAVADLAPGDDPPGAIDIITAIGAQEAASMLAAEPC-HC 1200 Query: 50 LVIDESMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGAN----SFLLK 103 +V++ M + + V V R A FL Sbjct: 1201 VVLELGMPDGEGARLLEAMEGDSALASVPVLVHTGHRVDLAQEQTLRTRAEGRPLDFLS- 1259 Query: 104 PFNRETLRFAM 114 + + LR + Sbjct: 1260 --SLDELRERI 1268 >gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + + GF F + KE P+ +++D + Sbjct: 3 KKILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQ-WTKENCPDLIILDVMLPNKDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R + + + + ++ I G GA+ ++ KPF+ L ++ + + Sbjct: 62 FEICREIRS---FSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|168178399|ref|ZP_02613063.1| regulatory protein VanR [Clostridium botulinum NCTC 2916] gi|182670659|gb|EDT82633.1| regulatory protein VanR [Clostridium botulinum NCTC 2916] gi|322805312|emb|CBZ02876.1| two component transcriptional regulator, winged helix family [Clostridium botulinum H04402 065] Length = 236 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLVD +R + + + EA + +A E + +++D M + Sbjct: 1 MYNILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNTL-HENEIHLILLDVMMPIMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++V + +L + + + G G + ++ KPFN L ++ + Sbjct: 60 GIEVAQKIR-TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALRR 118 >gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + V + +A + + ++D + + F Sbjct: 4 NILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSY-DLAILDVMLPDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + L + I G GA+ ++ KPF L ++ + Sbjct: 63 SICRTIRQNYTW---PIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRR 119 Query: 121 QKSKDENQFLDAI 133 K + Q + Sbjct: 120 YKRYNVQQKAKEL 132 >gi|256059315|ref|ZP_05449517.1| Probable transcriptional regulator ycf27 [Brucella neotomae 5K33] gi|261323274|ref|ZP_05962471.1| two-component system response regulator [Brucella neotomae 5K33] gi|261299254|gb|EEY02751.1| two-component system response regulator [Brucella neotomae 5K33] Length = 238 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 10/139 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R + G V A + E + + + +++D + Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G +E VR L + V + L D I G GA+ ++ KPF+ L +R Sbjct: 60 GKSGIEICQDVR---LTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116 Query: 116 ELPQM-QKSKDENQFLDAI 133 + + + ++ + L I Sbjct: 117 AVLRRFEGNRSPQRALTQI 135 >gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 224 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ V + + + V A E + E + +V+D + Sbjct: 2 RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLAL-EKPFDLVVLDWMLPKKDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + L + E ++AG +G++ +L KPF L +R L + + Sbjct: 61 SVLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 123 S 123 Sbjct: 121 L 121 >gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIY-DAILLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRDERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTKQTI 132 >gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + R GF V A + E + L++D + G Sbjct: 1 MSKILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDY-DLLILDLMLPGTD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFDICRQVR---DVKNTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QM 120 Sbjct: 117 AR 118 >gi|119490861|ref|ZP_01623144.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106] gi|119453679|gb|EAW34838.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106] Length = 1161 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 7/133 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +++L+VD + +R+ ++ F V A + E E K P ++ D M Sbjct: 804 NTILVVDDNPDLRRYLSNILKPAKFHVVMARNGAEGFEQA-KTYRPEVIITDLMMPVVSG 862 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ I +R+ + L + D + I G GA++++ KPFN L +R L Sbjct: 863 LDLIRMIREDVQLRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELLAEVRNL-- 920 Query: 120 MQKSKDENQFLDA 132 ++ EN+ A Sbjct: 921 --RALKENERRVA 931 Score = 98.3 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 13/143 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + F + V A S +A E +E ++ D+ M + Sbjct: 10 KILVVDDEPDNLDLLYRTFYRA-YKVLRADSAPQALEILAQEEDVAVIISDQRMPQMSGT 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP--- 118 D L D E ++ +G ++ KP+ E L+ + + Sbjct: 69 ELLSVAATQYPDAIRILLTGYTDVEDLVEAINSGQVFKYVTKPWEAEELKVIVNQALETH 128 Query: 119 --------QMQKSKDENQFLDAI 133 +++++ + L+A+ Sbjct: 129 NVLKTRTEELKRALQQESLLNAV 151 >gi|187925557|ref|YP_001897199.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716751|gb|ACD17975.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 246 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +VR + GF + E+E P+ +V+D M Sbjct: 5 VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V ++ I G GA+ +L KPF+ L + + + + Sbjct: 64 ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121 >gi|159897113|ref|YP_001543360.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890152|gb|ABX03232.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] Length = 250 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + ++ + G+ A + +++D + Sbjct: 5 THILVVEDDPAIGRLLLMHLREAGWQAILANTGMTGLRLW-ASDCFQIVLLDVMLPDLSG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R ++V + L + + ++ G GA+ +L KPF++ L ++ L Q Sbjct: 64 WELCQQLRAE---SNVPILMLTAKASDDDVVRGLNLGADDYLTKPFSQAQLIARVQRLIQ 120 Query: 120 MQKSKDENQFLDAI 133 Q + L ++ Sbjct: 121 RQALLEPAPRLPSL 134 >gi|91785406|ref|YP_560612.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689360|gb|ABE32560.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 246 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +VR + GF + E+E P+ +V+D M Sbjct: 5 VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V ++ I G GA+ +L KPF+ L + + + + Sbjct: 64 ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121 >gi|116623300|ref|YP_825456.1| two component sigma54-specific Fis family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226462|gb|ABJ85171.1| two component, sigma54 specific, transcriptional regulator, Fis family [Candidatus Solibacter usitatus Ellin6076] Length = 454 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +VR F+ G+ EA E + + ++D M G+ Sbjct: 16 RILIVDDELVVRDSLGKWFSSEGYSARPVGGAREALE-VIQHGEFDIALLDIKMPGMDGM 74 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +D+ + + E + + GA ++ KP + + L + + ++ Sbjct: 75 ELQARLREADSDLTIIMMTGYSSVETAVQALKQGAYDYITKPVDPDELSHLVSNALEHKR 134 Query: 123 SKDENQFLDA 132 ++ E L Sbjct: 135 ARREVDRLRE 144 >gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1] gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16] gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1] gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ +A + + P+ +++D + G+ Sbjct: 4 KILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNR-INPDLVLLDLMLPGMDGI 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + V + L + D ++AG AGA+ ++ KPF + L + + Sbjct: 63 EICRRIRQ---TSVVPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARLRH 119 Query: 121 QKSKDENQFLDA 132 +++ E + L A Sbjct: 120 LETQAE-EVLKA 130 >gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + V + + V + + EA + C + ++D + V F Sbjct: 33 NILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALD-CIASTKIDLAILDIMLPDVDGF 91 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++Q+ V L + ++ I G GA+ ++ KPFN L ++ + Sbjct: 92 -QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRRYT 150 Query: 123 SKDE 126 +E Sbjct: 151 QYNE 154 >gi|186685002|ref|YP_001868198.1| AraC family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467454|gb|ACC83255.1| two component transcriptional regulator, AraC family [Nostoc punctiforme PCC 73102] Length = 289 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + R + + GF A + +E LP+ ++ D M + Sbjct: 7 KKILVIEDDAVTRNLFLEVLEAQGFDTIGAEDGVAGIQKA-QEHLPDLVICDIQMPDMDG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +A +RQ P + +L + G +GA+ +L KP + E A+ + Sbjct: 66 YTVLARLRQDPHTAIIPFIFLTGSNTQTDVRKGMESGADDYLTKPSSIEDFLRAIAVRLE 125 Query: 120 MQ 121 Q Sbjct: 126 KQ 127 >gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4] gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ V +A + EA + + +V+D M + Sbjct: 1 MK-ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + VR+ + + L + I G GA+ ++ KPFN + ++ L Sbjct: 60 GNQVVKEVRKEM---QLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLL 116 Query: 119 QMQ----KSKDENQF 129 + S+++N+ Sbjct: 117 RRSNYMTNSQEQNKL 131 >gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 257 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 17/139 (12%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------------LLPNY 49 +LLV+ ++R+ D GF V A + A E + Sbjct: 19 KVLLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISL 78 Query: 50 LVIDESMEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNR 107 +++D + G+ VR G D+ + L + + G GA+ +L KPF Sbjct: 79 IILDLMLPGMNGLDLCRLVRHQ--GIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGI 136 Query: 108 ETLRFAMRELPQMQKSKDE 126 L R L + +S+D+ Sbjct: 137 RELIARCRALLRRCQSQDK 155 >gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185] gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550] gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550] gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185] gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|320536674|ref|ZP_08036689.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320146496|gb|EFW38097.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 456 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 2/131 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L++D +R+ + D G+ VF A+ + + + ++ D M + Sbjct: 1 MKFSILIIDDEKNIREGLQMALEDEGYEVFTASDGKKGLDIAFSND-IDLVITDLKMPEI 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R V V L E + R GA FL KP + + L +R Q Sbjct: 60 SGEEVLRRISSETPGVPVIVLTGHGTVETAVEAMRTGAYDFLTKPLDLDRLSLLVRRALQ 119 Query: 120 MQKSKDENQFL 130 ++ +++ L Sbjct: 120 NRELVLQHREL 130 >gi|298682184|gb|ADI95252.1| winged helix family two compontent transcriptional regulator [Pseudomonas putida] Length = 246 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF+ L + + + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|302337571|ref|YP_003802777.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301634756|gb|ADK80183.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 236 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 1/128 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD + F GF + A + + LP+ +V+D M + Sbjct: 5 KRIAIVDDEEALTATLAFAFRREGFEIELFHDGAAAWQHF-SQRLPHLIVLDIMMPKMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G V + +L D + G +G + +L KPF+ L +R + + Sbjct: 64 LTLCKLLRSEGMQVPIIFLSSRDDEIDRLLGFESGGDDYLSKPFSVRELLARVRAVLRRS 123 Query: 122 KSKDENQF 129 + + + Sbjct: 124 STVADGEL 131 >gi|299535145|ref|ZP_07048470.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] gi|298729462|gb|EFI70012.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + + + G+ VF+A + EA + ++ + + +++D M + Sbjct: 2 NILICDDDKEIVRAISIYLENEGYQVFKAYNGIEAIDLI-RDHVIHLIIMDIMMPKMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 61 TATMKIRQDNM-IPLIMLSAKSEDYDKILGLNIGADDYMAKPFNPLELVARVKSQLRRYT 119 Query: 123 SKDENQFLDAI 133 + + A+ Sbjct: 120 TFGSLERSSAV 130 >gi|291287959|ref|YP_003504775.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290885119|gb|ADD68819.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 233 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++++D + ++ + + ++V T+ EA E E P+ +++D M + Sbjct: 1 MKTRIMIIDDDSKLNRMLNKYLSQYAYIVDSYTNPLEAIEALE-NDEPSIIILDVMMPHI 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R++ +DV + L D IAG +G + ++ KPF L + + Sbjct: 60 NGFETCKRIRKI---SDVPIIMLTARGDVSDRIAGLESGVDDYMSKPFEPRELVARISAI 116 Query: 118 PQMQKSK 124 + + + Sbjct: 117 LKRTERQ 123 >gi|148273675|ref|YP_001223236.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831605|emb|CAN02573.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++LV+ + + L G+ V A +K+ + +++D + G Sbjct: 1 MTRIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVASFDKDGA-DLILLDLMLPGLP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R V + L + ++ G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCREIRTRSA---VPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|116073496|ref|ZP_01470758.1| two-component response regulator [Synechococcus sp. RS9916] gi|116068801|gb|EAU74553.1| two-component response regulator [Synechococcus sp. RS9916] Length = 244 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 48/121 (39%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ R + G+ V A+ + P+ +V+D ++ Sbjct: 10 RVLVVDDETKLTELLRLELDVEGYDVDVASDGATGLVKARSQPSPDLIVLDWNLPDFSGV 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + L D + AG + +L+KPF+ E L +R + + + Sbjct: 70 DICQRIRRGGVTTPILMLTGHDDVADRVTALDAGVDDYLIKPFSIEELMARLRAMQRRAQ 129 Query: 123 S 123 S Sbjct: 130 S 130 >gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 303 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD S + G A +A +K L P+ +++D M G+ F Sbjct: 11 VLIVDDSPDTLGMLNEALESTGMTTLVALEGKQALTIAQK-LTPDVILLDAIMPGMDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QM 120 ++ P ++ V ++ D + ++ G AG +L KP N + L + Sbjct: 70 TCEKLKANPSLKNIPVIFMTGLSDTDSIVKGFAAGGVDYLTKPINPKELVARINAHLINA 129 Query: 121 QKSKDENQFLDA 132 + + Q LD+ Sbjct: 130 RTALSAQQALDS 141 >gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 233 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + ++ F A + PN +++D + G+ Sbjct: 5 QKILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDT-FEPNLVLLDLMLPGIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + L + + + G GA+ ++ KPF+ + L ++ + + Sbjct: 64 YQVCREIR---TKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLR 120 Query: 120 MQKSKDEN 127 K + + Sbjct: 121 RYKPQVQE 128 >gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 319 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|167588835|ref|ZP_02381223.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 246 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E P+ +V+D M G Sbjct: 7 VLIVDDDRGIRELIADYLEKNGMRVSLAANGRE-MRGVLDSGAPDLIVLDLMMPGEDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRELR-VGKFRAVPVLMLTARGEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRT 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1467 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + + + + D F ++ A E + P+ +V D+ M + Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + V L + + E GAN++++KPF+++ L + +L Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 Query: 121 QKSKDE 126 +K E Sbjct: 1330 RKLFRE 1335 >gi|108758444|ref|YP_631647.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK 1622] gi|108462324|gb|ABF87509.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK 1622] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + + R + G +V + +A + E+ + +++D ++ G+ Sbjct: 2 RLLLVEDEERMANLLRRGLGEEGHLVDTCRTAEDALDQA-GEVAYDAIILDWALPGMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V L + + G RAGA+ +L+KPF E L + L + + Sbjct: 61 ALLRRWRERGLMTPVLMLTARGTVGERVTGLRAGADDYLVKPFAFEELLARLEALHRRSE 120 Query: 123 SKDE 126 + + Sbjct: 121 GQTQ 124 >gi|332160894|ref|YP_004297471.1| two-component regulatory protein response regulator KdpE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604799|emb|CBY26297.1| DNA-binding response regulator KdpE [Yersinia enterocolitica subsp. palearctica Y11] gi|325665124|gb|ADZ41768.1| two-component regulatory protein response regulator KdpE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862950|emb|CBX73085.1| KDP operon transcriptional regulatory protein kdpE [Yersinia enterocolitica W22703] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R+ R G+ VFE+ ++ P+ +++D + Sbjct: 6 TNILIVEDEKEIRRFVRIALESEGWRVFESETLQRGLIEAGT-RKPDLIILDLGLPDGDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + + + L E +A AGA+ +L KPF L +R + Sbjct: 65 LT-YIQDLRQWSSIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH 123 >gi|312958365|ref|ZP_07772886.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311287429|gb|EFQ65989.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 246 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + FN G+ + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQ-MDRLLGREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 TACKRLRGANNQTPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129 >gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + R GF V A + E +E + +V+D + G+ Sbjct: 3 QRILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLE-FAREAAHDLVVLDLMLPGIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ +DV + L + G AGA+ +L+KPF L +R + + Sbjct: 62 IEVA-RRLRAASDVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRRR 120 Query: 122 KSKDENQFL 130 +S ++ L Sbjct: 121 QSAQQSDIL 129 >gi|295093801|emb|CBK82892.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 224 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + F+ G+ V+ AT+ A + EK+ P+ +++D +M + Sbjct: 3 QSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEKK--PDIILLDVNMPDIDG 60 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R + +L ++ I G GA+ +++KPF+ + L + + + Sbjct: 61 FTVCERIRD-YVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRRE 119 Query: 122 K 122 K Sbjct: 120 K 120 >gi|265751167|ref|ZP_06087230.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263238063|gb|EEZ23513.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1270 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + R L + + A + EA + EL+P+ ++ D M + Sbjct: 1021 ILVVDDNQDLLDYLRMLLAPR-YQITCALNGKEALDLL-SELMPDLVISDVMMPVMDGME 1078 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q + + V L +V+ + G GA+ ++ KPF+ + ++ + L + Sbjct: 1079 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLLSNR 1138 Query: 122 KSKD 125 + Sbjct: 1139 ERMK 1142 >gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD H + ++ + G+ A+ EA +++D M + Sbjct: 1 MK-ILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTNPDIGLIILDIMMPEMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ V + L + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-TEVLKEVRKDNPVPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRR 118 Query: 121 QKS 123 ++ Sbjct: 119 AQN 121 >gi|237718881|ref|ZP_04549362.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451659|gb|EEO57450.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1331 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + +R++ ++F + V A + E E E +P+ ++ D M + Sbjct: 1084 KILIVEDNDSLREMLVNIFKSL-YTVITAVNGKEGLEKTCSE-MPHIVISDIIMPEMSGT 1141 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + E + G + GA+ ++ KPFN L L Sbjct: 1142 ELCLAIKQNFDTCHIPVVLLTAKTAIEHNLEGLKMGADDYITKPFNINILLSRCNNLVNN 1201 Query: 121 QKSKDE 126 + E Sbjct: 1202 RIMLQE 1207 >gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1] gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + V A A E P+ +++D + + Sbjct: 2 MPRVLVVDDEPQLARLLVINLKARKYDVDCAQDGGTALETVAT-CRPDAVLLDLGLPDMD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++Q+ + V V + E+ I AGA+ ++ KPF+ + L + + + Sbjct: 61 G-IEVIKQLRGWSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVIRR 119 >gi|91216473|ref|ZP_01253439.1| two-component system, transcriptional regulatory protein [Psychroflexus torquis ATCC 700755] gi|91185267|gb|EAS71644.1| two-component system, transcriptional regulatory protein [Psychroflexus torquis ATCC 700755] Length = 240 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + + V A + E E +K + ++D M Sbjct: 6 KKILLVEDDPNFGIVLKDYLSMNSYDVTHAKNGMEGFEKFKKGNY-DLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F D+ + +L + + ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIRAKNEDIPIIFLTAKAMKDDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124 Query: 122 KS 123 S Sbjct: 125 NS 126 >gi|37522691|ref|NP_926068.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35213693|dbj|BAC91063.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 358 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + L G+ + A+S E K P+ L++D M G+ Sbjct: 7 RILVVDDLPDNIALVQFLLASEGYEIETASSGAECLARVYKNS-PDLLLLDVMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + D + G AGA+ F+ KP + L +R L ++ Sbjct: 66 EVTRRLKSDGHLPFLPILLVTA-SDRPSAVLGLDAGADEFIRKPIEPDELLARVRSLLRL 124 Query: 121 QKSKDENQFLD 131 ++S E + Sbjct: 125 KRSISERDNIA 135 >gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 266 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + V D + V + E E+ + LV+D + GV Sbjct: 24 KRILLVEDDVGIANVLAMHLRDERYEVVHSADGAEGLRLLEQGGW-DALVLDLMLPGVDG 82 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + I G GA+ +L KPF+ L ++ L + Sbjct: 83 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 142 Query: 122 KSKDENQFLDA 132 ++ + DA Sbjct: 143 EAMARDVRADA 153 >gi|312887229|ref|ZP_07746833.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300541|gb|EFQ77606.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1477 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 9/133 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R+ + + V EA E + LP+ +V D M + Sbjct: 1217 TVLIVEDNTDLRRFLYSQLS-VNYRVIEAADGEEGLRIAQAS-LPDLVVSDVMMPNMDGI 1274 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ L + + V L + + I G + GA+ ++ KPF+ + + + L + Sbjct: 1275 QMLDQLKNNILTSHIPVILLTAKSSVDNQIEGLKYGADFYITKPFHTDFIMACIESLIKQ 1334 Query: 121 QKSKDENQFLDAI 133 +K Q ++I Sbjct: 1335 RK-----QLFESI 1342 >gi|297243684|ref|ZP_06927615.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] gi|296888435|gb|EFH27176.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] Length = 250 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A A E +L P+ +++D + + Sbjct: 12 RTILVVEDEPDLATAIAQRITAQGWRARVAADGASAVRAAE-QLKPDLIIMDVMLPIMDG 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + V + L I G AGA+ ++ KPF+ L L + Sbjct: 71 IEATRRIISKMP-VPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRV 129 Query: 122 KSKDE 126 + + Sbjct: 130 ERASQ 134 >gi|253988926|ref|YP_003040282.1| two-component response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780376|emb|CAQ83537.1| two-component response regulator [Photorhabdus asymbiotica] Length = 222 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + + + GF V A+ A + + E L++D S+ + Sbjct: 2 RLLLVEDHPELLHWLQKALSSTGFAVDVASDGIVADQLLQTENY-ALLILDVSLPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR G ++ V L + D + G +GA+ +L KPF+ + L +R L + Sbjct: 61 SLLVRLRKRGQNLPVLLLTAKADVADRVKGLNSGADDYLTKPFDLQELEARIRALLRR 118 >gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 226 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 8/129 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDF--GFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD +R + R G+ V A EA E + P+ L++D + Sbjct: 1 MMKILVVDDESSIRNLIRMQLEMEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPD 58 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 E + R+ D+ V L + + G + GA+ ++ KPFN L ++ Sbjct: 59 TDGYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKN 116 Query: 117 LPQMQKSKD 125 + + K + Sbjct: 117 MARRVKKTE 125 >gi|189463287|ref|ZP_03012072.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136] gi|189430017|gb|EDU99001.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136] Length = 246 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 7/132 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V A S EA + N L++D M + F Sbjct: 23 RILVVDDEEDLCEILKFNLEMEGYTVDTAYSAEEALKL--DITQYNLLLLDVMMGEISGF 80 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + ++ + I G GA+ ++ KPF+ + ++ + + Sbjct: 81 KMARMLKANKDTAEIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 140 Query: 121 Q---KSKDENQF 129 + K+E Q Sbjct: 141 TAGVQIKEEEQL 152 >gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L++D + +V + + G+ V +ATS EA + + E P+ L++D + + Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPDLLILDLMLPDI 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V + L + + ++ G G + ++ KPF+ + L + + Sbjct: 60 SGENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAV 116 Query: 118 PQMQK 122 + K Sbjct: 117 LKRVK 121 >gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R] gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + L GF A A + + +++D + G+ Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNE-IDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKELRSV---STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|148555150|ref|YP_001262732.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148500340|gb|ABQ68594.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 236 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ +R + + G++V A + E E + +++D + G + Sbjct: 5 TILLVEDDPSLRVLTARALQENGYVVRPAATGPEMWIAFNAEP-IDLIILDIMLPGTNGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ +DV + ++ + + G GA+ +L KPF L +R + + Sbjct: 64 ELCRQLRQK---SDVPIIFISAKGSETDRVIGLEIGADDYLAKPFGTRELMARVRAVLRR 120 Query: 121 ---QKSKDENQFLDA 132 + ++++ +A Sbjct: 121 GGMDRQSEQSRRNEA 135 >gi|15807540|ref|NP_296276.1| response regulator [Deinococcus radiodurans R1] gi|6460380|gb|AAF12095.1|AE002084_8 response regulator [Deinococcus radiodurans R1] Length = 344 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + K+ + + G V + EA + K P+ ++ D M + Sbjct: 1 MPRILVVDDDAAIVKLISVILSRAGHEVRSCSHPVEALDLL-KVFTPDLIISDVVMPYMT 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LEF+ VR + + L + + G GA+ +L KPF + L A+ Sbjct: 60 GLEFLEQVRDHENLSAMPFILLSSHAERTDVRRGMNLGADDYLPKPFTPQGLTTAVDARL 119 Query: 119 QMQKSKDENQ 128 + + + Sbjct: 120 RRVGLTAQAE 129 >gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R G V A S + + +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKDEN 127 + + + + Sbjct: 117 RRGERESTD 125 >gi|260062528|ref|YP_003195608.1| two-component system sensor histidine kinase/response regulator [Robiginitalea biformata HTCC2501] gi|88784093|gb|EAR15263.1| two-component system sensor histidine kinase/response [Robiginitalea biformata HTCC2501] Length = 1342 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ VR+ ++ + V EA + E E E++P+ ++ D M +E Sbjct: 1095 ILVVEDHREVRQFLASVWKGK-YQVLEAENGAEGVEKAL-EIVPDLIISDVRMPVRDGIE 1152 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L E + G ++GA+ F+ KPF L ++ L + Sbjct: 1153 LCNTLKTDQRTSHIPIILLTAGSGEEHELKGLQSGADDFVTKPFKLRLLERRVQNLIDTR 1212 Query: 122 KSKD 125 ++ Sbjct: 1213 RALR 1216 >gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 240 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L V+ + R+ G+ V A + +A ++ E +++++D + Sbjct: 5 KQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYL-SEQAFDFIILDVGLPDQNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ + +L D + G GA+ + KPF+ + ++ + + Sbjct: 64 FEVCKQLRQK---YQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWR 120 Query: 120 MQKSKDEN 127 + + +N Sbjct: 121 RMEIQAQN 128 >gi|237799587|ref|ZP_04588048.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022443|gb|EGI02500.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119 Query: 121 QK 122 + Sbjct: 120 AQ 121 >gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676] gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKLNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|77456488|ref|YP_345993.1| osmolarity response regulator [Pseudomonas fluorescens Pf0-1] gi|77380491|gb|ABA72004.1| DNA-binding response regulator [Pseudomonas fluorescens Pf0-1] Length = 246 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQ-MDRLLSREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 TACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|332711348|ref|ZP_08431280.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L] gi|332349897|gb|EGJ29505.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L] Length = 579 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ VR+ L + GF V A + K +P+ ++ D M + Sbjct: 2 MRKILVIEDEEFVRENIIELLDAEGFDVIGAENGRVGVNLA-KGTIPDLIICDVMMPEMD 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ + V +L + G GA+ ++ KPF R L ++ Sbjct: 61 GYSVLTSLRQDSMMATVPFIFLTAKAAKNDFRQGMELGADDYITKPFTRAELLGSIASRL 120 Query: 119 QMQKS 123 + + + Sbjct: 121 KKKAA 125 >gi|300865282|ref|ZP_07110096.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300336755|emb|CBN55246.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 663 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 51/135 (37%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + +V ++ G+ V + A P+ +++D M Sbjct: 12 NILIVDDTPENLQVLSATLSESGYKVRGVINGKMAVRAARSAP-PDLILLDIRMPDTNGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V ++ + + + G ++ KPF E + + + Sbjct: 71 EVCEELKADSQTSKIPVIFISALDEVLDKVKAFQVGGEDYITKPFQVEEVVARVEHQLTI 130 Query: 121 QKSKD----ENQFLD 131 Q+ + +N+ L Sbjct: 131 QRLQKQLIQQNEQLQ 145 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 18/142 (12%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + R + L GF V EA + +A + P+ +++D M + Sbjct: 429 RILVVDDTQENRLLLVKLLQPIGFEVLEAENGEQALTLWDS-WQPHLILLDTRMPVIDGM 487 Query: 61 EFIAHVRQMPLGT---------------DVFVYYLLMEVDFEKMIAGARAGANSFLLKPF 105 E +R + L E+ AG + F+ KPF Sbjct: 488 EVAIQIRAKEREKQEKSLINHQSPINSYHTVIIALTASAFEERRDEIIAAGCDDFVRKPF 547 Query: 106 NRETLRFAMRELPQMQKSKDEN 127 + + M E ++ ++ Sbjct: 548 QEQVIFEKMTEFLGVRYIYEQL 569 >gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 228 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ V + + + G+ A + + ++ D + + Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L + G AGA+ +++KPF+ L ++ L + Sbjct: 60 GFELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119 >gi|293572888|ref|ZP_06683838.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|291607016|gb|EFF36388.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] Length = 222 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 1 MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLET-TRIELIITDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D V + + DFE G + GA+ ++ KP + + + L + Sbjct: 60 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119 Query: 121 QK 122 K Sbjct: 120 SK 121 >gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 231 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+ D + + GF V +A EA + E + +++D M G+ Sbjct: 1 MQSILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLE-NNQVDLMIVDVMMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRTTLKVRE-TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118 >gi|189461492|ref|ZP_03010277.1| hypothetical protein BACCOP_02151 [Bacteroides coprocola DSM 17136] gi|189431826|gb|EDV00811.1| hypothetical protein BACCOP_02151 [Bacteroides coprocola DSM 17136] Length = 1373 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LL+V+ +R R F + + V + + EA ++ P+ ++ D M G Sbjct: 1096 TLLIVEDHEELRYYLRKTFEHY-YRVIDVANGKEALDYL-SNEYPDLILSDVMMPGTQGD 1153 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E V++ P + L + +++ ++ G + GA+ ++ KPF+ E L+ +R + Sbjct: 1154 ELCQMVKENPDTAGIPFILLTAKTNYDAVVEGLKKGADDYIPKPFSTEILKLKVRGFIEN 1213 Query: 121 QKSKDENQFLDAI 133 + + + A+ Sbjct: 1214 RNRQRDFFMRQAL 1226 >gi|167945734|ref|ZP_02532808.1| sensor histidine kinase with ATPase domain, two fused [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 415 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + I ++V L FG +V A A +E + +++D M + Sbjct: 253 KVLLVEDNPINQQVALELLQSFGLLVLVAEDGRAALRRL-QESAFDLVLMDVQMPLMDGY 311 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ P + V + AG + +L KP + L +R Sbjct: 312 ETTRQIRQQPELQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHWL 369 Score = 89.1 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF--------CEKELLPNYLVIDE 54 +LLVD + +VR V + F F V + EA E K +++D Sbjct: 102 RVLLVDDNPMVRTVLADMLRSFSFEVEVGANAAEAYELLMGAGAVGLAKPKPFQLVLMDW 161 Query: 55 SME--GVLEFIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 M ++ + H++Q + + E M AG ++ LLKP N L Sbjct: 162 HMPPVNGIDAVQHIKQELALVQQPKMILVTAFGREELMQQSQAAGLDAVLLKPANPSLLF 221 Query: 112 FAMRELPQMQKSKDE 126 + + + E Sbjct: 222 DTIMSVFKESGRGRE 236 >gi|113477574|ref|YP_723635.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] gi|110168622|gb|ABG53162.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 440 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + V +D F V AT A K LP+ +++D M G+ F Sbjct: 7 ILVVDDTPANLAVLSEALSDADFEVAIATDGELAITQA-KLSLPSLILLDVMMPGIDGFE 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + ++ + ++ D + G GA ++ KPF L ++ ++ Sbjct: 66 TCRRFKACNITKNIPIIFMTALSDCIDKVKGLSLGAVDYVTKPFQEAELIARVKTQLKLY 125 Query: 122 KSKDENQF 129 + + Sbjct: 126 HLTENLEQ 133 >gi|309792183|ref|ZP_07686655.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Oscillochloris trichoides DG6] gi|308225724|gb|EFO79480.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Oscillochloris trichoides DG6] Length = 376 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 8/139 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ +R G+ A + E ++E P+ ++ D +M + Sbjct: 1 MAKILLIEDEPTIRDEVLDWLQFEGYEALGAPNGRLGLELIQREH-PDLILCDIAMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + VR + + +L D E + G GA+ +L KPF+ L +R Sbjct: 60 GHEVLLEVRASMRFSTIPFVFLTASADREAIRKGMDMGADDYLTKPFSHTELLNTVRSRL 119 Query: 119 QMQKSKDEN-----QFLDA 132 + ++ ++E Q L A Sbjct: 120 RKKEIQEEQMHNRLQMLAA 138 >gi|308070352|ref|YP_003871957.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305859631|gb|ADM71419.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 232 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VRK+ + + G +V +A + EA E + +++D ME + + Sbjct: 5 RVLVVDDERTVRKLIKTVLEADGMVVLQAENGTEAMRMI-SEGPFDLVLLDIMMEDIDGY 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +G + +L + + I G GA++++ KPF+ L ++ + + Sbjct: 64 DVLGQSRNMGIHTPIIFLSGKKEDTDQIIGFGLGADAYITKPFSPPVLCAQVKNQIKRYR 123 Query: 123 SKDENQFLDA 132 E++ + Sbjct: 124 QLQESKQQAS 133 >gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 239 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + K+ + GF A+ A E + LV+D M G+ Sbjct: 6 QRILVVDDEKELAKMICDYLSAMGFTSESASDGPRAL-RLIGEKEWDLLVLDVMMPGLDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ + + +L + I G G + ++ KPF+ + L +R + + Sbjct: 65 FDVA-RKVRADRGLPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLRRS 123 Query: 122 KS 123 S Sbjct: 124 AS 125 >gi|282895905|ref|ZP_06303945.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281199150|gb|EFA74019.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 369 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + R L G+ + + A + + P+ +++D M + Sbjct: 11 RILVVDDIRDNLILVRTLLESEGYAIDSVSDGATALQKTVQSP-PDLILLDVMMPEMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + + D ++ G AGA+ F+ KPF+ L +R L ++ Sbjct: 70 EVTRTIRSYTNIGYVPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLRL 128 Query: 121 QKSKDENQFLD 131 + S DE Q + Sbjct: 129 KHSIDEQQKMS 139 >gi|254712298|ref|ZP_05174109.1| Probable transcriptional regulator ycf27 [Brucella ceti M644/93/1] gi|254715370|ref|ZP_05177181.1| Probable transcriptional regulator ycf27 [Brucella ceti M13/05/1] gi|261217099|ref|ZP_05931380.1| two-component system response regulator [Brucella ceti M13/05/1] gi|261319969|ref|ZP_05959166.1| two component system response regulator [Brucella ceti M644/93/1] gi|260922188|gb|EEX88756.1| two-component system response regulator [Brucella ceti M13/05/1] gi|261292659|gb|EEX96155.1| two component system response regulator [Brucella ceti M644/93/1] Length = 238 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R + G V A + E + + + +++D + Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEILDVLSRTP-IDLVILDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G +E VR + V + L D I G GA+ ++ KPF+ L +R Sbjct: 60 GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116 Query: 116 ELPQM-QKSKDENQFLDAI 133 + + + ++ + L I Sbjct: 117 AVLRRFEGNRSPQRALTQI 135 >gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273] gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273] Length = 225 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium fredii NGR234] gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium fredii NGR234] Length = 227 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ GF V EA E +E LP+ L++D + G + Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EIRLQERLPDLLILDWMLPGVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 63 ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 121 QKSK 124 K + Sbjct: 123 AKPE 126 >gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 253 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 L+VD + V F V A + +A +E+ P+ +V+D + G+ Sbjct: 19 RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLA-REIDPDVVVLDLGLPGMDGI 77 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +D +V L I G GA+ ++ KPF+ L +R + + Sbjct: 78 EVCRELR---TFSDAYVVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 134 Query: 121 QK 122 + Sbjct: 135 PR 136 >gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 229 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 54/136 (39%), Gaps = 7/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + GF V + + +E + L++D + GV Sbjct: 1 MSRILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEED-FDLLILDLMLPGVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R++ + + + + D I G GA+ ++ KPF+ + ++ Sbjct: 60 GF-EICRKVREAKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMAR 118 Query: 121 QKSK-----DENQFLD 131 + EN+ ++ Sbjct: 119 YERLIGSGMPENEIIE 134 >gi|209523923|ref|ZP_03272475.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209495595|gb|EDZ95898.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 236 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + V A A + + E P+ +++D ++ Sbjct: 4 QKILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFD-EFNPDLVILDVNLPDTTG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F A ++M T VFV L I G GA+ ++ KPF L +R + + Q Sbjct: 63 F-ALCQEMQDRTRVFVLLLTSLTGEADKIKGFELGADDYITKPFGLAELGARVRAILKRQ 121 Query: 122 KSKDENQF 129 +S ++ + Sbjct: 122 RSVEDTEM 129 >gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T] gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T] Length = 228 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + R + ++V A S E + E + +++D + G+ F Sbjct: 2 KILVVEDELKLAEYLRKALTENSYVVDVAHSGTEG-RYLAIEGHYDLVLLDVMLPGLDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R++ V V L E + G +AGA+ +L+KPF L ++ L + Sbjct: 61 -AVLRELRRDKHVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLRR 117 >gi|126658457|ref|ZP_01729605.1| CheY subfamily protein [Cyanothece sp. CCY0110] gi|126620199|gb|EAZ90920.1| CheY subfamily protein [Cyanothece sp. CCY0110] Length = 121 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+V+ S +K+ + G+ V A +A E K+ P+ +V+D M + Sbjct: 1 MRAVLVVEDSPAQQKMIATILKKNGWQVIIAEDGFQALESI-KDSSPDLIVLDIVMPKMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V + + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRIKTNPSTQNVPIVMCSSKGEEFDRYWGIKQGADAYISKPFEDIELIGTIQQLL 119 Query: 119 QM 120 + Sbjct: 120 RQ 121 >gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 234 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + +V + G+ A + + E + +++D + + Sbjct: 1 MSKILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKF-HEDEYDLVLLDVMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R V V L + + E + G GAN ++ KPF + L +R + Sbjct: 60 GLEVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALR 118 >gi|218246324|ref|YP_002371695.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|257059371|ref|YP_003137259.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|218166802|gb|ACK65539.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|256589537|gb|ACV00424.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 374 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD ++ + + G+ V + +A + E P+ +++D M + Sbjct: 11 ILIVDDIPENLQLLFTMLTEQGYEVRRVLNGKQALNAAKIEP-PDIILLDIKMPDLDGYQ 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ V +L D + G ++ KPF + + + ++ Sbjct: 70 VCEKLKSTETTRDIPVIFLSALNDAFDKVKAFEVGGVDYITKPFQLQEVIIRVENQLKLL 129 Query: 122 KSKDE 126 K + + Sbjct: 130 KMQQQ 134 >gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] Length = 231 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + GF V + KE + L++D + G Sbjct: 1 MSKILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDY-DLLILDLMLPGTD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR++ + + + + + I G GA+ ++ KPF+ + ++ Sbjct: 60 GFEICKRVREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHM 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|154492635|ref|ZP_02032261.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC 43184] gi|154086940|gb|EDN85985.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC 43184] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 58/136 (42%), Gaps = 7/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ V A S EA + L++D M + Sbjct: 3 MPKILVVDDEEDLCEILKFNLEIEGYEVDTAFSAEEALKMDIASYQ--LLLLDVMMGEIS 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + +++ D+ + +L + M+ G GA+ ++ KPF+ + ++ + Sbjct: 61 GFKMASILKKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVL 120 Query: 119 QM---QKSKDENQFLD 131 + ++ EN+ L Sbjct: 121 RRTSDKEKVPENECLK 136 >gi|152985847|ref|YP_001347317.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7] gi|150961005|gb|ABR83030.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7] Length = 242 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLVD +R++ + GF V + + R+ +E ++D + Sbjct: 6 RSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEAI-LAILDVMLPDEDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + + L D + G GA+ +L KPF+ L ++ L + Sbjct: 65 FSLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLR 124 Query: 120 MQK 122 + Sbjct: 125 RAQ 127 >gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 222 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + ++ G+MV A A ++ P+ +++D M G+ F Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQR-RRPDLILLDAMMPGMDGFE 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q P +++ V ++ D E ++ G AGA +++KP + + + Sbjct: 72 TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131 Query: 122 KSKDENQ 128 ++ + Sbjct: 132 RTLQSAR 138 >gi|75759827|ref|ZP_00739903.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492685|gb|EAO55825.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 227 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + ++ + G+ +ATS EA + E + + +++D M + Sbjct: 5 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKEFDIILLDVMMPSMD 63 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ ++V + L M+ G GA+ ++ KPF+ L + + Sbjct: 64 GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 120 Query: 119 QMQK 122 + K Sbjct: 121 RRTK 124 >gi|107025470|ref|YP_622981.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|254249878|ref|ZP_04943198.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|105894844|gb|ABF78008.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|124876379|gb|EAY66369.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E R + + P+ +V+D + G Sbjct: 7 VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALD-DGAPDLIVLDLMLPGEDGLT 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10] gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516] gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F] gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola] gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003] gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10] gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516] gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F] gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola] gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004] gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038] gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003] gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 235 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + +R + G+ A + +A ++ P+++++D M + Sbjct: 1 MK-ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQ-QPDFIILDIMMPELD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + +L + + + G GA+ ++ KPF +R ++ + Sbjct: 59 GYKVCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIV 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|313682907|ref|YP_004060645.1| pas/pac sensor protein [Sulfuricurvum kujiense DSM 16994] gi|313155767|gb|ADR34445.1| putative PAS/PAC sensor protein [Sulfuricurvum kujiense DSM 16994] Length = 467 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+VD +V ++ + + A + +A + EK + +++D M Sbjct: 8 TILVVDDEPRNIQVVSNVLKEINECHIIYAVNGEQALQRVEKNE-IDLILLDMMMPLLDG 66 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++ + + + +L + D E +I G AGA ++ KPF R L + Sbjct: 67 LETCKRLKADSRYSSIPIVFLTAKNDEESLIKGFEAGAVDYISKPFLRRELIARVTTHLN 126 Query: 120 MQKSKD 125 ++ ++ Sbjct: 127 LRSAQK 132 >gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+++ V + R + G+ A + ++ D + + Sbjct: 1 MYSILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L + + G AGA+ +++KPF+ L +R L + Sbjct: 60 GFELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLKR 119 Query: 121 Q 121 + Sbjct: 120 K 120 >gi|297568936|ref|YP_003690280.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296924851|gb|ADH85661.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 467 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+ + L + G+ V A A E +E + L+ D M Sbjct: 1 MKRILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDY-DLLISDIRMPPPN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 VR + ++ V + + ++ ++GA ++ KPF + ++ + Sbjct: 60 GLELLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTAL 117 >gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL++ V R + G+ V A + E +++D + G+ Sbjct: 1 MK-LLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMA-TENNFQLIILDVMLPGMN 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ L + L E ++AG +GA+ +L+KPF + L +R L Sbjct: 59 GIAVCKALRQQQLT--TPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621] gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621] gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIY-DAILLDVMMPEMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTQQTI 132 >gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD + ++ + GF +A E +E P+ +++D + G Sbjct: 1 MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAF-RETRPDLVLLDLMLPGA 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ +R V + L + D ++ G +GA+ +++KPF + L MR Sbjct: 60 DGIDVCRQIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRAR 116 Query: 118 PQMQK 122 + + Sbjct: 117 LRRTE 121 >gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 230 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V + + EA + E N +++D M + F Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSE-QFNLILMDIMMPKLDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ T++ + +L + + I G +G + ++ KPF+ L + + + Sbjct: 63 -EAIKRIRRLTNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119 >gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+++ + + F A E E E + +++D + Sbjct: 3 KKILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESE-QFDCILLDVMLPQLNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ ++V + + + ++G AGA+ +++KPF E L +R + + Sbjct: 62 IEVCRRIRK---TSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILR 118 Query: 120 MQKSKDENQFL 130 + +++ L Sbjct: 119 RVQPAQKSKQL 129 >gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 319 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|258655134|ref|YP_003204290.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558359|gb|ACV81301.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + R F V A A E P+ +V+D + + Sbjct: 1 MSRVLLVDDEPQLLRALRINLAARHFDVVTAEDGSGALEAAATHP-PDLVVLDLGLPDLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + T V + L V + AGA+ ++ KPF+ + L +R + + Sbjct: 60 GV-EVIRRLRVWTAVPIIVLSGRVGSSDKVLALDAGADDYVTKPFSLDELFARIRAVTRR 118 >gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 233 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E EK + + +V+D M + Sbjct: 5 TILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEV-HLVVLDIMMPKIDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKIREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRR 120 >gi|166710603|ref|ZP_02241810.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 259 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 28 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 86 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + +S Sbjct: 87 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQS 146 Query: 124 KDEN 127 +E Sbjct: 147 SNEQ 150 >gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ R GF A++ E + + +++D + G+ Sbjct: 1 MKRILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEY-SLILLDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R+M D+ + + + I G GA+ +++KPFN L ++ Sbjct: 60 GF-QLCREMREFLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTAR 118 >gi|116621165|ref|YP_823321.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224327|gb|ABJ83036.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 2384 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + V A + E K + +++D M + Sbjct: 2252 KKVLVVDDDVRNIFALTSVLEQHHLQVVHAENGRAGIETLLKTPDVDGVLMDIMMPEMDG 2311 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ+ + + + + AGA+ ++ KP + + L +R Sbjct: 2312 YETTRAIRQIAEFRTLPIIAVTAKAMKGDRAKCIEAGASDYITKPVDLDQLFSVLRVWLI 2371 Query: 120 MQKSKD 125 + Sbjct: 2372 RSRESQ 2377 Score = 83.7 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 9/123 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ ++ + +D G A A +E P + +D ++ ++ Sbjct: 1986 LLIIEDDVTFARILMDMAHDRGIRALVALRGGTALSLA-REFNPGAITLDINLPDMVGWT 2044 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 + ++ P + V+ + E G GA S+L K +ETL + Sbjct: 2045 ILDRLKHDPATRHIPVHVITG---DENRRRGLGLGAVSYLEKSVTKETLNSAFDTIHRSL 2101 Query: 119 QMQ 121 + + Sbjct: 2102 ERR 2104 Score = 35.2 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 3/80 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LLLV R + + A S EA K + LV+D ++ + Sbjct: 2106 KKLLLVSPDEERRATWQRSLAGPDIEMIAAGSGGEALAVV-KHQYLDGLVLDLNLADIPA 2164 Query: 60 LEFIAHVRQMPLGTDVFVYY 79 L+ V+ + + Sbjct: 2165 LQLAEEVQSATDPQTPPMIF 2184 >gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 787 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ ++ V + V A E+ + + ++ D + + Sbjct: 2 RILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNY-DLILTDVVLPKLDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + + + I G AGA+ +L+KP N L+ +R L + Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRR 118 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD ++ + +G + E + P+ L++D M + Sbjct: 501 NVLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQS-TAPDLLILDVEMPHISGI 559 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR P ++ + +L + E + AG + +++KP L + + Sbjct: 560 ELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLER 619 Query: 121 QKSKD 125 + Sbjct: 620 SRLLQ 624 Score = 40.9 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL+D + + + G + T+ EA + + P+ +V++ G E Sbjct: 376 KLLLIDPDLQLGSQLQQVAYSMGMRWQQITT-LEAAKNFLQTTSPDLVVLNVDEIGQREE 434 Query: 63 IAHVRQM--PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + V L + + A++GA FLLKP + ++ Q Sbjct: 435 TLALMVDLATHTPPIPVLALAVNDRLVDRVTLAQSGARGFLLKPVAASQVWETASQILQF 494 Query: 121 QKSKDEN 127 +S N Sbjct: 495 TRSLKVN 501 >gi|157373328|ref|YP_001471928.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] gi|157315702|gb|ABV34800.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] Length = 120 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ GF V EA++ EA + +K + ++ D +M + Sbjct: 1 MKRILAVDDSASMRQMVGFTLKTAGFDVTEASNGDEALKVAQKGEY-DLVISDVNMPVMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++R +P + L E +K G AGA +++KPFN + L +R++ Sbjct: 60 GLTLIRNLRTLPAYKFTPLLMLTTESGTDKKQEGRSAGATGWIVKPFNPDQLLATVRKVL 119 >gi|126659225|ref|ZP_01730363.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] gi|126619530|gb|EAZ90261.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] Length = 635 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + +V + V A + A +K LP+ +++D M + F Sbjct: 6 ILVVDDNPNNIQVLFQCLKKADYKVLIAQTGESAINQAKK-TLPDLILLDVMMPIMDGFE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ +P D+ V ++ + + + G GA ++ KPF +E L ++ ++ Sbjct: 65 TCSSLKSLPETVDIPVIFMTVLNETFNKVKGFSLGAVDYITKPFIQEELLARVKLHLDLR 124 Query: 122 K----SKDENQFLD 131 + +N+FL Sbjct: 125 HLTKTLEQQNKFLK 138 >gi|104781516|ref|YP_608014.1| two-component response regulator [Pseudomonas entomophila L48] gi|95110503|emb|CAK15211.1| putative two-component response regulator [Pseudomonas entomophila L48] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + + + +V+D M G Sbjct: 7 ILVVDDDREIRELVGNYLKKNGLRTSIVADGRQ-MRAFLENNTVDLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF+ L + + + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|16767325|ref|NP_462940.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415905|ref|YP_152980.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182520|ref|YP_218937.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161505430|ref|YP_001572542.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161617190|ref|YP_001591155.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551449|ref|ZP_02345204.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991591|ref|ZP_02572690.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232999|ref|ZP_02658057.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237683|ref|ZP_02662741.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244188|ref|ZP_02669120.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263040|ref|ZP_02685013.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467400|ref|ZP_02701237.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821593|ref|ZP_02833593.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442670|ref|YP_002043284.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451391|ref|YP_002048063.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472068|ref|ZP_03078052.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736327|ref|YP_002116983.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250942|ref|YP_002148990.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264290|ref|ZP_03164364.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364834|ref|YP_002144471.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245082|ref|YP_002217986.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388103|ref|ZP_03214715.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930324|ref|ZP_03221301.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354363|ref|YP_002228164.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859247|ref|YP_002245898.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585872|ref|YP_002639671.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912204|ref|ZP_04656041.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16422624|gb|AAL22899.1| response reguator in two-component regulatory system with CpxA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130162|gb|AAV79668.1| two-component response regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130153|gb|AAX67856.1| response reguator in two-component regulatory system with CpxA, regulates expression of protein folding and degrading factors (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160866777|gb|ABX23400.1| hypothetical protein SARI_03585 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366554|gb|ABX70322.1| hypothetical protein SPAB_05031 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401333|gb|ACF61555.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409695|gb|ACF69914.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458432|gb|EDX47271.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711829|gb|ACF91050.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630213|gb|EDX48853.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096311|emb|CAR61912.1| two-component response regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214645|gb|ACH52042.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242545|gb|EDY25165.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289336|gb|EDY28701.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939598|gb|ACH76931.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605201|gb|EDZ03746.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320728|gb|EDZ05930.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274144|emb|CAR39155.1| two-component response regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323751|gb|EDZ11590.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330025|gb|EDZ16789.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332758|gb|EDZ19522.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336884|gb|EDZ23648.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341789|gb|EDZ28553.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348222|gb|EDZ34853.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711050|emb|CAR35422.1| two-component response regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470400|gb|ACN48230.1| two-component response regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249176|emb|CBG27037.1| two-component response regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996354|gb|ACY91239.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160567|emb|CBW20097.1| two-component response regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915175|dbj|BAJ39149.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088470|emb|CBY98229.1| probable transcriptional regulator ycf27 OmpR-like protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225352|gb|EFX50410.1| Copper-sensing two-component system response regulator CpxR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613178|gb|EFY10122.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619195|gb|EFY16078.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626061|gb|EFY22873.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626479|gb|EFY23285.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632408|gb|EFY29156.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635110|gb|EFY31831.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642687|gb|EFY39277.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647976|gb|EFY44448.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650726|gb|EFY47127.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652909|gb|EFY49246.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657224|gb|EFY53504.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662288|gb|EFY58503.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666823|gb|EFY62999.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672093|gb|EFY68208.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675815|gb|EFY71887.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681769|gb|EFY77795.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684036|gb|EFY80045.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717018|gb|EFZ08589.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132404|gb|ADX19834.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193308|gb|EFZ78523.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197665|gb|EFZ82798.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200761|gb|EFZ85832.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207234|gb|EFZ92186.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211436|gb|EFZ96277.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218518|gb|EGA03226.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220999|gb|EGA05431.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225975|gb|EGA10194.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231655|gb|EGA15767.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236096|gb|EGA20174.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239482|gb|EGA23531.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243924|gb|EGA27935.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249287|gb|EGA33204.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250470|gb|EGA34353.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258924|gb|EGA42576.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260169|gb|EGA43792.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265288|gb|EGA48785.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270510|gb|EGA53956.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625777|gb|EGE32122.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629490|gb|EGE35833.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990888|gb|AEF09871.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A E + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)] gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)] gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V AT+ + + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDE 126 +E Sbjct: 118 EPEE 121 >gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 234 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ GF +EA +A + ++ + +++D M + F Sbjct: 13 NILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 72 DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 Query: 121 QK 122 + Sbjct: 129 YQ 130 >gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] Length = 250 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R + G+ V A A P+ +V+D + F Sbjct: 15 TVLVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQA-GSRRPDLIVLDVMLPDTDGF 73 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G V +L E I G +G + ++ KPF+ + + +R + + Sbjct: 74 RLTRELRAQ--GVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRR 131 Query: 121 QKS 123 + Sbjct: 132 AGA 134 >gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24] gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24] Length = 1829 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1708 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1767 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M++ + Sbjct: 1768 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1827 >gi|71737625|ref|YP_276201.1| DNA-binding response regulator ColR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558178|gb|AAZ37389.1| DNA-binding response regulator ColR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 227 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119 Query: 121 QK 122 + Sbjct: 120 AQ 121 >gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D +R++ G V A EA E + + P+ +V+D M + F Sbjct: 10 KILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELF-RSVEPDVVVLDVMMPELDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++V V L D I G GA+ +++KPF+ + L ++ + + Sbjct: 69 AVLERIRAQ-SEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRR 125 >gi|315649065|ref|ZP_07902158.1| integral membrane sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315275500|gb|EFU38855.1| integral membrane sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 888 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 LL+VD + KV R L + G+ + T EA E+ + ++ D M + Sbjct: 556 RLLVVDDDPVNLKVIRGLLSGEGYWITVVTQAEEALRLLEQAEW-DLIISDVMMPQMSGY 614 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + ++ + L E + G +GAN +L+KP + L+ +R L ++ Sbjct: 615 ELSRRIRQRYMLAELPILLLTARSQPEDIHMGFMSGANDYLIKPVDHLELKTRVRALLEL 674 Query: 121 QKSKDENQFLDA 132 ++S E ++A Sbjct: 675 KRSIQERLHMEA 686 >gi|315607709|ref|ZP_07882703.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315250645|gb|EFU30640.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1321 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R + + V A + E E +E +P++++ D SM + Sbjct: 1036 TILVVEDNSDLRTFLYSILGR-DYNVIMAENGKEGLEMAIRE-MPDFILTDVSMPVMDGL 1093 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q + + + L + G R G + ++ KPF+ L+ + + Sbjct: 1094 TMVHHIKQNKDISHLPIIILSARASMKDQEQGLREGVHGYITKPFSAAYLKGRIENILAH 1153 Query: 121 QKSKDENQFLDAI 133 QK + + L+ I Sbjct: 1154 QKMY-QQKALEQI 1165 >gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 240 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LL + +R G+ V EA + P+ LV+D M G+ Sbjct: 3 QTVLLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRN-RPDVLVLDVMMPGIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R G V L V+ IAG AGA+ +++KPF+ E + +R L + Sbjct: 62 LQVCRVLRA--EGDRTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|302384799|ref|YP_003820621.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195427|gb|ADL02998.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 237 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ +R+ G+ VF+A E + ++E + ++D M + Sbjct: 6 ILLVEDDKEIREGIEIYLRSQGYEVFQAADGVEGLKVLQREE-IHLAIVDVMMPRMDGIT 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+ D V L + + I G GA+ ++ KPF L + + K Sbjct: 65 MTVKLREAY-DFPVIILSAKSEEVDKIMGLNIGADDYVSKPFTPMELLARVNSQLRRYK 122 >gi|254881220|ref|ZP_05253930.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_3_47FAA] gi|254834013|gb|EET14322.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_3_47FAA] Length = 311 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R R LF+ + + A + E KE +P+ ++ D M + F Sbjct: 51 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKE-IPDLVITDVMMPVMNGF 108 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L D E ++ G GA+ ++LKPFN E LR ++ L Sbjct: 109 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI-- 166 Query: 121 QKSKDENQFL 130 KS+ E + + Sbjct: 167 -KSRTELKRI 175 >gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119] gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119] gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] Length = 219 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+V+ + + G+ V E + +++D + Sbjct: 1 MTNILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKAL-NNDFDLIILDLMLPNIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE VRQ+ + + + D + G GA+ +++KPF E L +R + Sbjct: 60 GLEICRRVRQV---QSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPHKD 123 >gi|170737378|ref|YP_001778638.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819566|gb|ACA94148.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E R + + P+ +V+D + G Sbjct: 7 VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALD-DGAPDLIVLDLMLPGEDGLT 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483] gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ V + + + G+ A + + ++ D + + Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L + G AGA+ +++KPF+ L ++ L + Sbjct: 60 GFELAKEIRKTNPHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119 >gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 221 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + G++V AT A E + + +++D + + Sbjct: 3 KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIILDVMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + + L + E + G + ++ KPF+ L + + + Sbjct: 62 FVVCEIIRKESS---MPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118 Query: 120 MQKSKDEN 127 +EN Sbjct: 119 RANGLEEN 126 >gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4] gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + L GF A ++ + +++D + G+ Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGA-DIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKQLRSRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|88800460|ref|ZP_01116024.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Reinekea sp. MED297] gi|88776790|gb|EAR08001.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Reinekea sp. MED297] Length = 561 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ D + R + R + G V A + EA E P+ +++D M + Sbjct: 6 RILIADDNETDRMILRTIVRKEGHEVLLAANGEEAVHLFETG-RPDLILLDVLMPVMDGV 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + +L D E + +G + FL KP+NR L+ ++ +M Sbjct: 65 RAAEEIRKDTRRAYVPIIFLTSLQDAESLAQCLDSGGDDFLSKPYNRVILKAKIKAFGRM 124 Query: 121 QKSKDENQ 128 + ++ Q Sbjct: 125 RHMHEKLQ 132 >gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD H + ++ + G+ A + EA +++D M + Sbjct: 1 MK-ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I V+++ +D+ + + + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-IDVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 121 QKSK 124 + + Sbjct: 119 SQKQ 122 >gi|308070222|ref|YP_003871827.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305859501|gb|ADM71289.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 266 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD + ++ + V +S E P+ LV+D M G+ Sbjct: 31 MTKIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTN-RPDCLVLDIMMPGID 89 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + Q+ T++ + + + I G G + FL KPFN L ++ + ++ Sbjct: 90 GL-SLLTQLREFTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRL 148 Query: 121 QKS 123 K+ Sbjct: 149 SKA 151 >gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 1081 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ + + G+ + A +A + + E PN +++D M G+ Sbjct: 964 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSES-PNLILMDIQMPGIDGLE 1022 Query: 64 A--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +RQ+P T V + L AGAN ++ KP + L ++E+ Sbjct: 1023 AINRIRQIPTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1079 >gi|283787411|ref|YP_003367276.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282950865|emb|CBG90542.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A E + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268] gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ I+ K + + + V A EA E+ + + + +++D M Sbjct: 2 RILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIY-DLMILDVMMPKLNGY 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ G + + L + E I G GA+ +L KPF++ L + L + Sbjct: 61 QVARQLRKEKNG--LPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRR 118 Query: 121 QKSK 124 Q + Sbjct: 119 QGQE 122 >gi|220909116|ref|YP_002484427.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219865727|gb|ACL46066.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 121 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ S R++ L ++ G V AT EA E + P+ +V+D M + Sbjct: 1 MSKVLVVEDSVPQREMISELLSNSGLTVAVATDGVEAIEQLHI-IQPDIVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P + V V + + G + GA++++ KPF + L +++L Sbjct: 60 GYEVCRQIKSDPKTSHVPVVICSSKSEDFDRYWGKKQGADAYIAKPFQPKELIGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + +D F V A + E + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTKQTI 127 >gi|158335119|ref|YP_001516291.1| response regulator receiver domain-containing protein [Acaryochloris marina MBIC11017] gi|158305360|gb|ABW26977.1| response regulator receiver domain protein, putative [Acaryochloris marina MBIC11017] Length = 595 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LL+VD R + G+ V A S A E +++D M G + Sbjct: 184 TLLVVDDVEANRDMLSRRLQRKGYEVALADSGEAALELMATTD-IALVLLDIMMPGIGGI 242 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ+ ++ V + E ++ GAN ++ KP + ++ + Sbjct: 243 ETLKRIRQIYSQEELPVIMATAKDASENVVEALELGANDYITKPIDLPVALARIQSHLKT 302 Query: 121 QKS--KDENQFLDA 132 +++ Q L++ Sbjct: 303 REASVAARQQLLES 316 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 16 VGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGT 73 + G+ V A E E P+ +++D S+ + ++ Sbjct: 1 MLGRRLKRRGYDVVIAVDGGEGVTKALTE-QPDLILMDMSLPVMNGWEATRTLKAGDQTA 59 Query: 74 DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-QKSKDENQFLDA 132 + + L AG + + KP + + L + L Q Q+ +Q L+A Sbjct: 60 TIPIIALTAHAMVGDREEALAAGCDDYDTKPVDLKRLLQKIETLLQKTQEPSAPSQPLEA 119 Query: 133 I 133 + Sbjct: 120 V 120 >gi|116249380|ref|YP_765221.1| two-component histidine kinase/response regulator motif-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254030|emb|CAK12427.1| putative repetitive protein with two-component sensor and regulator motifs [Rhizobium leguminosarum bv. viciae 3841] Length = 2099 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD + G V AT+ EA + E +++D M G+ + Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + + L + AGA+ +L KP N E L A+R Sbjct: 2040 ETMQVIRSEPRFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 15/139 (10%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ +V L D GF V A +A ++ P + +D + +L Sbjct: 1713 LLVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALALA-QDYRPAAISLDIFLPDMLGWT 1771 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 ++ ++Q P + V + E G GA +F+ KP E L ++ Sbjct: 1772 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAYA 1828 Query: 119 QMQKSK------DENQFLD 131 Q ++ +E + L Sbjct: 1829 QPRRKHLLLVEDNEAERLS 1847 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLV+ + R L + S EA + + +V+D S+ + Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALAALRQNSA-DCVVLDLSLPDMSG 1891 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 F + +R +V V + A + A S ++K + E L Sbjct: 1892 FDVLEQMRDDAEIGEVPVVVFTGRELSAEEDAALHSMARSVVVKGVESPERLLD 1945 >gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ V + + + G+ A + + ++ D + + Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + L + G AGA+ +++KPF+ L ++ L + Sbjct: 60 GFELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119 >gi|87301808|ref|ZP_01084642.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283376|gb|EAQ75331.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 263 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R++ F GF+V A + + + P+ +++D + L Sbjct: 5 ILLIEDDEDMRELVAGHFEHGGFVVETADDGIKG-QALALQASPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + + ++G +GA+ +L KPF+ E L ++ L + Sbjct: 64 LCQRLRRDERTAGIPILMITALGGTKDKVSGFNSGADDYLTKPFDLEELMVRVKALLRR 122 >gi|69244455|ref|ZP_00602871.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257879039|ref|ZP_05658692.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257881663|ref|ZP_05661316.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257890891|ref|ZP_05670544.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|258615327|ref|ZP_05713097.1| two component transcriptional regulator [Enterococcus faecium DO] gi|260558562|ref|ZP_05830758.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|293562842|ref|ZP_06677314.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293568418|ref|ZP_06679738.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294623349|ref|ZP_06702209.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|68196396|gb|EAN10824.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257813267|gb|EEV42025.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257817321|gb|EEV44649.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257827251|gb|EEV53877.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|260075736|gb|EEW64042.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|291588754|gb|EFF20582.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291597243|gb|EFF28434.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291605166|gb|EFF34628.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] Length = 222 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D V + + DFE G + GA+ ++ KP + + + L + Sbjct: 60 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119 Query: 121 QK 122 K Sbjct: 120 SK 121 >gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 227 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L+VD + + + + F V A+ EA + + + + ++D M + Sbjct: 1 MKPSILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLL-QNRVFDLCILDIMMPRL 58 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + V L D +AG GA+ ++ KPF L ++ L + Sbjct: 59 DGMEVLHVLNREQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLR 118 Query: 120 MQKS 123 S Sbjct: 119 RAGS 122 >gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase [Acinetobacter calcoaceticus PHEA-2] Length = 319 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + + ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPIIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|315921776|ref|ZP_07918016.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313695651|gb|EFS32486.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1315 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + + + ++ V A+ EA + + P+ +V D M + Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++++ + + + L D + ++G + GA+++L KPF E L +R + Sbjct: 1118 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177 Query: 121 QKSKDE 126 ++S + Sbjct: 1178 RESIKK 1183 >gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] Length = 226 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + + + + V T +A E +K P+ +++D + G+ Sbjct: 1 MSRILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDK-FKPSLVILDLMLPGMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++R + + + L ++D + G GA+ ++ KPF L + Sbjct: 60 GYEICQNIRIK---STIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQL 116 Query: 119 QMQK 122 + + Sbjct: 117 RRSQ 120 >gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] Length = 230 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 57/137 (41%), Gaps = 11/137 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLV+ +R++ + GF V AT+ EA C + + +++D + Sbjct: 3 KHILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNT-FDLVILDIMIPKLNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE + +R+ + + + + G GA+ ++ KPF+ ++ + + Sbjct: 62 LEVLKIIREQAA---LPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIR 118 Query: 120 M-----QKSKDENQFLD 131 +++ + + L+ Sbjct: 119 RATKYSSQAEQKQEVLE 135 >gi|299146852|ref|ZP_07039920.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298517343|gb|EFI41224.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1315 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + + + ++ V A+ EA + + P+ +V D M + Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++++ + + + L D + ++G + GA+++L KPF E L +R + Sbjct: 1118 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177 Query: 121 QKSKDE 126 ++S + Sbjct: 1178 RESIKK 1183 >gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1295 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G + A EA + + +++D M + Sbjct: 1175 RTVLLVDDDMRNIFALSSVLEEAGLEIVVARDGREALAKLAEHPEIDLVLMDIMMPEMDG 1234 Query: 62 FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + A +R+ P + + L + AGAN +L KP + E L +R Sbjct: 1235 YEAMGEIRRDPARAKLPIIALTAKAMRGDKDKCLAAGANDYLAKPVDPERLLSLLRVWL 1293 Score = 86.0 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + L D G+ A + P+ +++D + G+ Sbjct: 906 KSLLIIEDDSSFASLLLELARDKGYKGLVAEDGETGLHLADY-FRPSGIILDMGLPGISG 964 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +++ P + V+++ ++ + GA FL KP + + L ++ Sbjct: 965 REVMERLKKNPETRHIPVHFISASDPSNEV---MQLGAVGFLTKPVSVDKL----EQVFG 1017 Query: 120 MQKSKDEN 127 + EN Sbjct: 1018 RIEKLAEN 1025 Score = 76.4 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 LL+V+ + R+ R + + G V EA EA E + +++D + + Sbjct: 1028 KRLLVVEDDMVQRQAIRAMVGEGGDIEVVEAADGEEAHRLLGTEH-FDCVILDLGLGDMS 1086 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 F + ++ + V V + A+S ++K Sbjct: 1087 GFDLLTKIKDDQRISQVPVVIYTGREISPDEEERLQQYADSIIIK 1131 >gi|260173505|ref|ZP_05759917.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1273 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + + + ++ V A+ EA + + P+ +V D M + Sbjct: 1017 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1075 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++++ + + + L D + ++G + GA+++L KPF E L +R + Sbjct: 1076 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1135 Query: 121 QKSKDE 126 ++S + Sbjct: 1136 RESIKK 1141 >gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 235 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF V A+ + + V+D M + Sbjct: 1 MHKILLIDDDIELTAMLKEFLCTEGFDVTTASDGVSGAQLALSN-QFDLAVLDVMMPKMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I + + + + V L D G GA+ ++ KP L +R + + Sbjct: 60 G-IETLGLIRKSSQIPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILRR 118 Query: 121 QKSKDE 126 K E Sbjct: 119 AKPTQE 124 >gi|238920098|ref|YP_002933613.1| acetoacetate metabolism regulatory protein AtoC [Edwardsiella ictaluri 93-146] gi|238869668|gb|ACR69379.1| acetoacetate metabolism regulatory protein AtoC, putative [Edwardsiella ictaluri 93-146] Length = 458 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD VR++ F G ++A++ EA + C + P+ +++D M Sbjct: 1 MKSRYRILIVDDEENVRRMLTTAFALQGHETYDASNGEEALQ-CFADAPPDVVLMDIRMP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + A V + + + R+GA +++KPF+ E L +R Sbjct: 60 TMSGIDALKIMRTRQPRTPVILMTAYAEVATAVEALRSGAFDYVIKPFDLEELNLLIRRA 119 Query: 118 PQMQKSKDENQFL 130 Q+Q K E + L Sbjct: 120 LQLQAMKQEIRSL 132 >gi|237723233|ref|ZP_04553714.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447755|gb|EEO53546.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1315 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + + + ++ V A+ EA + + P+ +V D M + Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++++ + + + L D + ++G + GA+++L KPF E L +R + Sbjct: 1118 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177 Query: 121 QKSKDE 126 ++S + Sbjct: 1178 RESIKK 1183 >gi|170681202|ref|YP_001744414.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli SMS-3-5] gi|170518920|gb|ACB17098.1| sigma-54 dependent response regulator AtoC [Escherichia coli SMS-3-5] Length = 461 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRTLQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +R + F V A E R+ +V+D + G LE Sbjct: 7 ILIVDDDREIRDLLARFLERNQFRVTTARDGRETRKAWLAGHY-QIVVLDLMLPGESGLE 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +V + L + I G GA+ ++ KPFN L +R + + Sbjct: 66 LARWLRGQA---NVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRS 122 Query: 122 KSKDENQ 128 E + Sbjct: 123 SEAPETR 129 >gi|160886361|ref|ZP_02067364.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483] gi|293372788|ref|ZP_06619169.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|156108246|gb|EDO09991.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483] gi|292632297|gb|EFF50894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1315 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + + + ++ V A+ EA + + P+ +V D M + Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++++ + + + L D + ++G + GA+++L KPF E L +R + Sbjct: 1118 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177 Query: 121 QKSKDE 126 ++S + Sbjct: 1178 RESIKK 1183 >gi|94263964|ref|ZP_01287766.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455636|gb|EAT05818.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 302 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L VD S + K+ + + + V AT +A + LP+ +++D M + Sbjct: 9 TILAVDDSPMNIKILHDIL-NQDYRVIFATGGADALTIA-ADSLPDLILLDIMMPEMDGY 66 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + ++ + E G GA ++ KP N+ ++ ++ ++ Sbjct: 67 EVCRRLKADPRTQRIPIIFVTAMTEREDEAKGLELGAIDYITKPVNQAVVKARVKNHLEL 126 Query: 121 QKSKD 125 ++ +D Sbjct: 127 KRYQD 131 >gi|291534209|emb|CBL07322.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 231 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M + V+ VR++ + GF + E K +P+ +++D + G Sbjct: 1 MQKIYCVEDDESVRELVIYALQSSGFEAQGFVNAEEFFPVL-KNNVPDLILLDIMLPGID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + VR+ P + L I G GA+ ++ KPF L ++ + Sbjct: 60 GIEILKEVRKNPKTQHTPIIMLTARGSEYDKITGLDNGADDYVTKPFGVMELIARIKAVL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 220 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ ++ + R GF V A + + +++D + L Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPY-DLVLLDLGLPKRDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R G + V + + G AGA+ +L+KPF+ + L MR L + Sbjct: 61 DVLRALRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 Query: 121 QKSKD 125 Q + Sbjct: 119 QSGRS 123 >gi|312113933|ref|YP_004011529.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311219062|gb|ADP70430.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 239 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + G V A EAR + + LV+D M G Sbjct: 5 THILVVDDHKDIRDLLAKFLVKHGMRVTVAADAAEARRHLKAG-AFDLLVLDIMMPGEDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + +L + I G GA+ ++ KPFN L +R + + Sbjct: 64 ISLCRDIR---DSNSAPIIFLTAVAEDTDRIIGLELGADDYVTKPFNPRELLARIRAVIR 120 Query: 120 MQKS 123 +S Sbjct: 121 RAQS 124 >gi|218248993|ref|YP_002374364.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|257062078|ref|YP_003139966.1| response regulator receiver protein [Cyanothece sp. PCC 8802] gi|218169471|gb|ACK68208.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|256592244|gb|ACV03131.1| response regulator receiver protein [Cyanothece sp. PCC 8802] Length = 122 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+V+ + R++ L N GF A S +A + + LP+ +++D M G Sbjct: 1 MPNILVVEDTQSERQLISALLNYAGFTTAAACSAEDAWNWLDTNPLPDLILLDIIMPGET 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ +R P +V + + + + R G + ++ KPF + + Sbjct: 61 GLDLCRKIRSHPQWKEVPILFCSSKAEEFDRFWALRQGGSDYITKPFAPQQFLDTVSRYV 120 Query: 119 Q 119 Q Sbjct: 121 Q 121 >gi|157147296|ref|YP_001454615.1| DNA-binding transcriptional regulator CpxR [Citrobacter koseri ATCC BAA-895] gi|157084501|gb|ABV14179.1| hypothetical protein CKO_03088 [Citrobacter koseri ATCC BAA-895] Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A E + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|95931065|ref|ZP_01313792.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95132874|gb|EAT14546.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 471 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD ++R+ + + G+ V ATS A E + + ++ D M G+ + Sbjct: 5 RILVVDDEAVIREAVKRILEQEGYEVITATSGHTALEKVQIDD-FTVVISDLKMPGMGGM 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + ++ + DV V + E + + GA +L KPF ++ + + + Sbjct: 64 EVLKSIKILQ--PDVPVIIITGYATVETAVDAIKNGAFDYLSKPFTPPQVKEMVNKAIEQ 121 Query: 121 QKSKDE 126 +K E Sbjct: 122 RKLSGE 127 >gi|84393277|ref|ZP_00992038.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01] gi|84376102|gb|EAP92989.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01] Length = 222 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + G+ V A EF + + + +++D + + Sbjct: 2 MSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSHPV-DLVLLDVMLPNLS 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I R++ + L D M+ G +AGA+ ++ KPFN L ++ + + Sbjct: 61 G-IQVARRICQRFATPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 119 Query: 121 QKSKDENQFLDA 132 + + Q L + Sbjct: 120 VGFERQRQSLAS 131 >gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIETEKK 127 >gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 226 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ +R+V F + V+EA + +A + P+ +++D M + Sbjct: 3 KRVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDAL-IWLDSVQPDLIILDIMMPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR V + L + + I G GA+ ++ KPF+ + L L + Sbjct: 62 WEVCRQVRSRSG---VPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMK 118 Query: 120 MQK 122 + Sbjct: 119 RVE 121 >gi|323527545|ref|YP_004229698.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384547|gb|ADX56638.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +VR + GF + E+E P+ +V+D M Sbjct: 5 VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V ++ I G GA+ +L KPF+ L + + + + Sbjct: 64 ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121 >gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 248 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 23 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 81 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 Query: 121 Q 121 Sbjct: 140 H 140 >gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 895 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D + + R + + V EA EA E K + +++D M +E Sbjct: 511 ILIADDEPEMMRFLRSQLSGR-YRVDEARDGAEALEIASKRRH-HLILLDFMMPQVDGIE 568 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+MP V + L D E AGA FL KPF+ L R L + Sbjct: 569 ATRRLREMPSHRGVPIIILTARADEEVKFQALDAGATDFLTKPFSSTELLARCRNLASVY 628 Query: 122 KSKDENQ 128 + + + + Sbjct: 629 EMQQQIE 635 >gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 511 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L++D + + + + G+ V T + P+ +++D +M + E Sbjct: 13 ILVIDDTPENLNLLSAMLTEQGYKVRSVTKGSTGLRGANA-VPPDLILLDVNMPEMNGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 H++ + V ++ D + G ++ KPF E + + Sbjct: 72 VCEHLKASDRTRKIPVIFISALGDVLDKVKAFAVGGVDYITKPFQLEEVLARIENHLTIW 131 Query: 120 --MQKSKDENQFLD 131 Q+ + +N+ L Sbjct: 132 KLQQQLQAQNERLQ 145 >gi|15804502|ref|NP_290542.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O157:H7 EDL933] gi|15834092|ref|NP_312865.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O157:H7 str. Sakai] gi|16131752|ref|NP_418348.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli str. K-12 substr. MG1655] gi|24115208|ref|NP_709718.1| DNA-binding transcriptional regulator CpxR [Shigella flexneri 2a str. 301] gi|30064793|ref|NP_838964.1| DNA-binding transcriptional regulator CpxR [Shigella flexneri 2a str. 2457T] gi|74314413|ref|YP_312832.1| DNA-binding transcriptional regulator CpxR [Shigella sonnei Ss046] gi|82546262|ref|YP_410209.1| DNA-binding transcriptional regulator CpxR [Shigella boydii Sb227] gi|82778920|ref|YP_405269.1| DNA-binding transcriptional regulator CpxR [Shigella dysenteriae Sd197] gi|89110116|ref|AP_003896.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli str. K-12 substr. W3110] gi|157158151|ref|YP_001465405.1| DNA-binding transcriptional regulator CpxR [Escherichia coli E24377A] gi|157163386|ref|YP_001460704.1| DNA-binding transcriptional regulator CpxR [Escherichia coli HS] gi|168748793|ref|ZP_02773815.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4113] gi|168755594|ref|ZP_02780601.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4401] gi|168761707|ref|ZP_02786714.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4501] gi|168768212|ref|ZP_02793219.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4486] gi|168775255|ref|ZP_02800262.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4196] gi|168780827|ref|ZP_02805834.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4076] gi|168786766|ref|ZP_02811773.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC869] gi|168799510|ref|ZP_02824517.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC508] gi|170022076|ref|YP_001727030.1| DNA-binding transcriptional regulator CpxR [Escherichia coli ATCC 8739] gi|170083383|ref|YP_001732703.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli str. K-12 substr. DH10B] gi|170683339|ref|YP_001746250.1| DNA-binding transcriptional regulator CpxR [Escherichia coli SMS-3-5] gi|187731406|ref|YP_001882606.1| DNA-binding transcriptional regulator CpxR [Shigella boydii CDC 3083-94] gi|188492588|ref|ZP_02999858.1| transcriptional regulatory protein CpxR [Escherichia coli 53638] gi|191166417|ref|ZP_03028248.1| transcriptional regulatory protein CpxR [Escherichia coli B7A] gi|193063906|ref|ZP_03044992.1| transcriptional regulatory protein CpxR [Escherichia coli E22] gi|193068055|ref|ZP_03049020.1| transcriptional regulatory protein CpxR [Escherichia coli E110019] gi|194427424|ref|ZP_03059973.1| transcriptional regulatory protein CpxR [Escherichia coli B171] gi|194433236|ref|ZP_03065517.1| transcriptional regulatory protein CpxR [Shigella dysenteriae 1012] gi|194438327|ref|ZP_03070418.1| transcriptional regulatory protein CpxR [Escherichia coli 101-1] gi|195937554|ref|ZP_03082936.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O157:H7 str. EC4024] gi|208807964|ref|ZP_03250301.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4206] gi|208814318|ref|ZP_03255647.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4045] gi|208820163|ref|ZP_03260483.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4042] gi|209397017|ref|YP_002273430.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4115] gi|209921392|ref|YP_002295476.1| DNA-binding transcriptional regulator CpxR [Escherichia coli SE11] gi|217324624|ref|ZP_03440708.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. TW14588] gi|218556475|ref|YP_002389389.1| DNA-binding transcriptional regulator CpxR [Escherichia coli IAI1] gi|218697627|ref|YP_002405294.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 55989] gi|218701384|ref|YP_002409013.1| DNA-binding transcriptional regulator CpxR [Escherichia coli IAI39] gi|218707537|ref|YP_002415056.1| DNA-binding transcriptional regulator CpxR [Escherichia coli UMN026] gi|238902979|ref|YP_002928775.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli BW2952] gi|253775448|ref|YP_003038279.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254039129|ref|ZP_04873179.1| transcriptional regulatory protein CpxR [Escherichia sp. 1_1_43] gi|254163863|ref|YP_003046971.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B str. REL606] gi|254795912|ref|YP_003080749.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O157:H7 str. TW14359] gi|256021558|ref|ZP_05435423.1| DNA-binding transcriptional regulator CpxR [Shigella sp. D9] gi|256026049|ref|ZP_05439914.1| DNA-binding transcriptional regulator CpxR [Escherichia sp. 4_1_40B] gi|260846667|ref|YP_003224445.1| DNA-binding response regulator CpxR in two-component regulatory system with CpxA [Escherichia coli O103:H2 str. 12009] gi|260857686|ref|YP_003231577.1| DNA-binding response regulator CpxR in two-component regulatory system with CpxA [Escherichia coli O26:H11 str. 11368] gi|260870632|ref|YP_003237034.1| DNA-binding response regulator CpxR in two-component regulatory system with CpxA [Escherichia coli O111:H- str. 11128] gi|261223545|ref|ZP_05937826.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli O157:H7 str. FRIK2000] gi|261257307|ref|ZP_05949840.1| DNA-binding response regulator CpxR in two-component regulatory system with CpxA [Escherichia coli O157:H7 str. FRIK966] gi|291285325|ref|YP_003502143.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli O55:H7 str. CB9615] gi|293407532|ref|ZP_06651451.1| DNA-binding transcriptional regulator CpxR [Escherichia coli FVEC1412] gi|293413352|ref|ZP_06656013.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B354] gi|293417376|ref|ZP_06660000.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B185] gi|293470226|ref|ZP_06664637.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B088] gi|297519848|ref|ZP_06938234.1| DNA-binding transcriptional regulator CpxR [Escherichia coli OP50] gi|298383280|ref|ZP_06992873.1| DNA-binding transcriptional regulator CpxR [Escherichia coli FVEC1302] gi|300819884|ref|ZP_07100068.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300823743|ref|ZP_07103869.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300896397|ref|ZP_07114930.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300906239|ref|ZP_07123949.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300919108|ref|ZP_07135647.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300922910|ref|ZP_07138986.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300931647|ref|ZP_07146956.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300938408|ref|ZP_07153153.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300947233|ref|ZP_07161440.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300954639|ref|ZP_07167082.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|301022754|ref|ZP_07186599.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301023973|ref|ZP_07187696.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301303390|ref|ZP_07209514.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301328243|ref|ZP_07221365.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301645100|ref|ZP_07245060.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307140611|ref|ZP_07499967.1| DNA-binding transcriptional regulator CpxR [Escherichia coli H736] gi|307313960|ref|ZP_07593574.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309783839|ref|ZP_07678484.1| transcriptional regulatory protein cpxR [Shigella dysenteriae 1617] gi|309796625|ref|ZP_07691031.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|312971799|ref|ZP_07785973.1| transcriptional regulatory protein cpxR [Escherichia coli 1827-70] gi|331644650|ref|ZP_08345769.1| transcriptional regulatory protein CpxR [Escherichia coli H736] gi|331655608|ref|ZP_08356600.1| transcriptional regulatory protein CpxR [Escherichia coli M718] gi|331665566|ref|ZP_08366464.1| transcriptional regulatory protein CpxR [Escherichia coli TA143] gi|331670765|ref|ZP_08371601.1| transcriptional regulatory protein CpxR [Escherichia coli TA271] gi|331675368|ref|ZP_08376118.1| transcriptional regulatory protein CpxR [Escherichia coli TA280] gi|331680029|ref|ZP_08380691.1| transcriptional regulatory protein CpxR [Escherichia coli H591] gi|332282797|ref|ZP_08395210.1| transcriptional regulatory protein CpxR [Shigella sp. D9] gi|83287786|sp|P0AE89|CPXR_ECO57 RecName: Full=Transcriptional regulatory protein CpxR gi|83287787|sp|P0AE88|CPXR_ECOLI RecName: Full=Transcriptional regulatory protein CpxR gi|83287788|sp|P0AE90|CPXR_SHIFL RecName: Full=Transcriptional regulatory protein CpxR gi|12518811|gb|AAG59106.1|AE005622_8 transcriptional regulator in 2-component system [Escherichia coli O157:H7 str. EDL933] gi|410157|gb|AAC36868.1| transcription factor [Escherichia coli] gi|2367329|gb|AAC76894.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli str. K-12 substr. MG1655] gi|13364314|dbj|BAB38261.1| transcriptional regulator in 2-component system CpxR [Escherichia coli O157:H7 str. Sakai] gi|24054492|gb|AAN45425.1| transcriptional regulator in 2-component system [Shigella flexneri 2a str. 301] gi|30043053|gb|AAP18775.1| transcriptional regulator in 2-component system [Shigella flexneri 2a str. 2457T] gi|41386674|dbj|BAD08346.1| regulator of two component system [Shigella sonnei] gi|73857890|gb|AAZ90597.1| transcriptional regulator in 2-component system [Shigella sonnei Ss046] gi|81243068|gb|ABB63778.1| transcriptional regulator in 2-component system [Shigella dysenteriae Sd197] gi|81247673|gb|ABB68381.1| transcriptional regulator in 2-component system [Shigella boydii Sb227] gi|85676147|dbj|BAE77397.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli str. K12 substr. W3110] gi|157069066|gb|ABV08321.1| transcriptional regulatory protein CpxR [Escherichia coli HS] gi|157080181|gb|ABV19889.1| transcriptional regulatory protein CpxR [Escherichia coli E24377A] gi|169757004|gb|ACA79703.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169891218|gb|ACB04925.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli str. K-12 substr. DH10B] gi|170521057|gb|ACB19235.1| transcriptional regulatory protein CpxR [Escherichia coli SMS-3-5] gi|187428398|gb|ACD07672.1| transcriptional regulatory protein CpxR [Shigella boydii CDC 3083-94] gi|187769203|gb|EDU33047.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4196] gi|188016800|gb|EDU54922.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4113] gi|188487787|gb|EDU62890.1| transcriptional regulatory protein CpxR [Escherichia coli 53638] gi|189001521|gb|EDU70507.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4076] gi|189357188|gb|EDU75607.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4401] gi|189362610|gb|EDU81029.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4486] gi|189367865|gb|EDU86281.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4501] gi|189373281|gb|EDU91697.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC869] gi|189378053|gb|EDU96469.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC508] gi|190903517|gb|EDV63235.1| transcriptional regulatory protein CpxR [Escherichia coli B7A] gi|192929371|gb|EDV82979.1| transcriptional regulatory protein CpxR [Escherichia coli E22] gi|192958675|gb|EDV89113.1| transcriptional regulatory protein CpxR [Escherichia coli E110019] gi|194414464|gb|EDX30737.1| transcriptional regulatory protein CpxR [Escherichia coli B171] gi|194418520|gb|EDX34608.1| transcriptional regulatory protein CpxR [Shigella dysenteriae 1012] gi|194422764|gb|EDX38760.1| transcriptional regulatory protein CpxR [Escherichia coli 101-1] gi|208727765|gb|EDZ77366.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4206] gi|208735595|gb|EDZ84282.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4045] gi|208740286|gb|EDZ87968.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4042] gi|209158417|gb|ACI35850.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. EC4115] gi|209752428|gb|ACI74521.1| hypothetical protein ECs4838 [Escherichia coli] gi|209752430|gb|ACI74522.1| hypothetical protein ECs4838 [Escherichia coli] gi|209752432|gb|ACI74523.1| hypothetical protein ECs4838 [Escherichia coli] gi|209752434|gb|ACI74524.1| hypothetical protein ECs4838 [Escherichia coli] gi|209752436|gb|ACI74525.1| hypothetical protein ECs4838 [Escherichia coli] gi|209914651|dbj|BAG79725.1| two-component response regulator [Escherichia coli SE11] gi|217320845|gb|EEC29269.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7 str. TW14588] gi|218354359|emb|CAV01104.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli 55989] gi|218363244|emb|CAR00889.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli IAI1] gi|218371370|emb|CAR19202.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli IAI39] gi|218434634|emb|CAR15567.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli UMN026] gi|226838565|gb|EEH70594.1| transcriptional regulatory protein CpxR [Escherichia sp. 1_1_43] gi|238860859|gb|ACR62857.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli BW2952] gi|242379449|emb|CAQ34264.1| CpxR transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253326492|gb|ACT31094.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975764|gb|ACT41435.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli B str. REL606] gi|253979921|gb|ACT45591.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli BL21(DE3)] gi|254595312|gb|ACT74673.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli O157:H7 str. TW14359] gi|257756335|dbj|BAI27837.1| DNA-binding response regulator CpxR in two-component regulatory system with CpxA [Escherichia coli O26:H11 str. 11368] gi|257761814|dbj|BAI33311.1| DNA-binding response regulator CpxR in two-component regulatory system with CpxA [Escherichia coli O103:H2 str. 12009] gi|257766988|dbj|BAI38483.1| DNA-binding response regulator CpxR in two-component regulatory system with CpxA [Escherichia coli O111:H- str. 11128] gi|260451250|gb|ACX41672.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|281603309|gb|ADA76293.1| Transcriptional regulatory protein cpxR [Shigella flexneri 2002017] gi|284924013|emb|CBG37112.1| two-component response regulator [Escherichia coli 042] gi|290765198|gb|ADD59159.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli O55:H7 str. CB9615] gi|291321436|gb|EFE60875.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B088] gi|291425449|gb|EFE98488.1| DNA-binding transcriptional regulator CpxR [Escherichia coli FVEC1412] gi|291430896|gb|EFF03892.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B185] gi|291468100|gb|EFF10598.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B354] gi|298276314|gb|EFI17834.1| DNA-binding transcriptional regulator CpxR [Escherichia coli FVEC1302] gi|299880600|gb|EFI88811.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300318401|gb|EFJ68185.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300359714|gb|EFJ75584.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300397379|gb|EFJ80917.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300401965|gb|EFJ85503.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300413784|gb|EFJ97094.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300420770|gb|EFK04081.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300453157|gb|EFK16777.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300456609|gb|EFK20102.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300460547|gb|EFK24040.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300523805|gb|EFK44874.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300527524|gb|EFK48586.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300841344|gb|EFK69104.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300845306|gb|EFK73066.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301076620|gb|EFK91426.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|306906277|gb|EFN36793.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|308119781|gb|EFO57043.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|308928210|gb|EFP73672.1| transcriptional regulatory protein cpxR [Shigella dysenteriae 1617] gi|309704338|emb|CBJ03687.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310334176|gb|EFQ00381.1| transcriptional regulatory protein cpxR [Escherichia coli 1827-70] gi|313647189|gb|EFS11642.1| transcriptional regulatory protein cpxR [Shigella flexneri 2a str. 2457T] gi|315063204|gb|ADT77531.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli W] gi|315138479|dbj|BAJ45638.1| DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli DH1] gi|315254285|gb|EFU34253.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|315617708|gb|EFU98313.1| transcriptional regulatory protein cpxR [Escherichia coli 3431] gi|320184955|gb|EFW59739.1| Copper-sensing two-component system response regulator CpxR [Shigella flexneri CDC 796-83] gi|320639162|gb|EFX08793.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O157:H7 str. G5101] gi|320644551|gb|EFX13608.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O157:H- str. 493-89] gi|320649874|gb|EFX18386.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O157:H- str. H 2687] gi|320655275|gb|EFX23221.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660902|gb|EFX28348.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O55:H7 str. USDA 5905] gi|320665967|gb|EFX32990.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O157:H7 str. LSU-61] gi|323161185|gb|EFZ47102.1| transcriptional regulatory protein cpxR [Escherichia coli E128010] gi|323167338|gb|EFZ53046.1| transcriptional regulatory protein cpxR [Shigella sonnei 53G] gi|323174349|gb|EFZ59975.1| transcriptional regulatory protein cpxR [Escherichia coli LT-68] gi|323177933|gb|EFZ63517.1| transcriptional regulatory protein cpxR [Escherichia coli 1180] gi|323380731|gb|ADX52999.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323934403|gb|EGB30816.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323938995|gb|EGB35213.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323943749|gb|EGB39847.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323959318|gb|EGB54979.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323964265|gb|EGB59748.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323969665|gb|EGB64949.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323974321|gb|EGB69450.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324020500|gb|EGB89719.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|324115685|gb|EGC09621.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|327250549|gb|EGE62257.1| transcriptional regulatory protein cpxR [Escherichia coli STEC_7v] gi|331036112|gb|EGI08348.1| transcriptional regulatory protein CpxR [Escherichia coli H736] gi|331046709|gb|EGI18794.1| transcriptional regulatory protein CpxR [Escherichia coli M718] gi|331057251|gb|EGI29241.1| transcriptional regulatory protein CpxR [Escherichia coli TA143] gi|331062020|gb|EGI33943.1| transcriptional regulatory protein CpxR [Escherichia coli TA271] gi|331067428|gb|EGI38833.1| transcriptional regulatory protein CpxR [Escherichia coli TA280] gi|331072355|gb|EGI43688.1| transcriptional regulatory protein CpxR [Escherichia coli H591] gi|332085156|gb|EGI90334.1| transcriptional regulatory protein cpxR [Shigella dysenteriae 155-74] gi|332088270|gb|EGI93390.1| transcriptional regulatory protein cpxR [Shigella boydii 3594-74] gi|332105149|gb|EGJ08495.1| transcriptional regulatory protein CpxR [Shigella sp. D9] gi|332751599|gb|EGJ81998.1| transcriptional regulatory protein cpxR [Shigella flexneri 4343-70] gi|332752622|gb|EGJ83008.1| transcriptional regulatory protein cpxR [Shigella flexneri 2747-71] gi|332764548|gb|EGJ94780.1| response regulator [Shigella flexneri 2930-71] gi|332998014|gb|EGK17620.1| transcriptional regulatory protein cpxR [Shigella flexneri VA-6] gi|332998636|gb|EGK18233.1| transcriptional regulatory protein cpxR [Shigella flexneri K-218] gi|333013845|gb|EGK33207.1| transcriptional regulatory protein cpxR [Shigella flexneri K-304] gi|739996|prf||2004283A membrane sensor regulator Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A + + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|307822388|ref|ZP_07652620.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] gi|307736954|gb|EFO07799.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] Length = 352 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + ++ L + G+ V A + A + + P+ +++D M + E Sbjct: 13 ILIVDDTLANLQLLSTLLKEEGYKVRPANNGAMALQAVATKK-PDLILLDIKMPEMSGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P ++ V ++ D I GA ++ KPF E ++ + Q++ Sbjct: 72 VCTALKDNPETKNIPVLFISALNDVTDKIQAFNVGALDYINKPFQFEEVKARVATHLQLK 131 Query: 122 KSKDENQ 128 +D+ + Sbjct: 132 AYEDDME 138 >gi|303257132|ref|ZP_07343146.1| DNA-binding response regulator VicR [Burkholderiales bacterium 1_1_47] gi|302860623|gb|EFL83700.1| DNA-binding response regulator VicR [Burkholderiales bacterium 1_1_47] Length = 235 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF V A+ +A E K P+ +++D M + Sbjct: 6 ILIVDDESKIRRLLAQNLELEGFDVQTASDGAQALEVYNKSVEKPDLILLDLMMPEIDGM 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++++ +DV V L + + +I G R GA+ F+ KPF E L +R + + K Sbjct: 66 -SMLKRLRKSSDVPVIILSAKDERPMVIEGFREGADDFVSKPFYIEELMERIRAVLRRGK 124 Query: 123 SKD 125 ++ Sbjct: 125 TRS 127 >gi|291568300|dbj|BAI90572.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 377 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M S+L++D V ++ + + A S E K + P+ +++D M Sbjct: 1 MLSILVIDDEPDNFDVIETFLSNQDYQLHYAASGQEGISAL-KLIQPDLILLDVMMPAID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E ++ MPL + + E + AGA+ F+ KP N LR + + Sbjct: 60 GIEVCRRIKAMPLWQSTPIIMVTALSSKESLAKCIAAGADDFIGKPVNALELRSRVHSML 119 Query: 119 QMQKSKDENQFLD 131 ++++ D+ L Sbjct: 120 RIKQQYDQISHLS 132 >gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D + + + F V A + E E + +++D M Sbjct: 1 MYKVLIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIE-ENEFDIILLDVMMPKKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + VR ++V + + + + I G GA+ +++KPF+ + + + Sbjct: 60 GFDVCRQVR---TFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271] gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|192361000|ref|YP_001982278.1| abfR arabinofuranosidase two component system response regulator [Cellvibrio japonicus Ueda107] gi|190687165|gb|ACE84843.1| abfR arabinofuranosidase two component system response regulator [Cellvibrio japonicus Ueda107] Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL+D + ++ ++ GF V +A E ++ + +V+D + Sbjct: 1 MLKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVE-LTEQAAYSLIVLDVMLPVRS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + +RQ + V L + D + G GA+ +L KP + L +R + Sbjct: 60 GFDVLKILRQH---SQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAIL 116 Query: 119 QMQKSKDENQ 128 + + NQ Sbjct: 117 RRASIAEANQ 126 >gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + R G+ V AT + F + +V+D + V Sbjct: 2 RVLIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDG-HFLGSSENYDAVVLDLGLPEVDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G ++ V L + +AG AGA+ +L KPF E L +R L + Sbjct: 61 TVLDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRR 118 >gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 248 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 23 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 81 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 Query: 121 Q 121 Sbjct: 140 H 140 >gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)] gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)] Length = 1829 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1708 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1767 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M++ + Sbjct: 1768 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1827 >gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp. YIT 12067] gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp. YIT 12067] Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59 M +L+ D + + + GF A EA + + E +++D M + Sbjct: 1 MKKMLIADDNKQITTILSGYAKKEGFEPVVALDGAEALDKYLQYEHEIAVVLLDVMMPEI 60 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R+ + V + + + I G GA+ +++KPF+ + +R + Sbjct: 61 DGFEVCRRLRKESM---VPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAV 117 Query: 118 PQMQKSKD 125 + +++ Sbjct: 118 LRRLGAQE 125 >gi|317494749|ref|ZP_07953161.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917351|gb|EFV38698.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L + GF V A +A E + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLQELLDLEGFSVVVAHDGEQALELLDSSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + VRQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKEVRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SNWNEQQQ 125 >gi|323343418|ref|ZP_08083645.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269] gi|323095237|gb|EFZ37811.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269] Length = 1348 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++ + + R++ D + + A + EA E +E P+ ++ D M + Sbjct: 1090 KRILVVEDNNEMVVLLRNILQDH-YTIDAAANGIEALE-WIRESGPDLVISDVMMPRMDG 1147 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ + + V L + + I G + GA+ +L KPFN E L + + Sbjct: 1148 FALCGAIKKDVMLCHIPVILLTAKTLDKDKIKGYKEGADMYLNKPFNPELLLSMIGNVFH 1207 Query: 120 M 120 Sbjct: 1208 R 1208 >gi|288924702|ref|ZP_06418639.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] gi|288338489|gb|EFC76838.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] Length = 1321 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R + + V A + E E +E +P++++ D SM + Sbjct: 1036 TILVVEDNSDLRTFLYSILGR-DYNVIMAENGKEGLEMAIRE-MPDFILTDVSMPVMDGL 1093 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q + + + L + G R G + ++ KPF+ L+ + + Sbjct: 1094 TMVHHIKQNKDISHLPIIILSARASMKDQEQGLREGVHGYITKPFSAAYLKGRIENILAH 1153 Query: 121 QKSKDENQFLDAI 133 QK + + L+ I Sbjct: 1154 QKMY-QQKALEQI 1165 >gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900] Length = 319 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|238063370|ref|ZP_04608079.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. ATCC 39149] gi|237885181|gb|EEP74009.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. ATCC 39149] Length = 1347 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL D + +R+ L + V EA E + ++ D M Sbjct: 646 RILLADDNADLREHVARLLCPS-WEVVAVPDGVEALRRAM-ETPFDLVLTDVMMPRLDGF 703 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P V + L + +AG GA+ +L KPF+ + L +R ++ Sbjct: 704 GLVTALRADPRTRHVPIVLLSARAGSAEAVAGLAVGADDYLTKPFSSQELIARVRANVEL 763 Query: 121 QKSKDE-NQFLDAI 133 + + + + L A+ Sbjct: 764 GQLRGQIIRRLRAL 777 >gi|256424519|ref|YP_003125172.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039427|gb|ACU62971.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1306 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLL++ S R + F + +A + + +PN +V D +M + Sbjct: 1061 LLLIEDSEDFRFYLKDNLGVH-FHIIDAANGKLGWAIL-QHTVPNLIVSDVNMPEMDGLE 1118 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + V L E + GA ++ KPFN E L +R + Q Sbjct: 1119 LCRRIRQNQRLAHLPVILLTARASEEDQLEALDNGATDYITKPFNYEVLLSRIRNIVSQQ 1178 Query: 122 KSKDE--NQFLDA 132 S + Q +DA Sbjct: 1179 VSLKKTFQQHIDA 1191 >gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135] gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135] Length = 231 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M S+L+++ V + + + G+ A + ++ D + Sbjct: 1 MYSILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHS-FQLVISDIILPKLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ + V L + + G AGA+ +++KPF+ L ++ L Sbjct: 60 GFELCKEIRK--ANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117 Query: 119 QMQ 121 + + Sbjct: 118 KRK 120 >gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] Length = 222 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + GF V A+ A + + E + +V+D S+ + Sbjct: 2 RILLVEDHDELSLWLQKALSSTGFAVDIASDGAIADQLLQTESY-SLVVLDVSLPRLSGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G ++ V L D + G AGA+ +L KPF+ L +R L + + Sbjct: 61 EVLAQMRKRGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALLRRSQ 120 Query: 123 SK-DENQFLDAI 133 + +E Q ++ Sbjct: 121 GQVNEPQRFGSL 132 >gi|170695738|ref|ZP_02886880.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170139343|gb|EDT07529.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +VR + GF + E+E P+ +V+D M Sbjct: 5 VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V ++ I G GA+ +L KPF+ L + + + + Sbjct: 64 ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121 >gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator [Dehalococcoides sp. VS] gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator [Dehalococcoides sp. VS] Length = 227 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + ++ + GFMV A +E P+ +++D + + Sbjct: 3 KQILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEEN-PDLIILDLMLPEISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L + + G GA+ ++ KPF + L ++ + Sbjct: 62 WDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQLR 118 Query: 120 MQK 122 + Sbjct: 119 RSE 121 >gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 224 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ V + + + V A E + E + +V+D + L Sbjct: 2 RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLAL-EKPFDLIVLDWMLPKKDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + L + E ++AG +G++ +L KPF L +R L + Sbjct: 61 SVLKELRERKNL--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRR 118 Query: 121 QKS 123 + Sbjct: 119 SEL 121 >gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] Length = 219 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D +RK+ + G++V EA E E + + +++D M + Sbjct: 1 MKKILVIDDEWKIRKLIKDYLVREGYIVDEAGDGEEGIEKFFSNIY-DIVILDIMMPKID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L D + G + +++KPFN + L ++ L Sbjct: 60 GWSVCRKIREE---SQVPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|225872700|ref|YP_002754157.1| response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794094|gb|ACO34184.1| response regulator [Acidobacterium capsulatum ATCC 51196] Length = 370 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 4/135 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R V + ++ A + EA E E++ + ++ D M G+ Sbjct: 5 RILVVDDEPYIRAVIATMLEKSNYLPVLAANGQEALEHLEQDAPYDVVLSDIMMNGMDGI 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + D + + D I+ R GA +LLKPF +E L + ++ Sbjct: 65 GLLEKLREVHPDTPMIMVTAMHDVSIAISAMRKGAYDYLLKPFAKEQLLATVGRALDYRR 124 Query: 123 SKDEN----QFLDAI 133 +N Q L+ + Sbjct: 125 LVQQNSMYRQNLEEL 139 >gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 227 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD ++++ R G+ V + S EA ++ P+ +++D + + Sbjct: 6 TILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQ-RPDLVILDIMLPDLDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L + +I G GA+ +L KPFN + L +R L + Sbjct: 65 TVCQRVRE-FASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRR 121 >gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396] gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+++ + I+R+ D G++V A E ++ + +++D + + F Sbjct: 2 RLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGY-DLIILDIMLPHMNGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R LG D V L + E + G R+GA+ +L+KPF+ + L + L + + Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRR 119 >gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 221 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + G++V AT A E + + +V+D + + Sbjct: 3 KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIVLDVMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V + L + E + G + ++ KPF+ L + + + Sbjct: 62 FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118 Query: 120 MQKSKDEN 127 +EN Sbjct: 119 RANGLEEN 126 >gi|91774040|ref|YP_566732.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713055|gb|ABE52982.1| Multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 492 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ + + + A E E E + + +++D M Sbjct: 7 TKILVVDDEPLNVELMEIYLSP-DYEIISAYGGVEGLEKVATENV-DLILLDIMMPDVSG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ P + + + + I AGA+ FL KP +R L +R L + Sbjct: 65 FEVCESLKADPRYQLIPIIMVTALSGKDDKIRSIEAGADDFLSKPVDRLELATRVRSLLR 124 Query: 120 MQKSKDEN 127 +++ D Sbjct: 125 IRQLNDRL 132 >gi|300726552|ref|ZP_07059996.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] gi|299776166|gb|EFI72732.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] Length = 1330 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+++ + +R+ +D F V++A E +L+P ++ D M + Sbjct: 1073 TILVIEDNAGIRQYIADSLSDR-FTVYQAADGREGLAKAL-DLIPTIVISDIMMPAMDGN 1130 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + G AGA+S++ KPF+R L + L Sbjct: 1131 ELCKALKTDMRTSHIPVILLTAKDSNQAKEEGYEAGADSYITKPFSRSLLVTRIDNLIAQ 1190 Query: 121 QK 122 +K Sbjct: 1191 RK 1192 >gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + +D F V A + E + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803] gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|218460387|ref|ZP_03500478.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli Kim 5] Length = 218 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R V G + EA + + +++D M + Sbjct: 4 RILVVDDEPHIRDVICFALERAGLTSTAVRTGTEAMAAFRRGN-IDLIILDIGMPDMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + +L + I G G + ++ KPF+ L ++ + + Sbjct: 63 EVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119 Query: 121 QKS-KDENQFLDAI 133 + ++ A+ Sbjct: 120 SGNGAAPDRRHAAL 133 >gi|254485790|ref|ZP_05098995.1| response regulator [Roseobacter sp. GAI101] gi|214042659|gb|EEB83297.1| response regulator [Roseobacter sp. GAI101] Length = 408 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD S + R++ +GF V EA S EA E C + LP+ ++ D M G+ Sbjct: 1 MQLVLVVDDSKLQRRILSASLTRWGFEVVEAASGDEALEQC-RIRLPDLVISDWVMPGMN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---R 115 F R + + L + + ++ G GA+ FL KP + LR + Sbjct: 60 GLQFCRAFRDLSNFQYGYFILLTSKSEKAEVAKGLDNGADDFLSKPVDVHELRARITAGE 119 Query: 116 ELPQMQKSKDENQFL 130 + MQ+ E + Sbjct: 120 RILDMQRELTEKNRI 134 >gi|75910898|ref|YP_325194.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75704623|gb|ABA24299.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 381 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L++D V L ++ + + S EA P+ +++D M G+ Sbjct: 5 SILVIDDLPDNFDVIETLLSEQDYTLHYVASGQEAIASLNL-FQPDLILLDVMMPGMDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ MP V + + E + ++GA+ F+ KP N LR + + ++ Sbjct: 64 EVCQRIKAMPQWQSVPIIMVTALTAKEDLARCLKSGADDFISKPINALELRARLHSMLRI 123 Query: 121 QKSKDENQFLDAI 133 ++ D+ Q L I Sbjct: 124 KQQYDKIQTLSNI 136 >gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A E E+ +ID M + F Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIE-EVKVEMAIIDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 1831 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1710 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1769 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1770 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1829 >gi|288925550|ref|ZP_06419483.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] gi|288337766|gb|EFC76119.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] Length = 865 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+V+ + R+ + + + VFEA + EA E + + +V D M + Sbjct: 619 TLLIVEDNDDFRRFIKESLQEE-YTVFEAGNGQEALE-LTAQESIDMIVSDVMMPVMDGL 676 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + + V L E +I+G + GA+ ++ KPFN E L+ +R+L Sbjct: 677 QLCHRIKTDINFSHIPVILLTARTADEHVISGLKEGADEYITKPFNMEILKIKIRKLF 734 >gi|261250889|ref|ZP_05943463.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis CIP 102891] gi|260937762|gb|EEX93750.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis CIP 102891] Length = 376 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 8/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD + R + L + F V A + +A LP+ +++D M + Sbjct: 7 SVLVVDDNAENRVLLSGLLKPY-FKVLVAVNGEQALTIASA-KLPDIILLDIMMPEMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P+ + V +L + E G GA ++LKP + L + ++ Sbjct: 65 EVCLRLKSNPITESIPVIFLTAKTQIEDEQRGFEVGAVDYILKPISPPILLTRINTHLKL 124 Query: 121 QKSKDE----NQFLDA 132 + + DE N+ L+ Sbjct: 125 RGAMDELSHQNEVLEE 140 >gi|160879024|ref|YP_001557992.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427690|gb|ABX41253.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 236 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + + G+ VF+A + + E + E + ++D M + Sbjct: 6 VLIVEDDREILEGIGIYLRNQGYTVFQAENGKKGLEIMQNET-IHLAIVDIMMPVMDGIT 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 ++ D V L + + + G GA+ ++ KPF L + + Sbjct: 65 MTMKLRENF-DFPVIMLSAKSEEIDKVTGLNIGADDYVTKPFTPMELMARVNSHLRRYS- 122 Query: 124 KDENQFLDAI 133 ++L A+ Sbjct: 123 ----RYLKAV 128 >gi|15614110|ref|NP_242413.1| hypothetical protein BH1547 [Bacillus halodurans C-125] gi|10174164|dbj|BAB05266.1| BH1547 [Bacillus halodurans C-125] Length = 661 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + KV + + + V S EA + + + +V D M + Sbjct: 331 RILVVDDEPVNLKVIASILANEAYEVKTVISGEEAIAVLDTKEW-DLVVADVMMPKMSGY 389 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++RQ T++ + + E + G RAGAN +L KP N LR ++ L + Sbjct: 390 ELTKNIRQRFTLTELPILLITARSRPEDIENGFRAGANDYLTKPVNLLELRARIKALTEA 449 Query: 121 QKSKDENQFLD 131 ++S + ++ Sbjct: 450 KQSIRDQLRME 460 >gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti] gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 227 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ GF V EA E +E LP+ L++D + G + Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EIRLQERLPDLLILDWMLPGVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 63 ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 121 QKSK 124 K + Sbjct: 123 AKPE 126 >gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIY-DAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTQQTI 127 >gi|119387030|ref|YP_918085.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377625|gb|ABL72389.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ R+V ++ GF V A + EA E P+ +V+D + +E Sbjct: 8 VLVVEDEGAQREVLKYNLEAEGFDVVLAENGDEAM-LLVAEEQPDLIVLDWMLPNVSGIE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 V+ P + + L + + G GA+ +++KP++ L Sbjct: 67 ICRRVKADPSTRQIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMA 117 >gi|300694206|ref|YP_003750179.1| transcriptional regulatory protein ompr [Ralstonia solanacearum PSI07] gi|299076243|emb|CBJ35557.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum PSI07] Length = 245 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R + GF V + + P +V+D M V Sbjct: 4 TKILVVDDDVELRDLLREYLSQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A DV V L D I G GA+ +L KPF+ L + + + + Sbjct: 63 LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122 Query: 122 KS 123 ++ Sbjct: 123 QA 124 >gi|295707302|ref|YP_003600377.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294804961|gb|ADF42027.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + G VF A EA E KE + + +++D M Sbjct: 6 VLVVDDEQEIRNGIAIYLKNEGIKVFTAKDGIEAIEILNKEKV-HLIILDIMMPRQDGIS 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + L + + + G + GA+ ++ KPFN L ++ + Sbjct: 65 TTFKIREQ-KNIPIIMLSAKSEDADKVLGLQVGADDYVTKPFNPLELIARVKSQLRR 120 >gi|323342046|ref|ZP_08082279.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464471|gb|EFY09664.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 222 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M L+VD +R+V + G + EA+ EA E + + +V+D M + Sbjct: 1 MVRFLIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDY-DVVVLDIMMPNLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A R++ DV + L + + G G + ++ KPF+ + L ++ + + Sbjct: 60 GFTAC-REIKKIKDVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARIKAVSER 118 Query: 121 QK 122 K Sbjct: 119 AK 120 >gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ ++ + R GF V A + + +++D + L Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPY-DLVLLDLGLPKRDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R G + V + + G AGA+ +L+KPF+ + L MR L + Sbjct: 61 DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 Query: 121 QKSKD 125 Q + Sbjct: 119 QSGRS 123 >gi|167761675|ref|ZP_02433802.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC 43183] gi|167763397|ref|ZP_02435524.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC 43183] gi|167698691|gb|EDS15270.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC 43183] gi|167700456|gb|EDS17035.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC 43183] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S +A + + L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEDALKM--DISTYDLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ + + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASMLKKEKKTAKIPIIFITAKDTENDTVTGFNIGADDYISKPFSLREVAARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + + + + I Sbjct: 123 TRQTETERAPEQI 135 >gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] Length = 242 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + + G+ V A E E +++++D + + Sbjct: 1 MKKVLIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAY-DFIILDLMLPSMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +RQ + D + L + D + I G GA+ ++ KPF+ + M+ + Sbjct: 60 GMDICKKLRQEKI--DAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIM 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 ++VD + ++ + G+ V +A + EA K P+ +++D M + F Sbjct: 1 MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKS-QPDLIILDIMMPEMDGLSF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ + V + + +V+ I G GA+ ++ KPFN L ++ L + Sbjct: 60 CTQVRKS---SQVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRR 114 >gi|99078349|ref|YP_611607.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99035487|gb|ABF62345.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 238 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D H +R++ + G+ V EA + +A + P+ +V+D +M G Sbjct: 8 KRILVCDDEHHLREMLSEYLCERGYEVMEAEN-ADAMLAVFNDDTPDVVVLDINMPGTDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + + + V L + I G GA+ +L KP + L ++ + Q Sbjct: 67 LT-ALRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQ 125 >gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 230 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD VR+ + V A EA +L P+ +++D M + Sbjct: 9 TLLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAV-ADLRPDLILLDVMMPALDGL 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G + L + I G AGA+ ++LKP++ L +R L + Sbjct: 68 AVCRALR--SAGDRTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRR 125 Query: 121 QK 122 + Sbjct: 126 TR 127 >gi|198274494|ref|ZP_03207026.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135] gi|198272696|gb|EDY96965.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135] Length = 1398 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + +R R + ++ + V EA+ EA + ++++ D M + Sbjct: 1149 ILVVEDNKDMRDYIRSILAEY-YNVLEASQGEEALALLHANNV-DFIISDLMMPVMDGME 1206 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+ + + L + E + + GA++FLLKPF+ L + + + + Sbjct: 1207 LSRRVKNDFSISHIPFLMLTAKTSDEARLESYKMGADAFLLKPFDENMLLARISNILENR 1266 Query: 122 KSKDE 126 K + Sbjct: 1267 KRFQQ 1271 >gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 301 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L++D V + GF V A S A E L P+ +++D M G+ Sbjct: 3 KTVLIIDDVPANVGVLLDVLAAAGFEVAVAESGQSALEQL-AWLKPDIILLDVLMPGLDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ DV V ++ + + G AGA +L KP + E + + + Sbjct: 62 FETCRRLKAREATADVPVLFMTALTEVVDKVKGFAAGAVDYLAKPLHPEEVLARVNAHLK 121 Query: 120 MQKSKDENQFLD 131 +++ + + Sbjct: 122 IREQQQLLEQRA 133 >gi|116073926|ref|ZP_01471188.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069231|gb|EAU74983.1| two-component response regulator [Synechococcus sp. RS9916] Length = 265 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LL++ +R++ GF V A + + + P+ +++D + L Sbjct: 5 ILLIEDDGDMRELVGGHLEHNGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L + ++G +GA+ +L KPF+ E L+ ++ L + Sbjct: 64 LCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRVKALLRR 122 >gi|319640170|ref|ZP_07994896.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_40A] gi|317388157|gb|EFV69010.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_40A] Length = 1357 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + +R LF + V+EA + E + +P+ ++ D M Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGGDVAMS-KIPDLIISDIMMPVKDG 1162 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R+ P + + L + + ++ ++ G + +++KPFN E L+ +R L Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1223 QRERLKR 1229 >gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1444 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + + + + D F ++ A E + P+ +V D+ M + Sbjct: 1189 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1246 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + + V L + + E GAN++++KPF+++ L + +L Sbjct: 1247 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1306 Query: 121 QKSKDE 126 +K E Sbjct: 1307 RKLFRE 1312 >gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] Length = 221 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATH-IELIITDVMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ V + + DFE G + GA+ ++ KP + + + L + Sbjct: 60 GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119 Query: 121 QK 122 K Sbjct: 120 SK 121 >gi|262196998|ref|YP_003268207.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Haliangium ochraceum DSM 14365] gi|262080345|gb|ACY16314.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Haliangium ochraceum DSM 14365] Length = 1131 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R + + G+ V + A K P+ L++D M + F Sbjct: 799 RVLVVDDDDAIRAICREVLENAGYAVRDVPDGYAALTE-TKRYRPDLLLLDIMMPEMDGF 857 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L + + R+GA ++ KPF+ L + + + Sbjct: 858 QTAERLKSDPSTSMTPIIFLSAKGATADKVRAFRSGAEDYVTKPFDAAELVARVSKTVER 917 Query: 121 QKSK 124 + Sbjct: 918 HSRE 921 Score = 53.7 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 35/116 (30%), Gaps = 3/116 (2%) Query: 16 VGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEFIAHVRQMPLGTD 74 + + GF V A EA +E + D L + R P Sbjct: 688 ALKGILLMAGFQVLIAEDADEALALTREEQPSLAVIYTDTPDRDGLALVEIFRHDPDTRK 747 Query: 75 VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130 V + + A +RA AN FL P A L Q + ++ L Sbjct: 748 TAVLVIS--GTEDLRDAASRANANEFLHTPLAPGAFVEACTRLIQETGRVNAHRVL 801 Score = 49.0 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 17/144 (11%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +V + + R + + + A + AR E + +++ E + Sbjct: 6 KIVAIV-DEPALAEEVRGELSRQ-YDLDIAITTEGARARLEANPDIDVVLLPEFSDEGPA 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR----AGANSFLLKPFNRETLRFAMREL 117 L DV + + + + + AGA P+ L A+ Sbjct: 64 VARAANLGELRPDVPILVVSADPESSDLNTAIHGQQIAGAVQV---PWRSGELSMAVERT 120 Query: 118 PQMQKSKDE--------NQFLDAI 133 + + + E + LDA+ Sbjct: 121 AEFGRLRRELDSMRDRMQRRLDAL 144 >gi|167031289|ref|YP_001666520.1| osmolarity response regulator [Pseudomonas putida GB-1] gi|166857777|gb|ABY96184.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|313496610|gb|ADR57976.1| OmpR [Pseudomonas putida BIRD-1] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ + + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQ-MDRLLQREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACKRLRQQNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129 >gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 245 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+ D + + + D + + + EA + EK+ + +++D M Sbjct: 19 RRILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQP-FDVVILDVMMPYVDG 77 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R +DV + L E ++ G GA+ ++ KPF L + + + Sbjct: 78 FEACERIRAQ---SDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILR 134 Query: 120 MQKSKDENQ 128 + + Sbjct: 135 RVEGYSARR 143 >gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 230 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+ D +R + + + G+ V EA EA + + ++D M + Sbjct: 2 MDKILIADDETEIRSLLKLYLENEGYAVAEAGDGQEALKIL-AGGDISLCLLDVMMPEMD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +++M ++ V + I G GA+ +++KPFN +R + Sbjct: 61 GF-HVLKEMRKNNNIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRR 119 >gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 234 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + G+ VF+A + E + ++E + +++D M G+ Sbjct: 5 NILVVDDEKEIADLVEICLVSDGYRVFKAENAKEGLDILDREN-IHLVLLDIMMPGMDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++ + L I G GA+ +++KPFN L ++ + Sbjct: 64 EMC-RKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 >gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D +R V R D G+ V EA +A + + + + ++D M + + Sbjct: 4 TILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPV-DVCLLDIMMPEMDGY 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ +DV V + + + I G GA+ +++KPFN + + K Sbjct: 63 -QVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLK 121 Query: 123 SKDENQ 128 Q Sbjct: 122 GMAAAQ 127 >gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1964 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD L + V A + + + +++D M G+ Sbjct: 1845 KKVLIVDDDVRNIFALTSLLERYQMQVIPAENGAAGIACLQNSTDIDLVLMDVMMPGMDG 1904 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++ + + L + AGA+ ++ KP + E L +R Sbjct: 1905 YETMKAIRKLQQFQSLPIIALTAKAMKGDRDKCLDAGASDYITKPVDTEQLLSILRVWL 1963 Score = 70.2 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 9/122 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD ++ + GF A A +K P + +D + G Sbjct: 1578 ILIVDDDLNFARLVLEIARGQGFKGLIALRSSTALAMLQK-YQPCAVTLDICLPGDSGWT 1636 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA---MRELP 118 + ++ P + + + G + GA S+ KP RE L +++ Sbjct: 1637 ILDRIKHDPKTVHIPGIIMSVNN---DRQRGQKLGAYSYYQKPLTRENLVKIMAGLKQFI 1693 Query: 119 QM 120 + Sbjct: 1694 ER 1695 >gi|182418651|ref|ZP_02949928.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237668000|ref|ZP_04527984.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377513|gb|EDT75067.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237656348|gb|EEP53904.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + +R++ R L GF V EA + +A + +++D M Sbjct: 1 MRNILIADDNDEIREIVRILLESEGFNVSEAINGEDAVNKVNDNT--DLIILDIMMPIKS 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A + + + +L + AG++ FL KPF+ L ++ L + Sbjct: 59 GFKACIEIREKTSA-PILFLTAKSQDSDKCMAFSAGSDDFLSKPFSYTELISRVKALLRR 117 >gi|241554112|ref|YP_002979325.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863418|gb|ACS61080.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 6/132 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R V G A + EA + + +++D M + Sbjct: 4 RILVVDDEPHIRDVICFALERAGLAWMAARNGTEAMAAFRRGN-IDLIILDIGMPEMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + +L + I G G + ++ KPF+ L ++ + + Sbjct: 63 EVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVKAILKR 119 Query: 121 QKSKDENQFLDA 132 + E A Sbjct: 120 SSNGAEPDRRHA 131 >gi|150003705|ref|YP_001298449.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149932129|gb|ABR38827.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1328 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + D + + A EA KE +V D M + F Sbjct: 1080 LIVDDNEEMLNFLSSSLTDK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + L + D I G GA++++ KPF+ + L ++ L ++ Sbjct: 1138 CKAIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197 Query: 123 SKDE 126 + Sbjct: 1198 LLRQ 1201 >gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] Length = 247 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G V A + + +V+D + G+ F Sbjct: 18 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 76 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L IAG GA+ +L KPFN + L +R L + Sbjct: 77 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 134 >gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + ++ R GF V +T E E E + +++D + G Sbjct: 1 MGKVLIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDY-DLVLLDLMLPGLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R ++ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GYEICRRIRA---TKEIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHI 116 Query: 119 QM 120 Sbjct: 117 NR 118 >gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624] gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624] Length = 319 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDHAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 230 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+ D + + K+ + F V A EA + P +++D M Sbjct: 3 RNILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFD-HYNPQLVLLDIMMPLIDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ ++ + + + + I G +GA+ +++KPF+ + ++ + + Sbjct: 62 IEVCNRIREK---SNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|241113448|ref|YP_002973283.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861656|gb|ACS59322.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 2099 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD + G V AT+ EA + E +++D M G+ + Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R P + + L + AGA+ +L KP N E L A+R Sbjct: 2040 ETMQVIRSEPRFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099 Score = 91.8 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 15/139 (10%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ +V L D GF V A +A ++ P + +D + +L Sbjct: 1713 LLVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALALA-QDYRPAAISLDIFLPDMLGWT 1771 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 ++ ++Q P + V + E G GA +F+ KP E L ++ Sbjct: 1772 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAYA 1828 Query: 119 QMQKSK------DENQFLD 131 Q ++ +E + L Sbjct: 1829 QPRRKHLLLVEDNEAERLS 1847 Score = 77.9 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLV+ + R L + S EA + + + +V+D S+ + Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALDALRQNAA-DCVVLDLSLPDMSG 1891 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 F + +R +V V + A + A S ++K + E L Sbjct: 1892 FDVLEQIRDDAEIREVPVVVFTGRELSAEEDAALHSMARSVVVKGVESPERLLD 1945 >gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + +D F V A + E + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTKQTI 127 >gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J] gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIETEKK 127 >gi|161520008|ref|YP_001583435.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353810|ref|YP_001949437.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|160344058|gb|ABX17143.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189337832|dbj|BAG46901.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E + P+ +V+D + G Sbjct: 7 VLIVDDDRAIRELIADYLEKNGMRVSLAANGRE-MRSVLDDGAPDLIVLDLMLPGEDGLT 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 2/129 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ R G+ V EA + EA + E P+ L++D + + Sbjct: 7 RILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEH-PDILILDLGLPDIDGV 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 VR++ ++V + L + + + AGA+ +L KPF + L +R + + Sbjct: 66 -EVVRRIREWSNVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHRT 124 Query: 123 SKDENQFLD 131 ++ + Sbjct: 125 PDQQDTVFE 133 >gi|320333135|ref|YP_004169846.1| response regulator receiver and SARP domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754424|gb|ADV66181.1| response regulator receiver and SARP domain protein [Deinococcus maricopensis DSM 21211] Length = 343 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 4/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + K+ + G V EA + + P+ ++ D M + Sbjct: 1 MPRVLVVDDDAAILKLVSVILTRAGHEVRTCAHPNEALDLLNV-MTPDLVISDVVMPYMT 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 EF+ HVR P D+ L + + + G GA+ +L KPF L A+ Sbjct: 60 GYEFLEHVRAQPNMADLPFMLLSSHAERDDVRRGMNLGADDYLPKPFTPHDLTSAVDARL 119 Query: 119 QMQKSKDENQF-LDA 132 + K + Q L+A Sbjct: 120 RRAGQKVQAQSGLEA 134 >gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74] gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74] Length = 1963 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + G V A + E E E+ +++D M + Sbjct: 1843 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1902 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+MP + + L + +GA+ ++ KP + + L A+ + ++ Sbjct: 1903 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLRV 1962 Query: 121 Q 121 + Sbjct: 1963 K 1963 >gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ GF +EA +A E E+ +ID M + F Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIE-EVRVEMAIIDIMMPNMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D+ + L + + + + G G + +L+KPF+ L ++ L + Sbjct: 63 DLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|209522751|ref|ZP_03271309.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496800|gb|EDZ97097.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 379 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M S+L++D V ++ + + A S E K + P+ +++D M Sbjct: 1 MLSILVIDDEPDNFDVIETFLSNQDYQLHYAASGQEGISAL-KLIQPDLILLDVMMPAID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E ++ MPL + + E + AGA+ F+ KP N LR + + Sbjct: 60 GIEVCRRIKAMPLWQSTPIIMVTALSSKESLAKCIAAGADDFIGKPVNALELRSRVHSML 119 Query: 119 QMQKSKDENQFLD 131 ++++ D+ L Sbjct: 120 RIKQQYDQISHLS 132 >gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby] gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Corby] gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] Length = 226 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L++D + + GF V + + + + +++D + + F Sbjct: 4 SILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQ-VFDAIILDVMLPKLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + V L D I G GA+ +L KP N L +R + + + Sbjct: 63 -EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQ 121 >gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 233 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + ++ + +D + A EA E P +++D M G + Sbjct: 5 KILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMN-QPQLVILDIMMPGLDGM 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R ++V + L + I G GA+ +++KPF+ + ++ + Sbjct: 64 EVCRRIRAE---SNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRR 120 >gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD H + ++ + G+ A + EA +++D M + Sbjct: 1 MK-ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTTPDIALMILDVMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I V+++ +D+ + + + I G GA+ ++ KPFN + +R L + Sbjct: 60 G-IDVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 121 QKSK 124 + + Sbjct: 119 SQKQ 122 >gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + D ++V A + + + + +++D + + Sbjct: 2 RILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWD-FIQSFSYDLIILDVMLPKLSGT 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V L + G AGA+ +++KPF+ L +R L + Sbjct: 61 ALCQRLRDTGYMTPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRSN 120 >gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ +R + R D G+ VF A E E P+ +++D + + Sbjct: 3 KKILVIEDEESIRNIIRAFLEDAGYTVFVAGDGLEGVNKF-HEKNPDLVLLDLMLPKMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + L D + + G A A+ ++ KPF+ + + + + Sbjct: 62 FTVCEILRKESR---TPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLR 118 Query: 120 MQK 122 + Sbjct: 119 RIE 121 >gi|108763819|ref|YP_629338.1| sigma-54 dependent DNA-binding response regulator Nla19 [Myxococcus xanthus DK 1622] gi|34329413|gb|AAQ63909.1| mutant NtrC-like activator [Myxococcus xanthus] gi|108467699|gb|ABF92884.1| sigma-54 dependent DNA-binding response regulator Nla19 [Myxococcus xanthus DK 1622] Length = 482 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R L + VFEA + EA + L+ D ME + Sbjct: 12 RLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQL-ASGSIDLLLTDLKMEPMDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + V + E + R GA ++ KPF LR+ + + + Sbjct: 71 TLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALERAR 130 Query: 123 SKD 125 + Sbjct: 131 LQR 133 >gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CFN 42] gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CIAT 652] gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CFN 42] gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CIAT 652] gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CNPAF512] Length = 227 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ GF V EA E +E P+ L++D + G + Sbjct: 4 RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EIRLQERTPDLLILDWMLPGVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 63 ELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 ARPE 126 >gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 418 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD + + GF A S EA EK+ P+ +++D M + Sbjct: 35 SILIVDDNQNNCDLLNRRLERKGFRCAIALSGREALRQVEKQP-PDLILLDVMMPEMDGM 93 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ ++ V + + E +I+ GAN ++ KP + + +R Q Sbjct: 94 EVLDILRRNFNSVELPVLMVTAKNAHEDIISAFAQGANDYIEKPVDFPIMLARIRHHLQH 153 Query: 121 QKSKDENQF 129 ++ DE + Sbjct: 154 KRLDDELKR 162 >gi|83955851|ref|ZP_00964393.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1] gi|83839856|gb|EAP79033.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1] Length = 239 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK G A + E + E + +V+D M G Sbjct: 6 RILVVDDHSEIRKSVTSYLERNGMRASAAGNAVE-MDARLAEAHFDLIVLDVMMPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R G + + L D E IAG GA+ +L KPFN + L + + + + Sbjct: 65 SACRRLRKEG-HIPILMLTALGDDEDRIAGLDGGADDYLAKPFNPKELVARINAILRRTQ 123 Query: 123 S 123 Sbjct: 124 L 124 >gi|331002009|ref|ZP_08325529.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411805|gb|EGG91210.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon 107 str. F0167] Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + GF+V EA +A + ++ +++D M + F Sbjct: 5 KILVVDDEARMRKLVKDFLTIKGFIVLEAQDGEQALKVFDENKDIKLILLDVMMPKLDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + + V V L + + G + G + ++ KPF+ + L + + + Sbjct: 65 -ETLEVLRQYSKVPVIMLTARSEERDELLGYKLGVDEYITKPFSPKILVARVEAVLRRTI 123 Query: 123 SKDENQFLD 131 + E + + Sbjct: 124 GESEEKLVA 132 >gi|326802533|ref|YP_004320352.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326553297|gb|ADZ81682.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 236 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + + G+ V AT +A + KE N +++D + + Sbjct: 5 QRILLVEDEEHLLEAIKLNLELEGYKVTTATDGKKALKKF-KEERFNLIILDVMIPEIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F T+V + +L + E I G + GA+ +L+KPFN E L + L + Sbjct: 64 FQVAETIRLENTEVPIMFLTAKNTSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRRG 123 Query: 122 KSKDENQFLDA 132 D+ + L++ Sbjct: 124 MKGDDLKELNS 134 >gi|325272398|ref|ZP_08138793.1| osmolarity response regulator [Pseudomonas sp. TJI-51] gi|324102475|gb|EGB99926.1| osmolarity response regulator [Pseudomonas sp. TJI-51] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQ-MDRLLSREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACKRLRQHNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129 >gi|297571976|ref|YP_003697750.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932323|gb|ADH93131.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 226 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + F G+ V + EA + + +V+D + + Sbjct: 1 MTKVLIVEDDSAISGPLVRAFTREGYDVTSVATGQEAIDLVSSS--IDLMVLDLGLPDMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G + L + M+ G AGA+ ++ KPF L +R L + Sbjct: 59 GLDVARAARTEGQSCPILILTARAEEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 118 Query: 121 QKSKDE 126 S DE Sbjct: 119 SVSSDE 124 >gi|256828201|ref|YP_003156929.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfomicrobium baculatum DSM 4028] gi|256577377|gb|ACU88513.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfomicrobium baculatum DSM 4028] Length = 487 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 8/138 (5%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M + +L+VD +R++ G V A++ +A + + ++ D M Sbjct: 1 MTTAFHVLVVDDEPALREICEEALTGAGHAVTLASNGQDALGKLGAQG-FDLVISDLRMP 59 Query: 58 GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + ++ +R+ L DV + E + + GA ++ KPF+ + L +R Sbjct: 60 DMNGQDLLSQIRKRQL--DVDFLVMTGYGTTETAVDIMKNGAADYIAKPFDIKHLLLRVR 117 Query: 116 ELPQMQKSKDENQFLDAI 133 + + ++S+ E + L A+ Sbjct: 118 SILEQRRSRKEQEKLSAV 135 >gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] Length = 222 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ ++++ G + F A +A + + + +++D M + Sbjct: 1 MANILIVEDEKKMQEIIVEYMQRGGHICFTADDGIDALVVLKSNPM-DLMILDIMMPNLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F R+M +++ + L + + + G GA+ ++ KPF+ + L L Sbjct: 60 GFSVCKIAREM---SNLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALL 116 Query: 119 QMQKS 123 + Sbjct: 117 RRSSL 121 >gi|206564292|ref|YP_002235055.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198040332|emb|CAR56317.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E R + + P+ +V+D + G Sbjct: 7 VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALD-DGAPDLIVLDLMLPGEDGLT 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] Length = 235 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + +R + G+ A + +A ++ P+++++D M + Sbjct: 1 MK-ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQ-QPDFIILDIMMPELD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + +L + + + G GA+ ++ KPF +R ++ + Sbjct: 59 GYKVCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIV 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 5/135 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ + + + G+ + AT + + + +++D + Sbjct: 1 MKEILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKY-DLIILDLMLPNLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + + L + D + G GA+ ++ KPF E L +R++ Sbjct: 60 GIEICRRLRANKIT--TPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKIL 117 Query: 119 QMQKSKDENQFLDAI 133 Q E + +A+ Sbjct: 118 SRQVVISETKEREAV 132 >gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] Length = 1406 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD G V A + E E + +++D M + Sbjct: 1275 KRVLIVDDDIRNVFALASALEAHGLEVLYADNGREGIAKLEANEDIDLVLMDIMMPELDG 1334 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP D+ + L + AGA+ ++ KP + + L MR Sbjct: 1335 DATTRMIREMPQFADLPIISLTAKAMRGDRENSLAAGASDYVSKPVDLDHLLNVMRRWLD 1394 Query: 120 MQKS 123 KS Sbjct: 1395 RGKS 1398 >gi|330466349|ref|YP_004404092.1| stage II sporulation protein E [Verrucosispora maris AB-18-032] gi|328809320|gb|AEB43492.1| stage II sporulation protein E [Verrucosispora maris AB-18-032] Length = 1183 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + +R+ L + V AT EA E+ + ++ D M Sbjct: 586 RILVVDDNPDLREHVARLLGPT-WDVVTATDGVEAL-RVATEVAFDLVLTDVMMPRLDGF 643 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R P V + L + +AG GA+ +L KPF+ + L +R ++ Sbjct: 644 GLVAALRADPRTRYVPIVLLSARAGSAEEVAGLSVGADDYLTKPFSGQELIARVRANVEL 703 Query: 121 QKSKDE-NQFLDAI 133 + + + + L A+ Sbjct: 704 GQLRGQIIRRLRAL 717 >gi|304391595|ref|ZP_07373537.1| response regulator PleD [Ahrensia sp. R2A130] gi|303295824|gb|EFL90182.1| response regulator PleD [Ahrensia sp. R2A130] Length = 457 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD ++ F V A++ +A C+ + +++D M G+ Sbjct: 4 RILVVDDVEANVRLLEARLLAEYFEVVTASNGPDAIAICQAGRC-DVILLDVMMPGMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + + + G AGA+ FL KP + + ++ L ++ Sbjct: 63 EVCTRLKADPKTAHIPIIMVTALDQASDRVQGLDAGADDFLTKPVDDLAMTTRVKSLARL 122 Query: 121 QKSKDENQFLDA 132 + S DE + A Sbjct: 123 KHSMDELKLRAA 134 Score = 80.6 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +L+VD + + V T E + ++ + L Sbjct: 157 KILIVDDRASSYERSVNALTTE-HSVAVVTDPQEGLFRAADDDFDAIIISLGIENFDPLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + V + + + D +I G N ++ +P + LR +R + + Sbjct: 216 LCSQLRSLDRTRLVPILLVAQKEDQAVLIRAIDLGVNDYITRPLDVNELRARVRSQVRRK 275 Query: 122 KSKDENQ 128 + D+ + Sbjct: 276 RLNDQLR 282 >gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K G+ V + + + +++D + + Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNY-DVILLDLMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + ++G GA+ +L+KPF E L +R L + Sbjct: 60 GLEVARRLRES-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118 Query: 121 QKSKDE 126 + E Sbjct: 119 IAIETE 124 >gi|269839221|ref|YP_003323913.1| response regulator receiver protein [Thermobaculum terrenum ATCC BAA-798] gi|269790951|gb|ACZ43091.1| response regulator receiver protein [Thermobaculum terrenum ATCC BAA-798] Length = 139 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + R++ + G+ V EA+ EA E LP +++D+SM L Sbjct: 6 RVLVVDDDRVTRRIVSVKLSGLGYTVDEASDGQEALEMIASGELPTLVIVDQSMPRLTGL 65 Query: 61 EFIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R Q + + L E ++ G AG + +++KPF+ L +R + Sbjct: 66 ELVRAIRSHQDERVAALPIIMLTSHQSEEAIVRGLEAGVDDYVIKPFSPNELAARVRTVL 125 Query: 119 -QMQKSKDENQFLD 131 + Q++ + L Sbjct: 126 WRCQRAAGRREPLA 139 >gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + +F+ + +A + KE L + ++D + V F Sbjct: 4 NILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKL-DLAILDVMLPDVDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V L + + I G GA+ ++ KPF L ++ + Sbjct: 63 SICRQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRR 119 >gi|218437977|ref|YP_002376306.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218170705|gb|ACK69438.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 353 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD ++ + G+ V S +A E + P+ +++D M E Sbjct: 12 ILIVDDIPENLEILFKTLQEQGYEVRRVLSGQQALMVVEADP-PDLILLDVKMPHIDGYE 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE--LPQ 119 H++ + V +L + + R G ++ KPF+ E + + L Q Sbjct: 71 VCRHLKAQEKTAQIPVIFLSALHEVFDKVKAFRVGGVDYITKPFHLEEVLSRIETQLLIQ 130 Query: 120 MQKSKDENQFLD 131 QK + + L Sbjct: 131 RQKVLLQTEILQ 142 >gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ GF V EA E +E P+ L++D + G + Sbjct: 4 RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EIRLQERTPDLLILDWMLPGVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 63 ELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 ARPE 126 >gi|56414448|ref|YP_151523.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363369|ref|YP_002143006.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128705|gb|AAV78211.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094846|emb|CAR60379.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 213 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Query: 16 VGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGT 73 + + GF EA A E P+ +++D + G FI H+++ + Sbjct: 1 MVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSGLQFIKHLKREAMTR 59 Query: 74 DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLD 131 D+ V L + E + G GA+ ++ KPF+ + L ++ + + + ++ Sbjct: 60 DIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIE 117 >gi|109897312|ref|YP_660567.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699593|gb|ABG39513.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 235 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLLL+D + ++ + + G+ + A+ + + +++D + V Sbjct: 4 KSLLLIDDDQALTELLQEYLSAQGYTIHVASDGEAGLLAAKSGQHYDLIILDVMLPKVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++++ V L + D I G GA+ +L KPFN L ++ + + Sbjct: 64 F-EVLKRLRSTHVTPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRV 122 Query: 122 KSKDENQ 128 + Q Sbjct: 123 DIQAGLQ 129 >gi|124265864|ref|YP_001019868.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258639|gb|ABM93633.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 333 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V ++ G+ V ATS A E P+ +++D M G+ F Sbjct: 30 VLIVDDVPDNVSVLHDALDESGYTVLVATSGEAALERA-AHARPDVVLLDALMPGMDGFE 88 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + ++ + E + A AG ++ KP + + + Sbjct: 89 VARRLKRDAATAHIPIVFMTGLAETEHVEAAFEAGGVDYVTKPIRPREVIARIAAHVRGA 148 Query: 122 KSKDENQ-FLDA 132 + + + LDA Sbjct: 149 RQARQARSALDA 160 >gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 226 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + ++ GF V A + +A ++ + +++D + G Sbjct: 1 MTRVLVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGA-DIVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ + V + + + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCRQLRQ---TSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVL 116 Query: 119 QMQKSKDENQ 128 + ++D+ + Sbjct: 117 RRGVAEDDVE 126 >gi|296159566|ref|ZP_06842390.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890274|gb|EFG70068.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +VR + GF + E+E P+ +V+D M Sbjct: 5 VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V ++ I G GA+ +L KPF+ L + + + + Sbjct: 64 ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121 >gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K G+ V + + +++D + + Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNY-DVILLDLMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + I+G GA+ +L+KPF E L +R L + Sbjct: 60 GLEVARRLRES-KKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRR 118 Query: 121 QKSKDE 126 + E Sbjct: 119 IAIETE 124 >gi|288924824|ref|ZP_06418761.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] gi|288338611|gb|EFC76960.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] Length = 884 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 SLL++D + +R L + V +A E ++ +P+ ++ D M + Sbjct: 640 SLLVIDDNPDIRSYVMTLL-GNDYNVEQAADGREGLHKAMRD-VPDLIICDVMMPVMDGL 697 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F V+ + + + V L E+ + G GA+++L KPF+ E L+ +R L Sbjct: 698 EFCRRVKHDVITSHIPVLLLTARTLEEQRVEGYDYGADAYLTKPFSGEVLKSRVRNLLDN 757 Query: 121 QKSKD 125 +K Sbjct: 758 RKLMK 762 >gi|260770795|ref|ZP_05879724.1| two-component system response regulator OmpR [Vibrio furnissii CIP 102972] gi|260614032|gb|EEX39222.1| two-component system response regulator OmpR [Vibrio furnissii CIP 102972] Length = 240 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V + + + + +V+D + G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDPLLTRETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L ++ + + Q Sbjct: 65 SICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123 >gi|238921931|ref|YP_002935445.1| two-component system, OmpR family, KDP operon response regulator KdpE [Eubacterium eligens ATCC 27750] gi|238873603|gb|ACR73311.1| two-component system, OmpR family, KDP operon response regulator KdpE [Eubacterium eligens ATCC 27750] Length = 232 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 4/129 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ +R + + A + A P+ +++D + Sbjct: 1 MNKTQILVVEDDSPIRNLITTTLKTNNYRYLTAVNGESAISQ-TASHNPDIILLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++++ T+ + + + I AGA+ +L KPF+ + L +R Sbjct: 60 IDGV-EVIKKIRTWTNTPIIVISARTEDADKIEALDAGADDYLTKPFSVDELLARLRVTV 118 Query: 119 QMQKSKDEN 127 + + Sbjct: 119 RRLSLMQTD 127 >gi|218256920|ref|ZP_03474405.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM 18315] gi|218225884|gb|EEC98534.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM 18315] Length = 1312 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + + + ++V EA + EA E++ P+ ++ D M + F Sbjct: 1064 ILVVDDNRDIVWLIKETLSFE-YVVREAFNAEEALALMEQQT-PDLIITDIMMPSMDGFA 1121 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I+ ++ + + + +V + G GA+++L KPF+ L + L + Sbjct: 1122 LISRIKSDKFTRHIPLIVVSAKVSENEQAEGLDLGADAYLTKPFSSVVLHSVVNRLMANK 1181 Query: 122 KSKD 125 K Sbjct: 1182 KELK 1185 >gi|114798852|ref|YP_760979.1| response regulator PleD [Hyphomonas neptunium ATCC 15444] gi|114739026|gb|ABI77151.1| response regulator PleD [Hyphomonas neptunium ATCC 15444] Length = 455 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD R++ + V A + +A E ++E P +++D M G+ Sbjct: 4 RILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALEVAQREN-PEIILLDVMMPGMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + V + + E + G AGA FL KP + L + L + Sbjct: 63 EVCQRLKADPTTSYIPVVMVTALSEMEDRVKGLAAGAEDFLTKPVDDFLLNSRITALMRY 122 Query: 121 QKSKDENQFLDA 132 E + +A Sbjct: 123 NTVASELRQREA 134 Score = 47.5 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 12/116 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFE---ATS-VCEAREFCEKELLPNYLVIDE--SM 56 + +VD + G A A E + L++ Sbjct: 155 RIFIVDDDARSSGRLANTLRAQGHKATTLMEAGDMGELATERV------DVLILSLFARS 208 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 L+ IAH + P+ + V + D K + G GA+ + P +R+ L Sbjct: 209 FDPLKLIAHFKMNPVTRSISVILICDPHDKAKALRGLEIGASDMITIPIDRQELAA 264 >gi|167645462|ref|YP_001683125.1| response regulator PleD [Caulobacter sp. K31] gi|167347892|gb|ABZ70627.1| response regulator receiver modulated diguanylate cyclase [Caulobacter sp. K31] Length = 454 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + + V A A E LP+ +++D M G+ F Sbjct: 4 RILVVDDIEANVRLLEAKLSAEYYQVSVAYDGPTALAMAADE-LPDVILLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + V + IAG AGA+ FL KP + L +R L + Sbjct: 63 TVCRKLKEDPTTRHIPVVLVTALDGRADRIAGLEAGASDFLTKPIDDVMLFARVRSLTRF 122 Query: 121 QKSKDENQFLDA 132 + DE + +A Sbjct: 123 KLVIDELRQREA 134 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + + +A + ++I+ + +G Sbjct: 155 RVLVVDDNERQAQRVAAELAVE-HRPVVESDPVKA--QISAGGPVDLVIINAAAKGFDGL 211 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +R + + ++ D +++ G N L +P + + L ++ Q Sbjct: 212 RFAASLRSDERTRHLPILAMVDTDDRPRLVKALEIGINDILPRPIDPQELSARVKTQIQR 271 Query: 121 QKSKD 125 ++ D Sbjct: 272 KRYTD 276 >gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris MG1363] gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris MG1363] gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris NZ9000] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVLEF 62 +L+V+ + + + V A A E E+ + + +++D + + Sbjct: 5 VLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + +L +AG AGA+ ++ KPF E L +R + + Sbjct: 65 TVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122 >gi|83594261|ref|YP_428013.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577175|gb|ABC23726.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 250 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + R G V A A + L P+ L++D M + + Sbjct: 23 ILVVEDEPDIADILRAYLERAGMRVVSARDGRRALD-LHASLNPDLLLLDVQMPVMDGW- 80 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ D V L + G R GA+ +++KPFN + +R + + Sbjct: 81 RVLSELRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVRAVLRR 137 >gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 241 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 1/129 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ ++ + GF V AT+ E K L P+ +++D + G Sbjct: 8 ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARK-LRPDLILLDIMLPGESGIR 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R DV + + + E + G AGA+ ++ KPF + L + + + Sbjct: 67 VCQRIREEDEDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSDA 126 Query: 124 KDENQFLDA 132 + L+A Sbjct: 127 GHRGRVLEA 135 >gi|309810882|ref|ZP_07704683.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp. Ellin185] gi|308435188|gb|EFP59019.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp. Ellin185] Length = 225 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R G V +A C + +P+ +V+D + + Sbjct: 4 RVLVVDDDPTIARTLRINLKARGLDVETVGCGLDALSTC-ADAMPDLVVLDLGLPDLDGV 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +RQ+ + V V L + + + GA+ ++ KPF E L +R + Sbjct: 63 -DVLRQLRQSSSVPVIVLSARQEADDKVEALDEGADDYVTKPFGIEELMARVRAALRRGG 121 Query: 123 SK 124 ++ Sbjct: 122 AE 123 >gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 1010 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + + G+ V A + EA + E+ P +++D M + Sbjct: 892 RRILLVEDNTVNILTISDYLHSRGYTVAVANNGQEALDSIEQA-QPELILMDIQMPVMDG 950 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R MP +++ + L AGAN++L KP + L + E+ Sbjct: 951 IEATRRLRAMPAYSEIPIIALTALAMPGDRERCLAAGANAYLTKPISLRHLVQMIEEMV 1009 >gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|257440628|ref|ZP_05616383.1| KDP operon transcriptional regulatory protein KdpE [Faecalibacterium prausnitzii A2-165] gi|257196951|gb|EEU95235.1| KDP operon transcriptional regulatory protein KdpE [Faecalibacterium prausnitzii A2-165] Length = 236 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ VR + G+ A++ A P+ +++D + + Sbjct: 5 TILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPDIDG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 I +R + +++ + L + I GA+ +L KPF+ + L +R + Sbjct: 63 IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLN 122 Query: 123 SKDEN 127 + Sbjct: 123 LLASD 127 >gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme DSM 15981] gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme DSM 15981] Length = 231 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + GF V +A E E+ E + L+ID M G+ Sbjct: 1 MQTILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLESHDA-DLLIIDVMMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRTTLKVRE-NSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118 >gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|187778014|ref|ZP_02994487.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC 15579] gi|187774942|gb|EDU38744.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC 15579] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +RK+ + N G+ EA A + KE + ++ D M + Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKE-YIDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + + + F G R G + +++KP + + + L + Sbjct: 60 GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119 Query: 121 QKSKDENQ 128 + +E + Sbjct: 120 SQIINERR 127 >gi|18450333|ref|NP_569204.1| hypothetical protein pli0051 [Listeria innocua Clip11262] gi|16415834|emb|CAC42049.1| pli0051 [Listeria innocua Clip11262] Length = 240 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M+ +L+V+ +RK+ + + A + A P+ +++D + Sbjct: 1 MNKNASILVVEDDKAIRKLITTTLETRNYNFYTADTGNAALIQV-TSRQPDIIILDLGLP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++++ + V + + + I GA+ FL KPF+ E L +R Sbjct: 60 DMDGTT-IIQRVREWSQVPIIVVSARSEDSDKIVALDMGADDFLTKPFSVEELLARIRVS 118 Query: 118 PQMQ 121 + + Sbjct: 119 LRRR 122 >gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + +D F V A + E + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTKQTI 127 >gi|260172966|ref|ZP_05759378.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2] gi|315921245|ref|ZP_07917485.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695120|gb|EFS31955.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1355 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ L + ++V+EA++ E + E +P+ +V D M + Sbjct: 1107 RVLVVEDDDDMRQYIVSLLSQQ-YIVYEASNGKEGLKEAV-EQIPDLIVSDVMMPVMDGL 1164 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + V L + E + G A+ ++LKPF + L + L + Sbjct: 1165 ELCKAIKEEMITAHIPVVLLTAKALNEHIEEGYSVMADDYVLKPFAPKVLLAKLDSLIKN 1224 Query: 121 QKSKDEN--QFLDAI 133 + + LDAI Sbjct: 1225 RNRLRRIFCEKLDAI 1239 >gi|257095132|ref|YP_003168773.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047656|gb|ACV36844.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 120 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S R V + L + G+ V A S E + E LP+ +++D M G+ Sbjct: 4 KRILVVDDSPTERHVMKTLLSSNGYEVITAESGEEGIAKAKSE-LPDLILMDVVMPGLNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + ++ V + I G R GA +L+KP N + L + L Sbjct: 63 YQATRTLTRDEATRNIPVIVCTTKGQETDKIWGLRQGAQDYLVKPVNGQELLAKIAAL 120 >gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 220 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + G V +A E + P+ +++D + G+ Sbjct: 2 KILVVEDDRKISHLLELELTHEGHEVKVVGDGYDALIEVE-DFKPDVVILDIMLPGLSGK 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R D+ + L D + + + GA+ +++KPF+ E L ++ + + ++ Sbjct: 61 EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRRKE 120 Query: 123 SKDE 126 K+E Sbjct: 121 KKEE 124 >gi|26989126|ref|NP_744551.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|148548500|ref|YP_001268602.1| two component transcriptional regulator [Pseudomonas putida F1] gi|24983960|gb|AAN68015.1|AE016434_6 DNA-binding response regulator OmpR [Pseudomonas putida KT2440] gi|148512558|gb|ABQ79418.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 246 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF+ L + + + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum WAL-14163] gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673] gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum WAL-14163] gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673] Length = 231 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+ D + + GF V +A EA E + + N ++ID M G+ Sbjct: 1 MQSILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGFEALELLQNHSV-NLMIIDVMMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRTTLKVRE-TSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRR 118 >gi|302340470|ref|YP_003805676.1| response regulator receiver sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637655|gb|ADK83082.1| response regulator receiver sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 365 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + F AT A +E + +++D M + F Sbjct: 9 RILIVDDVYRNIQLAGAILKQENFHFSFATDGNTAL-RVAREGGVDLILLDIMMPDLDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ P D+ V +L + D E ++ G GA +L KPF L +R + Sbjct: 68 SVCSLLKENPETADIPVIFLTAKNDTESIVRGFDLGAVDYLTKPFQAAELLARVRTHVHL 127 Query: 121 QKSKDENQFLDA 132 + ++ + + +A Sbjct: 128 RITERKLKEANA 139 >gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis 315-B] gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis 315-B] gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+V + G V EA +A E KE + +V+D M + Sbjct: 1 MFRILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKV-KENDFDVIVMDIMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ +++ D+ V L + + G G + ++ KPF+ + L + + Sbjct: 60 GFSSY-KEIKKIKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNR 118 Query: 121 QKSKDENQFL 130 N L Sbjct: 119 NNKTTNNDNL 128 >gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM 15053] gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM 15053] Length = 233 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + G+ V +A EA + + E + + L+ID M + Sbjct: 3 MSKILVCDDDREIVEAIDIYLTQEGYEVLKAYDGEEALKVLQSEKV-DLLIIDVMMPRLD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 62 GIRATLKIREQN-NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 120 >gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 676 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ V K+ + D ++V A + + + +++D + + Sbjct: 2 RILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLV-SSFNYDLIILDVLLPELDGI 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R + V ++ D + IAG AGA+ ++ KPF E L +R L + Sbjct: 61 KFCQQLRAQEYT--LPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRR 118 Score = 97.2 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L VD + + + + + E + + E P+ L++D SM Sbjct: 539 RKILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDEN-PDLLLLDISMPQFTG 597 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR+ P + + + + A +AG ++ + K + L + + Sbjct: 598 IELCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMK 657 Query: 120 MQKSKD 125 + Sbjct: 658 RSYLQQ 663 >gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|165932901|ref|YP_001649690.1| response regulator PleD [Rickettsia rickettsii str. Iowa] gi|165907988|gb|ABY72284.1| GGDEF family protein [Rickettsia rickettsii str. Iowa] Length = 450 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GFEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 60.6 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P+ ++I ++E + Sbjct: 152 KKILLINDDVVQTKNIKQMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208 Query: 62 FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + V + + E ++ G G N + + P L +R Sbjct: 209 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268 Query: 119 QMQKSKDENQ 128 + ++ +D + Sbjct: 269 RRKQYQDNLR 278 >gi|221069658|ref|ZP_03545763.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220714681|gb|EED70049.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 249 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 8/138 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-----LPNYLVIDESMEG 58 LL+++ + ++ + G V E + LP+ +++D + Sbjct: 12 LLMIEDDVRLAQMVSDYLGNNGLEVTHMADGKSGLEQLQPSDGGSVELPDLVILDLMLPD 71 Query: 59 VLEF--IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R MP V V L + D I G GA+ +L KPF L +R Sbjct: 72 MDGLEVCRRIRSMPGAPAQVPVLMLTAKGDPMDRIIGLELGADDYLPKPFEPRELLARIR 131 Query: 116 ELPQMQKSKDENQFLDAI 133 + + + + + +A+ Sbjct: 132 AILRRKGGESQAAPANAV 149 >gi|59713364|ref|YP_206139.1| transcriptional regulator SyrB [Vibrio fischeri ES114] gi|59481612|gb|AAW87251.1| probable transcriptional regulator SyrB [Vibrio fischeri ES114] Length = 221 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + + D G+ V A EF + + +++D + + Sbjct: 1 MSRILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHS-IDLVLLDVMLPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + L D M+ G +AGA+ F+ KPFN L + + + Sbjct: 60 GYQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILRR 118 Query: 121 QKSKDENQ 128 + + Q Sbjct: 119 VGLERQRQ 126 >gi|260063704|ref|YP_003196784.1| two-component system response regulator [Robiginitalea biformata HTCC2501] gi|88783149|gb|EAR14322.1| two-component system response regulator [Robiginitalea biformata HTCC2501] Length = 229 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 57/134 (42%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +LL++ + + + G+ V + E ++ + +++D + G+ Sbjct: 3 NRILLIEDEYAIASFVTQGLQESGYAVAVCYDGEKGLEML-QDGDFDLVILDIVLPGMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R G D+ + L E ++ G +GA+ +L+KPF + L +R L + Sbjct: 62 REVARTIRGQ--GLDLPILMLTALGSTENVVRGLDSGADDYLVKPFKFKELEARVRALSR 119 Query: 120 MQKSKDE-NQFLDA 132 + S N+ L A Sbjct: 120 RRSSGPRGNRTLSA 133 >gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733] gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733] Length = 218 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + K+ G+ V+ + EA + E++ + +++D + + Sbjct: 1 MK-ILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQE-FDLVLLDIMLPEID 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V D+ V +L + ++G R+GA ++ KPF+ E L + + + Sbjct: 59 GY--EVFAYMWEYDLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 116 Query: 121 QKSKDENQFLD 131 D N+ L Sbjct: 117 NGKNDSNKLLK 127 >gi|77919754|ref|YP_357569.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545837|gb|ABA89399.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter carbinolicus DSM 2380] Length = 451 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 5/131 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R + ++V EA + EA EKE + + ++ D M + Sbjct: 6 KKILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKE-MFDVVLCDVCMPTLDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ +R + V + + + + + GA ++ KPF + + +R+ + Sbjct: 65 PGFLKELRARNVSPT--VIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKAEE 122 Query: 120 MQKSKDENQFL 130 + ++EN L Sbjct: 123 RLRLREENGLL 133 >gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLLV+ + + + GF V T+ +A E +E P +V+D + G + Sbjct: 4 TLLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARRE-QPALVVLDWMLPGKSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + + + + I G GA+ ++ KPF+ L +R + + Sbjct: 63 EVCKELRQSSACG---IIMVTAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVLRR 119 >gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 222 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + ++ G+MV A A ++ P+ +++D M G+ F Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQR-RRPDLILLDAMMPGMDGFE 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q P +++ V ++ D E ++ G AGA +++KP + + + Sbjct: 72 TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131 Query: 122 KSKDENQ 128 ++ + Sbjct: 132 RTLQSAR 138 >gi|296169900|ref|ZP_06851512.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895456|gb|EFG75158.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D + + R + G+ V A+S A E P+ +V+D + Sbjct: 1 MTRVLVIDDEPQILRALRINLSVRGYEVITASSGAGAL-RAAAEHKPDVVVLDLGLPDIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +A +R V L D + AGA+ ++ KPF + +R Sbjct: 60 GIDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAV 116 Query: 119 QMQKSKDENQF 129 + + E + Sbjct: 117 RRNTAASELEQ 127 >gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 247 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + ++ +V+D M G+ Sbjct: 18 MNKILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 77 GF-ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 135 >gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+++ + + N G+ V + + + KE + +++D + + Sbjct: 1 MKGKILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMA-KENDYDLILLDIMLPSM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +R++ +D+ V L + + + G GA+ ++ KPF E L +R + Sbjct: 60 NG-IEILRRLRESSDIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALK 118 Query: 120 MQ 121 + Sbjct: 119 RK 120 >gi|222081273|ref|YP_002540636.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725952|gb|ACM29041.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 241 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ F D G+ V A++ E C ++ + +++D + G + + Sbjct: 11 VLVVDDDPRIRQMLTRYFEDEGYAVSTASNGLE-MRACLQQENFDAILLDWVLPGGKDGL 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ +DV + L D I G GA+ ++ KPF+ + ++ + + ++ Sbjct: 70 DLAREIRAQSDVPIIMLTGRDDVVDRIVGIEVGADDYIAKPFHLREVHARLKSILRRRQ 128 >gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905] gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD +R++ + + G V EAT +A E + + +++D M + Sbjct: 1 MTKLLMVDDDAHIRELVKVFLQNEGLDVIEATDGVDALSKLASEKV-DMVIMDIMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R TD+ + L + + + + G G + +L+KPF L ++ + Sbjct: 60 GWALCEEIR--SYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSIL 117 Query: 119 QMQK 122 + + Sbjct: 118 KRYR 121 >gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51] gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 2/131 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+++ + + G+ V +A E E + +++D + + Sbjct: 7 QSILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETG-RFDLILLDVMLPKLNG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ + V + L ++G +GAN ++ KPF E L +R + Sbjct: 66 -TEVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNT 124 Query: 122 KSKDENQFLDA 132 + L A Sbjct: 125 APLSSTEVLSA 135 >gi|89076062|ref|ZP_01162422.1| osmolarity response regulator [Photobacterium sp. SKA34] gi|89048214|gb|EAR53796.1| osmolarity response regulator [Photobacterium sp. SKA34] Length = 239 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLFEQGFQVRSVANGEQ-MDRLLARETFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 65 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124 Query: 123 SKD 125 + Sbjct: 125 IEA 127 >gi|317474353|ref|ZP_07933627.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316909034|gb|EFV30714.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1320 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+V+ + ++ D + V+ A EA + KE + +V D M + Sbjct: 1067 LIVEDNLEMQDFISKRLMDK-YDVYRAADGLEALKVL-KEFDIDIVVSDIMMPNMDGMEL 1124 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++++ + + V L + D E I G GA++++ KPF+ E L ++ L +K Sbjct: 1125 LKNIKETVEYSHIPVILLSAKSDLESRINGLELGADAYIEKPFSLEYLMAQIQNLLMNRK 1184 Query: 123 SKDEN 127 S E Sbjct: 1185 SIKEL 1189 >gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis ZC1] gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis ZC1] Length = 233 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 59/128 (46%), Gaps = 7/128 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L +D + + F+ TS+ EA +F E+E + + +++D M + Sbjct: 1 MKTILCIDDEPRMLDLLTLYLEPL-FLCRAMTSIQEALDFLEEEHV-DLVLLDIMMPEMN 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ DV + L + + ++ G GA+ ++LKPF+ E L + + Sbjct: 59 GWQVCQEIRK---FWDVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVL 115 Query: 119 QMQKSKDE 126 + S+++ Sbjct: 116 RRTISEEK 123 >gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 235 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ D + + + + VF+ + + E E L + ++D + + Sbjct: 6 TNILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERL-DLAILDVMLPDMDG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V L + + I G GA+ ++ KPF L ++ + Sbjct: 65 FSICQQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 5/118 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + D + + A E + + +++D + +E Sbjct: 4 LLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWD-FITAFDYDLILLDVMLPKLNGIEL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ G + V L + G AGA+ +++KPF+ + L +R L + Sbjct: 63 CQRLRQR--GYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRR 118 >gi|39995480|ref|NP_951431.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982243|gb|AAR33704.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 461 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD R++ + + + A EA + E + ++ D M+G+ Sbjct: 10 TILIVDDERGQREILQTILEGERYETTTAAGGQEALALLD-EREFDVILTDLKMQGMSGM 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + + GA +L KP R+TL +R + + Sbjct: 69 ELLERLLAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLLLTLRRAVERVR 128 Query: 123 SKDENQFL 130 EN+ L Sbjct: 129 LLKENRAL 136 >gi|332829438|gb|EGK02087.1| hypothetical protein HMPREF9455_01721 [Dysgonomonas gadei ATCC BAA-286] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 5/135 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + ++ ++FGF V A + L + ++ D + Sbjct: 1 MKKILVIEDEKRIAELLGKGLSEFGFEVTLAFDGDTG-KRLISSNLYDLIITDIILPHHN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E V+ V + L + + G AGA+ +++KPF+ L + L Sbjct: 60 GFEITRFVK--EKYLHVPIIMLTALGATDDKLDGFDAGADDYMVKPFDLRELNARINVLL 117 Query: 119 QMQKSKDENQFLDAI 133 + + EN+ D + Sbjct: 118 KRNSNHPENKVPDEL 132 >gi|327396459|dbj|BAK13880.1| transcriptional regulator BaeR [Pantoea ananatis AJ13355] Length = 230 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ V G+ V A++ E + P+ +++D + + Sbjct: 4 KRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEQVGR-WQPDLILLDVMLPVMNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +A +R+ D V + D I R GA+ +++KP++ + ++ + + Sbjct: 63 TEVLAAIRRSG---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RARQAK 125 >gi|313499514|gb|ADR60880.1| OmpR_2 [Pseudomonas putida BIRD-1] Length = 246 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF+ L + + + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|291566707|dbj|BAI88979.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 501 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + L G+ V ++ + A LP+ +++D + G+ E Sbjct: 13 ILVVDDQPENLHLLSSLLRQVGYNVRQSLNAEMALTSVGA-KLPDLILLDVRIPGMSGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H++ + + + +L D + ++ G + G ++ KPF+ + + ++ Sbjct: 72 LCRHLKSSENTSKIPIIFLSALNDIDSIMEGFQVGGVDYITKPFHNSEVLIRVNTQLRLY 131 Query: 122 KSKDENQF 129 + + + + Sbjct: 132 QLQKQLEL 139 >gi|262199148|ref|YP_003270357.1| Fis family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082495|gb|ACY18464.1| two component, sigma54 specific, transcriptional regulator, Fis family [Haliangium ochraceum DSM 14365] Length = 459 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 53/132 (40%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L++D + +R+ H + G V A S E + +++ D M+G+ Sbjct: 1 MATILIIDDNETIREGLAHTISRMGHEVLTAASGREGLARFRERPETGFVITDLKMDGMD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +V + E + + GA FL KPF+ E +R + ++ Sbjct: 61 GVAVLRALSEDAPEVPTMIITAYGTVETAVEAMKLGAFDFLTKPFSPELVRLKVARALEL 120 Query: 121 QKSKDENQFLDA 132 +++ L+A Sbjct: 121 FEARSARARLEA 132 >gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 236 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ + + G++V A EA + + +++D + Sbjct: 8 RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQE-FDLIILDLMLPYVDGY 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR + + + L + I G AGA+ +L KPF+ + L ++ + + Sbjct: 67 EVAREVRAVS--PQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKR 124 Query: 121 QK 122 ++ Sbjct: 125 KQ 126 >gi|225853711|ref|YP_002735223.1| response regulator SaeR [Streptococcus pneumoniae JJA] gi|225724034|gb|ACO19887.1| response regulator SaeR [Streptococcus pneumoniae JJA] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E +K+ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L + ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGCETELIS 131 >gi|306521077|ref|ZP_07407424.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 233 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 11/133 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + +R++ L G+ V AT+ EA + + +++D M Sbjct: 7 KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDST--IDLIILDVVMPVKTG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ T + +L + + G AG + +L KPF+ L ++ L + Sbjct: 65 FVACNEIREK---TTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLR 121 Query: 120 M----QKSKDENQ 128 Q + E + Sbjct: 122 RYYIYQGKEKERE 134 >gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] Length = 234 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + R G+ V A E +++D + + Sbjct: 17 RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHES-FELVILDLGLPRLDGL 75 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V L IAG AGA+ +L+KPF+ L+ +R L + Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 123 SKDE 126 ++ E Sbjct: 136 NRPE 139 >gi|47664|emb|CAA30934.1| unnamed protein product [Salmonella enterica subsp. enterica serovar Typhimurium] gi|587570|emb|CAA55076.1| ompR [Salmonella enterica subsp. enterica serovar Typhi] Length = 239 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|329296063|ref|ZP_08253399.1| winged helix family two component transcriptional regulator [Plautia stali symbiont] Length = 224 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G + EA + P+ +++D + Sbjct: 1 MTTILIVEDEKEIRRFVRLALESEGLKIVEAEQLQRGL-IEAATRKPDLVILDLGLPDGD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 FI VRQ + + V L D + I AGA+ +L KPF L +R Sbjct: 60 GNAFIREVRQ---WSSMPVIVLSARSDEQDKIEALDAGADDYLTKPFGIGELLARVRVAL 116 Query: 119 QMQKSKD 125 + + Sbjct: 117 RRHQRSQ 123 >gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+ D + ++ R+ GF V EA EA E+E + + ++D M Sbjct: 2 NILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETV-DLAIVDVMMPNKDGY 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R D+ V L + + G +AG + +L+KPF + L F ++ L + Sbjct: 61 ELCREIR---RYYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRR 117 >gi|150003189|ref|YP_001297933.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|254882475|ref|ZP_05255185.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319640424|ref|ZP_07995146.1| sensor protein [Bacteroides sp. 3_1_40A] gi|149931613|gb|ABR38311.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|254835268|gb|EET15577.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387911|gb|EFV68768.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1386 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLV+ + + + L + + + +A + EA E K+ + + +V D M + Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEV-DLIVSDVMMPEMDGM 1193 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E + G +GA+ ++ KP L + L + Sbjct: 1194 ELCRRVKTQFETCHIPLILLTAKTSDEDHVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253 Query: 121 QK 122 +K Sbjct: 1254 RK 1255 >gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVLEF 62 +L+V+ + + + V A A E E+ + + +++D + + Sbjct: 5 VLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + +L +AG AGA+ ++ KPF E L +R + + Sbjct: 65 TVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122 >gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241] gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W] gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293] gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241] gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W] gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293] gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|326335904|ref|ZP_08202081.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691868|gb|EGD33830.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 241 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + GF V A + E + K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPY-DMCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F V + +L E +I G ++GA+ +L KPF+ E L +R + Q + Sbjct: 65 FTLAKEIREKNEKVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQRK 124 >gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20] Length = 238 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDES 55 +LLV+ R + GF V EA A E E P + +++D Sbjct: 5 TRILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLM 64 Query: 56 ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + E +R + V V L + I G GA+ ++ KP++ L Sbjct: 65 LPRLDGTEVCTRIR---RSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLAR 121 Query: 114 MRELPQMQKSKD 125 ++ + + ++ Sbjct: 122 LKAVLRRSRAAA 133 >gi|326318213|ref|YP_004235885.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375049|gb|ADX47318.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 361 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V ++ G+ V ATS A + +P+ +++D M G+ F Sbjct: 30 VLVVDDVPDNLAVLHDALDESGYTVLVATSGETALARA-AQAMPDVVLLDAMMPGMDGFE 88 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + + ++ + E + A AG ++ KP + M Q Sbjct: 89 VARRLKAQPATAHIPIIFMTGLTETEHLEAALAAGGVDYVTKPIKPREVLARMHVHLQGA 148 Query: 122 KSKDENQF 129 + ++ Sbjct: 149 RRARQDMR 156 >gi|260642598|ref|ZP_05416521.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260621410|gb|EEX44281.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1310 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + + + ++ V A+ EA + P+ +V D M + Sbjct: 1059 TVLVVDDNPDLTDFLKKSLGEYFKRVVIASDGAEALQLIRSHT-PDIIVSDVMMPRMNGY 1117 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ + + + L D + ++G + GA+++L KPF E L + + Sbjct: 1118 ELCKSIKEDITISHIPIILLTARDDQQSQLSGYKNGADAYLTKPFEIEMLMEIICNRLKN 1177 Query: 121 QKSKDENQFLDA 132 ++S + ++L+A Sbjct: 1178 RESTKK-RYLNA 1188 >gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78] gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78] Length = 1928 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + G V A + E E E+ +++D M + Sbjct: 1808 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1867 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+MP + + L + +GA+ ++ KP + + L A+ + + Sbjct: 1868 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLRT 1927 Query: 121 Q 121 + Sbjct: 1928 K 1928 >gi|239909145|ref|YP_002955887.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239799012|dbj|BAH78001.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 581 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL + + R G V A EA E+ + +++D M L Sbjct: 460 RILLAEDEPVNRIFTVRALQKLGHAVDAAADGREALAMLERGAY-DLVLMDIQMPRLNGL 518 Query: 61 EFIAHVRQ---MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +R + + V L G AG + ++ KPF L AM Sbjct: 519 EATRRIRSGQVEGVPPTMPVVALTAYAMEGDRQKGLEAGMDEYVTKPFEPAELTAAMERA 578 Query: 118 P 118 Sbjct: 579 L 579 >gi|291288622|ref|YP_003505438.1| response regulator receiver modulated diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290885782|gb|ADD69482.1| response regulator receiver modulated diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 312 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 8/135 (5%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDF-GFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M + +L+VD + KV ++ D + + A S EA E+ K +P+ +++D Sbjct: 1 MKNKKMHVLIVDDNPQNLKVLGNILKDNTPYGLAFAMSGKEALEYLVKN-VPDMVLLDVM 59 Query: 56 MEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 M + F + + V ++ + + E ++ G + G ++ KPFN L Sbjct: 60 MPDMDGFEVCKTLHARAETKGIPVIFITAKSEPEDIVKGFQMGGVDYVTKPFNEAELLMR 119 Query: 114 MRELPQMQKSKDENQ 128 + ++++++D + Sbjct: 120 INTHMELKRARDLLE 134 >gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] Length = 222 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + GF V A+ A + + E +V+D S+ + Sbjct: 2 RILLVEDHDELSLWLQKALSSSGFAVDLASDGAIADQLLQTERY-ELVVLDVSLPRMSGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V L D + G AGA+ +L KPF+ L +R L + + Sbjct: 61 EVLAQMRKRHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALLRRSQ 120 Query: 123 SK 124 + Sbjct: 121 GQ 122 >gi|219851955|ref|YP_002466387.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219546214|gb|ACL16664.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 576 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ S ++ R++ G+ VF AT+ +A + E+ P+ L+ D M + Sbjct: 13 KVVIVEDSPTQQEYLRYILEKHGYTVFAATNGQQALDLI-GEVRPDLLISDVIMPVMNGY 71 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P ++ V L D + + ++GA++F+ KP+N E L +R++ Sbjct: 72 DLCRAIKSDPASQEIPVILLTALSDTKDVALALQSGADNFITKPYNEEYLILRIRQILAP 131 Query: 121 QKSKD 125 +++ Sbjct: 132 ERALR 136 >gi|254413669|ref|ZP_05027439.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179776|gb|EDX74770.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 810 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD S R L + G+ V + + +A + + P+ +++D M + Sbjct: 22 TILIVDDSPDSLSFLRKLLAEQGYTVRVSLNGRQALQSVDLMP-PDLILLDILMPDIDGY 80 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + ++ + + GA ++ KP + + + + Sbjct: 81 QVCQQLKANPETQAIPIIFISARKETFDKVKAFEIGAADYISKPIATQEVLVRIEHQLHI 140 Query: 121 QKSKDENQFLDA 132 + + + + +A Sbjct: 141 LRLQRQLKQENA 152 >gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294] gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056] gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058] gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059] gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294] gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 319 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|150007457|ref|YP_001302200.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|255013954|ref|ZP_05286080.1| two-component system response regulator [Bacteroides sp. 2_1_7] gi|262382003|ref|ZP_06075141.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298375433|ref|ZP_06985390.1| response regulator DrrA [Bacteroides sp. 3_1_19] gi|149935881|gb|ABR42578.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|262297180|gb|EEY85110.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298267933|gb|EFI09589.1| response regulator DrrA [Bacteroides sp. 3_1_19] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 4/121 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ V A S EA + + N L++D M + Sbjct: 4 TRILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK--DLTVYNLLLLDVMMGEISG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ + + +L + M+ G GA+ ++ KPF+ + ++ + + Sbjct: 62 FKMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|119485560|ref|ZP_01619835.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp. PCC 8106] gi|119456885|gb|EAW38012.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp. PCC 8106] Length = 501 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L++D ++ L G+ V A S A E + LP+ +++D M + Sbjct: 7 NILIIDDHLNNLRMLSTLLRQRGYQVRNARSGSIALETVKVS-LPDLILLDIKMPDMSGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P ++ V ++ + + G N ++ KPF + + + + Sbjct: 66 EVCRQLKASPETCEIPVIFISALETTFDKVKSFKVGGNDYITKPFQADEVLARVENQLTI 125 Query: 121 QKSK----DENQFLD 131 Q+ K +NQ L Sbjct: 126 QRQKKLLLKQNQQLK 140 >gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F + V EA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +++ + Sbjct: 119 SRQASKK 125 >gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQML-SMYEIDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQQVREHNNT--VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RSSFQQ 125 >gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 233 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +RK+ RH G+ V EA EA E+ EKE V+D M Sbjct: 11 RVLVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEP-IELAVVDIMMPNKDGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ D+ V L + + AG RAG + +L KPF + L F ++ L + Sbjct: 70 QLCREIRED---YDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRR 126 Query: 121 QK 122 + Sbjct: 127 YQ 128 >gi|328956993|ref|YP_004374379.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673317|gb|AEB29363.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 230 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME-- 57 M+ +L+++ + + G+ + E E + +++D + Sbjct: 1 MNKILIIEDEKNLARFVELELKHEGYATEVRYNGRTGLEAAVAEDAHWDVILLDLMLPEL 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ +RQ+ ++V + + ++G GA+ +++KPF E L +R L Sbjct: 61 NGIDVCRRIRQV---SNVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAL 117 Query: 118 PQMQKSKDEN 127 + + + E Sbjct: 118 FRRIEIESEQ 127 >gi|325478465|gb|EGC81579.1| putative transcriptional activator protein CopR [Anaerococcus prevotii ACS-065-V-Col13] Length = 223 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 5/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + ++ + + G++ A EA + E + +++D ++ Sbjct: 2 KVLIVEDERKLLRLLKEGLDLLGYVTDVAKDGEEALDLAYVECY-DIIILDINLPKKDGF 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ +V + L D + + G GAN ++ KPF+ + L MR L + Sbjct: 61 EVLRDIRQ--FNKEVNIIMLTARSDIDDRVKGLDCGANDYMTKPFDLKELDARMRSLLRR 118 Query: 121 QKSKDENQ 128 + ++E + Sbjct: 119 KSIQEETE 126 >gi|323484833|ref|ZP_08090189.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323693799|ref|ZP_08107993.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401829|gb|EGA94171.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323502146|gb|EGB18014.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 233 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + +V + G+ V A A E + + +++D + ++ Sbjct: 5 RTILLVDDEEKIVEVLQAYLEKAGYEVLCAYDGAAAMELF-RNNDISLILLDLMLPDIMG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR + V + L + + +I G R GA+ ++ KPF+ T+ + + Sbjct: 64 EEICRMVRAVSR---VPIIMLTAKTEENDLIKGLRLGADDYIFKPFSPRTVVAKAEAVLR 120 Query: 120 MQKS 123 +S Sbjct: 121 RVES 124 >gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 226 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L++D + ++ + GF V +T + E +E P+ L++D + + Sbjct: 2 KILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREK-PDLLLLDWMLPKISGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ D+ V L + + I G GA+ ++ KPF+ + L + + + Sbjct: 61 DILKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRR 120 Query: 121 QKSKDENQ 128 + D++Q Sbjct: 121 YRISDKSQ 128 >gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1] gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CC 2a] gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides xylanisolvens SD CC 1b] gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1] gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CC 2a] gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides xylanisolvens SD CC 1b] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ V + + + G+ A + + ++ D + + Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + L + G AGA+ +++KPF+ L ++ L + Sbjct: 60 GFELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119 >gi|229591084|ref|YP_002873203.1| oxidative stress related two component system, transcriptional regulator [Pseudomonas fluorescens SBW25] gi|229362950|emb|CAY49878.1| oxidative stress related two component system, transcriptional regulator [Pseudomonas fluorescens SBW25] Length = 247 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ F V A + + + + +V+D + F Sbjct: 11 RVLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQ-AFDVVVLDVLLPDGDGF 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 Q+ ++ V L + + G GA+ ++ KPF L + + + Q Sbjct: 70 -ELCNQLHRRSNTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRRQ 127 >gi|239616845|ref|YP_002940167.1| response regulator receiver modulated serine phosphatase [Kosmotoga olearia TBF 19.5.1] gi|239505676|gb|ACR79163.1| response regulator receiver modulated serine phosphatase [Kosmotoga olearia TBF 19.5.1] Length = 381 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D VR + + + G+ V E + + + E P+ +++D + + Sbjct: 1 MKRVLVIDDDRTVRMLLKVILKKAGYDVVECANGKTSLKKAES-FKPDLILLDLMLPDIN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + DV + L D E + R+GA F+ KPF E + +R Sbjct: 60 GLQLLETFTSKENLKDVPIIVLTGSTDEENKLTALRSGAVDFITKPFLSEEVLLRVRTQL 119 Query: 119 QMQKS 123 ++ Sbjct: 120 RIHSL 124 >gi|160886472|ref|ZP_02067475.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483] gi|156108357|gb|EDO10102.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483] Length = 1362 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + + + F ++ A + EA E KE + ++ D M G+ Sbjct: 1113 TILLVDDNKEMVDYLKDNFKSE-YITLIAGNGEEALEMM-KEQKVDLILSDVMMPGIDGI 1170 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 V++ + V L + E AG +AGA+ ++ KPF+ L+ + + + Sbjct: 1171 KLCEIVKKNMQTCHIPVILLSAKGSLEAQTAGIQAGADDYIPKPFSINLLKGKINNILKA 1230 Query: 120 MQKSK 124 Q+ + Sbjct: 1231 RQRLR 1235 >gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 219 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + R G+ V A E +++D + + Sbjct: 2 RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHES-FELVILDLGLPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V L IAG AGA+ +L+KPF+ L+ +R L + Sbjct: 61 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120 Query: 123 SKDE 126 ++ E Sbjct: 121 NRPE 124 >gi|291549052|emb|CBL25314.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ +R+ + G+ VF+A E E EKE + +ID M + Sbjct: 6 VLIVEDDKEIREGVQIYLQSQGYKVFQAADGIEGLEVLEKEE-IHLAIIDIMMPRMDGIR 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ D V L + + I G GA+ ++ KPF L + + + Sbjct: 65 MTMKLREKY-DFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYR 122 >gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] Length = 239 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ V + + V A +A + +E P +++D + + Sbjct: 7 KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEK-PTLILLDWMLPVYDGM 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +DV + L + + + G + +L KPF E L +R + + Sbjct: 66 TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122 Query: 121 QKSKDEN 127 + + Sbjct: 123 LEKMRQQ 129 >gi|256839824|ref|ZP_05545333.1| two-component sensor histidine kinase [Parabacteroides sp. D13] gi|256738754|gb|EEU52079.1| two-component sensor histidine kinase [Parabacteroides sp. D13] Length = 968 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L+V+ + + L N + + A + E E E +P+ ++ D M + Sbjct: 715 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIA-AEQMPDLILTDLMMPEM 772 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 VR+ + + + + + ++ + G GA+++L KPFN E L + +L Sbjct: 773 DGYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKL 832 Query: 118 PQMQKSKDE 126 + ++ E Sbjct: 833 LEQRRLLRE 841 >gi|255008379|ref|ZP_05280505.1| putative two-component response regulator [Bacteroides fragilis 3_1_12] gi|313146101|ref|ZP_07808294.1| two-component system response regulator [Bacteroides fragilis 3_1_12] gi|313134868|gb|EFR52228.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 55/133 (41%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMNISSY--HLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMANILKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + D + + + Sbjct: 123 TATSDMEKVPEQL 135 >gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|255690604|ref|ZP_05414279.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM 17565] gi|260623875|gb|EEX46746.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM 17565] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 52/129 (40%), Gaps = 4/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + G+ V A S EA + +++D M + Sbjct: 4 TRILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKL--DICSYQLILLDVMMGEISG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 FKMANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLR 121 Query: 120 MQKSKDENQ 128 + + + Sbjct: 122 RTAAAETER 130 >gi|215433475|gb|ACJ66703.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1] Length = 2151 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +G V A S E E EK +++D M + Sbjct: 2016 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESAREGLEQLEKAADIELVLMDVMMPEMDG 2075 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+M + + L + AGA+ ++ KP + E L +R Sbjct: 2076 YQAMRAIRRMERFAHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 2134 Score = 46.0 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 4/112 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + R+ L + E E + +V+D + + Sbjct: 1872 LLIVEDDPVHRQALLELLGSEDVETVAVGTAAE-ALAALAERRFDCMVLDLGLPDMPGAE 1930 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 I + + + R A + ++K + E L Sbjct: 1931 LIRRIHEAHGAGGPPLIVYTGRELSRAQETELRRVAEAIVVKDAQSPERLLE 1982 Score = 39.0 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 6/87 (6%) Query: 17 GRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTD 74 R GF V +T V A + + P + +D + + + ++ Sbjct: 1763 LRAAAQGTGFKVLVSTEVEGALDAV-RNTRPAAVAVDLDLPEMAGWVVLDRLKHDASTRA 1821 Query: 75 VFVYYLLMEVDFEKMIAGARAGANSFL 101 + VY + + + GA L Sbjct: 1822 LPVYTVSV---EDHRERSLNLGAIGHL 1845 >gi|188588155|ref|YP_001921219.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|188498436|gb|ACD51572.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] Length = 235 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+V+ + N+ G+ VF+A + E + E + ++D M Sbjct: 1 MKLYNVLIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNET-IHLAIVDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ D V L + + I G GA+ ++ KPFN L + Sbjct: 60 MDGIQMTMKLRSKF-DFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|110833129|ref|YP_691988.1| osmolarity response regulator [Alcanivorax borkumensis SK2] gi|110646240|emb|CAL15716.1| DNA-binding response regulator OmpR [Alcanivorax borkumensis SK2] Length = 236 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + + G+ V + + L + +V+D + G Sbjct: 7 KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQ-MDRALSRELYSLMVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D + I G AGA+ +L KPFN + L +R + + Sbjct: 66 SICRRLREAENIMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRH 124 >gi|24214711|ref|NP_712192.1| response regulator containing a signal receiver domain and a DNA/RNA polymerase-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45657759|ref|YP_001845.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195704|gb|AAN49210.1| response regulator containing a signal receiver domain and a DNA/RNA polymerase-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45600999|gb|AAS70482.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 240 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL + +R + + GF + A + E ++ P+ LV+D + Sbjct: 19 MRTILLTEDEPGIRDTIQIVLESEGFKMIYAMTGKECISLLKES--PDLLVLDVGLPDGS 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++++ + V L + G GA+ +++KPF+ L ++ + + Sbjct: 77 GF-EILKELRKKNSIPVILLTARESELDRVLGLELGADDYMVKPFSPRELVARIKAVLRR 135 Query: 121 QKSKDENQFLD 131 E + + Sbjct: 136 YDGNSEKKQTE 146 >gi|332876950|ref|ZP_08444703.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685058|gb|EGJ57902.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 856 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + +R+ ++ +D + + EA + E E +K LP+ +V D M + Sbjct: 609 ILIVEDNPDMRRFIHYILSD-DYNIIEAENGEEGFEVAKK-YLPDVVVSDVLMPKVDGFD 666 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V L E+ G +GA++++ KPFN LR +R+L + + Sbjct: 667 LCQLLKTNVSTNHIPVILLTAYAMDEQKQVGFESGADAYIAKPFNIRLLRTRVRKLIENR 726 Query: 122 KSKDE 126 K E Sbjct: 727 KKIRE 731 >gi|329896463|ref|ZP_08271541.1| putative two-component response regulatory protein [gamma proteobacterium IMCC3088] gi|328921781|gb|EGG29153.1| putative two-component response regulatory protein [gamma proteobacterium IMCC3088] Length = 226 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+ +++ + ++ GF A S EA + + ++D + Sbjct: 1 MSSIAIIEDDPKIARLLADYLTQAGFDTATAHSGQEALSLATSQH-FDLFLLDVMLPDGD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R L + + +L + E + G G + +++KPF+ + ++ Sbjct: 60 GFSVCKQLR---LFSSAPILFLTARIAEEDRLLGLELGGDDYIVKPFSPREVVARVKANL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200] Length = 231 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LL++ + + G+ V A E E EKE P +++D + Sbjct: 4 TKILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEK-PTLILLDWMLPVYDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +R++ +D+ + L + G + ++ KPF E L +R + + Sbjct: 63 ITVLRRIRKV---SDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILR 119 Query: 120 MQKSKDEN 127 + + Sbjct: 120 RLEREKRQ 127 >gi|172036052|ref|YP_001802553.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC 51142] gi|171697506|gb|ACB50487.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC 51142] Length = 594 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD ++ + G+ V TS A + P+ +++D M + Sbjct: 12 NILIVDDKPSNLRILSTMLVKAGYKVRAVTSGNMALTAAKTMP-PDIILLDIKMPDMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q P T++ V +L D E + G +++KPF + + + Sbjct: 71 EVCEQLQQFPETTEIPVIFLSALQDVEDKVKAFEVGGVDYIIKPFQFQEVLARVSLHLAF 130 Query: 121 QKSKDENQFLDA 132 ++++ + Q L+ Sbjct: 131 RQTRYQLQQLNE 142 >gi|218781447|ref|YP_002432765.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218762831|gb|ACL05297.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 242 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V A EA E + P+ +V+D + + Sbjct: 10 RRILVVEDEAHIADGLKLNLELNGYEVEIAVDGVEALEKY-RFWGPDLIVLDIMLPQIDG 68 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++R + + L + E I G G + +L KPFN + + L Sbjct: 69 LSVLRNIRLND--QHIPILILSAKGAPEDKITGFSYGTDDYLSKPFNLQEFLLRVERLIS 126 Query: 120 M 120 Sbjct: 127 R 127 >gi|116253196|ref|YP_769034.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257844|emb|CAK08942.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 233 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD +R + + GF V A EA+ L + +++D M G +E Sbjct: 14 LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGIE 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +V + L + I G AGA+ +L KPF+ L + + + Sbjct: 73 VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] Length = 227 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ V + + G V + + EF + + +++D + Sbjct: 1 MK-ILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDG-EFLAEVNDYDLIILDLMLPKKN 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G V L E + G AGA+ +L KPF E L +R L Sbjct: 59 GLVVCRELRA--SGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALL 116 Query: 119 QMQKSKD 125 + + Sbjct: 117 RRKSESK 123 >gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila] gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila 130b] Length = 226 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L++D + + GF V + + + + +++D + + F Sbjct: 4 SILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQ-VFDAIILDVMLPKLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + V L D I G GA+ +L KP N L +R + + + Sbjct: 63 -EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQ 121 >gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676] gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185] gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550] gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W] gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W] gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550] gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185] gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676] gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] Length = 247 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 55/130 (42%), Gaps = 7/130 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M ++L+++ +R + + N+ G+ + EA++ E + E + +++D + G Sbjct: 13 MKENILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIE-NSNIDLIILDLMLPGI 71 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + + + L + D + G GA+ ++ KPF+ + ++ Sbjct: 72 SGYDVCREI---NPNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVC 128 Query: 118 PQMQKSKDEN 127 + K D+ Sbjct: 129 LRRIKELDKQ 138 >gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 501 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD ++R + G+ V A + EA E E N ++ D M + Sbjct: 6 TILVVDDEKVIRDGCALILQPEGYQVATAANGQEALEILRTEP-INLVLCDLKMPVMGAL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +V + + + + GA F+ KPF + L ++ + + QK Sbjct: 65 EVLEVAGTHYPEVPIIIITGHGTVANAVECMQKGAYDFVTKPFRVDHLTLVVKRVLEKQK 124 Query: 123 SKDENQFLDA 132 + + + L Sbjct: 125 LERQARELRE 134 >gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 230 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + G V +A EA E E + +++D M + Sbjct: 6 VLVVDDEKEIRDAIEIYLKNEGITVLKAKDGIEALEIL-NENQVHLIILDVMMPKLDGIS 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G + GA+ ++ KPFN L ++ + Sbjct: 65 ATYKIREK-KNIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120 >gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter [Enterococcus faecium D344SRF] gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter [Enterococcus faecium D344SRF] gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] Length = 222 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATH-IELIITDVMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ V + + DFE G + GA+ ++ KP + + + L + Sbjct: 60 GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119 Query: 121 QK 122 K Sbjct: 120 SK 121 >gi|253569328|ref|ZP_04846738.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841347|gb|EES69428.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1324 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + + + + V A + EA + E E N ++ D M + Sbjct: 1081 SVLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHE-YINLVISDIMMPEMDGL 1138 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ + + + L + E I G GA++++ KPF+ E LR + L Sbjct: 1139 ELCEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLLSN 1198 Query: 121 QKSKDENQFLDA 132 ++ +F+++ Sbjct: 1199 RERLRR-RFIES 1209 >gi|225573147|ref|ZP_03781902.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM 10507] gi|225039502|gb|EEG49748.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM 10507] Length = 223 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D +++R + + + + + V EA + EA E + + +++D M Sbjct: 1 MKKILVADDDYLLRDLIKDILEEKNYEVLEAKNGQEAVEIFNQNPEISLVILDVMMPQYD 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R ++V V L D + ++ R+GAN ++ KPF+ E L L Sbjct: 61 GMEVLRRIRLQ---SNVPVLILTALGDTQNELSSLRSGANDYMAKPFHPEVLLARAENLM 117 Query: 119 QMQKSKD 125 +M ++K Sbjct: 118 RMVRNKS 124 >gi|197285086|ref|YP_002150958.1| two-component response regulator of kdp operon [Proteus mirabilis HI4320] gi|227355501|ref|ZP_03839896.1| two-component response regulator of kdp operon [Proteus mirabilis ATCC 29906] gi|194682573|emb|CAR42615.1| two-component response regulator of kdp operon [Proteus mirabilis HI4320] gi|227164297|gb|EEI49186.1| two-component response regulator of kdp operon [Proteus mirabilis ATCC 29906] Length = 227 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + R + GF V++A+ P+ +++D + Sbjct: 5 NILIVEDEKEILRFVRLALENEGFRVYDASECQRGL-IEAASRKPDLVILDLGLPDKDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + L + + AGA+ +L KPF L +R + Sbjct: 64 C-FIQDFRQWSSTPIIVLSARDSEQDKVDALDAGADDYLTKPFGMSELLARVRASLRR 120 >gi|182418450|ref|ZP_02949744.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237666633|ref|ZP_04526618.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377832|gb|EDT75376.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237657832|gb|EEP55387.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] Length = 239 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 4/128 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ +R + + A +A P+ +++D + Sbjct: 1 MNKAQILVVEDDKAIRNLITTTLETKDYKFHIAEDGAKAILEAIS-YKPDVIILDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + ++ ++V + + D I GA+ +L KPF+ + L +R Sbjct: 60 IDGV-EIISKIRTWSNVPIIVVSARSDDSDKIEALDNGADDYLTKPFSVDELLARLRVAL 118 Query: 119 QMQKSKDE 126 + +E Sbjct: 119 RRVNYNNE 126 >gi|148284174|ref|YP_001248264.1| response regulator PleD [Orientia tsutsugamushi str. Boryong] gi|146739613|emb|CAM79396.1| PleD-like response regulator, receivor domain/GGDEF domain [Orientia tsutsugamushi str. Boryong] Length = 489 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD RK+ + V+ A + EA + E + + +++D M G+ F Sbjct: 5 ILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEA-IKIDVVLLDIVMPGMDGFE 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V + D E + G GA+ FL KP +L ++ L +M+ Sbjct: 64 LCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLVRMK 123 Query: 122 KSKDENQF 129 ++ + Sbjct: 124 AVSNQIKL 131 Score = 51.7 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 24/149 (16%) Query: 3 SLLLVDSSHI----VRKVGRHLFND--FGFMVFEATS----VCEAREFCEKELLPNYLVI 52 ++L++D I + ++ F T + E L+P+ L+I Sbjct: 168 TILIIDDDAIWFNRISEIIT-CLTKKVELFECINYTDNKNKLLTDLEKIATSLVPDLLII 226 Query: 53 D--ESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKM----------IAGARAGANSF 100 + +E L A +R L E E + G G N F Sbjct: 227 NNQIILEDPLRVYAILRSKDELKQSAFILLT-EDSLENRDHDDISTDKLLKGLEMGINDF 285 Query: 101 LLKPFNRETLRFAMRELPQMQKSKDENQF 129 + L ++ + ++ +D+ + Sbjct: 286 FPYSIDNNELLARIKTQLRRKQYQDQLKQ 314 >gi|311278811|ref|YP_003941042.1| two component, sigma54 specific, transcriptional regulator, Fis family [Enterobacter cloacae SCF1] gi|308748006|gb|ADO47758.1| two component, sigma54 specific, transcriptional regulator, Fis family [Enterobacter cloacae SCF1] Length = 461 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 4/129 (3%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD VR++ F+ G A++ A E + P+ +++D M Sbjct: 1 MKTRYRILIVDDEDNVRRMLATAFSLQGHETHCASNGRTALEHF-ADTPPDVVLMDIRMP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + + + + E + R+GA +++KPF+ + L ++ Sbjct: 60 EMNGIDTLKVMRAQQPRIPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRA 119 Query: 118 PQMQKSKDE 126 QMQ K E Sbjct: 120 MQMQAMKQE 128 >gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31] gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA] gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31] gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA] Length = 224 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + + F V + EA E+ + + +V+D + Sbjct: 2 RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTY-DLIVLDIMLPKVNGY 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R+ + V L E I G GA+ +L+KPF+ L +R L + Sbjct: 61 EVIKKLRENKN--ETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRR 118 Query: 121 Q 121 + Sbjct: 119 K 119 >gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ ++ G+ + +A EA E E + + +++D M + Sbjct: 4 RILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLE-QKSIDLVILDVMMPNLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ- 121 R + + + + + I G GA+ ++ KPFN + ++ L + Sbjct: 63 EVTKRIR-KNSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRRSN 121 Query: 122 --KSKDENQFLDA 132 ++ ++ ++A Sbjct: 122 YTQASKQDHVIEA 134 >gi|126658801|ref|ZP_01729945.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] gi|126619899|gb|EAZ90624.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] Length = 594 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD ++ + G+ V TS A + P+ +++D M + Sbjct: 12 NILIVDDKPPNLRILSTMLVKAGYKVRAVTSGNMALTAAKTMP-PDIILLDIKMPDIDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 ++Q P ++ V +L D E + AG +++KPF E +R + Sbjct: 71 QVCQELKQFPETAEIPVIFLSALQDVEDKVKAFEAGGVDYIIKPFQFEEVRARVSLHLTF 130 Query: 119 --QMQKSKDENQFLD 131 + + NQ L+ Sbjct: 131 RQTRYQLQQLNQELE 145 >gi|78222505|ref|YP_384252.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193760|gb|ABB31527.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 240 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ + + G+ V S EA E + +++D + G+ F Sbjct: 8 ILLVEDEMHLARGICFNLEMEGYRVSHVESGEEALERLAYD-RFALIILDVMLPGMDGFA 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + V V L D + G ++GA+ +L KPF+ + + + Sbjct: 67 VCERIRTMDSRVPVLILTARSDEGARVTGLQSGADDYLTKPFSLNEFLLRVGGMLRR 123 >gi|307943679|ref|ZP_07659023.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4] gi|307773309|gb|EFO32526.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4] Length = 236 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M S+L+V+ + V G+ A A K +++V+D + Sbjct: 1 MKSILVVEDDRNISDVICFALEKAGYRAVVAPDGLAAVTTF-KGSSFDFIVLDVGLPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R M V + +L + I G G + ++ KPF+ L + + Sbjct: 60 GLEVCRQIRCMSE---VPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVSAIL 116 Query: 119 QMQKS 123 + K Sbjct: 117 RRGKL 121 >gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT] gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + ++ G ++ A + EA + + + +ID M + Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEV-DIAIIDIMMPQID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR++ D+ V L + ++ I G GA+ ++ KPFN + ++ + Sbjct: 60 GY-HLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRR 118 Query: 121 QK 122 Sbjct: 119 YN 120 >gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 261 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +R + G V +A EA +E + +++D M + Sbjct: 8 SVLVVDDEDEIRDAIGIYLKNEGIKVLKAKDGIEAL-MVLEEEEVHLIIMDIMMPRMDGI 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 67 KATFKIRES-KKIPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 123 >gi|312967522|ref|ZP_07781737.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 2362-75] gi|312287719|gb|EFR15624.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli 2362-75] Length = 461 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGALDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDENQFL 130 K E + L Sbjct: 124 SMKKEIRHL 132 >gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 225 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 60/128 (46%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEE-IDLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|254424116|ref|ZP_05037834.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196191605|gb|EDX86569.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 534 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L++D + + + ++ + V T P+ +++D +M + E Sbjct: 34 ILVIDDTPENLHLLSTMLSERQYKVRSVTKGSTGLRGAIAAP-PDLILLDINMPEMNGYE 92 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ V ++ D + G F+ KPF+ + + ++ + Sbjct: 93 VCEQLKAHETTCDIPVIFISALGDVLDKVNAFNVGGVDFITKPFHVDEVLARIQTHLTLH 152 Query: 122 KSKDENQ 128 + + + Q Sbjct: 153 RLQQQQQ 159 >gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + F V T + E K + +++D + GV Sbjct: 1 MSKVLIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKND-FDMIILDIMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRE---AKEIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116 Query: 119 QMQKSKDENQF 129 + NQ Sbjct: 117 NRYQRLVNNQM 127 >gi|149925935|ref|ZP_01914198.1| response regulator [Limnobacter sp. MED105] gi|149825223|gb|EDM84434.1| response regulator [Limnobacter sp. MED105] Length = 1026 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD S + R + H+ +G+ V A S EA E E++ ++ D M G+ Sbjct: 12 RILVVDDSVVERNLFVHMVAKWGYPVEFAASGQEAIELVERD-RFQLVLADWQMPGMQGT 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ+ LG ++ + + D E +I AGA+ L KP + L ++ + Sbjct: 71 ELCVALRQLDLGQYTYIILMSAQNDEEFLIKALDAGADDVLTKPVDGNELEARLQSAVRR 130 Query: 121 QKSKDENQF 129 + + Sbjct: 131 IELQARLAR 139 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 63/142 (44%), Gaps = 11/142 (7%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 S+++VD S ++ + + +G+ V A + EA EK P++++ D M G+ Sbjct: 450 KSIVIVDDSRSFLRIFEAMLHSWGYTVHSAKNGHEALALIEKH-QPDFVLTDWDMPGMSG 508 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR ++ + + ++ R GA+ F+ KP N L+ ++ + Sbjct: 509 IELCEQVRAQKQNAYTYIIMITGYASRDDLLNSLRVGADDFMTKPVNPGELKVRLKTAER 568 Query: 120 M--------QKSKDENQFLDAI 133 + ++ + +Q +A+ Sbjct: 569 IADLHMGLERRHTELSQLYEAL 590 >gi|153813864|ref|ZP_01966532.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756] gi|317502000|ref|ZP_07960184.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331088182|ref|ZP_08337102.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848260|gb|EDK25178.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756] gi|316896680|gb|EFV18767.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330408838|gb|EGG88301.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium 3_1_46FAA] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ +R+ + G++VF+A E E EKE + +ID M + Sbjct: 6 VLIVEDDKEIREGVQIYLQSQGYVVFQAADGIEGLEILEKEE-IHLAIIDIMMPRMDGIR 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ D V L + + I G GA+ ++ KPF L + + + Sbjct: 65 MTMKLREKY-DFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYR 122 >gi|114777962|ref|ZP_01452876.1| Two comoponent transcriptional regulator, winged helix family protein [Mariprofundus ferrooxydans PV-1] gi|114551749|gb|EAU54301.1| Two comoponent transcriptional regulator, winged helix family protein [Mariprofundus ferrooxydans PV-1] Length = 227 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 6/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LL+D + ++ + GF V K+ V+D M G ++ Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARL-KQDQFELAVVDIMMPGKNGMD 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +RQ + V L + I G GA+ ++ KP N L +R + + Sbjct: 62 LLRELRQSSS---LPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRS 118 Query: 122 KSKDE 126 ++ E Sbjct: 119 DTQQE 123 >gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241] gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|332289758|ref|YP_004420610.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis UMN179] gi|330432654|gb|AEC17713.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis UMN179] Length = 239 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + F V + +A +L + +++D M G Sbjct: 1 MPKILLVDDDVEFTSLLAEVLAMESFEVEVVHNGEDALHTL--DLSYDLILLDIMMPKLG 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ V L D I G GA+ +L KPFN L ++ + Sbjct: 59 GIETLKQIRQKYT---TPVLMLTARGDDVDRILGLELGADDYLSKPFNDRELVARIKAIL 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|330995456|ref|ZP_08319361.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329575524|gb|EGG57062.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 919 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LL+V+ + R H + F V EA E E +E P+ ++ D M Sbjct: 662 KKLLVVEDNADFRAYLVHELS-ADFDVVEAGDGVEGEEMVREEW-PDLVISDLMMPRCDG 719 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + F ++ + + L ++ + I +AGA+S++ KPFN E L+ +R+L + Sbjct: 720 IAFCQRMKNDIHTSHIPFILLTAKMSDDARIESYKAGADSYISKPFNFELLQVRVRKLIE 779 Query: 120 MQKSKDE 126 ++++ E Sbjct: 780 QREARKE 786 >gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E N +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-NLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|294054186|ref|YP_003547844.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613519|gb|ADE53674.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 380 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G A + EA +E P +++D M GV Sbjct: 17 RILIVDDETKNLQLVGEILRRVGMPFIFAINGEEALT-VSREQQPALILLDIMMPGVDGL 75 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + V +L + +++G AG ++ KPF +E L +R Q+ Sbjct: 76 TVCKQLKEDPQTAHIPVIFLTAATELTDVVSGFAAGGVDYIKKPFIKEELLARVRTHLQL 135 Query: 121 QKSKDENQFL 130 ++ E L Sbjct: 136 HYTQQELSAL 145 >gi|289674468|ref|ZP_06495358.1| osmolarity response regulator [Pseudomonas syringae pv. syringae FF5] Length = 145 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ +V + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R V + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130 Query: 123 S 123 + Sbjct: 131 A 131 >gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 268 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 Query: 121 QK 122 + Sbjct: 158 PR 159 >gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] Length = 223 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ ++ + + G V A EA E + +++D + Sbjct: 1 MSKILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKY-SEQTFDLVLLDIMLPKID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ ++V + L + E I G A+ ++ KPF+ L + + Sbjct: 60 GYGVCEVIRQK---SNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVL 116 Query: 119 QMQKSKD 125 + +D Sbjct: 117 RRSSRQD 123 >gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + ++ G+MV A A ++ P+ +++D M G+ F Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQR-RRPDLILLDAMMPGMDGFE 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q P +++ V ++ D E ++ G AGA +++KP + + + Sbjct: 72 TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131 Query: 122 KSKDENQ 128 ++ + Sbjct: 132 RTLQSAR 138 >gi|254414545|ref|ZP_05028311.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178775|gb|EDX73773.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 413 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD ++ + G+ V A S A EK LP +++D M + Sbjct: 10 VLIVDDQPNNLRLLSTTLTEAGYRVRNAISAKMALMGIEKA-LPQLILLDIMMPQMDGYE 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H++ + + +L + + G ++ KPF + + + + Sbjct: 69 LCQHLKSDERTQHIPIIFLSALDNEWDKVKAFEVGGTDYITKPFQVKEVLSRVNNQLMVV 128 Query: 122 KSKDE 126 + + + Sbjct: 129 RQQQQ 133 >gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1] gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1] gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEE-VVDLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKITKQL 126 >gi|160935922|ref|ZP_02083296.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC BAA-613] gi|158441164|gb|EDP18881.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC BAA-613] Length = 231 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + GF V +A EA E+ +K + + L++D M G+ Sbjct: 1 MQTILVCDDDKQIVEAIDIYLTGEGFKVIKAYDGYEALEYLDKNEV-DLLIVDVMMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRTTLKVRE-NSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQMRR 118 >gi|152995590|ref|YP_001340425.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150836514|gb|ABR70490.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + + + + + V A + + +++D M + Sbjct: 1 MPHILIIDDDVELSDLLKEVLSFENCAVSAAYDGEAGLAAM--DDSVDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++Q+ DV V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GF-ETLKQLREKWDVPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILRR 117 Query: 121 QKSKDENQF 129 ++ Q Sbjct: 118 TQAGKGQQQ 126 >gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis H37Rv] gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 02_1987] gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 94_M4241A] gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T92] gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis 210] gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN R506] gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN V2475] gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium tuberculosis H37Rv] gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis W-148] gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] Length = 253 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G V A + + +V+D + G+ F Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L IAG GA+ +L KPFN + L +R L + Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|332798879|ref|YP_004460378.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332696614|gb|AEE91071.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 224 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + F + + V AT EA + + E P+ +++D +M + Sbjct: 3 TKILIVDDEADIVAMLKGFFENRNYDVLTATDGIEAIK--QSERQPDIILLDINMPQLDG 60 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + +L ++ + G G + ++LKPF+ L + + Sbjct: 61 LSVCRRIR---DYVSCPILFLTARIEDADKVKGFSVGGDDYILKPFSIIELEARVAAHLR 117 Query: 120 MQKSK 124 +K + Sbjct: 118 REKRR 122 >gi|327404314|ref|YP_004345152.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319822|gb|AEA44314.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 230 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 4/132 (3%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +LLV+ + V G+ V ++ E E + + D M Sbjct: 1 MKSKAKILLVEDDTNLGFVISDQLKSEGYQVVLCSNGMEGHMRF-SEDEFHLCIFDVMMP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F + +V + +L + E +AG AG + +L KPF+ + L ++ L Sbjct: 60 KKDGFTLAKEIRTMNQEVPIIFLTAKAMTEDKVAGFNAGGDDYLTKPFSFDELSVRVKAL 119 Query: 118 PQMQKSKDENQF 129 + +DE + Sbjct: 120 LKRVNIQDEPEQ 131 >gi|312131429|ref|YP_003998769.1| transcriptional regulator, crp/fnr family [Leadbetterella byssophila DSM 17132] gi|311907975|gb|ADQ18416.1| transcriptional regulator, Crp/Fnr family [Leadbetterella byssophila DSM 17132] Length = 345 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ + +R+ + GF V A + E + +E +P+ +V D M + + Sbjct: 2 RILLIEDNQEIRENICEILELDGFDVITAANGKEGLDLA-RESVPDLIVCDIMMPVMDGY 60 Query: 63 IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + P D+ +L + + G GA+ ++ KPF L A+R + Sbjct: 61 TVLYFLSKEPKTADIPFIFLTAKAERLDFRKGMEMGADDYITKPFEDVELINAIRSRLKK 120 Query: 121 QKSKDEN 127 ++ + Sbjct: 121 KELVRKE 127 >gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A + EA + +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR++ +++ + L + D I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-QVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRR 118 Query: 121 QK 122 + Sbjct: 119 SE 120 >gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes (paired with YvrG) [Bacillus subtilis subsp. spizizenii str. W23] Length = 248 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + + + G+ + +A S EA + + + +V+D M G+ Sbjct: 16 SILIVDDEKAIVDMIKRVLEKEGYRNLLDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 74 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ +D +++L ++G GA+ ++ KPFN L +R + Sbjct: 75 FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 131 Query: 120 MQKSKDE 126 E Sbjct: 132 RTYQSKE 138 >gi|218129290|ref|ZP_03458094.1| hypothetical protein BACEGG_00867 [Bacteroides eggerthii DSM 20697] gi|217988467|gb|EEC54788.1| hypothetical protein BACEGG_00867 [Bacteroides eggerthii DSM 20697] Length = 1487 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 5/123 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 LLV+ + +R R +F+ + + EA E + K LLP+ ++ D M Sbjct: 1219 LLVEDNAELRIFLRSIFSPE-YRIVEAADGMEGCDKALK-LLPDIIISDVMMPEKDGIAM 1276 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ ++ L Q Q Sbjct: 1277 TRELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLVQRQ 1336 Query: 122 KSK 124 K + Sbjct: 1337 KLQ 1339 >gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756] gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756] gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium 3_1_46FAA] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + G+ + +A EA E E+E + + L++D M + Sbjct: 1 MYNILVCDDDKEIVEAIEIYLTQEGYRILKAYDGTEALEMLEREEV-HLLLLDVMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPF+ L ++ + Sbjct: 60 GIRATLKIREKNS-IPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLRR 118 >gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 223 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + +D F V A + + F + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGL-FLASQNIYDAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTKQTI 127 >gi|29348306|ref|NP_811809.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340210|gb|AAO78003.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1326 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + + + + V A + EA + E E N ++ D M + Sbjct: 1081 SVLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHE-YINLVISDIMMPEMDGL 1138 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ + + + L + E I G GA++++ KPF+ E LR + L Sbjct: 1139 ELCEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLLSN 1198 Query: 121 QKSKDENQFLDA 132 ++ +F+++ Sbjct: 1199 RERLRR-RFIES 1209 >gi|23010703|ref|ZP_00051302.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 240 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + V A E + + + +V+D + G Sbjct: 10 ILVVEDDREISALVARYLRANDCRVSLAGDGRE-MDRVLADARVDLIVLDLMLPGEDGLS 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R G+ V + L + + I G GA+ +L KPFN L +R + + + Sbjct: 69 LCRRLRA---GSQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRK 125 Query: 122 KSKDEN 127 S+ ++ Sbjct: 126 GSEPQD 131 >gi|330808999|ref|YP_004353461.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377107|gb|AEA68457.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1239 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD S + L D + V AT +A ++ + +V D M Sbjct: 837 KVLVVDDSPEMLGYLSELLRD-DYSVATATDGEQAWALLQRRP-IDVVVSDVMMPKLDGF 894 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ P + V + E ++G +GA+ ++ KPF+ L+ +R + +M Sbjct: 895 GLTARIKGSPGFAHLPVILVTARGGSEACVSGLESGADDYIAKPFSPLELKARVRAVLRM 954 Query: 121 QKSKDEN 127 + + E Sbjct: 955 SQVQTEL 961 >gi|317475260|ref|ZP_07934526.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908514|gb|EFV30202.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1487 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 5/123 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 LLV+ + +R R +F+ + + EA E + K LLP+ ++ D M Sbjct: 1219 LLVEDNAELRIFLRSIFSPE-YRIVEAADGMEGCDKALK-LLPDIIISDVMMPEKDGIAM 1276 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ ++ L Q Q Sbjct: 1277 TRELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLVQRQ 1336 Query: 122 KSK 124 K + Sbjct: 1337 KLQ 1339 >gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1157 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + V A E+ E+ + +++D M + Sbjct: 1037 KKILIVDDDMRNIFALSSALQTYDMQVEIANDGEESLTKLEETAGIDMVLMDIMMPKMDG 1096 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + H+R+ + + L + E AGAN ++ KP + + L M+ + Sbjct: 1097 YDAMRHIRKQQKWAKLPIIALTAKAMKEDRDKCIEAGANDYITKPVDVDRLLALMQIWLE 1156 Query: 120 M 120 Sbjct: 1157 Q 1157 Score = 86.4 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 5/109 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +++V+ + + + G+ +A E + P+ +++D + G Sbjct: 765 VVIVEDDKNFAAILQDYAKEHGYQSILVHDGDQAVETV-QNNHPDAVILDIMLPGKDGWQ 823 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + ++ P + V+ + + + GA SFL KP N E L Sbjct: 824 ILKELKNDPETAGIPVHLMSAGDAAVNRVR--KEGAISFLKKPINTEVL 870 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + R L G V +A A E +++D ++ Sbjct: 886 KQILLIEDHKMQSHALRELMEKQGITVDQAFDGESAFRML-TESEYQCVILDINLPDISG 944 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 L+ + ++++ ++ V + ++ AN+ ++K Sbjct: 945 LDLLDKIKEVERFAELPVIVNTAMELDKTSVSRLMQYANAMVVK 988 >gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + GF V A A P+ +++D + G+ Sbjct: 5 TILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARA-CRPDLVILDVMLPGLDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V+V L D + G GA+ +L KPF+ L ++ + + + Sbjct: 64 EVCRRLHQETA-VYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRRTR 122 Query: 123 S 123 + Sbjct: 123 A 123 >gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 226 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + +D ++V A EA E + + +++D + + Sbjct: 1 MK-ILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDV-FEYDLILLDVMLPKID 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + + + G AGA+ +L+KPF + L +R L + Sbjct: 59 GISLCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRR 118 >gi|307592392|ref|YP_003899983.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986037|gb|ADN17917.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 395 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 48/126 (38%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L++D ++ + + G+ V A + A K +P+ +++D M + F Sbjct: 8 ILIIDDEVENLRLLALILGEAGYQVRSAINGRAALG-VIKNQIPDLILLDVKMPVMDGFE 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ + +L + G ++ KP++ + + + Sbjct: 67 LCQTLKAASDWCDIPIVFLSAAEGVSDKVKAFELGGVDYITKPYHAAEVIARVHIHLSLH 126 Query: 122 KSKDEN 127 + K+E Sbjct: 127 QLKEEL 132 >gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +RK N GF V EA S EA + + P +V+D + G+ F Sbjct: 6 KVLVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITR-TQPKVVVLDLMLPGIDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + L + I G GA+ +++KPFN L +R + Sbjct: 65 EVCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRKID 124 Query: 123 SKD 125 + Sbjct: 125 NAK 127 >gi|94495598|ref|ZP_01302178.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] gi|94424986|gb|EAT10007.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] Length = 240 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLLVD +R+ + GF V S EAR + +++D M G Sbjct: 8 LLLVDDERSIREPLAQYLSRNGFRVTAVDSAAEARVRLNAN-AIDLVILDIMMPGEDGLS 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H+R+ +++ V L + + I G GA+ ++LKPF+ L ++ + + Sbjct: 67 LCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 122 >gi|16329450|ref|NP_440178.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] gi|1651932|dbj|BAA16858.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] Length = 840 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++ +D S + K+ + G+ VF A A ++ P+ +V+D M G+ F Sbjct: 8 TVFAIDDSPLNLKILQRFLEKQGWKVFIAEDGLTAITEI-NQVQPDIIVLDIMMPGIDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P ++ + +L D + ++ G GA ++ KPF +E + ++ ++ Sbjct: 67 EVCRRLKAAPATAEIPIIFLSALTDQKSIVKGLELGAVDYIHKPFQQEEIITRLQLQLKL 126 Query: 121 QK----SKDENQFLDA 132 + +NQ L+ Sbjct: 127 HQTNQALLQKNQQLEE 142 >gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|323698577|ref|ZP_08110489.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio sp. ND132] gi|323458509|gb|EGB14374.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio desulfuricans ND132] Length = 346 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 3/130 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + D + V A + EA E P+ +++D + + Sbjct: 7 QTVLVVDDIPTNLDLLVETLKDE-YRVLAALNGREALEIVHSATPPDIVLLDVMLPHMDG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ ++ V ++ E G AG ++ KP + + +R Sbjct: 66 YTVCREIKADLRSRNIPVIFVTARDQEEDQTRGFEAGGVDYIAKPISPAVVLARVRTHLA 125 Query: 120 MQKSKDENQF 129 + + Sbjct: 126 LHNQNLALER 135 >gi|317490823|ref|ZP_07949259.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920370|gb|EFV41693.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 233 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++ LV+ + + GF V E E P+ +++D + + F Sbjct: 4 TIWLVEDESSIADTLIYTLESEGFTVCWFERGLPVLEMM-TEKKPDLVILDVGLPDINGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + D+ V +L D + G GA+ ++ KPF+ + +R + + Sbjct: 63 ELCRKILTQSPDLPVLFLTARNDEVDRLIGLEIGADDYVAKPFSPREVCARVRTILRR-- 120 Query: 123 SKDENQFLD 131 S +N+ L+ Sbjct: 121 SLKQNRLLN 129 >gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family) [Cylindrospermopsis raciborskii CS-505] gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family) [Cylindrospermopsis raciborskii CS-505] Length = 268 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLVD + + G++V + E + + L++D + Sbjct: 33 MK-ILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTY-DLLILDWMLPEKT 90 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ G ++ V +L + + + G AG + +L+KPF L +R L Sbjct: 91 GLEICQELRRQ--GKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALL 148 Query: 119 QM 120 + Sbjct: 149 RR 150 >gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 237 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L V+ ++R+ + GF V E E + P+ ++D + G+ Sbjct: 4 THVLFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRAD-RPDIALLDVMVPGLDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 63 VSLCRRIR---DESTVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|258406510|ref|YP_003199252.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] gi|257798737|gb|ACV69674.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] Length = 458 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + R + + G+ V EA + +A L P +V+D M G+ Sbjct: 11 RVLVVDDEEALRLMLRAVLEEQGWEVDEAANGEKALHRVTA-LEPQVIVLDIRMPGISGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V L + + + GA FL KP + E + + + + Sbjct: 70 EVLGRLQADYRHIPVIMLTAYGTVDTAVEAMKLGAFDFLAKPADNEEIISVLDRALEYSR 129 Query: 123 SKDEN 127 Sbjct: 130 YLRRE 134 >gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 304 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + GF T EA E+E P+ +++D + G+ Sbjct: 79 MKAKILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFERE-QPDLILLDLMLPGM 137 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109 +R+ V + L + D ++ G +GA+ ++ KPF + Sbjct: 138 NGIDICKTIRRSSP---VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKE 186 >gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] Length = 1339 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + G V A + E + + +++D M + Sbjct: 1220 TVLVVDDDARNLFALSGVLELHGVRVLHAEDGRKGIEALTRHAGVDLILMDVMMPELDGY 1279 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R+MP + + + + +GA+ ++ KP + + L +R Sbjct: 1280 AATAEIRRMPEYAALPIIAVTAKAMPGDREKSLASGASDYVTKPVDADDLIARVRHWLTR 1339 >gi|170724123|ref|YP_001751811.1| osmolarity response regulator [Pseudomonas putida W619] gi|169762126|gb|ACA75442.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 246 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + F G+ + + + + + N +V+D + G Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQ-MDRLLQREVFNLVVLDLMLPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + + L + D I G GA+ +L KPFN + L ++ + + Q Sbjct: 71 SACKRLRQSNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129 >gi|94264442|ref|ZP_01288231.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455132|gb|EAT05354.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 833 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D ++RK+ +G+ A A E ++ P +ID M G+ Sbjct: 1 MK-ILVADDDPVIRKMLTTQLKGWGYQPLTAADGQAAWEIMQQPDAPPLALIDWMMPGLD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ P + ++ L + +I G AGA++++ KP N L +R Sbjct: 60 GLTLCRRIREQPGPSAPYLIMLTTKSTPADVINGLEAGADAYITKPHNAAELHARIRVGL 119 Query: 119 QMQKSK 124 + + + Sbjct: 120 RSIEHR 125 Score = 85.6 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFG---FMVFEATSVCEAREFCEKELL-PNYLVIDESM 56 M +LL++ + RH + F + A S+ A E + P+ +++D ++ Sbjct: 146 MPLVLLIEDDPGETLLIRHQLTERNVDAFALHSADSLAAATRLLTGEGVVPDVVILDLNL 205 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + I V + D + L + E AGA+ FL K + TLR A+R Sbjct: 206 PDSVG-IRTVERCRSLCDSPIVVLSGNDEPEDRRLALEAGADDFLAKGGDGPTLRRALRY 264 Query: 117 LPQMQKSKDENQFLDAI 133 + + + A+ Sbjct: 265 AIIRHRRDSDMRLAAAV 281 >gi|308273138|emb|CBX29741.1| Acetoacetate metabolism regulatory protein atoC [uncultured Desulfobacterium sp.] Length = 450 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + + + L D GF V A++ E + ++E P+ +++D M G+ Sbjct: 4 SILIVDDNPSIIQSLKGLLTDEGFEVITASNGYEGLKLIDEES-PDLVLLDIWMPGIDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V + + E + + GA + KP + + + + ++ Sbjct: 63 ETLKQIKKDNPYIQVIIITGHGNIETAVNAIKLGAYDLIGKPLSIDKIIVTINNALNFRR 122 Query: 123 SKDENQFL 130 ++EN++L Sbjct: 123 LEEENRYL 130 >gi|266619511|ref|ZP_06112446.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288868919|gb|EFD01218.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 237 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ +R+ G+ VF+A E + ++E + ++D M + Sbjct: 6 ILLVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLKILDQEE-IHLAIVDVMMPRMDGIT 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+ D V L + + I G GA+ ++ KPF L + + + Sbjct: 65 MTVKLREKY-DFPVIILSAKTEEVDKIMGLNIGADDYISKPFTPMELLARVNSQLRRYR 122 >gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 226 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD+ VR V + L + GF V E+ EA + + + +D + G Sbjct: 1 MKNIKILIVDNDRNVRDVIKLLLVNEGFTVDESGDGNEALDIFSIHNY-SLISLDVMLPG 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R+ +++ + L + + G G + ++ KPF+ + + ++ Sbjct: 60 LDGWTVCKKIRER---SNIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKA 116 Query: 117 LPQM 120 + + Sbjct: 117 VLKR 120 >gi|224540392|ref|ZP_03680931.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM 14838] gi|224517994|gb|EEF87099.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM 14838] Length = 1421 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R R + D+ + V EA + EA E ++ +++V D M + Sbjct: 1167 NILVVEDNADMRGYIRSILRDY-YNVLEACNGAEAIEILNRQS-IDFIVSDLMMPVMDGI 1224 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V++ + + L + E + R G + +LLKPF+ L + + + Sbjct: 1225 ELSRRVKETFANSHIPFLMLTAKTSPEARLESYRTGVDEYLLKPFDETLLLTRIENILEN 1284 Query: 121 QKSKDEN 127 ++ Sbjct: 1285 RRRYQRQ 1291 >gi|254429359|ref|ZP_05043066.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195528|gb|EDX90487.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 236 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + + G+ V + + L + +V+D + G Sbjct: 7 KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQ-MDRALSRELYSLMVLDLMLPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D + I G AGA+ +L KPFN + L +R + + Sbjct: 66 SICRRLREAENVMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRH 124 >gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] Length = 888 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + KV R L GF V A+ +A + +P+ +++D M G+ Sbjct: 770 RILVVDDNAVNLKVTRALLRKSGFQVDIASRGEDAIDSIRAS-VPDLVLMDIQMPGMDGL 828 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ P + + L V E A AG N +L KP + L + Sbjct: 829 ATTRLLRQDPDFRHLVIIGLTANVSKEDRQACLDAGMNDYLTKPISLLKLSECLSRWL 886 >gi|297157290|gb|ADI07002.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 246 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + GF V A A + + P+ LV+D + G Sbjct: 20 RRILVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAQA-WQPDLLVLDVMLPGFDG 78 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE V+ V V L D M+ G GA+ ++ KPF+ L + L + Sbjct: 79 LEVCRRVQA---TRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLR 135 Query: 120 MQKSKD 125 + Sbjct: 136 RVERAA 141 >gi|281424136|ref|ZP_06255049.1| sensor histidine kinase/response regulator [Prevotella oris F0302] gi|281401793|gb|EFB32624.1| sensor histidine kinase/response regulator [Prevotella oris F0302] Length = 634 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 4/118 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD S + + + F V A EA E E P+ ++ D M + Sbjct: 389 LLIVDDSEDFLEFMAEVLSHK-FHVRVAHDGKEALMRVE-EHRPDVILSDVMMPEMDGNA 446 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ D+ L V + GA+ ++ KPF+ + L + L + Sbjct: 447 LCRALKENRNTCDIPFIMLTARVAEAHRMESLELGADDYITKPFSMDLLDLRISNLIK 504 >gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator KdpE [Pediococcus acidilactici 7_4] gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator KdpE [Pediococcus acidilactici 7_4] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + + G+ + E E + +++D + Sbjct: 1 MSKILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSED-FDAILLDLMLPEIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R+ + + + ++G GA+ +++KPF E L +R + Sbjct: 60 GIEVCRRIRREKI---TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116 Query: 119 QMQKSKDEN 127 + ++++ Sbjct: 117 RQVDLEEQD 125 >gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 231 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 240 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 8/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A A + +L P+ +++D + + Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAA-SQLRPDLVIMDIMLPVMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + V V L D + G AGA+ ++ KPF+ L + L + Sbjct: 72 LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130 Query: 122 KSKD------ENQFL 130 + EN+ L Sbjct: 131 ERAKVIAKNSENEKL 145 >gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 859 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 8/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +R + + G + AT+ EA E PN +V D M + F Sbjct: 474 RVLVVEDNPDMRSYLADILS-AGHEIVLATNGREALESIAA-KRPNVIVSDVMMPEMDGF 531 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P D+ V L + + G GA+ ++ KPF+ LR +R ++ Sbjct: 532 ELVRRLKGDPALRDIPVLLLTARASGAEAVGGLDVGADEYMSKPFDPLELRARVRAAERL 591 Query: 121 QKS----KDENQFLDA 132 ++ +N L A Sbjct: 592 HRAYLELAAKNDELAA 607 >gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 220 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ ++ + R GF V A + + +++D + L Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPY-DLVLLDLGLPKRDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R G + V + + G AGA+ +L+KPF+ + L MR L + Sbjct: 61 DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 Query: 121 QKSKD 125 Q + Sbjct: 119 QSGRS 123 >gi|75906349|ref|YP_320645.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700074|gb|ABA19750.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 470 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + ++ + GF V +A + A C+ LLP+ +++D +M + Sbjct: 12 NILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQM-LLPDVILLDVNMPEMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +D+ V ++ D + G ++ KPF+ + + Sbjct: 71 QVCQQLKDDEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQI 128 >gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIETEKK 127 >gi|298387534|ref|ZP_06997086.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298259741|gb|EFI02613.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1346 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 4/119 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA E P ++ D M + Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIP-EYKPELVISDIMMPEMRG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1127 DELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLL 1185 >gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 334 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +++V+ + + R + G+ V + L P+ +++D + G+ Sbjct: 112 VVVVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRT-LRPSLVLLDVGLPGIDGLE 170 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V ++ D + G + GA+ ++ KPF+ L + + + Sbjct: 171 VCRRLRAADDWTPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRR 227 >gi|292487639|ref|YP_003530512.1| transcriptional regulatory protein kdpE [Erwinia amylovora CFBP1430] gi|292898875|ref|YP_003538244.1| kdp operon transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291198723|emb|CBJ45832.1| kdp operon transcriptional regulator (two-component response regulator) [Erwinia amylovora ATCC 49946] gi|291553059|emb|CBA20104.1| Transcriptional regulatory protein kdpE [Erwinia amylovora CFBP1430] Length = 226 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R F V +A ++ P +++D + Sbjct: 1 MTTILIVEDEKEIRRFLRVALEGEDFRVVDAETLKRGL-IEAATRKPQLVILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + + V L D I AGA+ FL KPF L +R + Sbjct: 60 G-CQFIHEIRQWSTMPVIVLSARSDESDKITALDAGADDFLTKPFGVGELLARVRVALRH 118 Query: 121 QKSKDEN 127 + EN Sbjct: 119 RPQSSEN 125 >gi|253571881|ref|ZP_04849286.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251838478|gb|EES66564.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1346 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 4/119 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA E P ++ D M + Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIP-EYKPELVISDIMMPEMRG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1127 DELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLL 1185 >gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293] gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + E + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|209522750|ref|ZP_03271308.1| response regulator receiver modulated diguanylate cyclase [Arthrospira maxima CS-328] gi|209496799|gb|EDZ97096.1| response regulator receiver modulated diguanylate cyclase [Arthrospira maxima CS-328] Length = 259 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+VD V D + + A S +A + P+ +++D M + Sbjct: 1 MFSILIVDDDPDNFDVVETCLIDENYHLHYAYSGQDALSVINV-IKPDLILLDVMMPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ M + + E + AGA+ F+ KP N L +R + Sbjct: 60 GIEVCRRIKAMGEWKGTPIIMVTALSSTESLAECLGAGADDFIAKPVNGLELLARIRSML 119 Query: 119 QMQKSKD 125 ++++ Sbjct: 120 RIKQQYQ 126 >gi|160895063|ref|ZP_02075837.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50] gi|156863494|gb|EDO56925.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50] Length = 239 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + F+ G+ V+ AT+ A + EK+ P+ +++D +M + Sbjct: 18 QSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEKK--PDIILLDVNMPDIDG 75 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R + +L ++ I G GA+ +++KPF+ + L + + + Sbjct: 76 FTVCERIRD-YVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRRE 134 Query: 122 K 122 K Sbjct: 135 K 135 >gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174] gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + ++V + + EA E C ++ + ++D + + F Sbjct: 4 KILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALE-CIQKTEIDLAILDVMLPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V L ++D I G GA+ ++ KPFN + ++ + Sbjct: 63 RICQKIRENYYF---PVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQLRR 119 Query: 121 QK 122 + Sbjct: 120 YQ 121 >gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 227 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + + ++ + GF V + EA +E P+ +++D + + Sbjct: 3 KKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREEN-PDLIILDLMLPEISG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L + + G GA+ ++ KPF + L + + Sbjct: 62 WDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLR 118 Query: 120 MQK 122 + Sbjct: 119 RSE 121 >gi|29347144|ref|NP_810647.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29339043|gb|AAO76841.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1346 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 4/119 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA E P ++ D M + Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIP-EYKPELVISDIMMPEMRG 1126 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1127 DELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLL 1185 >gi|50085995|ref|YP_047505.1| regulator of kdp operon (transcriptional effector) [Acinetobacter sp. ADP1] gi|49531971|emb|CAG69683.1| regulator of kdp operon (transcriptional effector) [Acinetobacter sp. ADP1] Length = 237 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L++D +RK G+ V A + + E + + L++D + + Sbjct: 10 SILIIDDEPQIRKFLDIALRAQGYAVHVAETGMKGLEILASQGA-DLLILDLGLPDMDG- 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +++M + + V L D ++ I AGAN ++ KPF+ + L +R + + Q Sbjct: 68 AEVLKEMRQWSQIPVIVLSARPDEQQKIKLLDAGANDYVTKPFSIQELCARIRVMFRQQP 127 Query: 123 SKDE 126 S+ E Sbjct: 128 SQSE 131 >gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + ++V A ++ E + L++D + G+ Sbjct: 1 MK-VLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEA-TAFDLLILDLGLPGMD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ G + + L + G AGA+ +++KPF+ L +R L Sbjct: 59 GLSFCQTIRQR--GHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRK 119 >gi|332829570|gb|EGK02216.1| hypothetical protein HMPREF9455_01486 [Dysgonomonas gadei ATCC BAA-286] Length = 1300 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 60/135 (44%), Gaps = 6/135 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ +R++ + + + + + + EA EA E+ +P+ ++ D M + Sbjct: 1048 SILIVEDEKNIRELLKDILSPY-YNISEAGDGEEAVSMIEQN-MPDIILSDVLMPNMDGM 1105 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++ P + + + + E I + GA+ ++ KPF+ + ++ L Sbjct: 1106 GLIDKLKSDPKTAHIPIINVSAKSSVEDHINAYQHGADLYITKPFHPRHVLTTVQNLVNK 1165 Query: 121 QKSKDE--NQFLDAI 133 + + N L +I Sbjct: 1166 RSVLKDFFNSSLSSI 1180 >gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + + N+ G+ V + +A E+ K + ++D M + Sbjct: 3 TKILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYM-KNNRVDLALLDVMMPEISG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V L +V+ I G GA+ ++ KPFN L ++ + Sbjct: 62 FEICRIIREKYMF---PVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLR 118 Query: 120 MQKSKDENQ 128 K + +Q Sbjct: 119 RYKKYNPSQ 127 >gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 259 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 48/128 (37%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + + + + + + E + +++D + + Sbjct: 22 MAKILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNEN-FDAILLDLMLPDLN 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + + ++G GA+ +++KPF E L +R + + Sbjct: 81 GL-EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 139 Query: 121 QKSKDENQ 128 K + E Q Sbjct: 140 VKIEKEAQ 147 >gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24] Length = 1792 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1671 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1730 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M++ + Sbjct: 1731 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1790 >gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1800 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1679 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1738 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1739 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1798 >gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F + S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|192361562|ref|YP_001984105.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] gi|190687727|gb|ACE85405.1| hipothetical sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] Length = 688 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 9/136 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + D G + ATS A E + LP+ +++D M + F Sbjct: 80 RILLVDDTPENLDILSAILEDLGCQLLVATSGERALELATR-RLPDLVLLDVMMPDMNGF 138 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ T++ + ++ E + G + G ++ KP N + +R ++ + Sbjct: 139 EVCTRLKADLATTEIPIVFVTART--EDISQGFQVGGADYITKPINADEVRARVKYQLER 196 Query: 121 QKSKDE----NQFLDA 132 Q E N+ L+A Sbjct: 197 QGMLAELKSFNRELEA 212 >gi|168184125|ref|ZP_02618789.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794198|ref|YP_002861750.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672851|gb|EDT84812.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261611|gb|ACQ52644.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 223 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +RK+ + N G+ EA A + KE + ++ D M + Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDILYKE-YIDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + + + F G R G + +++KP + + + L + Sbjct: 60 GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119 Query: 121 QKSKDENQ 128 + +E + Sbjct: 120 SQIINERR 127 >gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 231 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + G+ V +A + +A + E+E + +++D M + Sbjct: 5 NILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEK-IHLVLMDVMMPELDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A V+ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 SATVKIREEL-NIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLRR 120 >gi|299139599|ref|ZP_07032773.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598527|gb|EFI54691.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 251 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 6/118 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + + R F G+ V A E + P+ +V D +M + Sbjct: 13 KKILVIDDEPSITRALRASFLANGYDVRTAHDGIAGLHVLE-DWGPDLVVTDLAMPDMDG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 VR + + L + D E I AGA+ ++ KPF+ + L +R Sbjct: 72 IEICRQVRSKSS---IPIILLSVRDDTESKIRALDAGADDYVTKPFSIDELLARVRTA 126 >gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 230 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 1/127 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + + G+ R+ + + L++D ++ G+ Sbjct: 1 MKKILIIEDDRRIAQNISRTLQEDGYATEVVYEGINGRQMAL-QPGVDLLILDINLPGIN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + L + E + G GA+ +L+KPF+ L + + Sbjct: 60 GFEVCRSVRAEKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRR 119 Query: 121 QKSKDEN 127 +E Sbjct: 120 STLLEEM 126 >gi|228473133|ref|ZP_04057890.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC 33624] gi|228275715|gb|EEK14492.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC 33624] Length = 241 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + GF V A + E + K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPY-DMCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F V + +L E +I G ++GA+ +L KPF+ E L +R + Q + Sbjct: 65 FTLAKEIREKNEKVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQRK 124 >gi|189183991|ref|YP_001937776.1| response regulator PleD [Orientia tsutsugamushi str. Ikeda] gi|189180762|dbj|BAG40542.1| putative response regulator protein [Orientia tsutsugamushi str. Ikeda] Length = 489 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD RK+ + V+ A + EA + E + + +++D M G+ F Sbjct: 5 ILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEA-IKIDVVLLDIVMPGMDGFE 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V + D E + G GA+ FL KP +L ++ L +M+ Sbjct: 64 LCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLVRMK 123 Score = 46.3 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 13/104 (12%) Query: 38 REFCEKELLPNYLVID--ESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKM------ 89 E L+P+ L+I+ +E L A +R L E E Sbjct: 212 LEKIATSLVPDLLIINNQIILEDPLRVYAILRSKDELKQSAFMLLT-EDSLENRDYDDIS 270 Query: 90 ----IAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129 + G G N F + L ++ + ++ +D+ + Sbjct: 271 TDKLLKGLEMGINDFFPYSIDNNELLARIKTQLRRKQYQDQLKQ 314 >gi|73670561|ref|YP_306576.1| response regulator receiver [Methanosarcina barkeri str. Fusaro] gi|72397723|gb|AAZ71996.1| response regulator receiver [Methanosarcina barkeri str. Fusaro] Length = 285 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD ++ + + + A+S EA + ++E L + +++D M G Sbjct: 9 KVLIVDDVLENIELIEAYLSVEPYNLITASSGKEAIQKLKEEKL-DMILLDVMMPEVGGY 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E V+ P + V L + E I G AGA+ FL KP NR L+ ++ L ++ Sbjct: 68 EVCRIVKNNPETQFIPVLMLTALSEIEDRITGIEAGADDFLTKPINRLELKTRVKSLLRI 127 Query: 121 Q 121 + Sbjct: 128 K 128 >gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341] gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341] Length = 238 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +RK+ G++V EA++ + E + + +++D + + Sbjct: 4 RILIVDDEERIRKLLVMYLEKEGYIVDEASNGHDGLERLKYMDY-SCVLLDVQLPMLNGK 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +R+ V + + D + + G GA+ +++KPF+ L + + Q Sbjct: 63 SILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQR 119 Query: 121 QK 122 K Sbjct: 120 TK 121 >gi|293189340|ref|ZP_06608063.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus F0309] gi|292821803|gb|EFF80739.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus F0309] Length = 225 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + + G+ V + EA + +V+D + + Sbjct: 1 MTTVLLVEDDPAISEPLARALGREGYDVRAHATGAEALADVRG---VDLVVLDLGLPDMD 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V + L D M+ G AGA+ ++ KPF L +R L + Sbjct: 58 GLDVAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117 Query: 121 QKSKDENQFLDA 132 Q ++ L A Sbjct: 118 QAAEPAEGELRA 129 >gi|289422314|ref|ZP_06424164.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] gi|289157259|gb|EFD05874.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] Length = 237 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++LLV+ + + G+ V +A++ E E EK + + ++D M Sbjct: 1 MKVYTVLLVEDEKDIADAVEVYLRNQGYEVIKASNGQEGLEMIEKNEV-HLAIVDLMMPV 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ D V L + + I G GA+ ++ KPF L + Sbjct: 60 MDGTTMIMKLREKY-DFPVIILSAKSEEVDKIMGLNIGADDYVNKPFKPLELLARVNSQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175] gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175] Length = 240 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + + +A +A E + + +++D M + Sbjct: 11 MK-ILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRLD 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + L + I G GA+ ++ KPFN + ++ L + Sbjct: 70 GISVVHEVRKENAQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRR 129 Query: 121 QKSKDE 126 E Sbjct: 130 STITQE 135 >gi|261409329|ref|YP_003245570.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261285792|gb|ACX67763.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 1219 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + V A + EA E ++ + +++D M + Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQQNPDFDLVLMDMMMPEMDG 1158 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+MP + + L + E AGA+ ++ KP E L MR Sbjct: 1159 YEAMRRLREMPEFDKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M LL+V+ I R L + A++ EA K+ + +V+D + + Sbjct: 952 MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRY-DCMVLDLMLTDMT 1010 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + +R D+ + + K R A S ++K + E L Sbjct: 1011 GFELLDQIRDDENLVDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ ++ + GF A E K P+ +++D + + Sbjct: 831 KVLLIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMA-KSYRPDAIILDIQLPVIDG 889 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + ++ + + V+ + + +++ G GA ++L KP +RE L A Sbjct: 890 WSVMGELKSSAVTRHIPVHVISV---VDEVKQGLMMGAIAYLKKPSSREALEDA 940 >gi|167759600|ref|ZP_02431727.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704] gi|167662726|gb|EDS06856.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704] Length = 233 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + + G+ V +A EA + KE + LVID M + Sbjct: 3 MSKILVCDDDKEIVEAIDIYLSQEGYEVLKAYDGEEALKVLGKEK-IDLLVIDVMMPKLD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 62 GIRATLKIREAN-NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 120 >gi|153871117|ref|ZP_02000368.1| two-component response regulator [Beggiatoa sp. PS] gi|152072416|gb|EDN69631.1| two-component response regulator [Beggiatoa sp. PS] Length = 295 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 4/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + RK+ R G+ EA + A E KE LP +++D M + Sbjct: 1 MSKVLIVDDNLKTRKMLRRHLLKNGYETLEAENGHVALESV-KENLPEVVLLDVMMPDMT 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +RQ P V++ L E+ + G GA+ ++ KPF+ L +R + Sbjct: 60 GIEVCQKLRQTPHYELVYIIMLTALTSSEQKVEGLDQGADDYITKPFDVYELMAHIR-VG 118 Query: 119 QMQKSKDENQFLDAI 133 + K +D + Sbjct: 119 ERTVIKKREATIDGL 133 >gi|17549417|ref|NP_522757.1| two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431670|emb|CAD18347.1| probable two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 245 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R + GF V + + P +V+D M V Sbjct: 4 TKILVVDDDVELRDLLREYLSQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A DV V L D I G GA+ +L KPF+ L + + + + Sbjct: 63 LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122 Query: 122 KS 123 ++ Sbjct: 123 QA 124 >gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] Length = 236 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + K+ ++ + A S EA + + +++D + G+ F Sbjct: 6 ILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLL-ADRAVDLVLLDVMLPGIDGFE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ L ++ + L + + + G G + +++KPF+ L +R + + Sbjct: 65 VCRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRD 124 Query: 122 KSKDENQF 129 + ++ Sbjct: 125 RRGKQDVR 132 >gi|322417782|ref|YP_004197005.1| response regulator receiver protein [Geobacter sp. M18] gi|320124169|gb|ADW11729.1| response regulator receiver protein [Geobacter sp. M18] Length = 121 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L VD + + G+ V A EA E E+ + P+ +++D +M G Sbjct: 1 MKTILAVDDEPNILMSIEFILQMEGYQVHTARDGDEALEVAER-VRPDLILLDVNMPGKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ V L + + G GA+ ++ KPF E L A+R Sbjct: 60 GYEVCRILRERRDLAATKVILLTAKGQALERKKGIEMGADDYVTKPFATEELLGAVRAQL 119 Query: 119 Q 119 + Sbjct: 120 E 120 >gi|288941878|ref|YP_003444118.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288897250|gb|ADC63086.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 303 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD L + + AT +A E + P+ +++D M + Sbjct: 8 TILIVDDQPANIHALAALLKK-DYRILTATRGEKALELAARTPPPDLILLDIVMPDMDGH 66 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + ++ + G GA ++ KPF+ +R +R + Sbjct: 67 EVCCRLKNDEATKAIPIIFVTALGEERDEEHGLNLGAADYISKPFSPAIVRARVRNQIHL 126 Query: 121 QKSKDENQFLD 131 + D + + Sbjct: 127 KLRTDRLEQVA 137 >gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 269 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ +A S EA +++D M + Sbjct: 42 MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 100 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + + + I G GA+ ++ KPFN + ++ L + Sbjct: 101 GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 159 Query: 121 QKSKDEN 127 +++ N Sbjct: 160 SQNEVTN 166 >gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 242 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + + V A A K + ++D M + Sbjct: 11 RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKY-DLFILDLMMPKIDGI 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ T+V + L + I G GA+ ++ KPF+ + ++ L + Sbjct: 70 EVCRKLREK---TNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126 >gi|258404681|ref|YP_003197423.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] gi|257796908|gb|ACV67845.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] Length = 452 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 2/133 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R + D G V EA S + + +D + G+ Sbjct: 1 MQARILVVDDELDIRVSLSGILEDEGHTVMEADSGEAGLTAM-AGKEIDLVFLDIWLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R D+ V + E ++ + GA+ F+ KP + E + + + Sbjct: 60 DGLAVLERLRQEWPDIPVIMISGHGTIETAVSAIKNGAHDFIEKPLSLEKVVITANKALE 119 Query: 120 MQKSKDENQFLDA 132 K K EN+ L + Sbjct: 120 FSKLKRENRDLRS 132 >gi|221200233|ref|ZP_03573275.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD2M] gi|221205914|ref|ZP_03578928.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD2] gi|221209274|ref|ZP_03582255.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD1] gi|221169962|gb|EEE02428.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD1] gi|221173926|gb|EEE06359.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD2] gi|221179574|gb|EEE11979.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD2M] Length = 246 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E + P+ +V+D + G Sbjct: 7 VLIVDDDRAIRELIADYLEKNGMRVSLAANGRE-MRSVLDDGAPDLIVLDLMLPGEDGLA 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|254412501|ref|ZP_05026275.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180811|gb|EDX75801.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 650 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 5/132 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M LL+VD + +V ++ G+ V A K P+ +++D M Sbjct: 1 MTKGNLLIVDDTPENLQVLSATLSEQGYQVRGVVKGKMAI-RAAKSAQPDLILLDIRMPE 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + ++ P D+ + ++ D + R G ++ KPF E + + Sbjct: 60 MDGYQVCETLKADPETRDIPIIFISAIDDVLDKVKAFRVGGVDYITKPFQVEEVLARVEH 119 Query: 117 LPQMQKSKDENQ 128 +++ E + Sbjct: 120 QLTIRRLSQEVR 131 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + R + L GF V EA + E E P+ + +D M + Sbjct: 425 RILVVDDTPENRLLLTKLLEPIGFEVREAANGMECLPLWET-WQPHLIFMDTRMPMMDGL 483 Query: 63 --IAHVRQMPL-----------GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109 ++ + + L E+ AG+ F+ KPF E Sbjct: 484 EATRRLKSKEKERLSQSNSVLDLSRTIIIALTASAFEERREEILAAGSEDFVRKPFTEEQ 543 Query: 110 LRFAMRELPQMQKSKDE 126 + + ++ +E Sbjct: 544 IFDTIAHHLGVRYRYEE 560 >gi|297582881|ref|YP_003698661.1| putative two component sigma54 specific transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141338|gb|ADH98095.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Bacillus selenitireducens MLS10] Length = 419 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+ D +R++ GF VF A EA +KE + + D ME + Sbjct: 1 MERILVADDEQDLRELLVSRLKRKGFEVFGAADGEEALALLQKERY-DLGIFDIRMEPMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + V+ P ++ V L E I + GA +L KP+N L + + Sbjct: 60 GLTLLEEVKSRPDTLEMEVVMLTGHGTMETAIEAMKRGAYDYLTKPYNLSELEVVISKAL 119 Query: 119 QMQKSKDENQFLDAI 133 + +K ++NQ + + Sbjct: 120 EKKKLTEDNQTMRNL 134 >gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum] Length = 223 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G++V +A E F + +++D + + Sbjct: 2 RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 123 SKDENQFL 130 ++ + Sbjct: 121 GHSSSEII 128 >gi|329928581|ref|ZP_08282448.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937697|gb|EGG34106.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 1219 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + V A + EA E ++ + +++D M + Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQQNPDFDLVLMDMMMPEMDG 1158 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+MP + + L + E AGA+ ++ KP E L MR Sbjct: 1159 YEAMRRLREMPEFDKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M LL+V+ I R L + A++ EA K+ + +V+D + + Sbjct: 952 MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRY-DCMVLDLMLTDMT 1010 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + +R D+ + + K R A S ++K + E L Sbjct: 1011 GFELLDQIRDDENLVDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ ++ + GF A E K P+ +++D + + Sbjct: 831 KVLLIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMA-KSYRPDAIILDIQLPVIDG 889 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + ++ + + V+ + + +++ G GA ++L KP +RE L A Sbjct: 890 WSVMGELKSSAVTRHIPVHVISV---VDEVKQGLMMGAIAYLKKPSSREALEDA 940 >gi|317402238|gb|EFV82826.1| osmolarity two component response regulator [Achromobacter xylosoxidans C54] Length = 233 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ N G+ A + P+ LV+D + G Sbjct: 6 TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASD-LPSRITRYAPDLLVLDRMLPGGDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R G D+ V L + I G AGA+ ++ KPF+ L + + + + Sbjct: 65 ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRK 124 Query: 122 K 122 + Sbjct: 125 R 125 >gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM 519] gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+VD ++ K + G ++ + +A E + + + +++D + Sbjct: 1 MANILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDY-DIILLDLMLPIID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E VR+ +DV + L + + I G GA+ ++ KPFN L+ + + Sbjct: 60 GFEVCKKVRE---TSDVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAIL 116 Query: 119 QMQKSKDE 126 + + + Sbjct: 117 RRMEKSKK 124 >gi|254720504|ref|ZP_05182315.1| Probable transcriptional regulator ycf27 [Brucella sp. 83/13] gi|265985535|ref|ZP_06098270.1| two-component system response regulator [Brucella sp. 83/13] gi|306838128|ref|ZP_07470985.1| transcriptional regulator ycf27 [Brucella sp. NF 2653] gi|264664127|gb|EEZ34388.1| two-component system response regulator [Brucella sp. 83/13] gi|306406865|gb|EFM63087.1| transcriptional regulator ycf27 [Brucella sp. NF 2653] Length = 238 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 1 MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +L+VD +R + G V A + E + + + +++D + Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G +E VR + V + L D I G GA+ ++ KPF+ L +R Sbjct: 60 GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116 Query: 116 ELPQM-QKSKDENQFLDAI 133 + + + ++ + L I Sbjct: 117 AVLRRFEGNRGPQRALTQI 135 >gi|251778066|ref|ZP_04820986.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082381|gb|EES48271.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+V+ + N+ G+ VF+A + E + E + ++D M Sbjct: 1 MKLYNVLIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNET-IHLAIVDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ D V L + + I G GA+ ++ KPFN L + Sbjct: 60 MDGIQMTMKLRSKF-DFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|189468055|ref|ZP_03016840.1| hypothetical protein BACINT_04449 [Bacteroides intestinalis DSM 17393] gi|189436319|gb|EDV05304.1| hypothetical protein BACINT_04449 [Bacteroides intestinalis DSM 17393] Length = 1481 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 LLV+ + +R R +F + + EA + K LP+ ++ D M Sbjct: 1222 LLVEDNSELRLFLRSIFASE-YRIVEAVDGMQGWSKALK-FLPDIIISDVMMPEKDGIAM 1279 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 +R + + + L + E + G GA+ ++ KPF+ L+ ++ L Q Q Sbjct: 1280 TRELRADMTTSHIPIVLLTAKTSIESKLEGLEYGADDYITKPFSATYLKARVKNLLTQRQ 1339 Query: 122 KSK 124 K + Sbjct: 1340 KLQ 1342 >gi|120435017|ref|YP_860703.1| two-component system response regulator [Gramella forsetii KT0803] gi|117577167|emb|CAL65636.1| two-component system response regulator [Gramella forsetii KT0803] Length = 240 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLKDYLAMNDYEVTHAKNGMEGFEKFKKDD-FDLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNEEIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124 >gi|121593474|ref|YP_985370.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120605554|gb|ABM41294.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 242 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 1/116 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + V G+ A A + P+ ++D + G+ Sbjct: 6 RILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ TD + + V+ + G GA+ ++ KPF+ + ++ + Sbjct: 66 -EVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVL 120 >gi|78061250|ref|YP_371158.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77969135|gb|ABB10514.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 246 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E R + + P+ +V+D M G Sbjct: 7 VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLD-DGAPDLIVLDLMMPGEDGLT 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 227 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 LV+ ++ + G+ + + + E P+ ++D + G+ F Sbjct: 7 LVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNP-PDMWILDIMLPGMDGYEFC 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R +DV + + + + I G G + +L KPF+ L ++ L + S Sbjct: 66 KKIRNE---SDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRSTS 122 Query: 124 KDENQ 128 +++ Sbjct: 123 HRQDE 127 >gi|325928438|ref|ZP_08189629.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325541155|gb|EGD12706.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 278 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 47 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 105 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + ++ Sbjct: 106 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 165 Query: 124 KDEN 127 +E Sbjct: 166 SNEQ 169 >gi|315612077|ref|ZP_07886994.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315315879|gb|EFU63914.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ V A E E K + ++ D M + Sbjct: 3 KTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + + + I G GA+ F++KPF+ L + + + Sbjct: 62 YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRRL 121 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 122 SRGRETEQIE 131 >gi|322417554|ref|YP_004196777.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320123941|gb|ADW11501.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 510 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + D GF A EA E E+E +++D M + Sbjct: 5 KILIVDDEADIALILKLQLEDAGFETERARDGVEALEAVERE-QFTLIMLDIKMPRMDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V + + + + GA ++ KPF+ + + + ++ + Sbjct: 64 EVLSRIRSD--ETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSSDDMLQKVERAIKIDR 121 Query: 123 SKDENQFLD 131 ++ EN L Sbjct: 122 TRKENARLQ 130 >gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 234 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF VF A S EA +E+ P+ ++D M G+ F Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQGFEVFSANSGTEAL-RVAREVNPDAYIMDVMMPGMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D V YL + ++ I G GA+ ++ KPF+ E + +R + + Sbjct: 67 ELLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124 >gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein [Desulfobacterium autotrophicum HRM2] gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + ++ G+ V A + E + + +++D M + F Sbjct: 13 ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGC-FHAVILDVMMPKMDGF- 70 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 ++Q+ +D+ V L + I G GA+ +L K F+ L +R + + + Sbjct: 71 EMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRL 130 >gi|220910098|ref|YP_002485409.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219866709|gb|ACL47048.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 125 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+V+ S + + L G A + A ++ P+ +++D M G Sbjct: 1 MKTVLVVEDSRTEQHLIISLLEKSGLQAVLAETAESALDWLAHNAPPDLILMDIVMPGAN 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE VR P D+ + + + R G N+++ KPF L + E Sbjct: 61 GLELCREVRAQPQFKDIPIIFCSSKDQEFDRFWALRQGGNAYITKPFEPNELIQTVCEYL 120 >gi|220906814|ref|YP_002482125.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219863425|gb|ACL43764.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 373 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + V L + + A +A F E +L P+ +++D + GV Sbjct: 1 MAVILIVDDEPVNFDVIETLLSGDNHQLHYAADSVDAFGFLE-QLQPDLILLDVMLPGVN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + + + + E + +AGA+ F+ KP + LR ++ + Sbjct: 60 GINMCQIIKANPEWQSIPIIMITALSEKEDLARCLKAGADDFISKPVHSLELRARVKSML 119 Query: 119 QMQKSKDENQFLDAI 133 ++++ Q + Sbjct: 120 RIKRQYGRLQQFSEL 134 >gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|310826289|ref|YP_003958646.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612] gi|308738023|gb|ADO35683.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612] Length = 231 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + + G+ +F+A S EA E E + +++D M + Sbjct: 2 NILICDDEREIVDALELYLKNEGYDIFKAYSGKEALEIV-SENTIHLILMDIMMPEMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + +L + + I G G + ++ KPFN + ++ + Sbjct: 61 HATLKIRE-TANIPIIFLSAKAEDNDKIMGLTVGGDDYITKPFNPLEVIARVKSQLRR 117 >gi|298504480|gb|ADI83203.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 455 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD R++ + + + A EA + E + ++ D M+G+ Sbjct: 4 TILIVDDERGQREILQTILEGERYETTTAAGGQEALALLD-EREFDVILTDLKMQGMSGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + + GA +L KP R+TL +R + + Sbjct: 63 ELLERLLAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLLLTLRRAVERVR 122 Query: 123 SKDENQFL 130 EN+ L Sbjct: 123 LLKENRAL 130 >gi|271501297|ref|YP_003334322.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270344852|gb|ACZ77617.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 224 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 2/129 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + + + GF V A + ++ +V+D S+ + Sbjct: 2 RLLLVEDHPELAHWLKKALGEAGFAVDLVGDGVAA-DHLLQQEAYTLVVLDVSLPRMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G ++ V L + G GA+ +L KPF L +R L + + Sbjct: 61 ALLARLRKRGQNLPVLLLTARASVADRVKGLNLGADDYLTKPFELAELEARLRALLRRSQ 120 Query: 123 SKDEN-QFL 130 + ++ Q L Sbjct: 121 GQVQDVQRL 129 >gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EAT+ EA + ++ + + ++D + G+ Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 60 GLEVCKAIRK--ENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 117 Query: 119 QMQKSKDE 126 + + +E Sbjct: 118 RRIEVHEE 125 >gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 226 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + G+ V A A +EL + +++D + G+ Sbjct: 1 MTHILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAA-RELDIDLVILDWMLPGLS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEK--MIAGARAGANSFLLKPFNRETLRFAMRELP 118 R G V V L + + +AG AGA+ +++KPF+ E L +R Sbjct: 60 GLEICRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHL 119 Query: 119 QMQKSKDENQFLD 131 + + D L Sbjct: 120 RRNQDADAGDILQ 132 >gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A + EA +++D M + Sbjct: 1 MK-ILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHTTPDIALMILDIMMPEMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I V+++ + + + L + I G GA+ ++ KPFN + ++ L + Sbjct: 60 G-IEVVKEVRKDSQIPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSK 124 + + Sbjct: 119 SQDQ 122 >gi|39995705|ref|NP_951656.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982469|gb|AAR33929.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298504717|gb|ADI83440.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 470 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD I+R+ R + G+ V + S A E + E ++ D M G+ +E Sbjct: 6 VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQDENY-GLVITDLKMPGMSGME 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ + +V V + + + + GA ++ KPF + + +R+ + + Sbjct: 65 VLKAIKVLQ--PEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPDQITEKVRKALEQR 122 Query: 122 KSKDENQFLD 131 EN FL Sbjct: 123 AVLLENIFLK 132 >gi|114319830|ref|YP_741513.1| response regulator receiver protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226224|gb|ABI56023.1| response regulator receiver protein [Alkalilimnicola ehrlichii MLHE-1] Length = 123 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + L G+ V AT EA E E+ P+ +++D M Sbjct: 3 KRILIVDDEANIVLSLEFLMKQAGYEVETATDGDEALEAIERAK-PDLVLLDVMMPRKNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R D+ V L + + G GA+ ++ KPF+ + + +REL Sbjct: 62 YEVCETIRASDDWKDILVVMLTAKGRDVEREKGLSLGADDYITKPFSTQEVIDKVRELL 120 >gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A] gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A] gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 240 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 8/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A A + +L P+ +++D + + Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAA-SQLRPDLVIMDIMLPVMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + V V L D + G AGA+ ++ KPF+ L + L + Sbjct: 72 LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130 Query: 122 KSKD------ENQFL 130 + EN+ L Sbjct: 131 ERAKVIAKNSENEKL 145 >gi|323484284|ref|ZP_08089652.1| hypothetical protein HMPREF9474_01403 [Clostridium symbiosum WAL-14163] gi|323402436|gb|EGA94766.1| hypothetical protein HMPREF9474_01403 [Clostridium symbiosum WAL-14163] Length = 209 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ V+ + + A++ A P+ +++D + Sbjct: 20 MNKPLILVVEDDAAVKNLITTTLETHQYRFRTASTGETAVMEAVSHN-PDVILLDLGLPD 78 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I +R++ + + L + I AGA+ +L KPF+ E L +R Sbjct: 79 MDG-IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTF 137 Query: 119 QM 120 + Sbjct: 138 RR 139 >gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L D + + + G+ V A + +A + +E P+ V+D M + F Sbjct: 8 KIMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLA-REFRPHVAVLDVMMPEMNGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ V L + D + + G + GA+ +++KPF+ L + + Q Sbjct: 67 EVCQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYVVKPFSFNELLARIEARLRNQ 125 >gi|270293867|ref|ZP_06200069.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275334|gb|EFA21194.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALRM--DIGSYSLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ + + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122 Query: 121 QKS 123 + Sbjct: 123 TRQ 125 >gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 14 KNILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 72 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 73 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 129 Query: 120 M 120 Sbjct: 130 R 130 >gi|210609626|ref|ZP_03288077.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787] gi|210152816|gb|EEA83822.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787] Length = 233 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ +R + + A + +A P+ +++D + Sbjct: 1 MNKPLILVVEDDTAIRNLITTTLETQDYRFHTAPNGVQAL-LESVSQKPDIMLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I ++++ +++ + + + I AGA+ +L KPF+ + L +R Sbjct: 60 MDG-IEIIKKVRSWSNLPIIVISARSEDRDKIDALDAGADDYLTKPFSVDELLARLRVTL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 226 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ +R V + F V + +A + +++ + +++D + + F Sbjct: 2 RILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQH-FDLIILDVMLPEIDGF 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +V V +L + I+G + GA+ +L KPF E L + L + Sbjct: 61 QICEQIRLTDM--EVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKR 118 Query: 121 QKSKDEN 127 EN Sbjct: 119 TSKSPEN 125 >gi|299535842|ref|ZP_07049163.1| KDP operon transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729042|gb|EFI69596.1| KDP operon transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 235 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 44/127 (34%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + A A + + P+ ++D + + Sbjct: 3 KRILVVEDDVAIANLIKMTLATNHYEFDIARDGNSALQKALT-IKPDVFILDLGLPDIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ + + + I AGA+ ++ KPF+ E L +R + Sbjct: 62 V-ELITKIRSWNQTPIIVVSARGEEHDKINALDAGADDYVTKPFSVEELLARIRVALRRM 120 Query: 122 KSKDENQ 128 + + Sbjct: 121 AYEQPLE 127 >gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EAT+ E + ++ + + ++D + G+ Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTV-DIALLDVMLPGID 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 120 Query: 119 QMQKSKDE 126 + + +E Sbjct: 121 RRIEVHEE 128 >gi|163735689|ref|ZP_02143120.1| DNA-binding response regulator [Roseobacter litoralis Och 149] gi|161391117|gb|EDQ15455.1| DNA-binding response regulator [Roseobacter litoralis Och 149] Length = 243 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R G A S + + K+ + +V+D M G Sbjct: 7 RILVVDDHAEIRHSVTRYLKINGMRATGAKSAAD-MDAQLKDYTFDLIVLDIMMPGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R + + L + + I G GA+ +L KPFN L + + + Sbjct: 66 AACARLRRQHQSIPILMLTALGEDDDRIKGLDTGADDYLAKPFNPGELLARINAILRR 123 >gi|197117408|ref|YP_002137835.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] gi|197086768|gb|ACH38039.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] Length = 441 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L++D + L ++ + ++ A P+ +++D M G+ F Sbjct: 15 ILVIDDDANNLAIVSSLLQEYSYTIYVAEDGESGIRRALL-TRPDLILLDVLMPGIDGFE 73 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + D+ V ++ + ++ + G AGA +++KP RE + + ++ Sbjct: 74 TCQRLKAVEATRDIPVIFMTALAEMDQKVRGFDAGAVDYIIKPLQREEVLARVGVHIHLR 133 Query: 122 KSKDENQFLDA 132 E Q +A Sbjct: 134 HLAKELQETNA 144 >gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L++V+ +R++ G+ V S +A E + E P +++D + + + Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNEN-PELVILDIMLPDMDGY 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 L DV + L + +AG AGA+ +L KPF+ E L ++ L + + Sbjct: 65 EVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124 >gi|87312161|ref|ZP_01094265.1| two-component response regulator [Blastopirellula marina DSM 3645] gi|87285135|gb|EAQ77065.1| two-component response regulator [Blastopirellula marina DSM 3645] Length = 269 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVL 60 +L+V+ + R+ GF V A E +K + +++D + G+ Sbjct: 12 TRILVVEDEAHLAIGIRYNLEAEGFDVTVVEDGRSALEVVDKNPRQIDIVILDLMLPGMS 71 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G D+ + L E G GA+ +++KPF+ + ++ L Sbjct: 72 GYAVCETLRAN--GEDMPILILSARTLPEDRKRGFDVGADQYMMKPFDLDEFISRVKNLL 129 Query: 119 QMQKSKDENQFLD 131 + +D+ + + Sbjct: 130 AARNRRDQARQRE 142 >gi|256420288|ref|YP_003120941.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035196|gb|ACU58740.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 234 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 2/124 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ V V + + G+ V +T A E + + ++D M Sbjct: 1 MKARILLVEDDQNVGAVTKKRLEEAGYDVVHSTDGQMAWEQFQS-RTFDICLLDVVMPKK 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + + + +L + E I G + GA+ ++ KPF+ + L + + Sbjct: 60 DGFTLAEQIRRKNDFIPILFLTSKALDEDKIKGFKTGADDYITKPFSMQELLLRIEVFLK 119 Query: 120 MQKS 123 K+ Sbjct: 120 RSKA 123 >gi|225567891|ref|ZP_03776916.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM 15053] gi|225163292|gb|EEG75911.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM 15053] Length = 236 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 2/123 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ VR + + + + +A P+ +++D + + Sbjct: 9 VLVVEDDAPVRNLITTTLESQNYKYMTSANGSQAV-MSAASGNPDIILMDLGLPDMDGV- 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 ++++ + + + D + + AGA+ +L KPF+ E L +R + + Sbjct: 67 DVIKKIRTWSVAPIIVISARSDDKDKVDALDAGADDYLTKPFSVEELLARLRSTLRRIQY 126 Query: 124 KDE 126 + Sbjct: 127 LTQ 129 >gi|154483735|ref|ZP_02026183.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC 27560] gi|149735226|gb|EDM51112.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC 27560] Length = 225 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 8/127 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + + + F + + A S EA + P+ +++D +M G+ Sbjct: 6 KLLIVDDERGIVDMIQSYFQTQ-YDILTAYSGQEALKKVA--CKPDLILLDINMPGMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + +L ++ I G +AGA+ +++KPF+ + L + + Sbjct: 63 TVCQQIREHIA---CPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRR 119 Query: 121 QKSKDEN 127 ++ + N Sbjct: 120 EQRRQNN 126 >gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] Length = 245 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 9/139 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL----PNYLVIDESME 57 LL+V+ +R+ R G+ V + EA + + +V+D + Sbjct: 13 KRLLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLMLP 72 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +E VR+ + + + + G GA+ +L+KPF L R Sbjct: 73 NLNGIELCRRVRKN--NIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCR 130 Query: 116 ELPQMQK-SKDENQFLDAI 133 + + + + ++ Q L + Sbjct: 131 AILRRSETNHEKTQDLSQV 149 >gi|228477380|ref|ZP_04062016.1| response regulator SaeR [Streptococcus salivarius SK126] gi|228250815|gb|EEK10003.1| response regulator SaeR [Streptococcus salivarius SK126] Length = 232 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ V A E E K + ++ D M + Sbjct: 3 KTILLVDDEINILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI+ V + + + + + I G GA+ F++KPF+ L + + + Sbjct: 62 YDFISEV--QYIAPNQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILR 119 Query: 120 MQKSKDENQFLD 131 E + ++ Sbjct: 120 RLSRGGETEQIE 131 >gi|153003972|ref|YP_001378297.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027545|gb|ABS25313.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 475 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R+ R + G+ V EA S +A + E E + + + D + G+ Sbjct: 7 TVLVVDDERNIRRTLRMVLEAEGYAVSEAESAEDALKILEGEPV-DLGIFDIRLPGMDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R L D+ V + D ++ + GA F KP +R+ + ++R + Sbjct: 66 ALLSRARELWRDLPVVVISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALARRS 125 Query: 123 SKDENQFLDA 132 +++ Q L A Sbjct: 126 LEEKVQVLAA 135 >gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp. subtilis str. 168] gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp. subtilis str. 168] gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ykoG gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis] gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp. subtilis str. 168] gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto BEST195] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + +V + G+ V + E + + + +++D + G+ Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGY-SLVLLDVMLPGLSGLE 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + V L + G GAN ++ KPF E L +R + + Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 124 KDEN 127 K E+ Sbjct: 125 KTED 128 >gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 43/127 (33%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 + +V+ + + + G+ ++ P+ +++D + Sbjct: 3 KKIAIVEDEAELASLIEYNLTRHGYETQILGGG-TGTMRALEQAKPDLILLDVMLPDADG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R + V +L D + G G + ++ KPF+ L ++ + Sbjct: 62 FELCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHLR 121 Query: 120 MQKSKDE 126 ++ E Sbjct: 122 REEMDAE 128 >gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 256 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + ++ + GF V E + + +++D + G+ Sbjct: 16 QRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEY-DLILLDVMLPGMNG 74 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G + L + E+++ G + GA+ ++ KPF L + + + Sbjct: 75 FQILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 133 >gi|329890416|ref|ZP_08268759.1| mutant NtrC-like activator [Brevundimonas diminuta ATCC 11568] gi|328845717|gb|EGF95281.1| mutant NtrC-like activator [Brevundimonas diminuta ATCC 11568] Length = 489 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 53/130 (40%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD R++ + + + G+ V A S EA + K + +++D M G+ Sbjct: 3 KTVLVVDDDPTQRRLIQAVLDREGYAVVHAESGGEAIDRLTKGGGADVVLLDLVMPGLSG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G V L E ++ +AGA F +KP + L +R QM Sbjct: 63 MEALAEMRTAGVATPVIVLTANGGIETVVKAMQAGAQDFFVKPVGPDRLLVGVRNALQMT 122 Query: 122 KSKDENQFLD 131 + E L Sbjct: 123 QLTAEIGRLK 132 >gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 236 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +V+ ++++ + G+ V S C + + P+ ++D + G+ Sbjct: 4 KLIYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSEC-QNMKPDLFLLDIMLPGIDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ + + L + D + G GA ++ KPF+ L ++ + + Sbjct: 63 LEVCRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVIFR 122 Query: 120 MQ 121 Q Sbjct: 123 RQ 124 >gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271] Length = 225 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|196230258|ref|ZP_03129121.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] gi|196225855|gb|EDY20362.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] Length = 204 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+ + ++ R + ++GF V A A E E P+ ++D M + Sbjct: 7 NRILVAEDHYVSRHLLERNLQNWGFEVISAQDGAAAAEILEGPEAPSIAILDWMMPRMDG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116 +R+ +++ L + +++ G AGA+ +++KPF+ + LR ++ Sbjct: 67 VEVCQRIRKNHKNPYIYLLMLTAKSQKDEIATGLDAGADDYVIKPFDPDELRARLKVGQR 126 Query: 117 LPQMQK-SKDENQFLDA 132 + ++++ + + L+A Sbjct: 127 VVELERTLEKRVKDLEA 143 >gi|307152914|ref|YP_003888298.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306983142|gb|ADN15023.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 484 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD KV R + G+ + ATS + E E+ + P +++D M + Sbjct: 12 ILVVDDVPSNLKVLRGILEPIGYELTFATSGKQTLERVER-VRPALILLDLMMPDMDGLQ 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + P+ D+ + +L + E + GA ++ KPFN+ L ++ Q++ Sbjct: 71 VCQALYSNPMYQDIPIIFLTASQEEEHLTYAFEQGAVDYINKPFNKAELLARIKTHLQLK 130 Query: 122 KSKD 125 D Sbjct: 131 HYSD 134 >gi|189468545|ref|ZP_03017330.1| hypothetical protein BACINT_04948 [Bacteroides intestinalis DSM 17393] gi|189436809|gb|EDV05794.1| hypothetical protein BACINT_04948 [Bacteroides intestinalis DSM 17393] Length = 1346 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 2 DSLLL-VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 ++LL + +R+ + + V +A + +E+ P+ ++ D M Sbjct: 1101 KNILLLAEDDKDMREYLTDSLSSE-YKVISVPDGGKALDMA-REINPDIIISDIIMPVIQ 1158 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + + V L + E +I G +GAN +++KPF+ L+ +R + Sbjct: 1159 GDELCRILKSSVETSHIPVILLTALCERENIILGLESGANDYIIKPFDLSVLKVRLRNIL 1218 Query: 119 Q-MQKSKD 125 Q Q +D Sbjct: 1219 QNRQHLRD 1226 >gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family protein [Marinobacter sp. ELB17] gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family protein [Marinobacter sp. ELB17] Length = 228 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +LL++ +R + GF V EA + + E + +V+D + + Sbjct: 3 NRVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESC-DIVVLDIMLPDING 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+ + + V L D I G GA+ ++ KP N L + L + Sbjct: 62 L-DVLRQLRVSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRR 119 >gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa] Length = 238 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + D G V + E+ + LV+D + GV Sbjct: 5 RRVLLVEDDAHIADLLTLHLRDEGLEVMHCARGDDGLRQLERGGW-DALVLDIMLPGVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + I G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123 Query: 122 KSKDENQFLDA 132 ++ +N L++ Sbjct: 124 EALAQNARLES 134 >gi|322421476|ref|YP_004200699.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] gi|320127863|gb|ADW15423.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] Length = 534 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L VD + + + GF V A++ EA ++ + + +++D M + F Sbjct: 7 RILCVDDEPMNLTLLEAMLLLRGFEVVTASNGLEALGEIQRGRV-DIVLLDVMMPEMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ V + E I G AGA F+ KPF+ + + L ++ Sbjct: 66 EVCRRIKAEERYRNIPVVMITAYAARENRIMGIEAGAEDFISKPFDSAEVLARIGMLLKV 125 Query: 121 QKSKDEN 127 + D+ Sbjct: 126 KALNDQL 132 >gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ ++ GF V A + +A + ++ + +++D + G Sbjct: 1 MTRVLVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGA-DIVLLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R +V V + + + G GA+ ++ KP++ L ++ + Sbjct: 60 GTEVCRALRTRG---NVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|182680446|ref|YP_001834592.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636329|gb|ACB97103.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 273 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD +R + D G+ V A + EA + + +V+D M G + Sbjct: 48 LLIVDDDRRIRALLARFLADQGYRVTTAGNAEEA-TASLRNFAFDLIVLDAMMPGENGFD 106 Query: 62 FIAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R P V V L + E + G AG++ +L KP+ L + + + Sbjct: 107 LLTRLRAQPSDLAHVPVLMLTACTEPEDRVRGFEAGSDDYLGKPYEPRELALRIASILRR 166 Query: 121 QKSKD 125 + + Sbjct: 167 AQPRA 171 >gi|182437261|ref|YP_001824980.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465777|dbj|BAG20297.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 250 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+V+ +R+ + +G+ V A + E + L++D + + Sbjct: 20 SVLVVEDDATIRRAVQLALERYGYRVDVAADGLDGLEAFRAGAH-DLLILDVMLPELDGI 78 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V V + D ++AG AGA+ +++KP + + +R L + Sbjct: 79 GLCRRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRR 135 >gi|71065720|ref|YP_264447.1| putative two component system regulatory protein [Psychrobacter arcticus 273-4] gi|71038705|gb|AAZ19013.1| putative two component system regulatory protein [Psychrobacter arcticus 273-4] Length = 233 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + F GF + A + + +++D + G+ Sbjct: 6 MYKILLIEDNPDIVANIYAFFEPKGFELDNAHNGLSGLALA-ANNRYDVILLDVMLPGMD 64 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ L V L +AG +GA+ +L+KPF+ L ++ L Sbjct: 65 GTKLCKMLRE-ELHDKTPVLMLTARDTILDKVAGFDSGADDYLVKPFSLVELEARIKALI 123 Query: 119 QMQK 122 + + Sbjct: 124 RRHQ 127 >gi|29348581|ref|NP_812084.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340486|gb|AAO78278.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1310 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + + + + V A EA + + +P+ +V D M + Sbjct: 1058 TILVVDDNPDMTDFLKKTLEESFKRVIIAADGVEALQLIKSH-IPDIIVSDVMMPRMNGY 1116 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++++ + + + L D + +I+G + GA+++L KPF E L + + Sbjct: 1117 ELCINIKEDITISHIPIILLTARDDKQSLISGYKNGADAYLTKPFEVEMLMEIISNRLKN 1176 Query: 121 QK 122 ++ Sbjct: 1177 RE 1178 >gi|89893206|ref|YP_516693.1| hypothetical protein DSY0460 [Desulfitobacterium hafniense Y51] gi|219666479|ref|YP_002456914.1| signal transduction histidine kinase, LytS [Desulfitobacterium hafniense DCB-2] gi|89332654|dbj|BAE82249.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536739|gb|ACL18478.1| signal transduction histidine kinase, LytS [Desulfitobacterium hafniense DCB-2] Length = 1018 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 7/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+VD K ++ + V A + A + + ++D M G Sbjct: 691 SILVVDDEFSNLKALMNILTLNQYNVTVAINGEAALHLLKGAFHYDLCILDVMMPGISGY 750 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ ++ + L + E M AG RAGAN F+ KPF L+ + L Q+ Sbjct: 751 EVCRKIRETYSPLELPILLLTAKALPEDMEAGFRAGANDFIEKPFEVRELKCRVSTLVQL 810 Query: 121 QK-----SKDENQFLDA 132 + K E FL A Sbjct: 811 KNSMDLLLKKETAFLQA 827 >gi|328887223|emb|CCA60462.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 263 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++LLV+ ++RK +G+ V A E + L++D + + Sbjct: 37 TILLVEDDEVIRKSVAMALERYGYHVSVAGDGLTGLELFRAGQH-DLLLLDVMLPALDGI 95 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + D +++G AGA+ +++KP + L +R L + Sbjct: 96 GLCRRIRE---TSTAPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRR 152 >gi|312127220|ref|YP_003992094.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777239|gb|ADQ06725.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 234 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++ +VD + ++ G+ V + E EK P+ +++D + Sbjct: 5 TVYVVDDEKDILELVSEYLTQKGYAVKTFENGEGFLEEFEKSE-PDIVILDIMLPDIDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +DV + L + + + G G++ ++ KPF+ L ++++ + Sbjct: 64 EICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120 >gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 220 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LL++ +RKV ++ G+ V EA EA E E + ++D + + Sbjct: 1 MERILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFY-ENTFDLAILDVMVPKID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L + + G GA+ ++ KPF+ + L ++ L Sbjct: 60 GWTICRKIRKESK---IPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLL 116 Query: 119 QMQKSKDENQFLD 131 + + +K E L Sbjct: 117 KRKDTKTEENSLK 129 >gi|307131849|ref|YP_003883865.1| transcriptional regulatory protein tctD [Dickeya dadantii 3937] gi|306529378|gb|ADM99308.1| Transcriptional regulatory protein tctD [Dickeya dadantii 3937] Length = 224 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + ++ GF V A + +E +V+D S+ + Sbjct: 2 RLLLVEDHPELAHWLEKALSEAGFAVDRVGDGVAADQLLLQESY-ALVVLDVSLPRMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G ++ V L + G GA+ +L KPF L +R L + + Sbjct: 61 ALLARLRKRGQNLPVLLLTARASVADRVRGLNLGADDYLTKPFELAELEARLRALLRRSQ 120 Query: 123 SK-DENQFL 130 + E Q L Sbjct: 121 GQIQEVQRL 129 >gi|222149565|ref|YP_002550522.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736547|gb|ACM37510.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 312 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD S GF V ATS A E+ + P+ +++D M G+ F Sbjct: 11 ILLVDDSPEALGFLTDALEQSGFSVLIATSGQGALGIVER-ISPDLILLDAVMPGMDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P V V ++ + E ++ G +L KP N + LR +R Sbjct: 70 TCRQIKANPAVAQVPVIFMTGLSETEHVVHALEVGGVDYLTKPINIDELRARIRVHLANA 129 Query: 122 KSKDENQF-LDA 132 +S + LDA Sbjct: 130 RSAQSARVALDA 141 >gi|218441976|ref|YP_002380305.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218174704|gb|ACK73437.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 465 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D ++ + G+ V +A + A + + P+ +++D M + Sbjct: 13 ILIIDDQAANLRILSEILTQNGYKVRKAINPLSALKAIQSTP-PDLILLDIKMPEMDGYQ 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P +++ V ++ + + G ++ KPF + ++ +Q Sbjct: 72 LCEQIKSDPELSEIPVIFISALDEVFNKVRAFEVGGVDYITKPFQDGEVIARIKNQLLIQ 131 Query: 122 KSKDENQ 128 K + + Sbjct: 132 SQKKQLR 138 >gi|172037422|ref|YP_001803923.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698876|gb|ACB51857.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 353 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 4/127 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + G + A + + P+ +++D M + Sbjct: 5 ILVVDDIPDNLLLIQLALEQDGHQLVSVNDGFSALAQID-QCPPDLILLDVMMPRMDGYE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ + + + + ++ G GA+ F+ KP + L+ +R L +++ Sbjct: 64 VTQKIRQNSRLPYIPILLITAH-EQSNVVKGLDTGADDFIRKPVQIDELQARVRSLLRLK 122 Query: 122 KSKDENQ 128 +S D+ + Sbjct: 123 QSIDQRE 129 >gi|170721093|ref|YP_001748781.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169759096|gb|ACA72412.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 246 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF+ L + + + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 225 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA +A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|331017297|gb|EGH97353.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 160 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + ++ G+MV A A ++ P+ +++D M G+ F Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGISALMRIQR-RRPDLILLDAMMPGMDGFE 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q P +++ V ++ D E ++ G AGA +++KP + + + Sbjct: 72 TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131 Query: 122 KSKDENQ 128 ++ + Sbjct: 132 RTLQSAR 138 >gi|330503204|ref|YP_004380073.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917490|gb|AEB58321.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 227 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + GF V A + +V+D + G+ Sbjct: 2 RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + L + + G AGA+ +L+KPF L + + + Sbjct: 61 QVCKRLRED-GRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRR 119 Query: 121 QKSKDENQFLDA 132 + + Q A Sbjct: 120 SRGSRKRQLQVA 131 >gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + + G V+ A + EA + K + + +++D M + Sbjct: 6 ILVVDDDKDIRDMINIYLVNQGMNVYTAANGIEALDIL-KNIKVDLIILDIMMPKMDGIK 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A ++ + +V + L ++D I G GA+ ++ KPF+ L ++ + K Sbjct: 65 ACMKIREML-NVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRRYKQ 123 Query: 124 KDEN 127 + N Sbjct: 124 LNNN 127 >gi|298375583|ref|ZP_06985540.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268083|gb|EFI09739.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 826 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L+V+ + + L N + + A + E E E +P+ ++ D M + Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIA-AEQMPDLILTDLMMPEM 682 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 VR+ + + + + + ++ + G GA+++L KPFN E L + +L Sbjct: 683 DGYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKL 742 Query: 118 PQMQKSKDE 126 + ++ E Sbjct: 743 LEQRRLLRE 751 >gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GAN ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL++ + + GF V E E E + +++D + + Sbjct: 4 RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSE-QWDLILLDVMLPRLNGM 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + + G GA+ +++KPF E L +R L + Sbjct: 63 EVCRRIRA---AKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119 Query: 121 QKSKDENQFL 130 + Q L Sbjct: 120 VHPEANAQVL 129 >gi|325970799|ref|YP_004246990.1| transcriptional regulator [Spirochaeta sp. Buddy] gi|324026037|gb|ADY12796.1| two component transcriptional regulator, winged helix family [Spirochaeta sp. Buddy] Length = 239 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 + +V+ ++R+ R G+ V ++ ARE + P+ L+ D + F Sbjct: 12 IYIVEDHEVIREGVRQYLELSGYAVRGFANLKSAREAFATQT-PSLLIQDVMLPDGDGF- 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V+Q+ TD V ++ + I G GA+ ++ KPF+ + L ++ + + ++ Sbjct: 70 AFVKQLKEKTDCPVIFMTARTEESDRILGFELGADDYISKPFSPKELVLRVQAVLRRYRN 129 >gi|253579017|ref|ZP_04856288.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849960|gb|EES77919.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 52/134 (38%), Gaps = 4/134 (2%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ +R + + A + A P+ +++D + Sbjct: 1 MNKTLILVVEDDRPIRNLIVTTLKTHDYKYLAAENGSSAILEASSHN-PDIVLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++++ +++ + + + I AGA+ ++ KPF+ E L +R Sbjct: 60 MEGV-EVIKKIRTWSNMPIIVISARSEDTDKIEALDAGADDYITKPFSVEELLARIRVTQ 118 Query: 119 QMQKSKDENQFLDA 132 + + L++ Sbjct: 119 RRLAVMQSGEQLES 132 >gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4] Length = 228 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ V + + + G+ A + + ++ D + + Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + L + G AGA+ +++KPF+ L ++ L + Sbjct: 60 GFELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119 >gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 229 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+ D + + GF +A +E P ++D +M + Sbjct: 6 QSILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQI-RESAPAIALLDWNMPIITG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + V + + + +A AGA+ F+ KPFN + ++ L + Sbjct: 65 LDVCRRLRDTGNRIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRS 124 Query: 122 KSKDENQF 129 + +Q Sbjct: 125 TAISPDQL 132 >gi|303236668|ref|ZP_07323249.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN] gi|302483172|gb|EFL46186.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN] Length = 232 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + ++ + G++V A S EA E + N +++D M + F Sbjct: 8 ILIVDDEVDICEILKFNLETEGYIVDTANSAEEALEL--QLTDYNLILLDVMMGQISGFS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + +L + I G GA+ ++ KPF+ + +R + Sbjct: 66 MAKRMKENVETKHIPIIFLTAKDTENDTITGFNLGADDYISKPFSLREVMLRIRAVLNRT 125 Query: 122 KSKDE 126 K+ + Sbjct: 126 KNVAQ 130 >gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens F0305] gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens F0305] gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] Length = 239 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + G+ A A + P+ +++D + + Sbjct: 13 SILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAAT-YRPDLIIMDIMLPVMDGL 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + + V + L D + G AGA+ ++ KPF+ L + L + + Sbjct: 72 EATKRIVTMRP-VPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVE 130 Query: 123 SKD 125 Sbjct: 131 RAK 133 >gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 246 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + G+ V +A + EL + +V+D ++ G+ Sbjct: 22 KLLVVEDEKKLCDMIAKSLHQAGYEVDTCNDGEQALDMIYAELY-DLIVLDLNLPGMDGM 80 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ + V L + G +GAN ++ KPF+ + L +R L + Sbjct: 81 EILRELRK--ENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRR 138 Query: 121 Q 121 + Sbjct: 139 K 139 >gi|218963798|gb|ACL13561.1| CopR [Pseudomonas fluorescens] Length = 231 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+ + + + + GF V T+ +A + E + L++D M G+ + Sbjct: 2 RLLVAEDEPKIGIYLQQGLTEAGFNVDRFTNGKDALQHALSEAY-DLLILDVMMPGLDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G +V V +L E + G GA+ +L+KPF L +R L + Sbjct: 61 EVLQKVRASGKNVPVLFLTARDRVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRR 118 >gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01] gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US] gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01] gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US] gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] Length = 239 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ V + + V A +A + +E P +++D + + Sbjct: 7 KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEK-PTLILLDWMLPVYDGM 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +DV + L + + + G + +L KPF E L +R + + Sbjct: 66 TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122 Query: 121 QKSKDEN 127 + + Sbjct: 123 LEKMRQQ 129 >gi|223046625|gb|ACM79363.1| GAF sensor hybrid histidine kinase [Arthrospira platensis FACHB869] Length = 785 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD L V A + +A E E++ + +++D M + Sbjct: 663 RRVLVVDDDVRNIFAITSLLEAQDIDVRFAENGRQALERIEQDRDIDLVLMDIMMPEMDG 722 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R+ P + + + L + AGA ++ KP + E L +R Sbjct: 723 YAAIRAIREKPQWSTLPIVALTAKAMQGDRAKCIEAGATDYITKPIDAEQLLSLLRVWL 781 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 16/141 (11%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+S ++ + + GF A S E E L P + ++ ++ + Sbjct: 398 LLIVESDESFAQILYDVAREHGFRTLVALSGAEGLELARA-LTPAAITLELTLPDMDGWV 456 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE----- 116 + ++ + V + D + GA + L KP N E L AM+ Sbjct: 457 VLDRLKHDLATRHIPVQIISALGDEH---RARKRGAIACLHKPANAEWLARAMQAMQRAR 513 Query: 117 -----LPQMQKSKDENQFLDA 132 + ++ + + + L A Sbjct: 514 APRQTIVAGRRDERQRERLAA 534 Score = 41.7 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 3/72 (4%) Query: 10 SHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVR 67 R+ + V S EA E + E L + V+ M G+ LE I Sbjct: 525 DERQRERLAAFIGNGDVKVVAVGSGEEALERLDGE-LFDCAVVALKMAGMSGLELIRRAT 583 Query: 68 QMPLGTDVFVYY 79 + + + Sbjct: 584 AITGLRHLPILV 595 >gi|219667618|ref|YP_002458053.1| signal transduction histidine kinase, LytS [Desulfitobacterium hafniense DCB-2] gi|219537878|gb|ACL19617.1| signal transduction histidine kinase, LytS [Desulfitobacterium hafniense DCB-2] Length = 1016 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 7/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LL VD +V LF + + V AT+ EA E + + +++D M + Sbjct: 689 TLLAVDDDSANLQVLARLFANEPYNVLWATNGLEALELLKSRSDIDLVLLDVMMPRMSGY 748 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ ++ V L + + AG +AGAN F++KPF+ +R L Q+ Sbjct: 749 EVCREIRRQFSLFELPVILLTVRHSPGDIAAGFKAGANDFMIKPFDALEVRARTETLLQL 808 Query: 121 QK-----SKDENQFLDA 132 ++ K E FL + Sbjct: 809 KQSVAAALKAEMDFLQS 825 >gi|311695506|gb|ADP98379.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 228 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +LLV+ +R++ + GF + EA + + + + +V+D + + Sbjct: 3 NRVLLVEDDDELRELLARYLTNQGFTIREAANGRDGLALALGQDC-DIVVLDIMLPDISG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ T + V L D I G GA+ ++ KP N L ++ L + Sbjct: 62 L-EVLRELRAETHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRR 119 >gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612] gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612] Length = 229 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 3/123 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + +L+VD + + + G+ V + S EA E P V+D M + Sbjct: 1 MQTEILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALAS-GLENPPELAVLDVMMPEL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F R + L + I G GA+ ++ KPF L ++ + Sbjct: 60 DGFTLCRRLREKY-TFPIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQLR 118 Query: 120 MQK 122 + Sbjct: 119 RSQ 121 >gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2] gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22] gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2] gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22] gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2] Length = 228 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ V + + + G+ A + + ++ D + + Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + L + G AGA+ +++KPF+ L ++ L + Sbjct: 60 GFELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119 >gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 224 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + + + V + +A E+ + + +++D M + Sbjct: 2 RILLAEDEKELSNALVAILKHNNYSVDAVYNGADALEYGLSQNY-DVIILDIMMPKMNGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G + L + + E I G AGA+ +L KPF L +R + + + Sbjct: 61 ETLENLRKKGIHTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRRK 119 >gi|218264787|ref|ZP_03478491.1| hypothetical protein PRABACTJOHN_04200 [Parabacteroides johnsonii DSM 18315] gi|218221793|gb|EEC94443.1| hypothetical protein PRABACTJOHN_04200 [Parabacteroides johnsonii DSM 18315] Length = 548 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LL++D S +R +H+FN + + EA + + + KE P+ ++ D M Sbjct: 301 KKLLVIDDSDQIRWFLKHVFNKE-YQILEARNGQDGIDVALKEE-PDLILCDVMMPVKDG 358 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ P V L +V+ E +I G AGA+ ++ KPF+ E LR + L + Sbjct: 359 YETCREIKSDPKMAQTPVVMLTAKVESEDVITGIEAGADDYITKPFDVEILRSKINSLMK 418 Query: 120 MQK 122 ++ Sbjct: 419 KRE 421 >gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] Length = 224 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R + + + + + +A ++ + +++D + G+ Sbjct: 2 RLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADY-DGIILDIMLPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D V +L E + G GA+ +L+KPF+ E L +R + + + Sbjct: 61 ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120 Query: 123 SKDENQF 129 + N+ Sbjct: 121 ALVSNRL 127 >gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 227 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + +R+ + + G+ V A + A ++E P+++++D M + Sbjct: 1 MK-ILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQE-QPDFIILDIMMPELD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V +L + + + G GA+ ++ KPF +R ++ + Sbjct: 59 GYSVCKEIRKHDE--QTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIA 116 Query: 119 QMQKSKDEN 127 + +N Sbjct: 117 RRCLKAKQN 125 >gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 229 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + GF V A S A +E P+ LV+D + + F Sbjct: 6 RVLVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREP-PDLLVLDVMLPDIDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G DV +L E + G G + ++ KPF L +R + + Sbjct: 65 AVCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAG 124 Query: 123 SKD 125 D Sbjct: 125 MAD 127 >gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] Length = 236 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + K+ + N G+ + + +A E + + +++D + G+ F Sbjct: 6 ILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSR-KSFDLVLLDVMLPGMDGFE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ L D+ + + + + I G G + +++KPF+ L +R + + Sbjct: 65 LCRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILKRD 124 Query: 122 KSK--DENQFLDA 132 + + + L A Sbjct: 125 RRQGGKIEELLKA 137 >gi|95930792|ref|ZP_01313524.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfuromonas acetoxidans DSM 684] gi|95133140|gb|EAT14807.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfuromonas acetoxidans DSM 684] Length = 384 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +V + + V A S A + E P+ +++D M + Sbjct: 13 KTILVVDDIRENLEVIGGVLQS-DYRVRVANSGQRAIKAAASEPRPDLILLDVMMPEMDG 71 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ P ++ V ++ + G GA ++ KP L + + Sbjct: 72 YAVLRELKANPATKEIPVIFVTAMDSDQDEEFGLALGAVDYVTKPIRPAILLARAQTQLE 131 Query: 120 MQKSKDENQ 128 +++S+D Q Sbjct: 132 LKESRDRLQ 140 >gi|319640073|ref|ZP_07994800.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317388351|gb|EFV69203.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1294 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + D + + A EA KE +V D M + F Sbjct: 1046 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1103 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + L + D I G GA++++ KPF+ + L ++ L ++ Sbjct: 1104 CKAIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1163 Query: 123 SKDE 126 + Sbjct: 1164 LLRQ 1167 >gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 233 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M+S+L++D + + + A E EK + +++D M + Sbjct: 1 MNSVLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPDM 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +V V L + D E ++G R GA+ +L KPF L + L + Sbjct: 61 NGF-QVLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLIR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|291280089|ref|YP_003496924.1| hypothetical protein DEFDS_1712 [Deferribacter desulfuricans SSM1] gi|290754791|dbj|BAI81168.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 470 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 1/132 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD VR + + + V + + A E E ++++ D M + Sbjct: 6 TRILIVDDEDYVRDSLKIILLAENYEVVDVDNGYRALELL-NEKYFDFVITDIKMPEMDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ V + + IA + GA ++ KPF E L + + + + Sbjct: 65 ITLLKKIKEKYPEIPVIVMTGFPSIDNAIAALKEGAFDYVTKPFKVEDLINKLHKAYETK 124 Query: 122 KSKDENQFLDAI 133 K + + L+ + Sbjct: 125 KLRKQVVELNKL 136 >gi|254881065|ref|ZP_05253775.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254833858|gb|EET14167.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1328 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + D + + A EA KE +V D M + F Sbjct: 1080 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + L + D I G GA++++ KPF+ + L ++ L ++ Sbjct: 1138 CKAIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197 Query: 123 SKDE 126 + Sbjct: 1198 LLRQ 1201 >gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1260 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEGV 59 +LLV+ + + R++ L D GF VF A + EA E + + +++D M + Sbjct: 1136 KKVLLVEDNEMNRQIACDLLEDNGFEVFTAENGEEAVELVRQSVPGQYDIVLMDVQMPVM 1195 Query: 60 LE--FIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +R +P G + + + + E A AG + + KP N + +++ + Sbjct: 1196 DGYAATRAIRVLPAGYQSRIPIIAMTANAFEEDRKAALDAGMDEHISKPINFDKMKYILS 1255 Query: 116 ELPQM 120 + Sbjct: 1256 RFLKK 1260 >gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 234 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V+ A S EA +E+ P+ ++D M G+ F Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIA-REINPDAYIMDVMMPGMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D V YL + ++ I G GA+ ++ KPF+ E + +R + + Sbjct: 67 ELLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGN 126 Query: 123 SKDEN 127 + D+ Sbjct: 127 AVDDQ 131 >gi|224538556|ref|ZP_03679095.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM 14838] gi|224519824|gb|EEF88929.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM 14838] Length = 1367 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + + EA + + P+ ++ D M + Sbjct: 1116 RILIVEDEEEILSYLKEELEG-DYRIMTRKNGREAYDTILADT-PDLVISDIMMPEMDGL 1173 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q V V L + E + G GA+++++KPFN E L+ + L Sbjct: 1174 SLCRKIKQNTNVNHVPVILLTAKSKPEDTMEGMATGADAYMVKPFNTELLKSTIANLLAN 1233 Query: 121 QKSKD 125 +K Sbjct: 1234 RKLLK 1238 >gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] Length = 228 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ +R++ + F + + + + +A ++ + + + ++D + G+ Sbjct: 1 MERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKV-DLAILDLMLPGMN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R D+ V L + I G GA+ +L KPF+ L +R L Sbjct: 60 GYDILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLL 119 Query: 119 QMQKSKDEN 127 + K + Sbjct: 120 RRSKKDERL 128 >gi|50084005|ref|YP_045515.1| component of chemotactic signal transduction system [Acinetobacter sp. ADP1] gi|49529981|emb|CAG67693.1| component of chemotactic signal transduction system [Acinetobacter sp. ADP1] Length = 1437 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++VD S VRKV L G+ V A +A E E + P+ +++D M + F Sbjct: 1310 IMVVDDSVTVRKVTSRLLERQGYDVVTAKDGQDALEQLE-HIRPSLILLDIEMPQMDGFE 1368 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++RQ + + + + + + G + ++ KPF + L ++ L Sbjct: 1369 LTRYIRQHSILNSLPIIMITSRTGEKYREIAQQLGVDDYMGKPFQEDDLLTKIQNLLAQN 1428 Query: 122 KSKDENQ 128 K+ +Q Sbjct: 1429 KAIKHSQ 1435 >gi|16762375|ref|NP_457992.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143863|ref|NP_807205.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052748|ref|ZP_03345626.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426105|ref|ZP_03358855.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581244|ref|ZP_03363070.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620677|ref|ZP_03373460.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648768|ref|ZP_03378821.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289807544|ref|ZP_06538173.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825991|ref|ZP_06545150.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300970|pir||AC0943 two-component response regulatory protein STY3812 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504679|emb|CAD09565.1| two-component response regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139499|gb|AAO71065.1| two-component response regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 232 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A E + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGNELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + + V + A E + + +++D + + Sbjct: 1 MK-ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQT-YDYDLILLDVMLPRLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G + + L + G AGA+ +++KPF+ E L +R L Sbjct: 59 GISLCRQIR--SSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L VD + + + L + +G V + E +++ P+ L++D M + Sbjct: 380 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETL-RDVNPDLLILDVEMPYTNGI 438 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR P +++ + +L + D E + GA+ F+ KP L + + Sbjct: 439 ELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 498 Query: 121 QKSKDE 126 K Sbjct: 499 VKLLRR 504 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 5/123 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ D ++R + L G+ VF + EA + P+ +V+D M G+ + Sbjct: 1379 VLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQH-PDVIVLDLLMPGMNGWE 1437 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A +++ + + + ++ KP L ++R+ Sbjct: 1438 TMAMLKESTETKHIPIVICSVYKPTSNHQPSRD--FVDWVSKPVQESYLLHSLRQAIAKS 1495 Query: 122 KSK 124 + Sbjct: 1496 SHR 1498 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ LF F A + EA +E+ P+ L++D + F Sbjct: 1500 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAI-HLSQEVNPDLLILDLILPETDGF 1558 Query: 63 IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRELPQ 119 +++ ++ V + E + G FL K + + EL Q Sbjct: 1559 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQ 1618 Query: 120 M 120 Sbjct: 1619 R 1619 >gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 232 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + L GF A A + + +++D + G+ Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRND-IDIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + ++V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCKELRLV---SNVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 250 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLV+ + + F GF V A E + +++D + + Sbjct: 25 RSILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAI-EGSFDLIILDVMLPVLDG 83 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +RQ+ + V L + +AG +GA+ +L KPF + L +R + + Sbjct: 84 F-EVLRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRR 141 >gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium JCVIHMP022] gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium JCVIHMP022] Length = 240 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A+ A + +L P+ +++D + + Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAA-TQLRPDLVIMDIMLPVMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R + V V L D + G AGA+ ++ KPF+ L + L + Sbjct: 72 LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129 >gi|238894401|ref|YP_002919135.1| hypothetical protein KP1_2384 [Klebsiella pneumoniae NTUH-K2044] gi|238546717|dbj|BAH63068.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 404 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 8/139 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ S + R++ + +G++V EA + +A E + + + ++ D M + Sbjct: 4 QHVLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVDALAILENQPV-SLVISDWEMPEMNG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ G V++ L D + G AGA+ FL KP + LR + + Sbjct: 63 LTLCREIRRRQFGRYVYLILLTAREDPGDLTQGFEAGADDFLSKPVEQSELRARLHAGAR 122 Query: 120 MQKSKDEN-----QFLDAI 133 + + + + +A+ Sbjct: 123 ILSLEADLAARNTRLSEAL 141 >gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3] gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3] Length = 231 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +V+D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQII-STYEVDLMVLDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEMREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|323341209|ref|ZP_08081456.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323091403|gb|EFZ34028.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 243 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ R L + V EA + + ++ + +++D M + Sbjct: 10 KILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDET--IDLVILDIMMPKLNGL 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V V +L + + G G + +L KPF+ L ++ L + Sbjct: 68 KVCEEIRK---TSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRR 124 Query: 121 QK 122 + Sbjct: 125 YQ 126 >gi|170077559|ref|YP_001734197.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885228|gb|ACA98941.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 239 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R + G+ V AT A+E + P+ +++D ++ L Sbjct: 5 KILVVDDDPAIRTLIVRFLGQKGYAVAAATDGQSAKETFQS-FSPDLVILDINLPDTLGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 M D +V L D + G GA+ +L KPF+ L + + + Sbjct: 64 ALCEQ---MQESKDTYVLILTSRTDATDKVRGFTQGADDYLTKPFDIIELEHRVHAILRR 120 Query: 121 QKS 123 Q+S Sbjct: 121 QRS 123 >gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V + + EA E E + +++D M + F Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEK-FDLILMDIMMPKIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + T+ + +L + + + I G +G + ++ KPF+ L M + + Sbjct: 63 -EAIKIIRKLTNTLIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILRRSN 121 Query: 123 SKD 125 ++ Sbjct: 122 VRE 124 >gi|150006575|ref|YP_001301319.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254881522|ref|ZP_05254232.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|294775465|ref|ZP_06740978.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|319642909|ref|ZP_07997545.1| two-component system response regulator [Bacteroides sp. 3_1_40A] gi|149934999|gb|ABR41697.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254834315|gb|EET14624.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|294450706|gb|EFG19193.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|317385457|gb|EFV66400.1| two-component system response regulator [Bacteroides sp. 3_1_40A] Length = 229 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 58/134 (43%), Gaps = 10/134 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + N L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM--ELTQYNLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 Query: 121 ------QKSKDENQ 128 ++++++ Q Sbjct: 123 TSPTQGKEAQEQLQ 136 >gi|29347045|ref|NP_810548.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338943|gb|AAO76742.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1321 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + + + ++ + A+ EA + + P+ +V D M + Sbjct: 1062 SILVVDDNPDLTDFLKKALGEYFKRILTASDGVEALQLIKSHT-PDIIVSDVMMPRMNGY 1120 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++++ + + V L D + ++G + GA+++L KPF E L +R + Sbjct: 1121 ELCKNIKEDIAISHIPVILLTARDDKQSQMSGYKNGADAYLTKPFEVEMLMELIRNRLKN 1180 Query: 121 QKSKDENQFLDA 132 ++ + ++L+A Sbjct: 1181 REHTKK-RYLNA 1191 >gi|189345725|ref|YP_001942254.1| response regulator receiver protein [Chlorobium limicola DSM 245] gi|189339872|gb|ACD89275.1| response regulator receiver protein [Chlorobium limicola DSM 245] Length = 124 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+VD S +R++ H F V A EA + + + LV+D +M G Sbjct: 1 MKPHTILVVDDSPNIRRLLAHNLGRK-FTVLTAGDAAEALDILTRSEKTDLLVVDIAMPG 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F A ++ P ++ + L + E G + GA ++ KPFN E + Sbjct: 60 MDGFSLTALIKSNPEYRNIPLVMLTAKDCSEDREKGLKLGAADYMTKPFNLEEFSEKIET 119 Query: 117 LPQMQ 121 L + Sbjct: 120 LLKRH 124 >gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1211 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + V A + + E + N +++D M + Sbjct: 1091 RKILIVDDDLRNIFALTSFLESYQMQVLFAENGRDGIERLQTNPDINIVLMDIMMPEMDG 1150 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ + + L + AGA+ ++ KP + E L +R Sbjct: 1151 YETTRAIRQQQQFRSLPIIALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWLY 1210 Query: 120 M 120 Sbjct: 1211 R 1211 Score = 88.7 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 9/123 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ ++ + + GF A + ++ P+ +++D M + Sbjct: 825 LLIIEDDEKFARILLDMAREQGFKAIVALQSKQGLALA-QQFKPDAIMLDIYMPEMDGWT 883 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA---MRELP 118 + ++ P + V+ L + E+ G + GA ++L KP + E L ++ Sbjct: 884 VLDRLKHKPDTRHIPVHILSV---DERQQRGLQLGAITYLQKPVSPEALTQVLTDIKGFI 940 Query: 119 QMQ 121 + Q Sbjct: 941 ERQ 943 Score = 67.1 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 49/141 (34%), Gaps = 13/141 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ + + L + + EA + + +V+D + + Sbjct: 945 RNLLIVEDDPVQAQSIIELIGNGDVQSTAVGTGAEAL-LILRSQHFDCMVLDLGLPDMSG 1003 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEV---DFEKMIAGARAGANSFLLKPF-NRETLRFAMR 115 F I ++Q P + + + E + G A + ++K + E L Sbjct: 1004 FALIEQIKQEPRLLKLPIIVYTGKELSRQEETQLRGL---AETIIIKNVRSPERLLDETA 1060 Query: 116 ELPQMQKS---KDENQFLDAI 133 ++ + + Q L+ + Sbjct: 1061 LFLHRVQANLPQPKRQMLEQL 1081 >gi|312131206|ref|YP_003998546.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907752|gb|ADQ18193.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1314 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+V+ + +R +F V AT+ EA + +K+ P+ ++ D M + Sbjct: 1063 LLIVEDNADLRNYLEEIFGST-LKVSMATNGKEAWDMIQKDT-PDAVLSDVMMPEMDGLE 1120 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V+ P + + + + G +GA+ +++KPFN + L + L Q + Sbjct: 1121 LCSKVKNHPKFAHLPIVLITARAAAVHELEGIESGADDYIVKPFNPKILFSKVTALLQNR 1180 Query: 122 KSKDEN 127 K E Sbjct: 1181 KKLREL 1186 >gi|294508521|ref|YP_003572580.1| response regulator DrrA [Salinibacter ruber M8] gi|294344850|emb|CBH25628.1| response regulator DrrA [Salinibacter ruber M8] Length = 236 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+V+ + F + V A A + + + +++D + F Sbjct: 12 LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFEV 71 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +G V + + E + G GA+ ++ KPFN E L ++ + Q Sbjct: 72 LEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQR 127 >gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 235 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + G+ V + + +A E E + + + ++D + + F Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQKM-DLAILDVMLPDIDGFR 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L +V+ I G GA+ ++ KPFN + ++ + Sbjct: 64 ICQKIREQYFY---PIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119 >gi|255654526|ref|ZP_05399935.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296449294|ref|ZP_06891079.1| response regulator [Clostridium difficile NAP08] gi|296880773|ref|ZP_06904722.1| response regulator [Clostridium difficile NAP07] gi|296261893|gb|EFH08703.1| response regulator [Clostridium difficile NAP08] gi|296428220|gb|EFH14118.1| response regulator [Clostridium difficile NAP07] Length = 224 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + +L+VD + + + F + V+ A S +A + K P+ +++D ++ Sbjct: 3 NKILVVDDEEGIITLLKDYFEMNSYEVYTAQSGKDALKKISKN--PDIILLDINIPEIDG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + +L ++ I G RAGA+ +++KPF+ + L + + Sbjct: 61 IEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117 Query: 120 MQKSKD 125 ++ K Sbjct: 118 REQRKS 123 >gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] Length = 229 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ +R + F V EA + + EK + V+D + G+ Sbjct: 1 MRRILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEK-FSIDLAVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L I G GA+ +++KPFN L ++ + Sbjct: 60 GFKVCDELRKR--YPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAIL 117 Query: 119 QMQKSKDE 126 + + + Sbjct: 118 RRTGDESQ 125 >gi|170079421|ref|YP_001736059.1| histidine kinase response regulator hybrid protein [Synechococcus sp. PCC 7002] gi|169887090|gb|ACB00804.1| histidine kinase response regulator hybrid protein [Synechococcus sp. PCC 7002] Length = 372 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD ++ + + G V + + +A + + P+ +++D M Sbjct: 13 ILIVDDVPENLQLLSEILVEKGHEVRQVINGKQALKAVAADP-PDLILLDIKMPILDGYG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + + ++ D + G ++ KPF+ + + ++ Sbjct: 72 VCQRLKANPDTAKIPIIFISALNDVFDKVKAFSLGGVDYINKPFDMYEVLVRVENQLKIL 131 Query: 122 KSKDENQ 128 ++ E + Sbjct: 132 RNAQELE 138 >gi|168178301|ref|ZP_02612965.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226948175|ref|YP_002803266.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182671135|gb|EDT83109.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226842363|gb|ACO85029.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 223 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +RK+ + N G+ EA A + +E + ++ D M + Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYRE-YIDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + + + F G R G + +++KP + + + L + Sbjct: 60 GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119 Query: 121 QKSKDENQ 128 + +E + Sbjct: 120 SQIINERR 127 >gi|169824596|ref|YP_001692207.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380339|ref|ZP_07268809.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|303235188|ref|ZP_07321807.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|167831401|dbj|BAG08317.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311829|gb|EFK93840.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|302493675|gb|EFL53462.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 229 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++++VD + K + V +A + +A E EK + ++D MEG+ Sbjct: 1 MYNIMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGFDALELMEKNK-IDLFLVDIMMEGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + ++ + L + + + G GA+ ++ KPF+ L ++ + Sbjct: 60 GLELTQKIREV-SNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRR 118 Query: 121 QKSKD 125 + Sbjct: 119 LELSK 123 >gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] Length = 235 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + + G+ V + + +A + E + L + ++D + + F Sbjct: 4 SILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNL-DLAILDVMLPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L +V+ I G GA+ ++ KPFN + ++ + Sbjct: 63 RICQKIREQYYY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119 >gi|148977298|ref|ZP_01813912.1| probable transcriptional regulator SyrB [Vibrionales bacterium SWAT-3] gi|145963411|gb|EDK28675.1| probable transcriptional regulator SyrB [Vibrionales bacterium SWAT-3] Length = 222 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + G+ V A EF + + + +++D + + Sbjct: 2 MSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGEAALEFIQSNPV-DLVLLDVMLPNLS 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I R++ + L D M+ G +AGA+ ++ KPFN L ++ + + Sbjct: 61 G-IQVARRICQRFATPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 119 Query: 121 QKSKDENQFLDA 132 + + Q L + Sbjct: 120 VGFERQRQSLAS 131 >gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 234 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D ++ + R F + V A + + + + +V+D + + F Sbjct: 4 RILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ + V V L D I G GA+ ++ KPFN L ++ + + Sbjct: 64 -ETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122 Query: 123 SKDE 126 + E Sbjct: 123 ASAE 126 >gi|325288326|ref|YP_004264507.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324963727|gb|ADY54506.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 244 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +V+ ++++ ++ G+ V + + + +P ++D + Sbjct: 1 MTKSLIYVVEDESHIQQLVKYNLEKEGYRVKAFGNGESFLQE-TRLKVPELFLLDIMLPD 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R+ P V + L + + + G GA+ ++ KPF+ + ++ Sbjct: 60 IDGLELCKLLRKNPATHKVPIILLTAKGEEFDKVLGLEIGADDYITKPFSIREMIARVKA 119 Query: 117 LPQM 120 + + Sbjct: 120 VLRR 123 >gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A + +A +E P+ +V+D + Sbjct: 24 RVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAV-RAAREFDPDAVVLDMMLPDFDGL 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R +V V +L + E ++G AG + ++ KPF+ E + +R L + Sbjct: 83 EVLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRR 140 >gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + VF+ + EA C + + V+D + + F Sbjct: 2 NILVVDDEKEIADLIELYLKNENYHVFKFYTAQEAL-ACIEHEKVDLAVLDIMIPDIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V L + + I G GA+ ++ KPF L ++ + Sbjct: 61 T-ILRKIRETLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRR 117 >gi|295101813|emb|CBK99358.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 236 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ VR + G+ A++ A P+ +++D + + Sbjct: 5 TILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPDIDG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 I +R + +++ + L + I GA+ +L KPF+ + L +R + Sbjct: 63 IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLN 122 Query: 123 SKDEN 127 + Sbjct: 123 LLASD 127 >gi|283834685|ref|ZP_06354426.1| hypothetical protein CIT292_08903 [Citrobacter youngae ATCC 29220] gi|291069611|gb|EFE07720.1| transcriptional regulatory protein CpxR [Citrobacter youngae ATCC 29220] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A E + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFDVLVAYDGEQALELLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|259909095|ref|YP_002649451.1| Putative transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|224964717|emb|CAX56234.1| Putative transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|283479121|emb|CAY75037.1| Transcriptional regulatory protein kdpE [Erwinia pyrifoliae DSM 12163] gi|310767005|gb|ADP11955.1| Putative transcriptional regulator [Erwinia sp. Ejp617] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R F V +A ++ P +++D + Sbjct: 1 MTTILIVEDEKEIRRFLRVALEGEDFRVVDAETLKRGL-IEAATRKPQLVILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + + V L D I AGA+ FL KPF L +R + Sbjct: 60 G-CQFIREIRQWSTMPVIVLSARSDERDKITALDAGADDFLTKPFGVGELLARVRVALRH 118 Query: 121 QKSKDE 126 + E Sbjct: 119 RPQNSE 124 >gi|224823780|ref|ZP_03696889.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224604235|gb|EEG10409.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 241 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + ++ R G MV A + + + LV+D M G + Sbjct: 15 KVLLVDDDVELAEMLRDYLEREGCMVALAANGSDGLALALSGDY-HLLVLDVMMPGINGI 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ + V L + D + G GA+ ++ KP L +R + + Sbjct: 74 EVLRRLRQQSA---LPVLMLTAKGDDLDRVLGLELGADDYVPKPCTPRELLARIRAILRR 130 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 131 GALREVRQ 138 >gi|209524850|ref|ZP_03273396.1| response regulator receiver protein [Arthrospira maxima CS-328] gi|284050500|ref|ZP_06380710.1| response regulator receiver, CheY [Arthrospira platensis str. Paraca] gi|209494729|gb|EDZ95038.1| response regulator receiver protein [Arthrospira maxima CS-328] gi|291568065|dbj|BAI90337.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 121 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M+++++V+ S R++ +L + G V A+ EA E +++ P+ +V+D M + Sbjct: 1 MNTIMVVEDSVTQREMISNLLRESGLKVAVASDGVEALEQV-QQISPDLVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P + + + + G + GA++++ KPF L +++L Sbjct: 60 GYELCRRLKSDPKTQKIAIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + ++ + +D ++V A +A ++ + +++D ++ + Sbjct: 2 RILVVEDDLQLAEMLAEVLSDHNYIVDLAEDGEKAWDYVNTLEY-DLVILDVTLPRLDGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R G V L + G AGA+ +++KPF L +R + + Sbjct: 61 GFCQRWR--GKGEATPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRR 118 Query: 121 QKS 123 + Sbjct: 119 SGA 121 >gi|171059251|ref|YP_001791600.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170776696|gb|ACB34835.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 222 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL++ + ++ + F G V A + + P+ +++D S+ GV Sbjct: 1 MK-LLLIEDNLAMQTSLQRAFERRGMQVVTCADGARALDRWQAS-QPDVVLLDLSLPGVD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L + G GA+ +L KPF+ + L ++ L + Sbjct: 59 GLEVLTRARAEGLRTPVIILTARGAVGDRVLGLNTGADDYLAKPFDLDELEARVKALVRR 118 Query: 121 QKSKDEN 127 Q S+ + Sbjct: 119 QPSERHD 125 >gi|152972720|ref|YP_001337866.1| DNA-binding transcriptional regulator CpxR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580779|ref|YP_002241206.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae 342] gi|238892328|ref|YP_002917062.1| DNA-binding transcriptional regulator CpxR [Klebsiella pneumoniae NTUH-K2044] gi|262041695|ref|ZP_06014887.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288937842|ref|YP_003441901.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290513068|ref|ZP_06552431.1| DNA-binding transcriptional regulator CpxR [Klebsiella sp. 1_1_55] gi|330004466|ref|ZP_08304958.1| transcriptional regulatory protein CpxR [Klebsiella sp. MS 92-3] gi|150957569|gb|ABR79599.1| response regulator in two-component regulatory system with CpxA, regulates expression of stress-related genes (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569837|gb|ACI11613.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae 342] gi|238544644|dbj|BAH60995.1| response regulator of stress-related two-component regulatory system [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040957|gb|EEW42036.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288892551|gb|ADC60869.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289774450|gb|EFD82455.1| DNA-binding transcriptional regulator CpxR [Klebsiella sp. 1_1_55] gi|328536587|gb|EGF62916.1| transcriptional regulatory protein CpxR [Klebsiella sp. MS 92-3] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L + GF V A +A + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALALLDDSVDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQFLDA 132 ++ Q +A Sbjct: 118 SHWSEQQQTTEA 129 >gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans TK24] gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1 gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans TK24] Length = 225 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R G V A S + + +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKDEN 127 + + + + Sbjct: 117 RRGERESTD 125 >gi|312889094|ref|ZP_07748653.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311298404|gb|EFQ75514.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1401 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +LLV+ + R + + F + EA++ E + + P+ +V D SM + +E Sbjct: 1141 VLLVEDNDDFRFYLKDNLKEVFF-LIEASNGREGWQKALA-MHPDIIVSDISMPEMTGIE 1198 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L I G GAN ++ KPFN E L ++ + ++ Sbjct: 1199 LCKKLKSDKRTSHIPVVLLTALTGEADQIKGLEIGANDYMTKPFNFEILLSKIKNILTLR 1258 Query: 122 KSKDE 126 + + Sbjct: 1259 DTYKQ 1263 >gi|261252544|ref|ZP_05945117.1| DNA-binding response regulator [Vibrio orientalis CIP 102891] gi|260935935|gb|EEX91924.1| DNA-binding response regulator [Vibrio orientalis CIP 102891] Length = 224 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLV+ + V + F G + A + + E + +++D + + Sbjct: 1 MNKVLLVEDNREVAGILFDYFECEGMELDYADNGELGLQLAL-EGTFDLILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + E M+ G + GA+ +L KPF+ E L ++ L + Sbjct: 60 GLTVCNKLREAGVNTPVLMLTALDNREDMLKGFKHGADDYLTKPFDLEILEARIQALIKR 119 Query: 121 QKSK 124 + + Sbjct: 120 YRGQ 123 >gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F + V EA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDE 126 +++ + Sbjct: 119 SRQASKK 125 >gi|223938484|ref|ZP_03630377.1| response regulator receiver protein [bacterium Ellin514] gi|223892903|gb|EEF59371.1| response regulator receiver protein [bacterium Ellin514] Length = 134 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 53/134 (39%), Gaps = 4/134 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ G+ V A++ +A L+P+ +V+D + + Sbjct: 2 MRPRILIVDDEPDIVELVSFNLRAEGYEVVTASNGLDAVTQA-NSLIPDLIVLDLMLPEM 60 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + P + + L + G GA ++ KPF+ L +++ Sbjct: 61 DGLSVCELLHRFPTTARIPIIMLTAWTSELSRLIGLDYGAEDYMTKPFSPRELVLRVKKT 120 Query: 118 PQMQKSKDENQFLD 131 Q ++ + L+ Sbjct: 121 LQAHPARPDGNQLN 134 >gi|158337180|ref|YP_001518355.1| response regulator [Acaryochloris marina MBIC11017] gi|158307421|gb|ABW29038.1| response regulator [Acaryochloris marina MBIC11017] Length = 121 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD S R++ + D G V AT EA E + P+ +V+D M Sbjct: 1 MQKVLVVDDSITQRQLMSNALEDMGLTVLIATDGVEALEQIQS-TQPDIVVLDIVMPRKN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G + GA+++L KP L +R+L Sbjct: 60 GYEVCREIKSNPTTQNVPVVICSSKTEDFDRYWGMKQGADAYLTKPIQPRELLVIVRQLL 119 Query: 119 Q 119 + Sbjct: 120 E 120 >gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 233 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 12/137 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ R + V + +E +++D + Sbjct: 1 MKRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQED-FALILLDVMLPKED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++R + +V + + + + I G GAN +++KPFN L ++ Sbjct: 60 GFQVCRNLRAV---KNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQI 116 Query: 119 QMQK------SKDENQF 129 + + ENQ Sbjct: 117 ANYERLTQGTQRKENQL 133 >gi|307946075|ref|ZP_07661410.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4] gi|307769739|gb|EFO28965.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4] Length = 242 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R+ GF S A K + + +V+D M G Sbjct: 8 ILVVDDHRDIRETLARYLIKNGFRATSVESAAHA-RKALKAAVIDLVVLDIMMPGEDGL- 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + R + + V L D + G GA+ ++ KPFN L ++ + + + Sbjct: 66 SLCRHLVATGSIPVILLTAMADDMDRVIGLEIGADDYVTKPFNPRELLARIKAVLRRTNT 125 Query: 124 KDENQ 128 + +++ Sbjct: 126 EPKDR 130 >gi|296159560|ref|ZP_06842384.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890268|gb|EFG70062.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 245 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +VR++ GF V A + ++ P +V+D M + Sbjct: 4 SILVVDDDPVVRELVSGYLQGRGFKVDTLEHGM-ALQRQLQDERPALIVLDIMMPELDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A G D+ V L D + G GA+ +L KPF L +R + + + Sbjct: 63 SALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRRG 122 Query: 123 S 123 S Sbjct: 123 S 123 >gi|291619550|ref|YP_003522292.1| BaeR [Pantoea ananatis LMG 20103] gi|291154580|gb|ADD79164.1| BaeR [Pantoea ananatis LMG 20103] Length = 233 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ V G+ V A++ E + P+ +++D + + Sbjct: 7 KRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEHVGR-WQPDLILLDVMLPVMNG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +A +R+ D V + D I R GA+ +++KP++ + ++ + + Sbjct: 66 TEVLAAIRRSG---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 122 Query: 120 MQKSKD 125 + Sbjct: 123 RARQAK 128 >gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 220 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ ++ + R GF V A + + +++D + L Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPY-DLVLLDLGLPKRDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R G + V + + G AGA+ +L+KPF+ + L MR L + Sbjct: 61 DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 Query: 121 QKSKD 125 Q + Sbjct: 119 QAGRS 123 >gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] Length = 243 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + V + + V EA ++ + + +++D + F Sbjct: 18 RILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFS-VDYDAVILDIMLPKKDGF 76 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V +L E + G GA+ +L+KPF E L +R L + Sbjct: 77 EVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRK 134 >gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + + + G+ V S E E + +++D + G+ F Sbjct: 4 NILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENY-DLIILDLMLPGMDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++++ + + V L + + + + G GA+ +L KPF+ E L +R + Sbjct: 63 -SVLKEIRKKSSIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNALRK 119 >gi|237665467|ref|ZP_04525455.1| two-component response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658414|gb|EEP55966.1| two-component response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ ++ K L N GF V A + +A + + +ID S+ Sbjct: 1 MKHIFLVEDDKVIAKNLTLLLNSEGFTVTHAPTRGDAISMLAQNK-FDLALIDISLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++M ++ V +L D ++ G GA+ ++ KPF L ++ Sbjct: 60 GFTVCTEIKEMM---NIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIKNAL 116 Query: 119 QMQKS 123 + +S Sbjct: 117 RKSES 121 >gi|222529736|ref|YP_002573618.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456583|gb|ACM60845.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 234 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++ +VD + ++ G+ V + + EK P+ +++D + Sbjct: 5 TVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSE-PDIVILDIMLPDIDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + L + + + G G++ ++ KPF+ L ++++ + Sbjct: 64 EICKRIRKNSE---VPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRR 120 >gi|115376279|ref|ZP_01463519.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|115366704|gb|EAU65699.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] Length = 614 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD + R G+ EA +A +E P+ +++D M G Sbjct: 292 RTVLIVDDDPTHVQHVREGLAPQGYRFREARDGAQALSAI-REHRPDLILMDVEMPGLGG 350 Query: 60 LEFIAHVRQMPLGTD---VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E V+ + V + + G GA+ +L+KPF+ L ++ Sbjct: 351 VEVCRIVKANAGEGGFGFIPVILMTAR-QAAGKVEGLELGADDYLVKPFDMLELSARVKS 409 Query: 117 LPQMQKSKD----ENQFLD 131 + +++ +D +N+ LD Sbjct: 410 MLRLKALQDALIEKNRELD 428 >gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88] gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88] Length = 222 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+V+ + + G++V A + EA E C E + +++D ++ + Sbjct: 1 MK-LLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDY-DLVILDINLPLMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F V + L + D E + G GAN +++KPF+ E L +R L + Sbjct: 59 GFSVLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRR 118 Query: 121 QKSKD 125 + + Sbjct: 119 KTVQQ 123 >gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 230 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 8/123 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+ D + +R++ + L G+ V A + EA E ++ +++D M Sbjct: 1 MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDES--IGLVILDVEMPKK 58 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + +RQ V + +L G AG + ++ KPF+ L ++ L Sbjct: 59 SGIVVCSEIRQKSF---VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKAL 115 Query: 118 PQM 120 + Sbjct: 116 LRR 118 >gi|298481664|ref|ZP_06999855.1| sensor histidine kinase/response regulator [Bacteroides sp. D22] gi|298272205|gb|EFI13775.1| sensor histidine kinase/response regulator [Bacteroides sp. D22] Length = 1348 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R F D F + E+ + EA E K+ P+ ++ D M + F Sbjct: 1094 VLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGFT 1151 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 ++Q + V L + E + G GA+++++KPFN E L+ + L Sbjct: 1152 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINTR 1211 Query: 121 QKSKD 125 Q+ + Sbjct: 1212 QQLRK 1216 >gi|297161562|gb|ADI11274.1| two-component system sensor kinase [Streptomyces bingchenggensis BCW-1] Length = 1400 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD H+ G V A + E E + + +++D M + Sbjct: 1254 RRILVVDDDIRNVFALTHVLGRVGMTVKYAENGREGLEVLSRNPDVSLVLMDVMMPEMDG 1313 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R P D+ + L + +GAN ++ KP + + L A+ +L Sbjct: 1314 YETIRAIRGTPRLADLPIIALTAKAMPGDREKAIDSGANDYVPKPVDVDRLLSAVCDLL 1372 >gi|295105315|emb|CBL02859.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 236 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + G+ A++ A P+ +++D + Sbjct: 1 MNKPSILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I +R + +++ + L + I GA+ +L KPF+ + L +R Sbjct: 60 IDG-IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQ 118 Query: 119 QMQKSKDEN 127 + + Sbjct: 119 RRLNLLASD 127 >gi|256839706|ref|ZP_05545215.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|256738636|gb|EEU51961.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 4/121 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ V A S EA + + N L++D M + Sbjct: 4 TRILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK--DLTVYNLLLLDVMMREISG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +RQ + + +L + M+ G GA+ ++ KPF+ + ++ + + Sbjct: 62 FKMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|237722001|ref|ZP_04552482.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229448870|gb|EEO54661.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 1369 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+V+ + + D + V T+ +A LLPN ++ D M + + Sbjct: 1117 TILVVEDNRDLNNYICSCLADR-YNVVGVTNGEDALAKAVY-LLPNLIITDLMMPKMNGI 1174 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +++ + + + + + + + G AGA+ ++ KPF+ L+ + L Q Sbjct: 1175 ELIRRLKKDMNTSHIPIIMVTAKTGTDDIKEGYAAGADEYITKPFDASILKIRVDNLIQS 1234 Query: 121 QKSKDEN 127 ++ E Sbjct: 1235 REKLKEL 1241 >gi|187934010|ref|YP_001886396.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722163|gb|ACD23384.1| putative lantibiotic biosynthesis regulatory protein [Clostridium botulinum B str. Eklund 17B] Length = 220 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L +D + + + G +V ++ E + + +++D M + Sbjct: 1 MATILAIDDEIGILNIIKVALEKEGHIVTTVSNANE--ISYNQYTKYDLILLDIMMPEID 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D + +L + E ++ G G + ++ KPF LR + Sbjct: 59 GFTLCNKIRSL---VDCPILFLTAKTMEEDIVKGLSFGGDDYITKPFGISELRARVNAHL 115 Query: 119 QMQKSKDEN 127 + ++ + +N Sbjct: 116 RRERREKQN 124 >gi|167769067|ref|ZP_02441120.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM 17241] gi|167668707|gb|EDS12837.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 13/135 (9%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + + A + A P +++D + Sbjct: 1 MNKPLILVVEDDVPVRNLITTTLKAHDYRFLTAANGESAILEASSHN-PEIILLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I +R++ +++ + + + I AGA+ +L KPF+ E L +R Sbjct: 60 MDG-IEVIRKVRTWSNLPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLRV-- 116 Query: 119 QMQKSKDENQFLDAI 133 + L AI Sbjct: 117 -------TQRRLAAI 124 >gi|241205712|ref|YP_002976808.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859602|gb|ACS57269.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 233 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD +R + + GF V A EA+ L + +++D M G ++ Sbjct: 14 LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGID 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +V + L + I G AGA+ +L KPF+ L + + + Sbjct: 73 VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|119509383|ref|ZP_01628532.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119465997|gb|EAW46885.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 277 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + R + GF A + + +E LP+ +V D +M + Sbjct: 7 KKILVIEDDTVTRNLYVKGLQAKGFDTISAENGLAGIQQA-QEHLPDLVVCDITMPDIDG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +RQ P+ + ++ + G GA+ ++ KPF + L A+ Q Sbjct: 66 YSVLTMLRQDPVTAIIPFIFITGSCTRGCVRKGMELGADDYVTKPFTLDELLRAISTQLQ 125 Query: 120 MQKSKD 125 Q Sbjct: 126 RQAMLQ 131 >gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 224 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 MD +L+V+ + ++ N GF +A + EA + +++D + Sbjct: 1 MDCILIVEDDKKISRIIELQLNHAGFETVKAFNGREAIDVFNNTPDIGLVLLDIMLPQFN 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++R+ ++ V +L + D ++ G GA+ ++ KPF + L ++ Sbjct: 61 GYEVLKYIRERS--PELPVIFLTAKDDTGDVVNGLNLGADDYITKPFIFDELLARIKANL 118 Query: 119 QMQKSKDENQFLD 131 + + + + Sbjct: 119 RKKAAVSPRNRVA 131 >gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium 1_7_47FAA] Length = 243 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 7/126 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L D +R+V R L G+ V EA + +A + + +++D M G Sbjct: 17 RKILFADDDPEIREVVRILLESEGYQVVEAENGEQAASMA--DDTFDLIILDVMMPGRNG 74 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F A +R+ + + +L G AG + +L KPF+ L ++ + + Sbjct: 75 FSACAEIRRR---LNTPILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIR 131 Query: 120 MQKSKD 125 Sbjct: 132 RYHIYK 137 >gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ R GF + + + +++D + G Sbjct: 1 MKRILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNY-DVIIVDLMLPGKD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R++ DV V + + + I G GA+ +L KPF+ L ++ + Sbjct: 60 GY-EIIREIREKLDVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRR 118 Query: 121 QKSKDEN 127 + N Sbjct: 119 YERLKGN 125 >gi|254505487|ref|ZP_05117634.1| chemotaxis protein CheY [Vibrio parahaemolyticus 16] gi|219551604|gb|EED28582.1| chemotaxis protein CheY [Vibrio parahaemolyticus 16] Length = 127 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A +A + ++ D +M + Sbjct: 9 MTKILAVDDSVSIRQMVSHTLKDAGYQVETANDGQDALSKVMSTK-FDVVISDVNMPNMG 67 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R P + + L E +K + G AGA +L+KPFN ETL ++ + Sbjct: 68 GFELVKALRAKPQYKFIPILMLTTETSTDKKMQGKSAGATGWLVKPFNPETLLKTLKRVI 127 >gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 225 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ ++V A+ AREF + + +V+D + + Sbjct: 1 MK-ILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDV-FDYDLIVLDIMLPKLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G + L + + G AGA+ +L+KPF+ E L +R L Sbjct: 59 GISLCQQLRAN--GCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|222054627|ref|YP_002536989.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221563916|gb|ACM19888.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 454 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+D +R+V + + G+ V A + P ++ D M G+ F Sbjct: 4 KILLIDDDTSLRRVLEYNLQEEGYEVITAVDGETGLALFNEHSPP-LVITDLKMPGITGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V + + I + GA+ ++ KPFNR+ L+ +++ +++ Sbjct: 63 QVLSTIKERSPATLVIVITAFGAIDTAIEAMKLGAHDYITKPFNRDQLKLVVKKALELRG 122 Query: 123 SKDENQFLDA 132 +EN+ L Sbjct: 123 LTEENRLLKE 132 >gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 250 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAH 65 +VD + + G+ V A+ +A +E P+ +V+D M G+ Sbjct: 28 VVDDEDSLTDLLSMALRYEGWDVRLASDGPQALATI-REFRPDVVVLDIMMPGLDGLAVL 86 Query: 66 VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + +L + + IAG G + ++ KPF+ E L +R L + Sbjct: 87 TRLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKPFSLEELVARLRALLRR 141 >gi|325479309|gb|EGC82405.1| putative transcriptional regulatory protein OmpR [Anaerococcus prevotii ACS-065-V-Col13] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD +R+ + + G+ EA S EA + E E P ++D + G+ Sbjct: 4 NKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEAEK-PAVAILDIMLPGISG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + R + + + + I G GA+ +++KPFN + L +R L + Sbjct: 63 YEVCERIRDISPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRIRSLMRRV 122 Query: 122 KS 123 Sbjct: 123 NL 124 >gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum WAL-14673] gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum WAL-14673] Length = 236 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L D +R+V R L GF V EA++ EA E + +++D M G Sbjct: 8 KRILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK--SGGSVDLIILDVMMPGKSG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A + V + +L G AG + +L KPF+ L ++ + + Sbjct: 66 ILACLEIRKKL-TVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRR 123 >gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163] gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163] Length = 236 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L D +R+V R L GF V EA++ EA E + +++D M G Sbjct: 8 KRILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK--SGGSVDLIILDVMMPGKSG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A + V + +L G AG + +L KPF+ L ++ + + Sbjct: 66 ILACLEIRKKL-TVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRR 123 >gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ V + + + G+ A + + ++ D + + Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + L + G AGA+ +++KPF+ L ++ L + Sbjct: 60 GFELAKEIRRTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119 >gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 220 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 7/128 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L VD +R + + G V A E K + +++D M G Sbjct: 1 MARILAVDDDEAIRNLLGRVLGKDGHDVRCAACAEEVLAL--KLDRYDLVLLDVMMPGTD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R D + +L + + G GA+ +L KPF LR + Sbjct: 59 GFELCRAIR---GSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHL 115 Query: 119 QMQKSKDE 126 + ++ + + Sbjct: 116 RRERRERK 123 >gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + ++ +V+D M G+ Sbjct: 1 MNKILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1821 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1701 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1760 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1761 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1819 >gi|197337852|ref|YP_002157772.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11] gi|197315104|gb|ACH64553.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11] Length = 221 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + + D G+ V A EF + + +++D + + Sbjct: 1 MSRILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHS-IDLVLLDVMLPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + L D M+ G +AGA+ F+ KPFN L + + + Sbjct: 60 GYQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILRR 118 Query: 121 QKSKDENQ 128 + + Q Sbjct: 119 VGLERQRQ 126 >gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ R + V A E + E + +ID + + Sbjct: 2 RILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGL-YFATEYPYDLAIIDLGLPEISGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + L D++ + G AGA+ +++KPF E + + L + Sbjct: 61 TLIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRR 118 >gi|54302379|ref|YP_132372.1| putative transcriptional regulator CpxR [Photobacterium profundum SS9] gi|46915801|emb|CAG22572.1| putative transcriptional regulator CpxR [Photobacterium profundum SS9] Length = 222 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 2/131 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD ++ ++ + ++ G+ V A + + + + +++D + + Sbjct: 1 MSNILVVDDDVMLCELLTEVLSEEGYDVHYIHDGESALTYMQAHSV-DLVLLDVMLPNID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L D M+ G +AGA+ ++ KPF L + + + Sbjct: 60 GLQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADQYVAKPFRVPELLARITSILRR 118 Query: 121 QKSKDENQFLD 131 + + Q L+ Sbjct: 119 VGLERQRQGLN 129 >gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD + ++ ++ G+ V +A EA + + +++D M G Sbjct: 1 MK-LLIVDDDKEIVELLTIYSSNEGYDVIQAYDGDEALKRISENPDIALIILDIMMPGKD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 DV + L + I+G GA+ ++ KPFN + ++ L + Sbjct: 60 GLTVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYVTKPFNPLEVMARVKSLLRR 119 Query: 121 QKSKDE 126 + D+ Sbjct: 120 SGASDQ 125 >gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101] Length = 227 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ L +G + + EA E + +++D ++ G+ Sbjct: 1 MK-VLIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASP-FDLVLLDLNLPGLD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+MP + V L + + G GA+ +L+KPF L+ ++ L Sbjct: 59 GLEVCRRLRRMPGNQPL-VLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALL 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|294776755|ref|ZP_06742219.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294449410|gb|EFG17946.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1316 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + +R + +D F V +A EA + E + ++ D M Sbjct: 1063 KKILIIEDNEDLRMLIAESLSDE-FQVMQAGDGVEALKLIE-HTDFDLIISDIMMPNKDG 1120 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + V L + E I G +GA+ + KP + L+ +++ + + Sbjct: 1121 ISLCNDIKGDMNTSHIPVILLTAKTSLESKIEGVDSGADLYFEKPVDLTYLKLSIQNIFR 1180 Query: 120 MQKSKDE 126 ++ E Sbjct: 1181 NRRQLKE 1187 >gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 999 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 3/133 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ R++ L GF V A + EA ++ P+ +++D M + Sbjct: 784 RILIVEDVEDNRRLLFELLAQVGFEVRTADNGVEAISLW-QQWHPHLILMDMLMPVMNGS 842 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ G + + + +A + G + F+ KPF + L + + + Sbjct: 843 QATRQIKATQEGEKTVIIAITANAFSDDQLAAIKVGCDDFITKPFREQILFEKIAQHLGV 902 Query: 121 QKSKDENQFLDAI 133 + +E Q ++ + Sbjct: 903 RYRYEEEQTINEV 915 >gi|167758971|ref|ZP_02431098.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704] gi|167663378|gb|EDS07508.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704] Length = 236 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ VR + + A + +A P+ +++D + + Sbjct: 9 ILVVEDDAPVRNLITTTLESQNYKYMAAANGNQAV-MSAASGSPDIILMDLGLPDMDGV- 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ + + + D + AGA+ +L KPF+ E L +R + + Sbjct: 67 DVIKKIRTWSVAPIIVISARSDDHDKVDALDAGADDYLTKPFSVEELLARLRSTLRRVQ 125 >gi|94263701|ref|ZP_01287509.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455900|gb|EAT06059.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 833 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 2/123 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ D ++R + +G+ A E ++ P +ID M G+ Sbjct: 3 ILVADDDPVIRMMLTTQLQGWGYQPLAVADGQAAWEIMQQPDAPRLALIDWMMPGLDGLT 62 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ ++ L + +I+G AGA+ ++ KP + L +R + Sbjct: 63 LCRRIREQARLPAPYLIMLTSKSTPADVISGLEAGADDYITKPHHASELHARIRAGLRSI 122 Query: 122 KSK 124 + + Sbjct: 123 EQR 125 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 5/137 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFG---FMVFEATSVCEAREFCE-KELLPNYLVIDESM 56 M +LL++ + R + F + A S+ A +E++P+ +++D ++ Sbjct: 146 MPLVLLIEDDPGETTLIRRQLTERHTDAFALHSAASMAAATRLLTGEEVVPDVVILDLNL 205 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 I V + D + L + E AGA+ FL K + TLR A+R Sbjct: 206 PDSAG-IRTVERCRSLCDSPIVVLSGNDEPEARRLALEAGADDFLAKGGDGPTLRRALRY 264 Query: 117 LPQMQKSKDENQFLDAI 133 + + + A+ Sbjct: 265 AIIRHRRDSDMRLAAAV 281 >gi|75763996|ref|ZP_00743615.1| Transcriptional regulatory protein resD [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488517|gb|EAO52114.1| Transcriptional regulatory protein resD [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 156 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ + + + EA + A E + + +++D M G + Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ + L + + + G G + +++KPF+ + ++ + + Sbjct: 65 EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121 >gi|332977318|gb|EGK14106.1| transcriptional regulatory protein CpxR [Psychrobacter sp. 1501(2011)] Length = 223 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL D + + + G A + + + + +V+D M V Sbjct: 1 MTHILLGDDDTELSDLLVEYLTNHGIKCDCAYDGEQVLQKLKTNSY-DLIVLDIMMPKVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ+P T V L + D I G GA+ ++ KP N L + + + Sbjct: 60 GL-SVLRQLPTLTQTPVIMLTAKGDEIDRIIGLELGADDYIAKPCNPRELLARINAVIKR 118 Query: 121 QKSKDEN 127 ++ + Sbjct: 119 TTAQATD 125 >gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 +LVD + + R + D G+ A E E P+ L++D M G+ F Sbjct: 1 MLVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEK-PDLLLLDVMMPGMNGFDV 59 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + + +L + D G +AG + +++KPF+ + L + + K Sbjct: 60 CRRMREEGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRRHK 117 >gi|251788984|ref|YP_003003705.1| winged helix family two component transcriptional regulator [Dickeya zeae Ech1591] gi|247537605|gb|ACT06226.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 224 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 2/132 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + + ++ GF V A + ++ +V+D S+ + Sbjct: 2 RLLLVEDHPELAHWLKKALSEVGFAVDLVGDGVAA-DQLLQQEAYTLVVLDVSLPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G ++ V L + + G GA+ +L KPF L +R L + + Sbjct: 61 ALLARLRKRGQNLPVLLLTARAEVADRVKGLNLGADDYLTKPFELAELEARLRALLRRSQ 120 Query: 123 SK-DENQFLDAI 133 + E Q L A+ Sbjct: 121 GQIQEVQRLGAL 132 >gi|284035957|ref|YP_003385887.1| response regulator receiver protein [Spirosoma linguale DSM 74] gi|283815250|gb|ADB37088.1| response regulator receiver protein [Spirosoma linguale DSM 74] Length = 247 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ +R+ L G+ V A + +K P+ ++ D M + Sbjct: 4 RILVIEDVTQIRENIAELLTMSGYEVQMAADGVKGITLAQK-WSPDLILSDIMMPDMDGH 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR P V +L + D + GA+ +L KPF L A+ Sbjct: 63 QVLKSVRASPTLAHVPFVFLTAKSDMLDLRYSMNLGADDYLTKPFRSSELLKAIESRLAR 122 Query: 121 QKSK 124 + + Sbjct: 123 IQQQ 126 >gi|218676439|ref|YP_002395258.1| putative transcriptional regulator CpxR [Vibrio splendidus LGP32] gi|218324707|emb|CAV26330.1| putative transcriptional regulator CpxR [Vibrio splendidus LGP32] Length = 221 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + G+ V A EF + + + +++D + + Sbjct: 1 MSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSNPV-DLVLLDVMLPNLS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I R++ + L D M+ G +AGA+ ++ KPFN L ++ + + Sbjct: 60 G-IQVARRICQRFATPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 118 Query: 121 QKSKDENQFLDA 132 + + Q + + Sbjct: 119 VGFERQRQSMAS 130 >gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787] gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + + GF + A +A E + E +++D ++ Sbjct: 1 MIRILLIEDDEHIAQSIQFFLEGEGFQIKVAAMARQAMELLKSED-FQLVILDVTLPDGN 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ ++ V +L E+++ G GA+ ++ KPF L +R + Sbjct: 60 GFELFEEIKAR---KELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVI 116 Query: 119 QMQKSKDENQF 129 + +EN+ Sbjct: 117 RHTGILEENRQ 127 >gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536] gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli] gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536] Length = 239 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + + + R D G+ + AR +K+ + +++D + Sbjct: 5 KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++RQM + + V + + G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRYIRQM--TSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121 Query: 120 MQKSKDENQFLDA 132 Q++ +N L + Sbjct: 122 RQEAMGQNILLAS 134 >gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 220 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ ++ + R GF V A + + +++D + L Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPY-DLVLLDLGLPRRDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R G + V + + G AGA+ +L+KPF+ + L MR L + Sbjct: 61 DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 Query: 121 QKSKD 125 Q + Sbjct: 119 QSGRS 123 >gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51] gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +LLVD + +V + + + A + A E +KE P+ +++D + Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKES-PDLVILDVMLP 59 Query: 58 --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 E +R+ + V + L + + G GA+ +L+KPF+ L ++ Sbjct: 60 LIDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVK 116 Query: 116 ELPQMQKSKDE 126 L + K++ Sbjct: 117 ALLRRSFDKEQ 127 >gi|121998680|ref|YP_001003467.1| response regulator receiver protein [Halorhodospira halophila SL1] gi|121590085|gb|ABM62665.1| response regulator receiver protein [Halorhodospira halophila SL1] Length = 125 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + L GF V A +A E E +P+ +++D M E Sbjct: 5 ILIVDDEDNIVLSLEFLMKQAGFEVRTAQDGEQAIEALEA-RIPDLVLLDVMMPRKDGYE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V L + + G GA+ ++ KPF+ + + ++ + Sbjct: 64 VCQEIRQRSEWAHLPVVMLTAKGRDVEREKGLAMGADDYITKPFSTQEVVETVQHIL 120 >gi|332703492|ref|ZP_08423580.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio africanus str. Walvis Bay] gi|332553641|gb|EGJ50685.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio africanus str. Walvis Bay] Length = 477 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD R + R + D G+ V EA A P+ +++D + + Sbjct: 13 RSVLVVDDEPGHRLMVRAVLEDNGWRVAEAADGGSALRILRSGPAPDVVLLDMRLPDMDG 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 L + V L + + GA +L KP + + L + + Q Sbjct: 73 LAILRSLRELRPGLPVVMLTAFGSVGSAVEAMKKGAYDYLTKPADNDELEAVLDKAWQYG 132 Query: 122 KSKDENQFL 130 + EN+ L Sbjct: 133 QLLRENERL 141 >gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + G+ E E C E + +++D ++ G+ Sbjct: 3 ILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENY-DLILLDLNLPGIDGLE 61 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + T+ V L V + + G GAN +L KPF+ E L +R L + + Sbjct: 62 ILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFI 121 Query: 124 KD 125 ++ Sbjct: 122 QE 123 >gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 234 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + G+ + +A EA E KE + L++D M + Sbjct: 5 MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEIL-KENEVHLLIMDVMMPRLD 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 GIRATLKIREE-SSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRR 122 >gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC 19977] gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus] Length = 249 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 L+VD + +V F V A A + +E+ P+ +++D + G + Sbjct: 17 RALVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLA-REVDPDVVILDIGLPGVDGI 75 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + +D +V L I G GA+ ++ KPF+ + +R + + Sbjct: 76 EVCRQLR---VFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRR 132 Query: 121 QKSKDE 126 + E Sbjct: 133 PRRAPE 138 >gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41] gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D + +R + + G + + EF + + + +++D M + Sbjct: 4 KILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDV-DLIILDIMMPKMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + L + + I G +GA+ +L KPFN L ++ + Sbjct: 63 QACLKIREE-KSMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRR 119 >gi|255013833|ref|ZP_05285959.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 878 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L+V+ + + L N + + A + E E E +P+ ++ D M + Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIA-AEQMPDLILTDLMMPEM 682 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 VR+ + + + + + ++ + G GA+++L KPFN E L + +L Sbjct: 683 DGYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKL 742 Query: 118 PQMQKSKDE 126 + ++ E Sbjct: 743 LEQRRLLRE 751 >gi|255035279|ref|YP_003085900.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948035|gb|ACT92735.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1404 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 4/120 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+VD +R+ +F + +FEA S E E K LP+ ++ D M G +E Sbjct: 1139 LVVDDDPEIRQYLSTVFAGK-YKIFEAGSGEEGLELVRKH-LPDIVISDVMMGGISGIEL 1196 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + V L + + G GA+ + KPF+ L + + + + Sbjct: 1197 CRQMKLDMALSHIPVILLTASTSQDVRLKGIEGGADDHISKPFDNGILVARVASILRNRN 1256 >gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + V + + +A + EKE + ++D + + F Sbjct: 4 NILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKED-IDLAILDVMLPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V L + I G GA+ ++ KPF L ++ + Sbjct: 63 DICQKIREN---HHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRR 119 Query: 121 QKSKDEN 127 ++ Sbjct: 120 VTKYNQQ 126 >gi|16803100|ref|NP_464585.1| hypothetical protein lmo1060 [Listeria monocytogenes EGD-e] gi|47096149|ref|ZP_00233749.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes str. 1/2a F6854] gi|224500297|ref|ZP_03668646.1| hypothetical protein LmonF1_11754 [Listeria monocytogenes Finland 1988] gi|224502626|ref|ZP_03670933.1| hypothetical protein LmonFR_08914 [Listeria monocytogenes FSL R2-561] gi|254828437|ref|ZP_05233124.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL N3-165] gi|254830171|ref|ZP_05234826.1| hypothetical protein Lmon1_02380 [Listeria monocytogenes 10403S] gi|254898767|ref|ZP_05258691.1| hypothetical protein LmonJ_03090 [Listeria monocytogenes J0161] gi|254911744|ref|ZP_05261756.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes J2818] gi|254936070|ref|ZP_05267767.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes F6900] gi|284801392|ref|YP_003413257.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578] gi|284994534|ref|YP_003416302.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923] gi|16410462|emb|CAC99138.1| lmo1060 [Listeria monocytogenes EGD-e] gi|47015498|gb|EAL06431.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600833|gb|EEW14158.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL N3-165] gi|258608660|gb|EEW21268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes F6900] gi|284056954|gb|ADB67895.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578] gi|284060001|gb|ADB70940.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923] gi|293589695|gb|EFF98029.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes J2818] Length = 220 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 6/132 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+ + + V + G+ V A + EA +KE + +++D M + Sbjct: 1 MEKILIAEDDSAILGVITAFLTEAGYQVMTAKNGIEAYHLFQKET-FDLIIMDIMMPSMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + + + + + G GA+ ++ KPF+ L ++ L Sbjct: 60 GYTLTELIRS---TSTTPILMMTALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQVLL 116 Query: 119 QMQKSKDENQFL 130 + + + + Sbjct: 117 RRVNQSETKKQI 128 >gi|332306725|ref|YP_004434576.1| response regulator receiver modulated metal dependent phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174054|gb|AEE23308.1| response regulator receiver modulated metal dependent phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 331 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 5/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +V + + D + + A S EA E+E LP+ +++D M G+ Sbjct: 9 QKVLIVDDEPANLRVLKKILGDL-YRLTFAKSGEEALRLVERE-LPDLILLDVMMPGMTG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++Q PL + V ++ D G GA ++ KP + ++ +R Sbjct: 67 FDVCQALKQNPLSKGIPVMFVTALSDDVDEAKGFDVGAVDYITKPVSPAVVKARVRTHLS 126 Query: 120 MQKSKDENQF 129 + ++ DE + Sbjct: 127 LVQA-DELRR 135 >gi|322805225|emb|CBZ02789.1| two-component system response regulator QseB [Clostridium botulinum H04402 065] Length = 223 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +RK+ + N G+ EA A + KE + ++ D M + Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKE-YIDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + + + F G R G + +++KP + + + L + Sbjct: 60 GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119 Query: 121 QKSKDENQ 128 + +E + Sbjct: 120 SQIINERR 127 >gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system with baes [Clostridium sticklandii DSM 519] gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system with BaeS [Clostridium sticklandii] Length = 227 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + +VD +R + G+ S + +E +P+ LV+D M+G+ Sbjct: 1 MKHIFIVDDEKRIRDLIEMYLKKEGYNTTTFES-ADGVLSAIREFMPDLLVLDIMMQGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++ V + ++ D I G GA+ +L KPF+ L ++ + Sbjct: 60 GLDLCKEIRKISE---VPIIFVSARSDELDRILGLELGADDYLAKPFSPRELVVRIKTIL 116 Query: 119 QMQKSKDE 126 + E Sbjct: 117 KRTTKSSE 124 >gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1] gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1] Length = 1044 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + + RKV G+ A + EA + E +++D M + Sbjct: 919 KRLLVVDDNEVNRKVACGFLRKLGYEADTAENGQEALDAVL-EKDYGLILMDCQMPVMDG 977 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +P G + + + AG + + KP RE L+ + Sbjct: 978 YEATRQIKALPKGKYLPIIAVTANAMEGDRDKCLAAGMDDYTTKPIRREKLQELLNHWL 1036 >gi|302851080|ref|XP_002957065.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis] gi|300257621|gb|EFJ41867.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis] Length = 2041 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEARE-FCEKELLPNYLVIDESMEGVLE- 61 +L VD + + V + G+ EA + C E +P+ +++D M + Sbjct: 925 ILSVDDEEVNQIVLEEILTSTGYHFARCMDGLEALDWLCASETMPDLILLDCMMPNMSGH 984 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +R++ G + V + + D + ++ G R+G+N F+ KP+ RE L + ++ Sbjct: 985 EFCATLRKVIPGNVLPVIMVSAKSDEDNIVEGLRSGSNDFVRKPYRREELLARIETQLRL 1044 Query: 121 Q 121 + Sbjct: 1045 K 1045 >gi|270295880|ref|ZP_06202080.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270273284|gb|EFA19146.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 1354 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + +R+ R D F + A +E +PN +V D M + Sbjct: 1104 LLVVEDNQDIREYIRQSLGD-DFDILTAEDGSRGWTLA-QERIPNIIVSDIMMPVMDGIQ 1161 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+ + + V L + G AGA+S+L KPF+ + L + L + + Sbjct: 1162 LCRLVKDDIRTSHIPVILLTAKDSLHDKEEGYTAGADSYLTKPFSAKLLHSRINNLLEAR 1221 Query: 122 KSKD 125 K Sbjct: 1222 KKLA 1225 >gi|256391988|ref|YP_003113552.1| response regulator receiver modulated serine phosphatase [Catenulispora acidiphila DSM 44928] gi|256358214|gb|ACU71711.1| response regulator receiver modulated serine phosphatase [Catenulispora acidiphila DSM 44928] Length = 538 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGV-- 59 +L+VD + R V G V EA EA + LP V+D + + Sbjct: 13 RVLVVDDNAANRYVFAQWLRRGGHDVQEAADGAEALDLLAGAGPLPEVAVLDVVLPDMTG 72 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +++ D+ V ++ + G GA+++L KP + E L + + Sbjct: 73 FELCRIIKKADATADIPVVHVSASAISVAERAQGLEGGADAYLTKPVDPEELLATITAVL 132 Query: 119 QMQKSKDENQFLDA 132 + +++ Q L Sbjct: 133 RYTRARRTAQNLAE 146 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] gi|151281399|gb|ABR89809.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G A + + ++ + +V+D + G Sbjct: 7 ILIVDDDREIRELLASYLEKNGMRTSLAANGRQ-MRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRELRA-GKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRA 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPAN 130 >gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + GF F + +A + +K + P+ +++D + G L Sbjct: 4 RILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQK-VNPDLVLLDLMLPGKDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R++ V + L + D ++ G +GA+ ++ KPF + L +R ++ Sbjct: 63 EVCREIREISS---VPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRI 119 Query: 121 QKSKD 125 + + Sbjct: 120 SEPQA 124 >gi|27366393|ref|NP_761921.1| Two component response regulator [Vibrio vulnificus CMCP6] gi|27362594|gb|AAO11448.1| Two component response regulator [Vibrio vulnificus CMCP6] Length = 304 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + K+ L + G++V A S A C+K+ P+ +++D M E Sbjct: 10 ILVVDDTVDNVKLLSQLLQNEGYLVKGALSAKSALRMCQKKK-PDLILLDIMMPEVDGYE 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE---LP 118 +++ P D+ V +L + + + G ++ KPF + +R L Sbjct: 69 LCRQLKKDPSTQDIPVIFLSALDHVQDKVRAFQIGGVDYIQKPFEVMEVLARVRTHAGLV 128 Query: 119 QMQKSK-DENQFLD 131 +Q++ ++N+ L Sbjct: 129 TLQRALIEQNEQLK 142 >gi|330863190|emb|CBX73317.1| signal transduction histidine-protein kinase baeS [Yersinia enterocolitica W22703] Length = 670 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + ++ G+ T+ E + P +++D + G + Sbjct: 474 TVLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSP-PAIILLDLMLPGSDGI 532 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +DV + + + + + G GA+ ++ KP++ + ++ + + Sbjct: 533 SICREIR---RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 589 Query: 121 QKSKDEN 127 + + E Sbjct: 590 CQQQREQ 596 >gi|329924374|ref|ZP_08279491.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328940725|gb|EGG37042.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 1021 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 LL+VD + +V + + V ATS EA + + ++ D M + E Sbjct: 698 LLIVDDDPVNLQVLEAILPPDEYEVTMATSGKEALAVLDA-KAWDLVISDIMMPQMSGYE 756 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ T++ V L + + +G AGAN ++ KP +R + L ++ Sbjct: 757 LTRRIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPVEALEIRSRIEALTTIK 816 Query: 122 KSKDENQFLDA 132 ++ E L+A Sbjct: 817 RTVREQLRLEA 827 >gi|317477826|ref|ZP_07937013.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316906025|gb|EFV27792.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 1347 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 4/129 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + + + + F + A++ EA + EL+P+ +V D M + Sbjct: 1102 LIVDDNEDLVAFMKDSLSLY-FRIQSASNGREAWQKI-SELMPDIIVSDVMMPEMDGNEL 1159 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+ +D+ + L E + G GA+ ++ KPFN E L MR+L + K Sbjct: 1160 CRWVKTDKRTSDIPMILLTARQAVEDKVEGLTIGADDYVTKPFNVEILILRMRKLIDLSK 1219 Query: 123 SKDENQFLD 131 + +D Sbjct: 1220 KRKAKSLID 1228 >gi|313114522|ref|ZP_07800036.1| putative KDP operon transcriptional regulatory protein KdpE [Faecalibacterium cf. prausnitzii KLE1255] gi|310623145|gb|EFQ06586.1| putative KDP operon transcriptional regulatory protein KdpE [Faecalibacterium cf. prausnitzii KLE1255] Length = 236 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + G+ A++ A P+ +++D + Sbjct: 1 MNKPSILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I +R + +++ + L + I GA+ +L KPF+ + L +R Sbjct: 60 IDG-IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQ 118 Query: 119 QMQKSKDEN 127 + + Sbjct: 119 RRLNLLASD 127 >gi|303258341|ref|ZP_07344344.1| DNA-binding response regulator ColR [Burkholderiales bacterium 1_1_47] gi|330999877|ref|ZP_08323578.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|302858787|gb|EFL81875.1| DNA-binding response regulator ColR [Burkholderiales bacterium 1_1_47] gi|329573562|gb|EGG55164.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + +R + +A + +V+D + G+ Sbjct: 1 MPTILIVEDNEDIRLNLVEYLESKNYQTDNTDDGLKALALTIVNKY-DLIVLDIMIPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G + L + + I G GA+ +++KPF+ L ++ + Sbjct: 60 GLRLCRELRSR--GNTTPIIILSAKDSTDDRIMGLSEGADDYIVKPFSLAELLLRIQAVL 117 Query: 119 QMQKSKDE 126 + + +E Sbjct: 118 RRSSTPEE 125 >gi|298383847|ref|ZP_06993408.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298263451|gb|EFI06314.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1433 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 +L+++ + +R+ + + G F V A E + ++ D M G+ Sbjct: 1172 RKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKART-YDADLIICDVLMPGM 1227 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++ + + + L EK + G AGA++++ KPF+ + L + L Sbjct: 1228 TGFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1287 Query: 118 PQMQKSKDE 126 + + E Sbjct: 1288 IEQRDKLRE 1296 >gi|294979306|pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp gi|294979307|pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp Length = 459 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + V A A ++ LP+ +++D M G+ F Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-LPDIILLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + I G +GA+ FL KP + L +R L + Sbjct: 63 TVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 122 Query: 121 QKSKDENQFLDA 132 + DE + +A Sbjct: 123 KLVIDELRQREA 134 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 43/125 (34%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + + +A + ++++ + + Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA--KISAGGPVDLVIVNAAAKNFDGL 211 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +R + V ++ D +M+ G N L +P + + L ++ Q Sbjct: 212 RFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271 Query: 121 QKSKD 125 ++ D Sbjct: 272 KRYTD 276 >gi|291534308|emb|CBL07420.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291538051|emb|CBL11162.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 235 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R + V++A E E E + ++D M + Sbjct: 5 NILIVEDDKEIRDGIEIFLKSQNYNVYKAADGIEGLEIIES-KEIHLAIVDIMMPRMDGV 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D V L + + + G GA+ ++ KPF L + + Sbjct: 64 TMTLKLRE-HHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQIRR 120 >gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Pediococcus acidilactici 7_4] gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Pediococcus acidilactici 7_4] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A + EA + +++D M + Sbjct: 1 MK-ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR++ +++ + L + D I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-QVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRR 118 Query: 121 QK 122 + Sbjct: 119 SE 120 >gi|264676273|ref|YP_003276179.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533391|ref|ZP_07046773.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262206785|gb|ACY30883.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718597|gb|EFI59572.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 249 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + V G + A EA + ++L P+ +++D + V Sbjct: 22 VLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSF-RQLRPDLVLLDIHLPKVDGV- 79 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R + +DV V + D + R GA+ +++KPFN + +R + + ++ Sbjct: 80 DVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQA 139 Query: 124 K 124 K Sbjct: 140 K 140 >gi|253570047|ref|ZP_04847456.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840428|gb|EES68510.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1433 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 +L+++ + +R+ + + G F V A E + ++ D M G+ Sbjct: 1172 RKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKART-YDADLIICDVLMPGM 1227 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++ + + + L EK + G AGA++++ KPF+ + L + L Sbjct: 1228 TGFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1287 Query: 118 PQMQKSKDE 126 + + E Sbjct: 1288 IEQRDKLRE 1296 >gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ +R + F V EA + + EK + V+D + G+ Sbjct: 1 MRRILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEK-FSIDLAVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L I G GA+ +++KPFN L ++ + Sbjct: 60 GFKVCDELRKR--YPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAIL 117 Query: 119 QMQKSKDE 126 + + E Sbjct: 118 RRTADESE 125 >gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium vitis S4] gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium vitis S4] Length = 227 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + R+ G+ V EA E +E +P+ L++D + G + Sbjct: 4 KIAVVEDEEALSVLLRYNLESEGYEVETILRGDEA-ELRLQERVPDLLILDWMLPGVSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L ++ + + Sbjct: 63 ELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 121 QKSK 124 K + Sbjct: 123 AKPE 126 >gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC 15579] gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + K L GF V A + EA + +ID S+ Sbjct: 1 MKRIFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAAL-AGNKFDLALIDISLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++ D+ V +L D ++ G GA+ ++ KPF L +R Sbjct: 60 GFTVCTEIKE---TQDLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTAL 116 Query: 119 QM 120 + Sbjct: 117 RK 118 >gi|168181983|ref|ZP_02616647.1| aspartate aminotransferase [Clostridium botulinum Bf] gi|237796826|ref|YP_002864378.1| response regulator [Clostridium botulinum Ba4 str. 657] gi|182674789|gb|EDT86750.1| aspartate aminotransferase [Clostridium botulinum Bf] gi|229262727|gb|ACQ53760.1| response regulator [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + K L GF V A + EA + +ID S+ Sbjct: 1 MKRIFLVEDDKAITKNLILLLRSEGFTVTHAPTRSEALAALVGNK-FDLALIDISLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++ D+ V +L D ++ G GA+ ++ KPF L +R Sbjct: 60 GFTVCTEIKE---TQDIPVIFLTASGDEASVVTGLNIGADDYITKPFRPRELIARIRSAL 116 Query: 119 QM 120 + Sbjct: 117 RK 118 >gi|160945542|ref|ZP_02092768.1| hypothetical protein FAEPRAM212_03071 [Faecalibacterium prausnitzii M21/2] gi|158443273|gb|EDP20278.1| hypothetical protein FAEPRAM212_03071 [Faecalibacterium prausnitzii M21/2] Length = 236 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + G+ A++ A P+ +++D + Sbjct: 1 MNKPSILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I +R + +++ + L + I GA+ +L KPF+ + L +R Sbjct: 60 IDG-IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQ 118 Query: 119 QMQKSKDEN 127 + + Sbjct: 119 RRLNLLASD 127 >gi|29349586|ref|NP_813089.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341496|gb|AAO79283.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1433 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 +L+++ + +R+ + + G F V A E + ++ D M G+ Sbjct: 1172 RKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKART-YDADLIICDVLMPGM 1227 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++ + + + L EK + G AGA++++ KPF+ + L + L Sbjct: 1228 TGFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1287 Query: 118 PQMQKSKDE 126 + + E Sbjct: 1288 IEQRDKLRE 1296 >gi|323171898|gb|EFZ57542.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli LT-68] Length = 461 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD VR++ F GF A + A ++ P+ +++D M + Sbjct: 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A T V + + E + R GA +++KPF+ + L ++ Q+Q Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 122 KSKDE 126 K E Sbjct: 124 SMKKE 128 >gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 237 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ V + GF V A + E + + L++D + + Sbjct: 7 KILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANK-FDLLILDIMLPEMNGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR T V + +L E + G +GA+ +L KPF L ++ L + Sbjct: 66 EICKAVR--EENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRR 123 Query: 121 QKSKDEN 127 ++ + N Sbjct: 124 SRNFNSN 130 >gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 235 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL++ + + + GF V A+ + + + P+ +++D + L Sbjct: 5 KVLLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQA-MTPDLVILDLMLPVIDGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + I G GA+ ++ KPF + L ++ L + Sbjct: 64 EVCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKALLRR 123 Query: 121 QKSKDENQ 128 ++ ++++ Sbjct: 124 SQAGEQSR 131 >gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 268 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 Query: 121 QK 122 + Sbjct: 158 PR 159 >gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] Length = 223 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L + +R+V GF V EA ++ + + +++D M G+ Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDY-DVVILDIMMPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V L + G AGA+ +L KPF L +R L + Sbjct: 61 TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118 >gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme DSM 15981] gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme DSM 15981] Length = 243 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + GF A S EA + + +++D M GV + Sbjct: 15 KVLIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALA-QNRKFDLILLDIMMNGVDDG 73 Query: 63 IAHVRQMPL-GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + G D+ + L + + G GA+ ++ KPFN L ++ L + Sbjct: 74 FDAIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRN 133 Query: 122 KSKD 125 K Sbjct: 134 KKAA 137 >gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM 7454] gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM 7454] Length = 233 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 10/137 (7%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +++VD + + + GF V +A + +A + E E + +++D + Sbjct: 1 MKKMNDKIIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALDLVESEN-FDLMILDIML 59 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 E + F +R+ + L +D I G GA+ ++ KPFN + + Sbjct: 60 EDMDGFSVCKKIREKHYF---PIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARV 116 Query: 115 RELPQMQKSKDENQFLD 131 + + + ++ + + Sbjct: 117 KTQLRRSQKYNKTEKIQ 133 >gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20] gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K G+ V + + + +++D + + Sbjct: 1 MSKVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNY-DVILLDLMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + ++G GA+ +L+KPF E L +R L + Sbjct: 60 GLEVARRLRES-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118 Query: 121 QKSKDE 126 + E Sbjct: 119 IAIETE 124 >gi|58583493|ref|YP_202509.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428087|gb|AAW77124.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 281 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 50 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 108 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + +S Sbjct: 109 AARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQS 168 Query: 124 KDEN 127 +E Sbjct: 169 SNEQ 172 >gi|68565392|sp|Q44929|GTCR_ANEMI RecName: Full=Response regulator gtcR gi|468745|emb|CAA55264.1| gtcR [Brevibacillus brevis] Length = 242 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ D + ++ + + + EA +A + + + + +ID M + Sbjct: 3 KTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPV-DLAIIDIMMPALDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++++ + V L + I G GA+ F+ KPFN ++ + Sbjct: 62 F-QLIKRLTNEYKLPVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQLRR 119 >gi|302875981|ref|YP_003844614.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307686697|ref|ZP_07629143.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578838|gb|ADL52850.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + +R++ L G+ V EA +A + + +++D M Sbjct: 1 MRNILIADDNDEIREIVGVLLESEGYNVIEAVDGEDAINKV--DGSIDLIILDVVMPKKT 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A + + + +L + AG++ +L KPF+ L ++ L + Sbjct: 59 GFKACIEIREKTSA-PILFLTAKSQDSDKCMAFSAGSDDYLSKPFSYTELVSRVKALLRR 117 Query: 121 QKSKDENQFLD 131 + +D Sbjct: 118 YYVYKGKETID 128 >gi|254785354|ref|YP_003072783.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237685987|gb|ACR13251.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 563 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD R++ + D G EA +A E ++ N +++D +M + Sbjct: 1 MK-ILVVDDYPQNRELLLMILEDEGHSCVEAADGIQACELFRADMDINLILMDVNMPLMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++Q V + ++ + E ++ AG + F+ KP N L + Sbjct: 60 GITATRVIKQESEERFVPIIFVTALDNTEILVRCLDAGGDDFVPKPVNETVLMAKIDAHA 119 Query: 119 QMQ 121 + Q Sbjct: 120 RAQ 122 >gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3] gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|254419790|ref|ZP_05033514.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196185967|gb|EDX80943.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 238 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+VD +R + GF +A A + + +V+D ++ Sbjct: 10 LLVVDDDRDIRNLLSEHLEQHGFRTVKAADGR-AMRAALEAGPVDLVVLDLNLPDEDGLS 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V L D I G GA+ ++ KPF L +R + + Sbjct: 69 LCRAIRA---TSRTPVIMLTARGDPIDRIVGLEMGADDYMAKPFEPRELVARIRTVLRR 124 >gi|154507667|ref|ZP_02043309.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC 17982] gi|153797301|gb|EDN79721.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC 17982] Length = 225 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + + G+ V + EA + +V+D + + Sbjct: 1 MTTVLLVEDDPAISEPLARALGREGYDVRAHATGAEALADVRG---VDLVVLDLGLPDMD 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V + L D M+ G AGA+ ++ KPF L +R L + Sbjct: 58 GLDVAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117 Query: 121 QKSK 124 Q ++ Sbjct: 118 QAAE 121 >gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814] gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814] Length = 231 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + + G+ V +A EA + +K + + L+ID M + Sbjct: 1 MYNILVCDDDKEIVEAIEIYLSQEGYKVLKAYDGEEALKLLDKHKV-DLLIIDVMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRATLKIREK-QNMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLRR 118 Query: 121 QKS-----KDENQ 128 + ENQ Sbjct: 119 YTQLGSTVEKENQ 131 >gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 224 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + +D G++V A E + + +V+D + + Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEG-HYLGDSEPYDAVVLDIGLPKMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + V L + + G AGA+ ++ KPF+ E + +R L + Sbjct: 61 SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 123 SKDENQF 129 +++ Sbjct: 121 GHAQSEL 127 >gi|45934807|gb|AAS79471.1| putative two-component system response regulator [Streptomyces bikiniensis] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ ++R+ +G+ V A E +E + +++D + G + Sbjct: 2 TVLLVEDDEVIRRSVAMSLERYGYRVRVAADGLTGLELF-REGRHDLVLLDVMLPGLDGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + D +++G AGA+ +++KP + L +R L + Sbjct: 61 GLCRRIRETATD---PILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRR 117 >gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea MMB-1] gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea MMB-1] Length = 2241 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + +V + G M+ A + +A E +E+ + +++D M + Sbjct: 1905 KRVLLVEDNELNSRVVLGYLEESGVMLDMAENGQQALEKV-QEVHYDVVLMDLQMPIMDG 1963 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + + + E AG N ++ KP + + L M+ Sbjct: 1964 ITATRKIRAVFDEKTLPIVAMTAHASVEDKQRCLEAGMNDYITKPVDIDELYGVMKRHM 2022 Score = 67.1 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 6/118 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58 +L+VD S+I R+ ++ + G + + EA E + L+++ + G Sbjct: 1760 RVLVVDDSNIARRAIVYMLKEIGVQCDDVGAPIEALECIREGNGASTNYDVLLMERYLAG 1819 Query: 59 VL--EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 V + I +++ ++ + D EK + + L KP + +LR A+ Sbjct: 1820 VDCLDTIRKIKKESSNKNLTSIIVSSFSDEEKQLLSVDRDIDDVLDKPVDLSSLRQAL 1877 >gi|299069602|emb|CBJ40874.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum CMR15] Length = 245 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R + GF V + + P +V+D M V Sbjct: 4 TKILVVDDDVELRDLLREYLSQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A DV V L D I G GA+ +L KPF+ L + + + + Sbjct: 63 LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122 Query: 122 KS 123 ++ Sbjct: 123 QA 124 >gi|262173309|ref|ZP_06040986.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus MB-451] gi|261890667|gb|EEY36654.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus MB-451] Length = 376 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 8/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + R + L + + ATS +A C K+ P+ +++D M + Sbjct: 6 TILIVDDNPENRALLAGLLKPH-YRLLVATSGAQALTICHKQK-PDLVLLDIMMPEMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + P D+ V +L + E G GA ++ KP + L R ++ Sbjct: 64 EVCQRMGADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLRL 123 Query: 121 QKS----KDENQFLD 131 +++ ++N+ L+ Sbjct: 124 RQAMKLLAEQNETLE 138 >gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L +D + V + G+ VF T+ A K L P+ +++D + G+ Sbjct: 1 MK-ILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTF-KSLKPDLVILDLMLPGLS 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + V + L +V+ + + G GA+ +L KPF+ L ++ + Sbjct: 59 GEEICSKIRAISK---VPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAIL 115 Query: 119 QMQK 122 + K Sbjct: 116 RRTK 119 >gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R GF V EAT+ EA + ++ + + ++D + G+ Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GLEVCKAIRK--ENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 120 Query: 119 QMQKSKDE 126 + + +E Sbjct: 121 RRIEVHEE 128 >gi|126660463|ref|ZP_01731572.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] gi|126618276|gb|EAZ89036.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] Length = 608 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + +V + G+ V +AT A K L P+ +++D M + Sbjct: 26 ILIVDDTIENLRVLSSILTAQGYNVRKATGGHMAL-KVVKTLPPDLIMLDIMMADLNGYD 84 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q P D+ V +L D + G ++ KPF E + ++ ++ Sbjct: 85 VCEQLKQNPRTADIPVIFLSALDDVFDKVKAFEMGGVDYICKPFQMEEVLVRVKNQLALR 144 Query: 122 KSKDENQFLD 131 ++ E L+ Sbjct: 145 TAQKEVYQLN 154 >gi|118580077|ref|YP_901327.1| two component sigma54 specific Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502787|gb|ABK99269.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 462 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 2/133 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R+ L G+ A +A + L + ++ D M G+ Sbjct: 1 MKTRILIVDDELSMREFLSILLEGEGYETVVAAHAEQALSLLDSG-LFDLVISDVQMPGL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + V + E+ + + GA ++ KPF E ++ +R + Sbjct: 60 DGIELLSRIKTVSPGTAVLMMTAYCAAEQAVEAMKLGAYDYISKPFKVEEIKVLIRNALE 119 Query: 120 MQKSKDENQFLDA 132 K EN L Sbjct: 120 KCDLKRENSVLKE 132 >gi|87119492|ref|ZP_01075389.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Marinomonas sp. MED121] gi|86164968|gb|EAQ66236.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Marinomonas sp. MED121] Length = 560 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD R + G+ EA + A E K + +++D M + Sbjct: 4 KILIVDDYEDNRYTLKRRLKRDGYKECDEAENGQIALEMMSK-KQYDLILLDLMMPIMDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + H++ + V + D EK+ G GA +L KPFN L+ ++ + Sbjct: 63 FEVLEHMKLKDEFRHLPVIMISAADDLEKIAQGIALGAEDYLPKPFNPIILKARVKSALE 122 Query: 120 -MQKSKDENQFL 130 +S D+ L Sbjct: 123 KRSRSLDQINAL 134 >gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] Length = 1406 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E E E+ + +++D M + Sbjct: 1285 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDLSVVLMDIMMPEMDG 1344 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1345 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWMR 1404 >gi|237726037|ref|ZP_04556518.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435845|gb|EEO45922.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1408 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + ++ + V EA+ EA + + + +++V D M + Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E I R G + +LLKPF+ L + + + Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272 Query: 121 QKSKDE 126 +K + Sbjct: 1273 RKRFQQ 1278 >gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M G+ F Sbjct: 2 RLLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTQQTI 127 >gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05] gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05] gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] Length = 268 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 Query: 121 QK 122 + Sbjct: 158 PR 159 >gi|146300865|ref|YP_001195456.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146155283|gb|ABQ06137.1| histidine kinase [Flavobacterium johnsoniae UW101] Length = 1344 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ ++ +RK +D+ + V+EA + E + C +++ P V D M + Sbjct: 1099 KILVIEDNNELRKYLVDYLSDY-YKVYEAENGSEGLKIC-RQIKPILCVTDVMMPVMDGL 1156 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + + V L + + G GA+ +L+KPF L+ + + + Sbjct: 1157 EFCRELKNDEFISHIPVVMLTALSENMDKVKGYDTGADGYLVKPFEPLLLKTVIENMIKS 1216 Query: 121 QKSKDE 126 + + Sbjct: 1217 RLELKQ 1222 >gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17] gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G+ + AT E F + +V+D + + Sbjct: 2 RVLIVEDEPNLGQQLKATLEGAGYAIDLATDGEEG-HFLGSTESYDAIVLDLGLPEIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L + +AG AGA+ ++ KPF E L +R L + Sbjct: 61 TVLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRR 118 >gi|302548928|ref|ZP_07301270.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302466546|gb|EFL29639.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1440 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 4/134 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+VD H G V A + E E E+ + +++D M + Sbjct: 1290 RLLIVDDDIRNVFALTHALGRVGITVRYAENGREGLEVLERSPDVSLVLMDIMMPEMDGY 1349 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R P + + L + +GAN ++ KP N + L A+ +L Sbjct: 1350 ETIRTIRNTPRLAHLPIIALTAKAMPGDRDKAIDSGANDYVPKPVNIDRLLTAICDLLDP 1409 Query: 121 QK--SKDENQFLDA 132 Q + E + + A Sbjct: 1410 QHDCPEPEQERVAA 1423 >gi|299145583|ref|ZP_07038651.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298516074|gb|EFI39955.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 1330 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA KE P ++ D M + Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1120 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + ++ G GA+ +L+KPF+ + LR + L Sbjct: 1121 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180 Query: 120 MQKSKD 125 ++ Sbjct: 1181 NRELLR 1186 >gi|294806721|ref|ZP_06765549.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294446075|gb|EFG14714.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1212 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA KE P ++ D M + Sbjct: 1035 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1092 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + ++ G GA+ +L+KPF+ + LR + L Sbjct: 1093 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1152 Query: 120 MQKSKD 125 ++ Sbjct: 1153 NRELLR 1158 >gi|270291731|ref|ZP_06197947.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] gi|270279816|gb|EFA25657.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ V A E E K + ++ D M + Sbjct: 3 KTILLVDDEIDILDIQHRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + + + I G GA+ F++KPF+ L + + + Sbjct: 62 YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRRL 121 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 122 SRGGETEQIE 131 >gi|262408078|ref|ZP_06084626.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645070|ref|ZP_06722796.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|262354886|gb|EEZ03978.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639576|gb|EFF57868.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1329 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA KE P ++ D M + Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1120 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + ++ G GA+ +L+KPF+ + LR + L Sbjct: 1121 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180 Query: 120 MQKSKD 125 ++ Sbjct: 1181 NRELLR 1186 >gi|148256093|ref|YP_001240678.1| response regulator PleD [Bradyrhizobium sp. BTAi1] gi|146408266|gb|ABQ36772.1| response regulator receiver modulated diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 466 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IA 64 VD K+ + F V A++ EA + C++ + +++D M + F Sbjct: 2 VDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAEC-DIILLDVMMPDMDGFEVCR 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 ++ P + V + + G AGA+ FL KP + L +R L +++ Sbjct: 61 RLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTRLKMMT 120 Query: 125 DENQFLD 131 DE + Sbjct: 121 DELRMRA 127 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + V + EA E + +D L Sbjct: 151 RILLVDDRPSSYERLGPMLAAE-HSVDVEPNPSEAVFNAAEGNYDLVIVSLDLDDFDGLR 209 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V + + E + + G G N +LL+P ++ L R + Sbjct: 210 LCSQLRSLERTRHVPILAI-AEAENNTRLLRGLEIGVNDYLLRPVDKNELMARARTQIRK 268 Query: 121 QKSKDENQ 128 ++ D + Sbjct: 269 RRYTDHLR 276 >gi|221069624|ref|ZP_03545729.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220714647|gb|EED70015.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 249 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + V G + A EA + ++L P+ +++D + V Sbjct: 22 VLVVEDEPAIAGVLSAYLERDGLRIRMAQDGEEALQSF-RQLRPDLVLLDIHLPKVDGV- 79 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 +R + +DV V + D + R GA+ +++KPFN + +R + + ++ Sbjct: 80 DVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQA 139 Query: 124 K 124 K Sbjct: 140 K 140 >gi|58581182|ref|YP_200198.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425776|gb|AAW74813.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 777 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLV+ + GF V A A + ++ P+ +++D + Sbjct: 552 KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQ-LHRQWAPDLVLLDVMLPKLSG 610 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ +R +D V + D + + R GA+ +++KP++ + + + + + Sbjct: 611 IEVLSAIR---RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 667 Query: 120 M 120 Sbjct: 668 R 668 >gi|85706910|ref|ZP_01038000.1| response regulator [Roseovarius sp. 217] gi|85668521|gb|EAQ23392.1| response regulator [Roseovarius sp. 217] Length = 421 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD S + R++ +GF V EA S A C E P+ ++ D M G Sbjct: 15 RRVLVVDDSRLQRRILSASLQRWGFEVQEADSGDAALILCRDEP-PDLVMSDWMMPGLSG 73 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 LEF R+M + + L + D +++ G AGA+ FL KP N LR + Sbjct: 74 LEFCKRFREMSRDSYGYFILLTSKSDKDEVALGLDAGADDFLTKPVNAAELRARISAGAR 133 Query: 117 LPQMQKSKDENQFL 130 + +M++ E L Sbjct: 134 ILRMERELTEKNRL 147 >gi|332882289|ref|ZP_08449917.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679673|gb|EGJ52642.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1362 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLE 61 +L+V+ +R+ F + V E ++ EA ++ + + +V D M + Sbjct: 1092 RILVVEDETTIRRYLHGEFAGE-YHVSECSNGQEAWDYLIQNVEKVDLVVSDVMMPVMDG 1150 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + V L + + + G GA++++ KPFN + LR L + Sbjct: 1151 ITLCRKIKGSFNTNHIPVILLTAKSEDADRLEGLSTGADAYMSKPFNIDILRQTAENLLK 1210 Query: 120 MQKSKD 125 ++ Sbjct: 1211 NKRRLQ 1216 >gi|330878943|gb|EGH13092.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 254 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R F V A + ++ + +V+D + F Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQP-FDVVVLDVMLPDGDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R ++ V L + G GA+ +L KPF L + + + + Sbjct: 71 ELCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128 >gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum] Length = 1361 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 5/119 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LL + + + +++ L FG V A + +A + + +++D M + F Sbjct: 1131 ILLAEDNIVNQRLAVRLLERFGHRVTLAENGLQAV-AASETKDFDLILMDVQMPHMSGFE 1189 Query: 64 A----HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R+ L + + + AG + +L KP N + LR + + Sbjct: 1190 ATNTIRIREKALNKHTPIIAMTAHALQKDREKCLEAGMDDYLSKPINADQLRSQIEKFL 1248 Score = 68.7 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 14/121 (11%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEGVL 60 L++D + RKV + ++G A S A ++ + +D + G Sbjct: 984 LIIDDNKTTRKVLLQMLGEYGISADSADSAETAFRLLRAASLRKHPYECIFMDAQLNGRD 1043 Query: 61 EFI--AHVRQMPLGTDVFVYYL---LM-EVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 F+ ++Q D ++ + D E + + +L KP + + A+ Sbjct: 1044 GFLVAEAIKQDTTIGDASIFMMICGSGQRGDPENRSSVI----SGYLTKPISPLEMLEAL 1099 Query: 115 R 115 + Sbjct: 1100 Q 1100 >gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ ++ + R GF V A + + +++D + L Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPY-DLVLLDLGLPRRDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R G + V + + G AGA+ +L+KPF+ + L MR L + Sbjct: 61 DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 Query: 121 QKSKD 125 Q + Sbjct: 119 QSGRS 123 >gi|300022943|ref|YP_003755554.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299524764|gb|ADJ23233.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 881 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD +R+ + + V EA A E P+ +++D + G LE Sbjct: 495 LLVVDDEPDMRRYLVTML-RETYRVIEAEDGISALEKARAAH-PDLILLDVMLPGVSGLE 552 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + L D E I + GA+ FL+KPF+ +R + + Sbjct: 553 VCRSLKERTETRAIKIIVLTARADEEAKIVALKNGADDFLIKPFSGIEVRSRIANFIRAA 612 Query: 122 KSKDENQF 129 + + + Q Sbjct: 613 QLERDLQR 620 >gi|241888541|ref|ZP_04775849.1| response regulator SaeR [Gemella haemolysans ATCC 10379] gi|241864808|gb|EER69182.1| response regulator SaeR [Gemella haemolysans ATCC 10379] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + ++ + G+ + A EA E ++ + ++ D M + Sbjct: 2 MNKILLVDDEIEITEINKRYLEQGGYDIDIANDGKEALEKYKRNKY-SLIITDIMMPNMD 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + L T+ ++ + I GA+ +++KPF+ L +R + + Sbjct: 61 GYDLISEVQYLDTEQPFLFITAKTTEPDKIYALSMGADDYIVKPFSPRELVLRVRNILRR 120 Query: 121 QK 122 + Sbjct: 121 IE 122 >gi|160933152|ref|ZP_02080541.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753] gi|156868226|gb|EDO61598.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 47/122 (38%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + R + A + A P+ +++D + + Sbjct: 5 KVLVVEDDAAISNLIRTTLETQEYQYHTAQNGSGALMEVVS-YHPDVVILDLGLPDMDGV 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ + + + + + + + AGA+ +L KPF+ + +R + Sbjct: 64 -DIIKKIRSFSTMPIIVVSARTEDQDKVDALDAGADDYLTKPFSIDEFLARLRVALRRSH 122 Query: 123 SK 124 ++ Sbjct: 123 TE 124 >gi|156936560|ref|YP_001440474.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC BAA-894] gi|156534814|gb|ABU79638.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC BAA-894] Length = 230 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ V + V A E ++ P+ +++D + + Sbjct: 4 KRVLVIEDDADAASVLEAYLRRENYDVAIAGDGRSGLEKAQR-WKPDLVLLDVMLPVMNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +A +R +DV V + D I R GA+ +++KP++ + ++ + + Sbjct: 63 TEVLATLR---RSSDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|51473435|ref|YP_067192.1| response regulator PleD [Rickettsia typhi str. Wilmington] gi|51459747|gb|AAU03710.1| response regulator protein [Rickettsia typhi str. Wilmington] Length = 450 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALSILKKEK-IDTILLDVMMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ P T + V + D + + G AGA+ FL+KP N L ++ L Sbjct: 60 GFEVCKIIKTDPGTTHIPVVMITALSDIDDRVKGLEAGADEFLIKPINDTALFVRLKSLS 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 58.7 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 47/129 (36%), Gaps = 4/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P+ ++I ++E Sbjct: 152 KKILLINDDVVQAKNIKQILVKLTKYVKVISNSDE-LDII-NEYTPDLVIISSTLENEDP 209 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + + E ++ G G N + + P L +R + Sbjct: 210 LRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFIYPIEENELLARIRTQLR 269 Query: 120 MQKSKDENQ 128 ++ +D + Sbjct: 270 RKQYQDNLR 278 >gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51] gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + +F+ + +A + EKE L + ++D + V F Sbjct: 4 NILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKL-DLAILDVMLPDVDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V L + + I G GA+ ++ KPF L ++ + Sbjct: 63 SICRQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRR 119 >gi|329962431|ref|ZP_08300431.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328529987|gb|EGF56875.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1484 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62 LLV+ + +R R +F + + EA + K LP+ +V D M + Sbjct: 1222 LLVEDNSELRLFLRSIFAPE-YRIVEAADGMQGWSKALK-FLPDIIVSDVMMPEKDGISM 1279 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121 + +R + + + L + E + G GA+ ++ KPF+ L+ +R L Q Q Sbjct: 1280 MRELRADMTTSHIPIVLLTAKTSIESKLEGLEYGADDYITKPFSATYLKARVRNLLVQRQ 1339 Query: 122 KSKD 125 K ++ Sbjct: 1340 KLQE 1343 >gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLKLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 7/122 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---- 58 +L+V+ + V R + G+ A A E E E + +V+D + G Sbjct: 2 RILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETY-DLVVLDLMLPGIAGG 60 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R+ +DV + L + + G AGA+ +L+KPF+ L +R L Sbjct: 61 GMEVCRVMRRHS--SDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALM 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + + GF V + E + KE + +++D + G Sbjct: 1 MCRVLIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDW-DIILLDLMLPGLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + + L ++G +GA+ ++ KPF E L +R L Sbjct: 60 GMEVCRRIRA---AKETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALF 116 Query: 119 QMQKSKDEN 127 + + K E Sbjct: 117 RRMEGKKEE 125 >gi|309775020|ref|ZP_07670035.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium 3_1_53] gi|308917238|gb|EFP62963.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD +R + R G + EA +A E C K+ + +++D M + Sbjct: 1 MSRLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKC-KQAAYDLIIMDIMMPNLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + V+++ V L + I G G + +++KPF+ + L + + + Sbjct: 60 GF-SAVKEIRKDASTPVIMLSARGEEYDRIHGFEIGIDDYVVKPFSPKELMMRVSAILKR 118 Query: 121 QK 122 Sbjct: 119 YH 120 >gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR [Turicibacter sanguinis PC909] gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp. HGF1] gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR [Turicibacter sanguinis PC909] gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp. HGF1] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + ++ ND G++V++A++ EAR + P+ +++D M G Sbjct: 3 QKILVVDDDLEILEMLYDALNDEGYLVYKASNSFEARSQLKVN--PDLMILDVMMPGQDG 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 EF +R + + +L +V +I G G + +L KPF+ LR + + Sbjct: 61 FEFCKEIRSV---VSCPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLRELRARVAAHLR 117 Query: 120 M--QKSKDENQFL 130 ++S E FL Sbjct: 118 RNERQSSREQSFL 130 >gi|218437187|ref|YP_002375516.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218169915|gb|ACK68648.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 322 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD ++ + ++ G+ A S +A E + P+ +++D M + Sbjct: 18 ILIVDDISKNLQLVVEILDEVGYATTFAISGKQALERVKIAH-PDLILLDLMMPEMNGLQ 76 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ + +L + E ++ + GA ++ KPF L ++ +++ Sbjct: 77 VCEKLKSDANYAEIPIIFLTASDEQEDLLQAFKMGAVDYVTKPFKSGELLARVKTHLELK 136 Query: 122 KSKDENQF 129 ++KD + Sbjct: 137 RTKDALKM 144 >gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 235 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + GF+V A A + + P+ +++D + G+ Sbjct: 5 TILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALA-RSVKPDLVILDIMLPGLDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQ+ T V+V L D + G GA+ +L KPF+ L ++ + + + Sbjct: 64 EVC-RQLHRETTVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNR 122 Query: 123 SKD 125 + Sbjct: 123 AAR 125 >gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D K+ + + G+ V +A + E + P+ +++D M + Sbjct: 3 ILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSILQSVE-QYNPDLILLDVMMPKTNGFD 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +DV + +L + + G + G + +L+KPF L + + + + Sbjct: 62 VCRQIR---RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRR 118 Query: 122 KS 123 S Sbjct: 119 NS 120 >gi|86146655|ref|ZP_01064976.1| probable transcriptional regulator SyrB [Vibrio sp. MED222] gi|85835502|gb|EAQ53639.1| probable transcriptional regulator SyrB [Vibrio sp. MED222] Length = 221 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + G+ V A EF + + + +++D + + Sbjct: 1 MSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSNPV-DLVLLDVMLPNLS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I R++ + L D M+ G +AGA+ ++ KPFN L ++ + + Sbjct: 60 G-IQVARRICQRFATPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 118 Query: 121 QKSKDENQFLDA 132 + + Q + + Sbjct: 119 VGFERQRQSMAS 130 >gi|323463385|gb|ADX75538.1| two-component response regulator SaeR [Staphylococcus pseudintermedius ED99] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ + F G+ V A++ EA + + +VID M + Sbjct: 1 MTHILIVDDEQDIREICKTYFEYEGYHVSTASNGKEALDLLNTN--VDVMVIDIMMPEMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D+ YL + + I G GA+ ++ KPF+ L ++ L Sbjct: 59 GYEVVREMKNQGLDIPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNR 118 >gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726] gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 268 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 Query: 121 QK 122 + Sbjct: 158 PR 159 >gi|253700815|ref|YP_003022004.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251775665|gb|ACT18246.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 452 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD S K+ L G+ V A + +A E E P+ ++ D M + F Sbjct: 14 ILIVDDSPTQAKLLEQLLAGEGYRVAVARNGSDALEQI-NERRPDMVISDILMPEMDGFE 72 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+M + + L D ++ AGAN F+ KP++ + L +R + Q + Sbjct: 73 LCRRVREMESIKETPIVLLTHLNDPSDVLHSLEAGANYFVSKPYSDKLLLNRIRAILQGE 132 Query: 122 KS 123 ++ Sbjct: 133 RA 134 >gi|188591971|ref|YP_001796569.1| multi-site sensor histidine kinase [Cupriavidus taiwanensis LMG 19424] gi|170938345|emb|CAP63330.1| putative multi-site Sensor histidine kinase [Cupriavidus taiwanensis LMG 19424] Length = 1478 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 4/133 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D + +R R L + G V A EA + P +V D M Sbjct: 673 VLVADDNDDLRDYMRRLLSAAGHRVVVAADG-EAALAQARAHAPALVVSDVMMPRLDGFG 731 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + V L E ++G +GA+ +L+KPF+ L + ++ Sbjct: 732 LLRALRADAELRETPVLLLSARAGEEARVSGLGSGADDYLVKPFSARELLARVASNLRLS 791 Query: 122 KSKD-ENQFLDAI 133 + + + L + Sbjct: 792 ELRRATERRLQEL 804 Score = 91.8 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 7/126 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 ++L+V+ VR + G+ V A A E+ + + L D M G L Sbjct: 1198 TVLVVEDDEDVRATVVEMLASLGYHVLRARDAHSALAIVERGVPVDLLFSDVVMPGPLRS 1257 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118 E +R DV V + D + G AG L KP+ E L +R + Sbjct: 1258 TELARKLR--ERLPDVGVLFTSGYADSVIVHDGRLDAGI-ELLSKPYTHEALARKVRHVL 1314 Query: 119 QMQKSK 124 + + Sbjct: 1315 ANRGQR 1320 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 3/112 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L VD +VR + +G EA S A + + L+ D ++ G Sbjct: 1344 VLCVDDDALVRAGTAEVLRAYGLHALEADSEAAALAML-AGNVVDVLLTDVALAGDSGVE 1402 Query: 64 AHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + + V + D GA + L KP+ + L + Sbjct: 1403 LALAARARHPGLGVVFATGYALDLTPAQRA-GLGAVAVLRKPYPPQRLLEVL 1453 >gi|209550745|ref|YP_002282662.1| Fis family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536501|gb|ACI56436.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 444 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD +R+ GF V ++ E P +V D M G+ Sbjct: 5 KILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYS-FPGVVVSDIRMPGMDGM 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + L +V V + D + + R GA F+ KPF E L +R + + Sbjct: 64 TLMQKIRELDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAMERRG 123 Query: 123 SKDENQFLDAI 133 EN+ L A+ Sbjct: 124 LVLENRLLKAV 134 >gi|147678593|ref|YP_001212808.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274690|dbj|BAF60439.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 453 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD VR++ + + D G V A + EA E P+ +++D M + Sbjct: 2 MSKVLVVDDEESVRQMLKDVLEDDGHQVMLAENGREALEKI-TVRHPDAVLLDIRMPEID 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G+ V + + + I + GA +++KPFN + L +++ M Sbjct: 61 GLAVLDIVRREGSTVPIILMTAFGITDMAIQAIQTGAYDYIIKPFNIDELLLTVKKAVNM 120 Query: 121 QKSKDENQFL 130 Q E L Sbjct: 121 QDLVTEVAAL 130 >gi|94264346|ref|ZP_01288138.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455240|gb|EAT05453.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 257 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL +D + KV + G+ + ATS+ EAR +E P+ +++D + Sbjct: 33 TLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRL-QETPPDLVILDLMLPDGDGL 91 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + L + V L + G GA+ +++KPF L ++ + Sbjct: 92 EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLR 148 >gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1079 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 12/136 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + V R + G A + EA + +E + +++D M + Sbjct: 821 RILIVEDNPTNQMVARAVLKKLGLTNSTVANNGREALDILAREN-FDLVLMDCRMPEMDG 879 Query: 62 FIAHVRQMP-----LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 F A R V + + +AG + +L KP + L + Sbjct: 880 FEATRRIREGKNSVQNPQVPIVAMTAHAMKGDREKCIQAGMSDYLSKPVQPQELEEIINR 939 Query: 117 LPQ-----MQKSKDEN 127 + ++ ++ E+ Sbjct: 940 QLRPAQGGLKNARQED 955 >gi|291568215|dbj|BAI90487.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 394 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD ++ + + G+ V +A + A + E E P+ +++D M + Sbjct: 13 ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAET-PDLILLDIMMPELDGYQ 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118 +++ P ++ + +L D + G ++ KPF+ + + +R Sbjct: 72 VAKYLKDDPTTREIPIIFLSALSDTMDKVLAFDLGGVDYITKPFHVQEVLARVRTQLTIS 131 Query: 119 -QMQKSKDENQFLD 131 Q Q+ +N L+ Sbjct: 132 QQKQQLITQNHELE 145 >gi|260460551|ref|ZP_05808802.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259033656|gb|EEW34916.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 230 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ R G+ + EA + A E E E P+ +++D + G+ Sbjct: 7 RILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMETEK-PDLVLLDLGLPGMSGH 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ V L D ++ GA+ ++ KPF L +R + + Sbjct: 66 ELLRKWRDDGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKF 125 Query: 123 SKD 125 + Sbjct: 126 QQQ 128 >gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + ++ GF ++ + +++D + G LE Sbjct: 5 ILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPA-DLVILDIGLPDIGGLE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + V + +L D I G GA+ ++ KPF+ + ++ + + Sbjct: 64 LCRLIRQ---TSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRR 119 >gi|167755291|ref|ZP_02427418.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402] gi|167704230|gb|EDS18809.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402] Length = 228 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+V+ + ++ + +D G+ A A E E + +++D + Sbjct: 11 MNKILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYN-QFDLILLDIMLPEIN 69 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++R + + V +L + D + + G + GA +++KPF L + + Sbjct: 70 GYELMEYIRPLE----IPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVL 125 Query: 119 QMQK 122 + Sbjct: 126 RRYH 129 >gi|154505591|ref|ZP_02042329.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149] gi|153794030|gb|EDN76450.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149] Length = 240 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+ D + + G+ V +A +A + E E + + L++D M + Sbjct: 10 MYSILVCDDDKEIVEAIEIYLTQEGYQVLKAYDGMQALKMLETETV-HLLILDVMMPRLD 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 69 GIRATLKIRETNS-IPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRR 127 >gi|295136473|ref|YP_003587149.1| two-component system sensor histidine kinase/response regulator,hybrid ('one-component system') [Zunongwangia profunda SM-A87] gi|294984488|gb|ADF54953.1| two-component system sensor histidine kinase/response regulator,hybrid ('one-component system') [Zunongwangia profunda SM-A87] Length = 1356 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D + + ++ D F + + + + K +P+ ++ D M + Sbjct: 1101 ILIIDDNPEILMYLDNILKD-DFDLIHSHDGEDGIKKAIKH-VPDLILSDVMMPKLDGIQ 1158 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + V + L + + E + +G GA+ ++ KPF+ L+ ++ L + + Sbjct: 1159 LCNQLKKHHITSHVPIILLTAKSNTESISSGFSEGADDYVTKPFHPSLLKTRIKALLENR 1218 Query: 122 KSKDE 126 K E Sbjct: 1219 KKLQE 1223 >gi|307731198|ref|YP_003908422.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585733|gb|ADN59131.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 246 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +VR + GF + E+E P+ +V+D M Sbjct: 5 VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V ++ I G GA+ +L KPF+ L + + + + Sbjct: 64 ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121 >gi|326319281|ref|YP_004236953.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376117|gb|ADX48386.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 248 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ G ++ + + +V+D + G Sbjct: 11 RILVVDDDPEIRELLCDYLRAAGLRPAAVADGEAMWQWLARHTA-DLVVLDLMLPGTDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + T + V L I G GA+ +L KPF+ L + + + + Sbjct: 70 -ALCRALRECTHIPVVMLTARGALLDRILGLEMGADDYLPKPFDPRELLARINVVLRRAR 128 Query: 123 S 123 Sbjct: 129 Q 129 >gi|260172821|ref|ZP_05759233.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2] gi|315921107|ref|ZP_07917347.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694982|gb|EFS31817.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1358 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 62/137 (45%), Gaps = 8/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+V+ + + D + V T+ EA LLPN ++ D M + + Sbjct: 1108 TILIVEDNRDLNNYICSCLADK-YNVIGVTNGEEALAKAI-NLLPNLIITDLMMPKMNGI 1165 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 E I +++ + + + + + + G AGA+ ++ KPF+ L+ + + Q Sbjct: 1166 ELIRQLKKDMNSSHIPIIMVTAKTGTNDIKEGYAAGADEYITKPFDASILKVRVDNIIQS 1225 Query: 120 MQKSKD---ENQFLDAI 133 ++ KD +N L+++ Sbjct: 1226 RERLKDLYSKNFSLESL 1242 >gi|260584875|ref|ZP_05852620.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] gi|260157532|gb|EEW92603.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] Length = 231 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 2/134 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + F + +A +A E + + +++D M + Sbjct: 1 MK-ILVVDDDREIVELLSIYLRNEKFEIVKAYDGKQALEKIQAYPDIDMVILDIMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + L + I G GA+ ++ KPFN + ++ L + Sbjct: 60 GISVVHEIRKTNDALPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRR 119 Query: 121 QKSK-DENQFLDAI 133 + E++ + I Sbjct: 120 TSALTKESESAEEI 133 >gi|288942573|ref|YP_003444813.1| response regulator receiver modulated metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] gi|288897945|gb|ADC63781.1| response regulator receiver modulated metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] Length = 356 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + + + V AT A + P+ +++D M G+ Sbjct: 7 QTILVVDDAPANIDLLVNTLKVE-YNVKAATRGERALQIVRSGDPPDMILLDIMMPGMDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +++ + V ++ ++ E I G GA ++ KP + + +R Sbjct: 66 FEVCRQLKRDFTTRHIPVIFITAKIGIEDEIRGFDLGAVDYITKPISPPVVLARVRTQL- 124 Query: 120 MQKSKDENQFL 130 D+N+ L Sbjct: 125 --ALYDQNREL 133 >gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] Length = 224 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + G+ V + + E + +++D + G Sbjct: 1 MQQILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLDAAL-EKNYDLILLDLMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + + L + G +GA+ +L KPF E L MR + Sbjct: 60 GLEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116 Query: 119 QMQKSKDE 126 + +++ ++ Sbjct: 117 RREENTEQ 124 >gi|254520861|ref|ZP_05132917.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226914610|gb|EEH99811.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + G+ V A +A + +E + +++D M + Sbjct: 5 NILVVDDDKEITEAIEIYLINEGYNVLVAYDGVQALKIAREED-IHLIIMDLMMPNLDG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ +L KPFN L + + Sbjct: 63 TRATIELRREKEIPIIMLSAKSEDSDKILGLNLGADDYLTKPFNPLELIARVNSQIRR 120 >gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ ++R+ F + V+EA A E + + +V+D M + Sbjct: 1 MKRKVLLVEDDELIREFVSDYFKKEAWEVYEAQHGKMAMELFALHSV-DLVVLDIMMPEM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +RQ +D+ + + VD + + G GA+ ++ KPF+ + L + L Sbjct: 60 DGWSVCRKIRQQ---SDIPIIIITARVDDDDQLMGFELGADEYVTKPFSPKVLVARAKAL 116 Query: 118 PQMQK 122 + + Sbjct: 117 MKRAE 121 >gi|210621484|ref|ZP_03292655.1| hypothetical protein CLOHIR_00598 [Clostridium hiranonis DSM 13275] gi|210154741|gb|EEA85747.1| hypothetical protein CLOHIR_00598 [Clostridium hiranonis DSM 13275] Length = 234 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + K+ + S EA EK+ ++ D M G+ Sbjct: 1 MKKILIADDDKELCKLLQITLKSENIDSKICFSGIEAINELEKDEYIMLIL-DVMMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + +D+ V L + D + G R GA+ ++ KPFN E + L + Sbjct: 60 GF-RTLEIVRENSDIPVLMLTAKDDTSSKVKGLRLGADDYITKPFNTEEFLARVDSLIRR 118 Query: 121 QKSKDEN 127 ++ Sbjct: 119 YNMNNKQ 125 >gi|220926141|ref|YP_002501443.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950748|gb|ACL61140.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1839 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + G V AT+ EA E+ +++D M + Sbjct: 1719 RTVLLVDDDARNIFALSSVLERRGMRVLTATTGREAISIIEERSDIAIVLMDIMMPEMDG 1778 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R P + + L + AGA+ +L KP N E L A+R Sbjct: 1779 YETMQVIRANPAFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRLWLH 1838 Query: 120 M 120 Sbjct: 1839 R 1839 Score = 96.0 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 11/127 (8%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ +V L D GF V A +A + P + +D + +L Sbjct: 1453 LLIVEDDPHYTRVLMQLARDTGFKVLTANRGADALALARR-YHPTAVSLDVFLPDMLGWT 1511 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 ++H++Q P + V + E G GA +FL KP E L ++ Sbjct: 1512 VLSHLKQDPATRHIPVQIVT---LDEDRRHGLARGAFAFLSKPTRPEDLGSALQRIKSFA 1568 Query: 119 --QMQKS 123 + ++ Sbjct: 1569 APRRRRL 1575 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+V+ + R L + A + A +E + +V+D + + Sbjct: 1573 RRLLIVEDNPAERLGVSTLLGHQDIDIVTAETGAGALAAL-REHAIDCVVLDLKLPDMSG 1631 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEV---DFEKMIAGARAGANSFLLKPF-NRETLRF 112 F + +R+ D+ V + + + A S ++K + E L Sbjct: 1632 FEVLERLREDDSLADLPVVVFTGRALSPEEDARLHAL---ARSVVVKGVESPERLLD 1685 >gi|160888170|ref|ZP_02069173.1| hypothetical protein BACUNI_00578 [Bacteroides uniformis ATCC 8492] gi|270297069|ref|ZP_06203268.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478932|ref|ZP_07938079.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156862305|gb|EDO55736.1| hypothetical protein BACUNI_00578 [Bacteroides uniformis ATCC 8492] gi|270273056|gb|EFA18919.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904909|gb|EFV26716.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 375 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + L + F + A++ +A E EKE P+ +++D M + F Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVEKEN-PDLVLLDVMMPDMSGF 69 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ P D+ + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 70 EVAQHLKSNPNTADIPIIFLTALNSTADIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129 Query: 121 QKSKD 125 +K Sbjct: 130 VAAKR 134 >gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L D +R V ++ + G+ A EA E E P+ +++D M Sbjct: 1 MK-IMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAEN-PDLVILDVMMPKLN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + A +R+ G++V + L + D G +AGA+ +L+KPF+ L + L Sbjct: 59 GFDVCAQLRK--KGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALL 116 Query: 119 QMQKSKD-ENQFLDAI 133 + + + E + ++I Sbjct: 117 RRRDHQAGETEERESI 132 >gi|307711284|ref|ZP_07647705.1| response regulator [Streptococcus mitis SK321] gi|307616935|gb|EFN96114.1| response regulator [Streptococcus mitis SK321] Length = 232 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A EA E ++ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKR-KAIDLIITDIMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + D ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121 Query: 122 KSKDENQFLD 131 E + + Sbjct: 122 HRGGETEVVS 131 >gi|299147304|ref|ZP_07040369.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23] gi|298514582|gb|EFI38466.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23] Length = 1339 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R F D F + E+ + EA E K P+ ++ D M + Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQTFK-KAPDLVISDIMMPEMDGL 1141 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++Q + V L + E + G GA+++++KPFN E L+ + L Sbjct: 1142 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1201 Query: 120 MQKSKD 125 Q+ + Sbjct: 1202 RQQLRK 1207 >gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 230 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 8/123 (6%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+ D + +R++ + L G+ V A + EA E ++ +++D M Sbjct: 1 MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDES--IGLVILDVEMPKK 58 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + +RQ V + +L G AG + ++ KPF+ L ++ L Sbjct: 59 SGIVVCSEIRQKSF---VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKAL 115 Query: 118 PQM 120 + Sbjct: 116 LRR 118 >gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905] gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905] Length = 247 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + + G+ V A E E + L++D + G Sbjct: 25 KKILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIE-AFDVLLLDVMLPGING 83 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR + V + + +AG AGA+ +++KPF E L +R + + Sbjct: 84 IEICRRVRTQ---SQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILR 140 Query: 120 MQKSKD 125 +++ Sbjct: 141 RATTQE 146 >gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea sp. MED297] gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea sp. MED297] Length = 1090 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 1/114 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ GF V A + A + K+ +++D M + + Sbjct: 965 KVLVVDDDLRNTYTLSKILSNEGFRVSIADNGQLALDKLSKDSNIALILMDIMMPVMDGY 1024 Query: 63 IAHVRQMPLGTDV-FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 R ++ + L + E AGA+ +L KP + E L +R Sbjct: 1025 ETIARIRAQHSETLPIIALTAKAMPEDRQKCLSAGADDYLPKPVDLEQLLVKVR 1078 Score = 83.3 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 6/109 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ G +A +C ++ P +++D + + Sbjct: 805 LLIIEDDPSFAAYLEKAARKQGMSALVTGYGLQALSYCLRKP-PGAVILDLGLPDIDGCE 863 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + ++ + ++ V+ + D + GA +L KP N E L Sbjct: 864 ILQVLQNLQHHRNIPVHVISALDDPA---RAMQLGAEEYLAKPINLEQL 909 >gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 227 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + + + F A + + + P+ +++D + G+ Sbjct: 1 MKKILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHF-WKPDLIILDIMLPGLN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + V + L E + G +GA+ +L KPF L +R L Sbjct: 60 GIQVCSKIRE---TSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLL 116 Query: 119 QMQKSK 124 + +++ Sbjct: 117 RRIENQ 122 >gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 248 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + + +++D M Sbjct: 20 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKRNG 78 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 79 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 135 Query: 120 M 120 Sbjct: 136 R 136 >gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590] Length = 219 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+V+ + + + V + + + +++D + Sbjct: 1 MANILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTY-DLIILDIMLPHIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + + + + G GA+ +++KPF E L +R + Sbjct: 60 GLEICRRIRQQYT---TPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAIL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPQKD 123 >gi|238025638|ref|YP_002909870.1| Two component transcriptional regulator, AraC family protein [Burkholderia glumae BGR1] gi|237880303|gb|ACR32634.1| Two component transcriptional regulator, AraC family protein [Burkholderia glumae BGR1] Length = 259 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD R + GF VF A+ + + P+ +++D +M Sbjct: 1 MNRVLVVDDHLDDRSLLAEFLRQQGFRVFMASDGLDGLAKARV-VRPDLILMDINMPNCD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ P + V + +L E+ +AG AGA ++ KPF+ E +R + Sbjct: 60 GLTACRKLKCDPATSAVPLIFLTASTQPEERVAGLEAGAIDYIAKPFHFEEVRLRIAIHL 119 Query: 119 QM 120 ++ Sbjct: 120 RL 121 >gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1201 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ D F V A EA + ++ + +++D M + Sbjct: 1079 KTVLVADDDVRNIFSLSKALEQFNMTVIAALDGKEALQKLDENPGIDVVLLDMMMPQMDG 1138 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ ++ V + + +AGA+ ++ KP + + L +R Sbjct: 1139 YETARKIREHYQWKNLPVIAVTAKAMTGDREKCIQAGASDYITKPVDIDQLISLLRVWL 1197 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 6/118 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ K G+ A E + P +++D + + Sbjct: 810 KTILIVEDDPNFAKSLLDYARKKGYKGIVAVQGDEGLKLA-SVYNPLGILLDIQLPVMSG 868 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++ P + V+ + + GA F+ KP E L+ +++ Sbjct: 869 WEVMDALKANPKTRPIPVHIMSSH---KLKNESLLKGAIDFVDKPVAFEQLQEVFKKI 923 Score = 59.0 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 11/104 (10%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + K + F +++ E + +++ + + +++D + Sbjct: 932 KKVLIVEDNPKHAKALAYFLETFNITSELKSNITEGIDALKRKEV-DCVILDMGVPDSKA 990 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 E + ++ P ++ + + + A+S ++K Sbjct: 991 YETLEVAKKDPGLENLPIIIFTGKSLSMSEELKIKKYADSIIVK 1034 >gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 305 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD S GF V ATS A ++ + P+ +++D M G+ F Sbjct: 11 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDLILLDAVMPGMDGFD 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A ++ V V ++ + E ++ AG +L KP N + LR +R Sbjct: 70 TCARLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129 Query: 122 KSKDENQF-LDA 132 +S + LDA Sbjct: 130 RSAQSARVALDA 141 >gi|300778246|ref|ZP_07088104.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503756|gb|EFK34896.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 350 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+++ +R+ + + V +A + + E + +P+ ++ D M Sbjct: 4 TKILIIEDHDDIRESTSEILELADYEVLQAKNGKQGVELAIRH-IPDIILCDIMMPELDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + + + + ++ + D ++ G GA+ +L KPF+ L A+ + Sbjct: 63 YGVLYLLSKREETSLIPFIFITAKADRAEVRKGIEMGADDYLTKPFDDIELLNAIESRLR 122 Query: 120 MQKSKDE 126 ++ + + Sbjct: 123 KKEHQKK 129 >gi|209550328|ref|YP_002282245.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536084|gb|ACI56019.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 233 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD +R + + GF V A EA+ L + +++D M G ++ Sbjct: 14 LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGID 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +V + L + I G AGA+ +L KPF+ L + + + Sbjct: 73 VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V A + E E E + +++D + + Sbjct: 3 KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ D ++ + ++AG GA+ +++KPF E L +R + Q Sbjct: 62 FEVT-RRLQQEKDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQ 120 Query: 122 KSKD 125 + Sbjct: 121 DIEA 124 >gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 215 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 ++V+ + K+ R G+ V T EA + EKE LP+ L++D + G+ F Sbjct: 1 MVVEDDMHIGKLLRLELGHEGYEVEVLTDGKEALKHLEKE-LPDLLILDVMLPGLDGFSV 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +R+ D+ V L + + + I G ++GA+ +L KPF E L + + + + Sbjct: 60 LEEIREYIST-DLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRRKG 118 Query: 123 SKDE 126 + Sbjct: 119 KVER 122 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ + + V A A + E + +++D + + Sbjct: 1 MK-ILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVET-YEYDLILLDIVLPKLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G V + L G AGA+ +++KP + E L +R L + Sbjct: 59 GISLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD ++ + L +G + + EK + P+ L++D M G+ + Sbjct: 383 KILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEK-IHPDMLILDIEMPGMSGI 441 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R G +V + +L + + E + GA+ F+ KP L + + Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501 Query: 121 QKSKDENQF 129 + + Sbjct: 502 VRLLKIMER 510 Score = 85.2 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 11/124 (8%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ D I R+ ++L G+ V S +A + P+ +++D M G+ + Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQH-PDVILLDLVMPGMNGWE 1134 Query: 64 AH--VRQMPLGTDVFVYYLLME-------VDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +++ D+ + + E +L KP L ++ Sbjct: 1135 TMAGLKKCSDTKDIPIVICSVYKSSQNNPNRQED-TNAESVKFADWLSKPVEETDLLNSL 1193 Query: 115 RELP 118 R++ Sbjct: 1194 RKVV 1197 Score = 64.1 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVLE 61 +L+++ H + + LF+ F A + EA +K ++ E Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRELPQM 120 + ++Q + V + + + G F K + + +L Q Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTIQEFEQRVMDLLQR 1324 >gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] Length = 241 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ ++ + G F A +A + + + +++D M + Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPM-DLMILDVMMPHLD 78 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F R+M +++ + L + + + G GA+ ++ KPF+ + L L Sbjct: 79 GFSVCKLAREM---SNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALL 135 Query: 119 QM 120 + Sbjct: 136 RR 137 >gi|163732982|ref|ZP_02140426.1| response regulator [Roseobacter litoralis Och 149] gi|161393517|gb|EDQ17842.1| response regulator [Roseobacter litoralis Och 149] Length = 429 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD S + RK+ +G+ V EA S EA + C P ++ D M + Sbjct: 25 ILVVDDSRLQRKILSSSLVRWGYDVIEAASGEEALDICIA-KRPELVISDWVMPTMDGIQ 83 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RELP 118 F R + + + L + + + G AGA+ FL KP N LR + + Sbjct: 84 FCKEFRALTSDSYGYFILLTSKSEKNDVAEGLDAGADDFLTKPVNGNELRARITAGERIL 143 Query: 119 QMQ-KSKDENQFL 130 +MQ + +N+ + Sbjct: 144 KMQLELTQKNRVI 156 >gi|163790188|ref|ZP_02184621.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159874463|gb|EDP68534.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 230 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME-- 57 M+++L+++ + + G+ + E E + +++D + Sbjct: 1 MNNILIIEDEKNLARFVELELKHEGYATEVRYNGRTGLEAAVAEDAHWDVILLDLMLPEL 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ +RQ+ ++V + + ++G GA+ +++KPF E L +R L Sbjct: 61 NGIDVCRRIRQV---SNVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAL 117 Query: 118 PQMQKSKDEN 127 + + + E Sbjct: 118 FRRIEIESEQ 127 >gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + + GF V A E E + +++D + V Sbjct: 1 MSKILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDY-DLIILDLMLPEVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VRQ ++ + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFDICRQVRQE---KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHM 116 Query: 119 QMQK 122 + Sbjct: 117 ERYN 120 >gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 224 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ V + + + V A+ E + + +++D + L Sbjct: 2 RILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPY-DLIILDWMLPKQDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V L + E ++AG +G++ +L KPF L +R L + Sbjct: 61 SVLKELRNQKN--ATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRR 118 Query: 121 QKS 123 + Sbjct: 119 SEQ 121 >gi|120436048|ref|YP_861734.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117578198|emb|CAL66667.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 1406 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + +RK R D + + EA + E E KE++PN ++ D M + Sbjct: 1157 ILVVDDNKDIRKFIRQSLQD-NYNIQEAENGREGFEKA-KEIVPNIIISDLIMPEMDGIE 1214 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F H + P + + L + E + +GA+ +L+KPFN E L+ ++ + + Sbjct: 1215 FCHHCKNDPATSHIPFLLLTAKDSQESELVAMESGADDYLIKPFNLELLQLKLKNIITKR 1274 Query: 122 KSKDE 126 + Sbjct: 1275 NHLRK 1279 >gi|329960930|ref|ZP_08299209.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328532216|gb|EGF59020.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 229 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA N L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALRM--DIGRYNLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASLLKKDKKTAHVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAVRVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + + + + I Sbjct: 123 TQQAETERAPEQI 135 >gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ +R R + + V A EA + + +++D + + Sbjct: 3 ILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEY-DLVLLDIMLPKVNGIA 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + L + + G AGA+ +L KPF+ + L +R L + Sbjct: 62 VCKALREKS--SSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRRG 119 Query: 122 KSKD 125 K D Sbjct: 120 KKAD 123 >gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 242 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + + V A A K + ++D M + Sbjct: 11 RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKY-DLFILDLMMPKIDGI 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ T+V + L + I G GA+ ++ KPF+ + ++ L + Sbjct: 70 EVCRKLREK---TNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126 >gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] Length = 242 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +R + + + V A A K + ++D M + Sbjct: 11 RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKY-DLFILDLMMPKIDGI 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ T+V + L + I G GA+ ++ KPF+ + ++ L + Sbjct: 70 EVCRKLREK---TNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126 >gi|225848943|ref|YP_002729107.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] gi|225643812|gb|ACN98862.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] Length = 219 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + + G++V A EA F + + +++D + + F Sbjct: 2 KVLLVEDNIGLNASLKEILELNGYIVDGAFDADEALNFL-QNSFYDVIILDVMLPDIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G V L + + G GA+ ++ KPF E L ++ + + Sbjct: 61 TLLKLIREKGIKTPVIMLTAKDQLRDKVKGLELGADDYITKPFEVEELLARIKAVARRSS 120 Query: 123 SKDEN 127 + + Sbjct: 121 VEKSD 125 >gi|224536547|ref|ZP_03677086.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM 14838] gi|224521803|gb|EEF90908.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM 14838] Length = 1356 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ ++ +R+ + + VF+ + EA E + + ++ D M + Sbjct: 1109 RTLLVVEDNNEIRQYLKSKLATI-YNVFDCDNGHEALEIIHR-REIDLVISDVMMPVMDG 1166 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + V L V + G +GAN ++ KPFN + L ++ L Sbjct: 1167 IELCKAIKSNIEINHIPVILLTAHVSDTHVKDGLSSGANDYVFKPFNFDLLLARIQNLLD 1226 Query: 120 MQKSKDE 126 + + Sbjct: 1227 NNERLRQ 1233 >gi|210610549|ref|ZP_03288475.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787] gi|210152408|gb|EEA83414.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787] Length = 225 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 8/127 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + + + F + + A S EA + P+ +++D +M G+ Sbjct: 6 KLLIVDDERGIVDMIQSYFQTQ-YDILTAYSGQEALKKVA--CKPDLILLDINMPGMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + +L ++ I G +AGA+ +++KPF+ + L + + Sbjct: 63 TVCQQIREHIA---CPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRR 119 Query: 121 QKSKDEN 127 ++ + N Sbjct: 120 EQRRQNN 126 >gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family [Cyanothece sp. ATCC 51142] Length = 225 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLVD + + H+ + G+ V A + E + + L++D + Sbjct: 1 MK-ILLVDDEAELTEPLYHILSHEGYEVDVADDGQKGYELALQNTY-DLLILDWMLPRKP 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L +R G + V +L + + + G AGA+ +L+KPF L +R L Sbjct: 59 GLSICQELRSQ--GKNAPVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALL 116 Query: 119 QMQKSKDE 126 + + E Sbjct: 117 RRSAASVE 124 >gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638] gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 238 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + R D G+++ +A ++ + +++D + V Sbjct: 5 KQILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKAL-LLLEQAQWDAVILDLMLPHVDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R L + + + I G GA+ +L KPF+ + L ++ L + Q Sbjct: 64 LEICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 123 Query: 122 KS 123 ++ Sbjct: 124 QA 125 >gi|157803455|ref|YP_001492004.1| response regulator PleD [Rickettsia canadensis str. McKiel] gi|157784718|gb|ABV73219.1| response regulator PleD [Rickettsia canadensis str. McKiel] Length = 450 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA KE + +++D M + Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILTKEK-IDIILLDVMMSEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 60 GFEVCKRIKTNLETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLY 119 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 120 RMKSLIDELKLRNS 133 Score = 59.0 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K R + + ++ E + E P+ ++I ++E + Sbjct: 152 KKILLINDDVVQAKNIRQMLLKITASIKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208 Query: 62 FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ + V + + E ++ G G N + + P L +R Sbjct: 209 PLRISVILRRKAKISGVVIILQIDEDGMPLVVKGVELGINDYFVYPIEESELLARIRTQL 268 Query: 119 QMQKSKDENQ 128 + ++ +D + Sbjct: 269 RRKQYQDNLR 278 >gi|146302248|ref|YP_001196839.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156666|gb|ABQ07520.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 230 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL + + + F V A + A ++ K + V D M + Sbjct: 1 MKRLLLAEDDFDFAAILKQYLELHQFEVIWAENGEIALDYF-KNQTFDICVFDVMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + ++ +L E I G + GA+ +++KPF + L ++ + + Sbjct: 60 GFSLAEKTITINPEIPFIFLTARKLKEDKIIGLKLGADDYIVKPFEVDELVLRLQNILKR 119 Query: 121 QKSKDENQ 128 + K + Sbjct: 120 IEQKRSLE 127 >gi|154244586|ref|YP_001415544.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158671|gb|ABS65887.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 255 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +R+ GF V A S + + + +++D M G Sbjct: 13 RIIVVDDEEALRETVAEYLAGQGFRVRSAASGRD-LDTLLAAEPADLILMDVHMPGEDGL 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L D +AG GA+ +++KPF+ L+ +R + + Sbjct: 72 TLARRIRSA-AATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRR 128 >gi|194334237|ref|YP_002016097.1| response regulator receiver protein [Prosthecochloris aestuarii DSM 271] gi|194312055|gb|ACF46450.1| response regulator receiver protein [Prosthecochloris aestuarii DSM 271] Length = 122 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L++D S +R++ H F V A + A E E+ + P+ ++D +M G Sbjct: 1 MKQSRILIIDDSASIRRLLAHNLGKR-FEVLVADNANHALELLEQGVTPDLAIVDVAMPG 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F + +++ P + + + L + G + GA+ +L KPFN E L + Sbjct: 60 MDGFSLVERLKKDPSYSTIPIIMLTARDESADKEKGLKLGADDYLTKPFNTEDLADRIEH 119 Query: 117 LP 118 L Sbjct: 120 LL 121 >gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R++ R GF V + EA + P+ +++D + + Sbjct: 6 RVLVVEDDPGIRELLREGLRHAGFEVIATATGREAEWQANRS-RPDLVLLDVMLPDIDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + R + V V ++ +AG G + ++ KPF E L ++ + + + Sbjct: 65 LLAERLVHAIGPVPVVFVTARDSTADKVAGLARG-DDYVTKPFRMEELIARIQAVLRRSR 123 >gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R G V A S + + +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKDEN 127 + + + + Sbjct: 117 RRGERESSD 125 >gi|265752927|ref|ZP_06088496.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236113|gb|EEZ21608.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1408 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + ++ + V EA+ EA + + + +++V D M + Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E I R G + +LLKPF+ L + + + Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272 Query: 121 QKSKDE 126 +K + Sbjct: 1273 RKRFQQ 1278 >gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] Length = 222 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+++ ++ + + G+ V A E + ++ + +++D M Sbjct: 4 SILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNY-DLIILDIMMPNLDGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + +L + G + ++ KPF+ L + + + Sbjct: 63 GVCKMIRK---TSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRR 119 Query: 121 QK 122 Sbjct: 120 SN 121 >gi|157964306|ref|YP_001499130.1| response regulator PleD [Rickettsia massiliae MTU5] gi|157844082|gb|ABV84583.1| Regulatory components of sensory transduction system [Rickettsia massiliae MTU5] Length = 456 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD K+ + V A S EA +KE + +++D M + Sbjct: 7 MTTILVVDDIEPNIKLLTAKLLQEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEID 65 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ P T + V + D + + G AGA+ FL KP N L ++ L Sbjct: 66 GFEVCKTIKTDPATTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 125 Query: 119 QMQKSKDENQFLDA 132 +M+ DE + ++ Sbjct: 126 RMKSLIDELKLRNS 139 Score = 59.4 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + K + + V ++ E + E P+ ++I ++E + Sbjct: 158 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 214 Query: 62 FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + V + + E ++ G G N + + P L +R Sbjct: 215 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 274 Query: 119 QMQKSKDENQ 128 + ++ +D + Sbjct: 275 KRKQYQDNLR 284 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ G+ V + +A + L++D S+ + Sbjct: 2 RILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDA-HRALANDIYALLLLDISLPKMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + V L + +AG GA+ ++ KPF+ +R L + Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRR 118 >gi|117619167|ref|YP_854965.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560574|gb|ABK37522.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 423 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + V + G + A A + E + +++D M + Sbjct: 202 MK-ILVVEDNPQVAETIMDYLELAGHRLDCAYHGQAALQLL-AEQRFDVIIMDVMMPRLD 259 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V +L + +AG +AG + +L+KPF E L ++ L Sbjct: 260 GLSTVARLREQGIPTPVLFLTARDSLDDKLAGFKAGGDDYLVKPFAMEELEVRLQALALR 319 >gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 235 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L++D +R + GF +A + E P+ +++D + G+ Sbjct: 12 MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTK-PDLVLVDLRLPGMS 70 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + L D + GA+ +++KPF L +R + Sbjct: 71 GTEICKQLRA--ARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVL 128 Query: 119 QM 120 + Sbjct: 129 RR 130 >gi|94497234|ref|ZP_01303806.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] gi|94423339|gb|EAT08368.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] Length = 236 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S++LV+ +R + + G+ V A+S E + + + +V+D + G + Sbjct: 5 SIILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPV-DLVVLDVMLPGTNGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +DV + ++ I G GA+ +L KPF L +R + + Sbjct: 64 DLCRQIRRK---SDVPIIFISARGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRR 120 Query: 121 ---QKSKDENQFLDA 132 ++ DE++ +A Sbjct: 121 VGVERGPDEHRESEA 135 >gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 242 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + GF V A S A P+ LV+D + + F Sbjct: 19 RVLVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSP-PDLLVLDVMLPDIDGF 77 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V +L E + G G + ++ KPF L +R + + Sbjct: 78 AVCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAG 137 Query: 123 SKD 125 + D Sbjct: 138 AAD 140 >gi|298208466|ref|YP_003716645.1| two-component system, transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] gi|83848389|gb|EAP86258.1| two-component system, transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] Length = 236 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + + V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGIVLKDYLSMNDYEVTHAKNGMEGFEKFKKDDY-DLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +V + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNEEVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIQAIMQRK 124 Query: 122 KSK 124 ++ Sbjct: 125 STE 127 >gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 263 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + GF + A + + E KE + ++ID + + Sbjct: 33 RVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESY-DAIIIDVILPVMDGL 91 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V L + ++G G + +L KPF L + L + K Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 123 SKDENQFLDA 132 E L A Sbjct: 152 VNQETVQLKA 161 >gi|125974330|ref|YP_001038240.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|256003450|ref|ZP_05428440.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|125714555|gb|ABN53047.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|255992474|gb|EEU02566.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|316941477|gb|ADU75511.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 363 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD V + D F + AT A + ++ P+ +++D M + F Sbjct: 12 ILIVDDIPEHIDVAVQVLRDSNFKIRVATDGNTALKLIYQQK-PDLILLDIYMPEMDGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118 ++ P ++ V +L D E + G +G +++KPFN L ++ Sbjct: 71 LCRLIKNTPDLKNIPVIFLTSFSDEESIRKGFESGGQDYVVKPFNASELLSRVKTHLMLK 130 Query: 119 -QMQKSKDENQFLDA 132 Q + K+ N+ LD+ Sbjct: 131 CQAESLKEANKELDS 145 >gi|332876711|ref|ZP_08444469.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685270|gb|EGJ58109.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 232 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + + G+ V A S EA + + L++D M + F Sbjct: 6 RILVVDDEEDLCDILKFNLENEGYEVETANSAEEALKM--DLTKFHLLLLDVMMGEISGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q+ D+ + +L + G GA+ ++ KPF+ ++ ++ + + Sbjct: 64 KMAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVLRR 123 Query: 121 QKSKD 125 + Sbjct: 124 TAPQQ 128 >gi|327312954|ref|YP_004328391.1| response regulator receiver domain-containing protein [Prevotella denticola F0289] gi|326945707|gb|AEA21592.1| response regulator receiver domain protein [Prevotella denticola F0289] Length = 716 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + +R + D + V A+ + + KE +P+ +V D M + Sbjct: 467 TVLVVDDNKDIRVYLQLTLQDT-YQVLLASDGRQGLQLA-KENIPDLIVSDVMMPVMDGL 524 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ L + V L + I G GA++++ KPF+ + L+ + L Q Sbjct: 525 ELCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKARIGNLLQN 584 Query: 121 QKSKDEN 127 ++ + Sbjct: 585 RRRLHQL 591 >gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 239 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A+ A + K+L P+ +++D + + Sbjct: 12 RTILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAA-KQLRPDLVIMDIMLPVMDG 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + V V L + G AGA+ ++ KPF+ L + L + Sbjct: 71 LEATKRIVADRP-VPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 129 Query: 122 KSKD 125 + Sbjct: 130 ERAK 133 >gi|296118918|ref|ZP_06837491.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes DSM 20306] gi|295968016|gb|EFG81268.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes DSM 20306] Length = 236 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ GF V A S EA +E+ P ++D M G+ F Sbjct: 10 TVLVVDDEPNIVELLTVSLKFQGFNVRSANSGTEALRIA-REINPEAYILDVMMPGMDGF 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D V YL + ++ I G GA+ ++ KPF+ E + +R + + Sbjct: 69 ELLAKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 128 Query: 123 S-KDEN 127 + +DEN Sbjct: 129 AGQDEN 134 >gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 225 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R G V A S + + +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 RRGERES 123 >gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803] gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803] Length = 225 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|218128693|ref|ZP_03457497.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697] gi|217989148|gb|EEC55463.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697] Length = 1357 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R+ + + +A + EA KE ++ D M + Sbjct: 1112 SILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIV-KEQEVGLILTDVMMPVMDGL 1169 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + D ++ + G + GA+ ++ KPF+ + ++ L + Sbjct: 1170 QLCKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFRT 1229 Query: 121 Q 121 + Sbjct: 1230 R 1230 >gi|220910558|ref|YP_002485869.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219867169|gb|ACL47508.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLLVD + + + G+ V A+ EA E + +PN ++ D M + Sbjct: 12 KKLLLVDDDPNLVLLVKDYLELQGYQVVTASHGREALRILE-QGIPNMIICDVMMPEMDG 70 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+ VR P + V +L + + + G GA+ +++KPF + L + + Sbjct: 71 YTFVKSVRDNPRTQWIPVLFLSAKGQIQDRVIGLNTGADVYMVKPFEPDELIAQIEASLK 130 Query: 120 MQKSKDENQ 128 + ++Q Sbjct: 131 QAERMIQHQ 139 >gi|148378896|ref|YP_001253437.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931468|ref|YP_001383278.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936439|ref|YP_001386827.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288380|emb|CAL82457.1| two component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927512|gb|ABS33012.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932353|gb|ABS37852.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 223 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +RK+ + N G+ EA A + KE + ++ D M + Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDVLYKE-YIDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + + + F G R G + +++KP + + + L + Sbjct: 60 GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119 Query: 121 QKSKDENQ 128 + +E + Sbjct: 120 SQIINERR 127 >gi|317477866|ref|ZP_07937052.1| two component regulator propeller [Bacteroides sp. 4_1_36] gi|316906002|gb|EFV27770.1| two component regulator propeller [Bacteroides sp. 4_1_36] Length = 1360 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+VD V R L + + V + +A + +E P+ ++ D M G Sbjct: 1114 TLLVVDDDTEVAHYLRTLLSAH-YKVICRFNADDALKALHEES-PDLVLSDVVMPGKDGY 1171 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +++ + V + + E + G GA++++ KPF+ L ++ L + Sbjct: 1172 QFCREIKEDLQLCHLPVILVTAKATVENQVEGLDTGADAYVTKPFDPAYLLALIKSLLKN 1231 Query: 121 QKSKD 125 ++ Sbjct: 1232 REKAR 1236 >gi|304413239|ref|ZP_07394712.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] gi|304284082|gb|EFL92475.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] Length = 239 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + GF V + + + + LV+D + G Sbjct: 6 KILVVDDDVRLRALLDRYLTEQGFQVRSVANAEQ-MDRLLARESFHLLVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + + + + G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLHNQNNPIPIIIVTAKSEDVDRVVGLEIGADDYMSKPFNPRELLARIRAVLRRQ 123 >gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 231 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEFI 63 +VD V+ G+ V A E P+ +++D +M G LE Sbjct: 5 IVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAE-APDGVLLDVTMPVLGGLEVC 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G V V L +AG AGA+ +L+KPF + L +R L + Sbjct: 64 RVLRA--EGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRR 118 >gi|291566666|dbj|BAI88938.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 592 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + G+ V +A + A K + P+ +++D M G+ Sbjct: 8 ILVVDDKPENLHLLSEILMMEGYNVRKAVNGKMAL-MAVKTVPPDLILLDIMMPGMDGYQ 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ V V +L D + +G ++ KPF E + + ++ Sbjct: 67 VCKELKNNQNLAKVPVIFLSALNDVFDKVKAFGSGGVDYITKPFQMEEVLVRVENHLMLK 126 Query: 122 KSKDE----NQFLDA 132 ++ + N L+A Sbjct: 127 AAEKKILELNTELEA 141 >gi|218670388|ref|ZP_03520059.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli GR56] Length = 231 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R V G EA + + +++D M + Sbjct: 4 RILVVDDEPHIRDVICFALERGGLTSTAVRGGTEAMAAFRRGN-IDLIILDIGMPDMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ + + + +L + I G G + ++ KPF+ L ++ + + Sbjct: 63 EVCRQIRQ---TSALPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119 Query: 121 QKS-KDENQFLDAI 133 + ++ A+ Sbjct: 120 SGNGAAPDRRHAAL 133 >gi|212692221|ref|ZP_03300349.1| hypothetical protein BACDOR_01717 [Bacteroides dorei DSM 17855] gi|212665098|gb|EEB25670.1| hypothetical protein BACDOR_01717 [Bacteroides dorei DSM 17855] Length = 1408 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + ++ + V EA+ EA + + + +++V D M + Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E I R G + +LLKPF+ L + + + Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272 Query: 121 QKSKDE 126 +K + Sbjct: 1273 RKRFQQ 1278 >gi|34557247|ref|NP_907062.1| two-component hybrid sensor and regulator [Wolinella succinogenes DSM 1740] gi|34482963|emb|CAE09962.1| TWO-COMPONENT HYBRID SENSOR AND REGULATOR [Wolinella succinogenes] Length = 372 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 52/135 (38%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L VD + + + + + V A S EA E + E + +++D M + Sbjct: 7 TILAVDDTEVNVDILMGILK--NYDVIPALSGKEALEIVKNEK-IDLILLDIMMPEMDGY 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + ++ + + G GA ++ KPFN L + ++ Sbjct: 64 EVCRRLKSEEATRSIPIIFITAKTTESDIKEGFERGAVDYVTKPFNPIELISRVDTHLEL 123 Query: 121 Q--KSKDENQFLDAI 133 + + + E + I Sbjct: 124 RSYQLRLEERITQEI 138 >gi|320103510|ref|YP_004179101.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319750792|gb|ADV62552.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1215 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 1/116 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R+V G+ V A+ E + +++D M + Sbjct: 864 SILVVEDNPDLRRVLTAFLTAAGWRVETASDGEEGLAKA-TTTSFDLILMDLQMPRLDGV 922 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A R G + L + G + +L KP + L + + Sbjct: 923 EATRRLRARGVVTPIVALTANDLDGERQRCLEQGFDDYLTKPVGQGELIQRLAQHL 978 >gi|312960762|ref|ZP_07775267.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6] gi|311284420|gb|EFQ62996.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6] Length = 1234 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD S + L D ++V A +A ++ + +V D M Sbjct: 833 KVLVVDDSPEMLSYLSELLRD-DYVVATAVDGEQAWALLQRRP-IDVVVSDVMMPLLDGF 890 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ P + V + + ++G +GA+ ++ KPF+ L+ +R +M Sbjct: 891 GLTARIKGSPGFAHLPVILVTARGGSDACVSGLESGADDYIAKPFSPLELKARVRAALRM 950 Query: 121 QKSKDEN 127 + + E Sbjct: 951 SQVQSEL 957 >gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1823 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1703 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDGY 1762 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+MP + + L + +GA+ ++ KP + + L M++ + Sbjct: 1763 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMQQWMR 1821 >gi|270294829|ref|ZP_06201030.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274076|gb|EFA19937.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1336 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 4/129 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + + + + F + A++ EA + EL+P+ +V D M + Sbjct: 1091 LIVDDNEDLVAFMKDSLSLY-FRIQSASNGREAWQKI-SELMPDIIVSDVMMPEMDGNEL 1148 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+ +D+ + L E + G GA+ ++ KPFN E L MR+L + K Sbjct: 1149 CRWVKTDKRTSDIPMILLTARQAVEDKVEGLTIGADDYVTKPFNVEILILRMRKLIDLSK 1208 Query: 123 SKDENQFLD 131 + +D Sbjct: 1209 KRKAKSLID 1217 >gi|237711505|ref|ZP_04541986.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454200|gb|EEO59921.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1408 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + ++ + V EA+ EA + + + +++V D M + Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E I R G + +LLKPF+ L + + + Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272 Query: 121 QKSKDE 126 +K + Sbjct: 1273 RKRFQQ 1278 >gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 243 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + ++ + GF V E + + +++D + G+ Sbjct: 3 QRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEY-DLILLDVMLPGMNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G + L + E+++ G + GA+ ++ KPF L + + + Sbjct: 62 FQILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 120 >gi|153937923|ref|YP_001390256.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152933819|gb|ABS39317.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318352|gb|ADF98729.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 223 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +RK+ + N G+ EA A + +E + ++ D M + Sbjct: 1 MFRVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYRE-YIDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + + + F G R G + +++KP + + + L + Sbjct: 60 GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119 Query: 121 QKSKDENQ 128 + +E + Sbjct: 120 SQIINERK 127 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas arsenicoxydans] Length = 229 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ G+ V A + +A +++D ++ + Sbjct: 2 RILIVEDDAVLAAALTRALTQAGYAVDYADNGEDA-NRALSNDAYALVLLDIALPKMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V V L + +AG GA+ ++ KPF+ +R L + Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRR 118 >gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 226 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+++ V+K R F GF V A A + + P +++D + G Sbjct: 1 MDRILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQA-TSPRAVLLDLRLPGKS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +V + L D + GA+ ++ KPF+ L +R Sbjct: 60 GQDICREIRGFS--PNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTAL 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 228 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 54/129 (41%), Gaps = 4/129 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +L+V+ ++++ + + V A+ E + K+ + +++D M Sbjct: 8 MKNYHILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQS-FDLILLDVMMPN 66 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + F + + +++ + L + + + G G + ++ KPF+ L + + Sbjct: 67 LNGFEVA-KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVL 125 Query: 119 QMQKSKDEN 127 + ++ + Sbjct: 126 RRSNNQSTD 134 >gi|257791925|ref|YP_003182531.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257475822|gb|ACV56142.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 234 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + ++ + V A + E E+ P+ +++D M + F Sbjct: 4 TVLIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLER-KSPSVILVDLMMPEMNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ ++ + + + G GA+ ++ KPF+ + +R + + Sbjct: 63 -DFIKEARSVSNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRR 119 >gi|291287141|ref|YP_003503957.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884301|gb|ADD68001.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 223 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ +R + + F + E E + + +++D + G Sbjct: 1 MIKVLVIEDHEEIRDLISYNLGKESFETICFDNANEGLIHLENNDV-DIILLDLMLPGLK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F+ VR + V + + + + +I G GA+ +L KPF+ + L + + Sbjct: 60 GMQFLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPFSIKILIAKINAIL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 224 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + G+ V A A ++L + +++D + GV Sbjct: 1 MTHILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAA-RQLNLDLIILDWMLPGVS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L + + +AG AGA+ +++KPF+ E L +R + Sbjct: 60 GLEICRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRR 119 Query: 121 QKSKDENQFL 130 K D L Sbjct: 120 SKETDSADIL 129 >gi|218508381|ref|ZP_03506259.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli Brasil 5] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R V G S EA + + +++D M + Sbjct: 4 RILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGN-IDLIILDIGMPDMDGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + +L + I G G + ++ KPF+ L ++ + + Sbjct: 63 EVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119 Query: 121 QKS 123 + Sbjct: 120 SGN 122 >gi|206576950|ref|YP_002240552.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342] gi|206566008|gb|ACI07784.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 + LV+ + ++ GF V A E P+ ++D + + F Sbjct: 5 RIWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAA-AHQAPDVAILDVGLPDISGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + V +L D + G GA+ ++ KPF+ + +R + + Sbjct: 64 ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121 >gi|189460862|ref|ZP_03009647.1| hypothetical protein BACCOP_01509 [Bacteroides coprocola DSM 17136] gi|189432436|gb|EDV01421.1| hypothetical protein BACCOP_01509 [Bacteroides coprocola DSM 17136] Length = 1327 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++V+ + +R +D + V A + EA + + + P+ ++ D M + Sbjct: 1076 RIMIVEDNASLRLFLMKSLSDI-YQVDGAENGQEAIDKIKVQ-QPDLIISDVMMSVMDGE 1133 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 ++ + + + L D + ++ G A+ ++ KPF+ LR + + + Sbjct: 1134 TMCRTLKSDIETSHIPIILLTALGDKKDILRGLETKADMYITKPFDLMVLRANISNILEN 1193 Query: 120 ----MQKSKD 125 +K + Sbjct: 1194 GEIIRKKLQQ 1203 >gi|160882799|ref|ZP_02063802.1| hypothetical protein BACOVA_00761 [Bacteroides ovatus ATCC 8483] gi|156111823|gb|EDO13568.1| hypothetical protein BACOVA_00761 [Bacteroides ovatus ATCC 8483] Length = 1328 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA KE P ++ D M + Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1120 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + ++ G GA+ +L+KPF+ + LR + L Sbjct: 1121 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180 Query: 120 MQKSKD 125 ++ Sbjct: 1181 NRELLR 1186 >gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured bacterium] Length = 962 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + G + + EA E + + +++D M + Sbjct: 843 KTILMVDDDIRNVFALSSVLEEKGMTIVIGENGKEALELLKNNPGIDLVLMDIMMPEMDG 902 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + + L + AGAN +L KP + + L +R Sbjct: 903 YEATRQIRKQTQFSKLPIIALTAKAMKGDRQKCIDAGANDYLSKPIDIDKLLSLLRVWL 961 Score = 94.5 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ K+ L + GF A + + + P +++D + G+ Sbjct: 577 LLIIEDDPKFAKILFDLAREKGFKGLIAGDGAAGLQLAD-QYSPVAIILDIGLPGMDGWA 635 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + +++ P + V+++ + + + GA +L KP + L A + Sbjct: 636 VMEKLKKNPDTRHIPVHFMSAQDTP---LEAMKMGAIGYLTKPVTLDILNDAFNTI 688 Score = 76.0 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 7/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 LL+V+ +R L N + A + +A + E + +V+D + Sbjct: 697 KKLLVVEDDDTMRASMLELLNGEDVDITPAATGEKAYHLLQSE-RFDCMVLDLGLTDISG 755 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELP 118 + ++ + + + + ++ + A S ++K + E L + Sbjct: 756 FGLLEKIKADATMSHIPIIVYTGKDLTKEEETKLKQHAESIIIKGVKSPERLLDEVTLFL 815 Query: 119 QMQKS---KDENQFL 130 +S + + + L Sbjct: 816 HRIESDLPEAQQKKL 830 >gi|319893564|ref|YP_004150439.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03] gi|317163260|gb|ADV06803.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R++ + F G+ V A++ EA + + +VID M + Sbjct: 1 MTHILIVDDEQDIREICKTYFEYEGYHVSTASNGKEALDLLNTN--VDVMVIDIMMPEMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D+ YL + + I G GA+ ++ KPF+ L ++ L Sbjct: 59 GYEVVREMKNQGLDIPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNR 118 >gi|306828529|ref|ZP_07461724.1| response regulator [Streptococcus mitis ATCC 6249] gi|304429328|gb|EFM32413.1| response regulator [Streptococcus mitis ATCC 6249] Length = 232 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ V A E E K + ++ D M + Sbjct: 3 KTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI+ V+ + D + + + I G GA+ F++KPF+ L + + + Sbjct: 62 YDFISEVQYIA--PDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILR 119 Query: 120 MQKSKDENQFLD 131 E + ++ Sbjct: 120 RLSRGGETEQIE 131 >gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 231 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + GF V +A +A + E + + +++D M G+ Sbjct: 1 MQNILVCDDDKQIVEAIDIYLTGEGFHVIKAYDGYDALKLLEDHEV-DLMILDVMMPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRTTLKVRE-TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118 >gi|295135073|ref|YP_003585749.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294983088|gb|ADF53553.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 240 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLKDYLAMNEYEVTHAKNGMEGFEKFKKDDY-DLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNEEIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124 >gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response transcriptional regulator PhoB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 241 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ ++++ R G+ + A E +E LP+ +ID + G L Sbjct: 11 VLVVEDDKGIQELLRFTLVCGGYQPLCVDTAEAA-EALLRETLPDLALIDWMLPGKSGLA 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L + +AG GA+ +++KPF+ + L + + + Sbjct: 70 LTGRLRSDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRR 128 >gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 250 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 10/127 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56 +L+V+ ++R + + G+ + A E + E + +V+D + Sbjct: 20 RILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDLML 79 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +R G + + L + + G GA+ +L KPF+ L Sbjct: 80 PQINGLDICRLLR--YHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 115 RELPQMQ 121 R L + Q Sbjct: 138 RALIRRQ 144 >gi|146307499|ref|YP_001187964.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145575700|gb|ABP85232.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 227 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + GF V A + +V+D + G+ Sbjct: 2 RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + L + + G AGA+ +L+KPF L + + + Sbjct: 61 QVCKRLRED-GRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRR 119 Query: 121 QKSKDENQFLDA 132 + + Q A Sbjct: 120 SRGSRKRQLQVA 131 >gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 221 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++++ R + V A + E +K L + +++D + + Sbjct: 1 MTHILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLY-DLVLLDVMLPDID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +DV + L + E I G G + ++ KPF+ + + Sbjct: 60 GYSICKIIRGQ---SDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVL 116 Query: 119 QMQKSKD 125 + S + Sbjct: 117 RRAASTE 123 >gi|115359360|ref|YP_776498.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|170698563|ref|ZP_02889632.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171317335|ref|ZP_02906530.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172064153|ref|YP_001811804.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115284648|gb|ABI90164.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|170136497|gb|EDT04756.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171097476|gb|EDT42315.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171996670|gb|ACB67588.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 246 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E R E + P+ +V+D + G Sbjct: 7 VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLE-DGAPDLIVLDLMLPGEDGLT 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|330966402|gb|EGH66662.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 254 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R F V A + ++ + +V+D + F Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQP-FDVVVLDVMLPDGDGF 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R ++ V L + G GA+ +L KPF L + + + + Sbjct: 71 ELCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128 >gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] Length = 231 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ R GF V A E E L++D + G+ Sbjct: 1 MRKILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEY-ALLLLDVMLPGIS 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR+ +V V + D I G GA+ +++KPF+ L R Sbjct: 60 GFEICREVRKS---KNVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHI 116 Query: 119 QMQK 122 Q+ + Sbjct: 117 QIHE 120 >gi|218440881|ref|YP_002379210.1| response regulator receiver protein [Cyanothece sp. PCC 7424] gi|218173609|gb|ACK72342.1| response regulator receiver protein [Cyanothece sp. PCC 7424] Length = 125 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+VD S +R++ L G V EA S EA+E +K+ +P+ ++ D M + Sbjct: 1 MITVLIVDDSASLRQILLELLEKRGINVLEAASGMEAQEVIQKQ-IPDLVITDLIMPQMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P DV V + + G + GA++++ KPF+ + ++ L Sbjct: 60 GYELCRWIKNNPNTQDVPVLICSTKSEEFDRYWGMKQGADAYITKPFDNAEMLQTIKFLL 119 Query: 119 QMQK 122 Q ++ Sbjct: 120 QNRR 123 >gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] Length = 234 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+++ ++ V + D G+ V A+ E E +E P+ +++D + + Sbjct: 13 KTILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKF-REYHPDLILLDLMLPKMNG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V + L D + G A A+ ++ KPF+ + + + + Sbjct: 72 FSVCEAIRKE---SQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLR 128 Query: 120 MQKS 123 + Sbjct: 129 RAEQ 132 >gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB] gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 226 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + GF T +A + +V+D + + Sbjct: 1 MK-ILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGH-DLVVLDVGLPDMS 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R +DV V +L D I G G + ++ KPF+ + +R + Sbjct: 59 GFDVCRALR---RYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAIL 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 842 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 4/118 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LL + + I R + L G V +A E KE + +++D M + Sbjct: 718 RILLAEDNEINRFLAVELLKGLGHEVTTVQDGRQALEILSKE-RFDLVLMDVQMPQMHGD 776 Query: 61 EFIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +R G V + L AG + +L KP + + L ++ + Sbjct: 777 EVTRRIRAGEAGDPHVPIVALTAYALKGDRERFLAAGMDDYLSKPIDMQELERVLKRI 834 >gi|295100030|emb|CBK89119.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium cylindroides T2-87] Length = 231 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ VR + + A + EA E E P+ L++D + + Sbjct: 5 SVLVVEDDKSVRNLIVTTLQANDYPYTSAENGKEALSKIETE-RPDVLLLDLGLPDIDG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +++ + + + + I GA+ +L KPF+ + L +R + Sbjct: 63 IEVIKELRTWSNMPIIVISARSEDKDKIQALDMGADDYLTKPFSVDELLARLRVTQRR 120 >gi|237720705|ref|ZP_04551186.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|298484152|ref|ZP_07002318.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|229449540|gb|EEO55331.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|298269656|gb|EFI11251.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 1328 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA KE P ++ D M + Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1120 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + ++ G GA+ +L+KPF+ + LR + L Sbjct: 1121 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180 Query: 120 MQKSKD 125 ++ Sbjct: 1181 NRELLR 1186 >gi|225572481|ref|ZP_03781345.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM 10507] gi|225040053|gb|EEG50299.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM 10507] Length = 295 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+V+ + + + G+ V A S+ ++ P+ +++D ++ Sbjct: 67 NKILIVEDDRGLAEGIKFYLEKEGYRVVMAGSLGGG-RVLYRQEKPDAVLLDLNLPDGDG 125 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V + + + G GA+ +L KPF+ LR +R+L + Sbjct: 126 MSFCREIRKN---SQVPILMVTARDMETDEVMGLETGADDYLTKPFSLTVLRTRLRKLLE 182 Query: 120 MQK 122 Q+ Sbjct: 183 RQQ 185 >gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 220 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ ++++ + + + A+ E + + + +++D M + F Sbjct: 4 NILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQS-FDLILLDVMMPNLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + +++ + +L + + + G G + ++ KPF+ L ++ + + Sbjct: 63 EVA-KMLRNHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSN 121 Query: 123 SKD 125 K Sbjct: 122 HKS 124 >gi|91772885|ref|YP_565577.1| response regulator receiver [Methanococcoides burtonii DSM 6242] gi|91711900|gb|ABE51827.1| CheY-like response regulator receiver [Methanococcoides burtonii DSM 6242] Length = 302 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD ++ L + + A+ EA + KE L + +++D M Sbjct: 23 TILIVDDEPNNVELLEALL-FVDYEIMTASGGQEALDIINKENL-DLVLLDVMMPEITGY 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E H++ + V + + E I G AGA+ FL KP +R L +R L ++ Sbjct: 81 EVCEHIKSSIKTQFLPVIMVTALTEREDRIKGIEAGADDFLSKPVDRLELNTRVRSLIRI 140 Query: 121 QKSKD 125 ++ +D Sbjct: 141 KQLQD 145 >gi|83313243|ref|YP_423507.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82948084|dbj|BAE52948.1| Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Magnetospirillum magneticum AMB-1] Length = 381 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD + K+ L D + V A +A + P+ +++D M Sbjct: 8 TILVVDDTPDNLKLMSGLLKDL-YRVKIANGGEKALAIAASDAPPDLILLDIMMPEVDGY 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ D+ V +L E G + GA ++ KP + + ++ Sbjct: 67 EVCRRLKASRATRDIPVIFLTAMSGSEDEEVGLKMGAVDYITKPITPAVVLARVETHLKL 126 Query: 121 QKSKD 125 + S D Sbjct: 127 KASAD 131 >gi|330503901|ref|YP_004380770.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328918188|gb|AEB59019.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 773 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G+ V A EA E E++ + + +++D +M + + Sbjct: 651 RVLLVEDNPVNQMVAKGMLTKLGYQVLVAGHGGEALEILEQQPV-DLVLMDCNMPVMDGY 709 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++ + L ++ AG N +L KPF RE L + Sbjct: 710 EASRRIRSNGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDAWL 767 >gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 240 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 7/135 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK--ELLPNYLVIDESME- 57 M +++V+ + + + G V A E + P+ +V+D + Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 LE VRQ + + L + G GA+ +L KPF+ L+ + Sbjct: 61 VDGLEICRRVRQSKI---TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSA 117 Query: 117 LPQMQKSKDENQFLD 131 + + + + Sbjct: 118 ILRRVEMMRALSRTE 132 >gi|203284656|ref|YP_002222396.1| response regulatory protein [Borrelia duttonii Ly] gi|201084099|gb|ACH93690.1| response regulatory protein [Borrelia duttonii Ly] Length = 451 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+ D +R+ + G+ VF A+ EA E + E + ++ D M + Sbjct: 1 MSKLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIQNEK-IDAIISDLRMPQIS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + V+ ++ L + + R GA FL KP + E L ++ Sbjct: 60 GEELLKIVK--DRNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRAL 117 Query: 119 QMQKSKDENQFLD 131 + + K + L Sbjct: 118 KKRNDKTQQNVLQ 130 >gi|149921398|ref|ZP_01909851.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149817718|gb|EDM77183.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 477 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD R L D F V A +A + P+ ++ D M G+ Sbjct: 11 RILVVDDESSARSALTELLRDENFEVQSAGDGFKALGRLD-NFTPDVVITDLKMPGMNGI 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +V V + E + + GA+ +L KP + L + + + Sbjct: 70 ALMEKVRERLPEVPVVVMTAFGTVESAVEAIQQGADDYLTKPLHLGQLLVVVERVLGHRA 129 Query: 123 SKDENQFL 130 KDE + L Sbjct: 130 LKDEAKRL 137 >gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 309 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD S GF V ATS A ++ + P+ +++D M G+ F Sbjct: 13 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDIILLDAVMPGMDGFD 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A ++ V V ++ + E ++ +G +L KP N + LR +R Sbjct: 72 TCARLKANASVAQVPVVFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLSNA 131 Query: 122 KSKDENQF-LDA 132 +S + LDA Sbjct: 132 RSAQSARVALDA 143 >gi|114049036|ref|YP_739586.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. MR-7] gi|113890478|gb|ABI44529.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. MR-7] Length = 348 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 56/130 (43%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD + ++ + ++ + + ATS +A + LP +++D M + F Sbjct: 9 TLLVVDDTPDNIQIIHGILSEQ-YTIRAATSGEKALKLASTHPLPELILLDVMMPEMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P+ + + V ++ + D G GA ++ KP + L+ + + Sbjct: 68 ETCRRLKRDPVTSKIPVVFVTAKTDTIDEQTGFELGAVDYISKPISPAVLKVRTQTHLAL 127 Query: 121 QKSKDENQFL 130 + + L Sbjct: 128 SNQARQLEAL 137 >gi|330504989|ref|YP_004381858.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328919275|gb|AEB60106.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 778 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + I + V R + G+ V A + EA E E + + +++D M + F Sbjct: 648 TVLIVEDNAINQLVTRGMLLKLGYRVRTADNGAEALELLRGESV-DAVLLDCQMPVMDGF 706 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 +R +P DV V + AG + +L KP E LR Sbjct: 707 ATCRAIRALPGCADVPVLAITAHSHSGDRERCLAAGMSDYLAKPVKFEELR 757 >gi|298482963|ref|ZP_07001145.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298270935|gb|EFI12514.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1315 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + + + ++ V A+ EA + + P+ +V D M + Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++++ + + + L D + ++G + GA+++L KPF E L +R + Sbjct: 1118 ELCKNIKEDITISHIPIILLTARNDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177 Query: 121 QKSKDE 126 ++S + Sbjct: 1178 RESIKK 1183 >gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] Length = 1618 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 3/120 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +LLV+ + + + V L D GF V A + A + + + + +++D M + Sbjct: 1267 VLLVEDNELNQMVAVELLRDAGFAVDVAGNGERALQLLDGKNY-DVVLMDMQMPVMDGET 1325 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P D+ V + AG N + KP L A+ +++ Sbjct: 1326 ATRRLRADPRHADLPVIAMTANAMEADRQRCFAAGMNDHVAKPIEPSVLWAALARWIRLR 1385 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 6/119 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESME 57 +L+VD +H V + GF V +A S EA E ++ L++D M Sbjct: 1116 RRVLVVDDNHTAATVLSEMLQSMGFHVDQAYSGLEALETLRQATQQQKPYGLLLLDWHMP 1175 Query: 58 GVLEFIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 G+ +R M L + + + M A G + L+KP N L + Sbjct: 1176 GMDGVELAGHIRSMGLAEIPQMLMVTAYGREDVMRAARAQGIEAVLIKPVNASVLFDTL 1234 >gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V AT+ + + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116 >gi|237728026|ref|ZP_04558507.1| DNA-binding transcriptional regulator CpxR [Citrobacter sp. 30_2] gi|226910283|gb|EEH96201.1| DNA-binding transcriptional regulator CpxR [Citrobacter sp. 30_2] Length = 232 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A E + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFDVLVAYDGEQALELLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f [Streptococcus pyogenes] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 243 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 11/128 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDESM 56 +LLV+ R GF V EA A E E P + +++D + Sbjct: 9 RILLVEDEENFRDPLALGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 68 Query: 57 E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 E +R + V V L + I G GA+ ++ KP++ L + Sbjct: 69 PRLDGTEVCTRIR---RSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARL 125 Query: 115 RELPQMQK 122 + + + + Sbjct: 126 KAVLRRSR 133 >gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 415 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 L+ D I+R R G++V EA + EA E +K P+ +++D M G+ F Sbjct: 13 LITDDDIIIRMFAREALEQAGWVVEEAQNGSEACELFQK-CPPDVVLLDVMMPGMDGFAT 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A +R++P G + + DFE + AGA F++KP N L +R + + + Sbjct: 72 CAALRRLPGGEHTPILIMTGLDDFESITKAYDAGATDFIVKPLNAMLLTHRIRYMVRADQ 131 Query: 123 SKDENQFLDA 132 E + A Sbjct: 132 VLQELRESQA 141 >gi|299138655|ref|ZP_07031833.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298599291|gb|EFI55451.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 251 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + R F E + + +V+D M G Sbjct: 12 ILVVDDDREIRELVSSYLKKNGLRVTIAADGRQMRSFLEANTV-DLIVLDIMMPGHDGLV 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF L ++ + + Sbjct: 71 LCRELRS-GKHKAIPVLLLTARSDEMDRIIGLEMGADDYLTKPFAARELLARIKAILRRT 129 Query: 122 KSKDEN 127 + N Sbjct: 130 RMLPPN 135 >gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T17] gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T17] Length = 237 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G V A + + +V+D + G+ F Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L IAG GA+ +L KPFN + L +R L + Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|257877070|ref|ZP_05656723.1| two component transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811236|gb|EEV40056.1| two component transcriptional regulator [Enterococcus casseliflavus EC20] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L V+ + + L + V A ++ + + LV+D + + Sbjct: 2 RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYA-ASGVYDLLVLDIMLPKIDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + L + + + + G AGA+ +L KPF + L +R L + + Sbjct: 61 TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120 Query: 123 SKDENQFLD 131 + L Sbjct: 121 LDYQEDQLA 129 >gi|237711352|ref|ZP_04541833.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454047|gb|EEO59768.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 953 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + D + + A EA KE +V D M + F Sbjct: 705 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 762 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + L + D I G GA++++ KPF+ + L ++ L ++ Sbjct: 763 CKAIRTNQTTSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 822 Query: 123 SKDE 126 + Sbjct: 823 LLRQ 826 >gi|237724302|ref|ZP_04554783.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|265752758|ref|ZP_06088327.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|229437171|gb|EEO47248.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] gi|263235944|gb|EEZ21439.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1328 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + D + + A EA KE +V D M + F Sbjct: 1080 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + L + D I G GA++++ KPF+ + L ++ L ++ Sbjct: 1138 CKAIRTNQTTSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197 Query: 123 SKDE 126 + Sbjct: 1198 LLRQ 1201 >gi|212692453|ref|ZP_03300581.1| hypothetical protein BACDOR_01949 [Bacteroides dorei DSM 17855] gi|212665032|gb|EEB25604.1| hypothetical protein BACDOR_01949 [Bacteroides dorei DSM 17855] Length = 1328 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + D + + A EA KE +V D M + F Sbjct: 1080 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + L + D I G GA++++ KPF+ + L ++ L ++ Sbjct: 1138 CKAIRTNQTTSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197 Query: 123 SKDE 126 + Sbjct: 1198 LLRQ 1201 >gi|251798934|ref|YP_003013665.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546560|gb|ACT03579.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + GF V A EA E P+ +V+D M + Sbjct: 1 MIKVLVVDDEVSISSAIAYALQREGFTVETAGDGMEALEKVAA-FKPDVMVLDVMMPKMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R++ G + L ++ D + G GA+ ++ KPF+ + ++ L + Sbjct: 60 GYEVC-RKLEAGNKPAIMLLTVKNDIVDKVLGLELGADDYMTKPFDIREVVARVKALHRR 118 Query: 121 QKSKDENQ 128 ++ + Q Sbjct: 119 RQIESPEQ 126 >gi|189424148|ref|YP_001951325.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189420407|gb|ACD94805.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 239 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD + + F+ V A E EK + +++D ++G Sbjct: 1 MPQLLIVDDDEEILSLLTKFFSQHHHSVTVAVDGTEMFTALEKNS-FDLIILDVMLKGED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + V L D I G GA+ +L KPFN L ++ + Sbjct: 60 GFSLCRRLRMVSK---IPVIILTAMGDLTDRIVGLEIGADDYLTKPFNARELLARVKAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1829 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1709 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1768 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1769 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWMR 1827 >gi|15601845|ref|NP_233476.1| chemotaxis protein CheY [Vibrio cholerae O1 biovar eltor str. N16961] gi|121585901|ref|ZP_01675694.1| chemotaxis protein CheY [Vibrio cholerae 2740-80] gi|121728512|ref|ZP_01681536.1| chemotaxis protein CheY [Vibrio cholerae V52] gi|153215675|ref|ZP_01950071.1| chemotaxis protein CheY [Vibrio cholerae 1587] gi|153801274|ref|ZP_01955860.1| chemotaxis protein CheY [Vibrio cholerae MZO-3] gi|153827833|ref|ZP_01980500.1| chemotaxis protein CheY [Vibrio cholerae 623-39] gi|227812659|ref|YP_002812669.1| chemotaxis protein CheY [Vibrio cholerae M66-2] gi|254284716|ref|ZP_04959683.1| chemotaxis protein CheY [Vibrio cholerae AM-19226] gi|254850253|ref|ZP_05239603.1| chemotaxis protein CheY [Vibrio cholerae MO10] gi|297579867|ref|ZP_06941794.1| chemotaxis protein CheY [Vibrio cholerae RC385] gi|298499856|ref|ZP_07009662.1| chemotaxis protein CheY [Vibrio cholerae MAK 757] gi|9658542|gb|AAF96988.1| chemotaxis protein CheY [Vibrio cholerae O1 biovar El Tor str. N16961] gi|50872121|dbj|BAD34539.1| cheY homolog [Vibrio cholerae] gi|121549837|gb|EAX59857.1| chemotaxis protein CheY [Vibrio cholerae 2740-80] gi|121629230|gb|EAX61668.1| chemotaxis protein CheY [Vibrio cholerae V52] gi|124114658|gb|EAY33478.1| chemotaxis protein CheY [Vibrio cholerae 1587] gi|124123189|gb|EAY41932.1| chemotaxis protein CheY [Vibrio cholerae MZO-3] gi|148876678|gb|EDL74813.1| chemotaxis protein CheY [Vibrio cholerae 623-39] gi|150425501|gb|EDN17277.1| chemotaxis protein CheY [Vibrio cholerae AM-19226] gi|227011801|gb|ACP08012.1| chemotaxis protein CheY [Vibrio cholerae M66-2] gi|227015738|gb|ACP11947.1| chemotaxis protein CheY [Vibrio cholerae O395] gi|254845958|gb|EET24372.1| chemotaxis protein CheY [Vibrio cholerae MO10] gi|297535513|gb|EFH74347.1| chemotaxis protein CheY [Vibrio cholerae RC385] gi|297541837|gb|EFH77888.1| chemotaxis protein CheY [Vibrio cholerae MAK 757] Length = 125 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A EA +K + ++ D +M + Sbjct: 7 MAKVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKA-RFDVIISDVNMPVMT 65 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 EF+ VR + L E EK G GA +L+KPFN ETL ++ + Sbjct: 66 GFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125 >gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 224 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + +D G++V A E + + +V+D + + Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEG-HYLGDSEPYDAVVLDIGLPKMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + V L + + G AGA+ ++ KPF+ E + +R L + Sbjct: 61 SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 123 SKDENQF 129 +++ Sbjct: 121 GHAQSEL 127 >gi|117926464|ref|YP_867081.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117610220|gb|ABK45675.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 231 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+++LLVD + + + GF S EA + ++ D + G+ Sbjct: 1 MNTILLVDDDKQLCAMLAEYLYEEGFSCDLCHSGTEALNRALQSPYEALVL-DVMLPGIN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F +R++ T+V V L + I G GA+ +L KP N L +R + + Sbjct: 60 GF-DLLRKLRQQTEVPVIMLTARGEETDSIVGLEIGADDYLSKPCNPRVLAARLRAVLRR 118 Query: 121 QKSKD 125 + Sbjct: 119 TGGER 123 >gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1141 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + I R+V + + G VFEA + +A EF + + + +++D M + Sbjct: 790 KRILLVEDNEINRQVAQEILASVGMEVFEAYNGEKALEFLKGNDV-DLVLMDIQMPVMDG 848 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R D+ + + + G N + KPF+ + L + Sbjct: 849 HEATRRIRDQARFKDLPIIAMTAHAMLADIEKSKEVGMNDHIAKPFDPDDLFAVLNRWL 907 Score = 78.7 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 14/141 (9%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPN---YLVIDESMEGVLE 61 L+VD + R + + + G V S EA + + LV+D M + Sbjct: 648 LVVDDNPTSRIILKGMLEYMGLSVTTVKSGAEAIDALHGRRGADAFRLLVVDWRMPEMDG 707 Query: 62 FIAHVRQMPLGT---DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R + ++ + + + G L KP N+ L + E Sbjct: 708 LETAERILKDEAIAVKPPMFMVSAYGNASLVKRTNELGFRGLLFKPVNQSFLFNLVVETL 767 Query: 119 --------QMQKSKDENQFLD 131 + + + E + L Sbjct: 768 GKGMVTLNESMRPEKELERLS 788 >gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 55/138 (39%), Gaps = 11/138 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + GF V + + +E + L++D + G+ Sbjct: 1 MSRILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEED-FDLLILDLMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR++ + + + + D I G GA+ ++ KPF+ + ++ Sbjct: 60 GFEICKKVREV---KNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHM 116 Query: 119 QMQKSK-----DENQFLD 131 + EN+ ++ Sbjct: 117 ARYERLIGSGTPENEIIE 134 >gi|293364634|ref|ZP_06611355.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307702891|ref|ZP_07639839.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316892|gb|EFE57324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623571|gb|EFO02560.1| response regulator [Streptococcus oralis ATCC 35037] Length = 232 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ V A E E K + ++ D M + Sbjct: 3 KTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + + + I G GA+ F++KPF+ L + + + Sbjct: 62 YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRRL 121 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 122 SRGGETEQIE 131 >gi|229513612|ref|ZP_04403076.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae TMA 21] gi|229349489|gb|EEO14445.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae TMA 21] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF + +A E + +++D M + Sbjct: 1 MAHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKS 123 +S Sbjct: 118 TQS 120 >gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603] gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 7 RLLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +L+KPF L+ +R L + Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTKQTI 132 >gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552] gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552] Length = 216 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 44/125 (35%), Gaps = 6/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+++ + + + + +A + +++D + +E Sbjct: 2 ILIIEDEKNISNLLKLELTHANYECDQAFDGESGLNKALNQDY-ELILLDLMLPRINGIE 60 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + L + + G + GA+ +L KPF E L + L + Sbjct: 61 VCRQLRLK---KQTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRV 117 Query: 122 KSKDE 126 ++++ Sbjct: 118 SNQNK 122 >gi|154494827|ref|ZP_02033832.1| hypothetical protein PARMER_03869 [Parabacteroides merdae ATCC 43184] gi|154085377|gb|EDN84422.1| hypothetical protein PARMER_03869 [Parabacteroides merdae ATCC 43184] Length = 1313 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + + + + V EA + EA +++ P+ ++ D M + F Sbjct: 1065 ILVVDDNRDIVWLIKETLSSE-YAVREAFNAEEALALMDQQT-PDLIITDIMMPSMDGFA 1122 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I+ ++ + + + +V + G GA+ +L KPF+ L + L + Sbjct: 1123 LISRIKSDKFTRHIPLIVVSAKVSESEQAEGLDLGADVYLTKPFSSVVLHSVVNRLMANK 1182 Query: 122 KSKD 125 K Sbjct: 1183 KELK 1186 >gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R] gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R] Length = 226 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + GF T A E +E P+ +++D + G+ Sbjct: 3 QKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASRE-QPDLILLDLMLPGMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ V + L + D ++ G +GA+ ++ KPF + L +R + Sbjct: 62 IDICRLIRQESS---VPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLR 118 >gi|42527474|ref|NP_972572.1| sigma-54 dependent transcriptional regulator/response regulator [Treponema denticola ATCC 35405] gi|41818059|gb|AAS12483.1| sigma-54 dependent transcriptional regulator/response regulator [Treponema denticola ATCC 35405] Length = 473 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 2/131 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L++D +R+ D G+ V A + + K+ + + ++ D M + Sbjct: 1 MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEV-DLVITDLKMPEI 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + V V L E + R GA FL KP + E L ++ Q Sbjct: 60 SGEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRALQ 119 Query: 120 MQKSKDENQFL 130 + +N+ L Sbjct: 120 NRALVLQNRAL 130 >gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901] gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901] Length = 1547 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 8/126 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNY---LVIDESMEGV 59 +LLV+ + + + V R + +D G +V A + EA + + + +++D M + Sbjct: 1263 RVLLVEDNPVNQDVARMMLDDVGVVVTTAGNGVEALDALQSAQQWDLYSLVLMDCQMPEM 1322 Query: 60 LEF-----IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + I + + + + + AG + ++ KP + + L + Sbjct: 1323 DGYETTRSIRAGKAGEIYKKIPIIAMTANAMKGDKERCFAAGMDDYISKPIDPQVLEDRL 1382 Query: 115 RELPQM 120 R+ Sbjct: 1383 RKWLPR 1388 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 7/124 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK----ELLPNYLVIDESME 57 S+LL++ + VR++ + +G VF A + C+ LP+ ++ID+ + Sbjct: 1109 KSVLLIEDNKSVRELVYRWLDSWGANVFAAEDGAQGLARCQDLKALNNLPDVVLIDQYLP 1168 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + + + D+ V L + ++ AGA ++ KP R L +++ Sbjct: 1169 DQTGCDLAKQMLGIEGCADLPVLILS-RIAEGELQKFCDAGARGYVAKPLTRAGLVESVK 1227 Query: 116 ELPQ 119 L + Sbjct: 1228 VLLE 1231 >gi|237716479|ref|ZP_04546960.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229444126|gb|EEO49917.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 853 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R + + V + EA KE P ++ D M + Sbjct: 587 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 644 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + ++ G GA+ +L+KPF+ + LR + L Sbjct: 645 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 704 Query: 120 MQKSKD 125 ++ Sbjct: 705 NRELLR 710 >gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 8/132 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDENQFLD 131 +K + L+ Sbjct: 119 SRKVTK--RLLE 128 >gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032] Length = 226 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + + GF T A E +E P+ +++D + G+ Sbjct: 3 QKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASRE-QPDLILLDLMLPGMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ V + L + D ++ G +GA+ ++ KPF + L +R + Sbjct: 62 IDICRLIRQESS---VPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLR 118 >gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 234 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTREGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|323700576|ref|ZP_08112488.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323460508|gb|EGB16373.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 394 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLVD + + + AT A E + P+ +++D M G+ Sbjct: 6 TILLVDDQPENISIMIEALYPL-YTLLAATDGATALERAAGDPRPDLILLDVMMPGMSGH 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P D+ V ++ + G RAGA+ ++ KP + ++ +R + Sbjct: 65 EVCRRLKEDPATRDIPVIFVTSLDAPDDEARGLRAGASDYIAKPISPPVVQARVRAHLDL 124 Query: 121 QKSKDENQF 129 + ++++ Q Sbjct: 125 KLAREQLQR 133 >gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14] gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14] Length = 225 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R G V A S + + +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKDEN 127 + + + + Sbjct: 117 RRGEREATD 125 >gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1461 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1203 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1260 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D + GAN+++ KPF++E L + +L Sbjct: 1261 EMLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1320 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1321 RKLFRERIRQQMENQ 1335 >gi|260584330|ref|ZP_05852077.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC 700633] gi|260157848|gb|EEW92917.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC 700633] Length = 232 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ VF A E E K + ++ D M + Sbjct: 3 KTILLVDDEFEITDIQNRYLAQAGYTVFVAHDGVEGLELF-KNKSIDLIITDIMMPKMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI+ V+ + D ++ + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDFISEVQYLS--PDQPFLFITAKTSEQDKIFGLSMGADDFITKPFSPRELVLRVNNIFR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|170747205|ref|YP_001753465.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653727|gb|ACB22782.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 244 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 13/139 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVL 60 ++ +V+ +R + GF A A + + P+ +V+D + G Sbjct: 5 TTIAIVEDDPDIRALLAGYLEGEGFR-TVALDGGAALDRLLASGVAPHLVVLDWMLPGED 63 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + L + + + G GA+ ++ KPFN L +R + Sbjct: 64 GLSICRRLRESGG---PPIVMLTAKDEDIDRVLGLEMGADDYVSKPFNPRVLLARIRAVL 120 Query: 119 QM------QKSKDENQFLD 131 + Q ++ ++ L Sbjct: 121 RRAHGAGVQAAEAASERLS 139 >gi|162449920|ref|YP_001612287.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161160502|emb|CAN91807.1| sigma-54 dependent DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 451 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R + G+ V EA + + + + ++ D M G Sbjct: 1 MSKILVVDDQRNMRTTLAMMLRGAGYEVDEAADGSQGAD-LGAKGAYDVVLTDLRMGGFD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + V+ + V + E + R GA ++ KPF+ + L + Sbjct: 60 GIGVLRAVK--ESNANTEVIVMTAYGTIESAVEAMRLGAFDYIQKPFSEQELLVKVERAI 117 Query: 119 QMQKSKDENQFLDA 132 Q +K E Q L + Sbjct: 118 QNRKLTGEVQLLAS 131 >gi|160936076|ref|ZP_02083449.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC BAA-613] gi|158440886|gb|EDP18610.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC BAA-613] Length = 219 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G+ EA E + + +++D + GV Sbjct: 1 MIKVLIVDDEKPICDLIDLNLSASGYHCTSVQDGAEALRLIENQ-FFDLILLDIMLPGVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + D+ V ++ + + + G R GA+ +L+KPF+ L + + + Sbjct: 60 GY--DIMSYIRPMDIPVIFITARHEVKDRVKGLRLGADDYLVKPFDVVELVARVEAVLRR 117 Query: 121 QKSKDEN 127 + Sbjct: 118 YNKTERL 124 >gi|315606818|ref|ZP_07881827.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae ATCC 33574] gi|315251483|gb|EFU31463.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae ATCC 33574] Length = 954 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V L +D + +F A + + E ++P+ ++ D M + Sbjct: 691 TRILIVEDNRDVAAYTGSLLSDR-YDLFYAANGKLGVKKAES-IVPDLIITDLMMPEMDG 748 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 HVR+ L + V + + + I G AGA+++L KPFN + L + +L + Sbjct: 749 LELCRHVRKTELISHVPIIVITAKTSEADRIKGLEAGADAYLDKPFNSDELCVRVEKLLE 808 Query: 120 MQKSKDE 126 ++ E Sbjct: 809 QRQLLRE 815 >gi|306833226|ref|ZP_07466355.1| response regulator [Streptococcus bovis ATCC 700338] gi|304424593|gb|EFM27730.1| response regulator [Streptococcus bovis ATCC 700338] Length = 233 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +LLV+ + VR + G+ A + A P+ +++D + Sbjct: 1 MNKTLVLLVEDNSSVRNLMTTTLKAHGYRYLTAPNGDAAILEASSHN-PDIVLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++++ + + + + + I AGA+ +L KPF+ E L +R Sbjct: 60 MDGV-EVIKKIRSWSSMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQ 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1] gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1] Length = 239 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ V + + V A +A +F +E P +++D + + Sbjct: 7 KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEK-PTLILLDWMLPVYDGM 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +DV + L + + + G + +L KPF E L +R + + Sbjct: 66 TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122 Query: 121 QKSKDEN 127 + + Sbjct: 123 LEKMRQQ 129 >gi|307731193|ref|YP_003908417.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585728|gb|ADN59126.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 247 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD +VR + GF V A + ++ P +V+D M + Sbjct: 4 SILVVDDDPVVRNLVSQYLEGRGFKVATLEHGM-ALQSKLRDERPALVVLDIMMPELDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A G D+ V L D + G GA+ +L KPF L +R + + + Sbjct: 63 SALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRRG 122 Query: 123 S 123 S Sbjct: 123 S 123 >gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 224 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ V ++ + G+ V A E + +++D + Sbjct: 1 MK-VLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREAL-EGDYHLILLDIMLPKFD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +R++ D+ V + + E + G AGA+ ++ KPF+ + + + + Sbjct: 59 GMKVLSRIREV---KDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVL 115 Query: 119 QMQKSKDEN 127 + K ++E+ Sbjct: 116 RRYKKEEED 124 >gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3] gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3] Length = 225 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ +R++ F + GF V EA A E E + +++D + + Sbjct: 3 KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELF-AEHEIDLIMLDIMLPEIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ V + L D + + G GA+ ++ KPF+ + L + L + Sbjct: 62 WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|254457487|ref|ZP_05070915.1| two component transcriptional regulator, winged helix family [Campylobacterales bacterium GD 1] gi|207086279|gb|EDZ63563.1| two component transcriptional regulator, winged helix family [Campylobacterales bacterium GD 1] Length = 220 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ F F V +A + E + +++D ++ G+ Sbjct: 1 MKKILMIEDDLELAEILTEYLEQFEFEVITEDDPFKAVSILKLEP-FDLVILDLTLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ + D I GA+ +L KP++ L + + Sbjct: 60 GLEVCEAIRER---QDIPIIISSARSDVTDKIKALELGADDYLPKPYDPRELEARIHSVL 116 Query: 119 QMQKSKDENQ 128 + +K E + Sbjct: 117 RRYAAKSEAK 126 >gi|167033014|ref|YP_001668245.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166859502|gb|ABY97909.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 246 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF+ L + + + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|37679342|ref|NP_933951.1| hypothetical protein VV1158 [Vibrio vulnificus YJ016] gi|320156916|ref|YP_004189295.1| two component response regulator [Vibrio vulnificus MO6-24/O] gi|37198085|dbj|BAC93922.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319932228|gb|ADV87092.1| two component response regulator [Vibrio vulnificus MO6-24/O] Length = 304 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD + K+ L + G++V A S A C+K+ P+ +++D M E Sbjct: 10 ILVVDDTVDNVKLLSQLLQNEGYLVKGALSAKSALRMCQKKK-PDLILLDIMMPEVDGYE 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 +++ P D+ V +L + + + G ++ KPF + +R Sbjct: 69 LCRQLKKDPSTQDIPVIFLSALDHVQDKVRAFQIGGVDYIQKPFEVMEVLARVRTHAGLV 128 Query: 120 --MQKSKDENQFLD 131 + ++N+ L Sbjct: 129 TLQRALIEQNEQLK 142 >gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612] gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612] Length = 234 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+ D + + ++ L GF V +A + EA + + + +++D M Sbjct: 7 KRILIADDNQDICELVEILLTAEGFEVVQAKNGQEAVD--RTDDSIDLIILDVMMPQKSG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +R+ T V + +L + + G G + +L KPF+ L ++ L + Sbjct: 65 YKACSEIREK---TRVPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|299144821|ref|ZP_07037889.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298515312|gb|EFI39193.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1342 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + + V AT+ EA + + N ++ D M + F Sbjct: 1093 TVLVVEDNPDMLTFVVRQLSR-DYTVLTATNGAEALKVLDGN-YVNLVISDVVMPVMDGF 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + I G GA++++ KPF+ E L+ L Q Sbjct: 1151 ELCKTIKSDLNYSHIPVILLTAKTNIQSKIEGMELGADAYIEKPFSVEYLQACASNLIQN 1210 Query: 121 QKSKDE 126 ++ + Sbjct: 1211 REKLRQ 1216 >gi|293372439|ref|ZP_06618823.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292632622|gb|EFF51216.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1342 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + + V AT+ EA + + N ++ D M + F Sbjct: 1093 TVLVVEDNPDMLTFVVRQLSR-DYTVLTATNGAEALKVLDGN-YVNLVISDVVMPVMDGF 1150 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + + I G GA++++ KPF+ E L+ L Q Sbjct: 1151 ELCKTIKSDLNYSHIPVILLTAKTNIQSKIEGMELGADAYIEKPFSVEYLQACASNLIQN 1210 Query: 121 QKSKDE 126 ++ + Sbjct: 1211 REKLRQ 1216 >gi|291523694|emb|CBK89281.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] Length = 231 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ +R + L G+ V A + + + ++ +++D M Sbjct: 1 MYKILIVEDDETIRNGIKTLLELQGYYVDIAVNGVDGLKKFDETYS--LVIMDIIMPLLS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +R+ V + +L + ++ G G + +L+KPF+ L ++ L Sbjct: 59 GIDACKKLREESS---VPILFLTAKSSEIDIMQGFEVGGDDYLVKPFSNMELISRVKALL 115 Query: 119 QMQKSKDEN 127 + + D Sbjct: 116 RRRNVYDRE 124 >gi|322421927|ref|YP_004201150.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320128314|gb|ADW15874.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M18] Length = 715 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD ++R + GF V EA + A E ++L P+ +++D M + F Sbjct: 12 VLVVDDDEMMRDLAVAALEQAGFFVAEAENGRVALEQF-RQLQPDIVLLDVMMPELDGFS 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +P G DV V + D + AGA F+ KP + LR +R + + Sbjct: 71 TCRALRGLPGG-DVPVLMMTGLDDTHAIEKAYHAGATDFITKPIHWAILRHRVRYMLRSS 129 Query: 122 KSKDENQFLDA 132 K+ + + +A Sbjct: 130 KAMRDLRVSEA 140 >gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 227 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ +R R F F V E S E E P+ ++D + G+ Sbjct: 1 MK-ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEK-PDIAILDVMLPGMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + L + + I G + GA+ ++LKPFN + ++ L + Sbjct: 59 GFEVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118 Query: 121 QKSKDEN 127 + +E Sbjct: 119 LEGINEE 125 >gi|325265151|ref|ZP_08131877.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029555|gb|EGB90844.1| DNA-binding response regulator [Clostridium sp. D5] Length = 232 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ +R+ + G+ V++A E E EKE + ++D M + Sbjct: 6 ILIVEDDKEIREGVQIYLQSQGYKVYQAADGVEGLEVMEKEE-IHLAIVDVMMPRMDGIR 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ D V L + + I G GA+ ++ KPF L + + + Sbjct: 65 MTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYR 122 >gi|313680794|ref|YP_004058533.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153509|gb|ADR37360.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 220 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A S A E +++D + GV Sbjct: 4 RVLVVDDDPNLLRLVEANLRARGYAVDTAASGEAALERLRMAGY-ACVLLDLMLPGVDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ DV + + + E+ + GA+ +L+KPF L +R + Sbjct: 63 TV-IREARGFCDVPIVVMSALGEEERKVEALDLGADDYLVKPFGVAELLARVRAAIRRYG 121 Query: 123 SKDENQFLDA 132 + L A Sbjct: 122 VLGPAEGLRA 131 >gi|298385042|ref|ZP_06994601.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298262186|gb|EFI05051.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1312 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + + +++ V A+ EA + K P+ +V D M + Sbjct: 1059 TILVVDDNSDLTDFFSKALSEYFKKVLIASDGVEALQLV-KSYTPDIIVSDVMMPRMNGY 1117 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ + + + L D E I+G + GA+ +L KPF E L +R + Sbjct: 1118 ELCKGIKEDLAVSHIPIILLTARDDKESQISGYKNGADGYLTKPFEIEMLMELIRNRLKN 1177 Query: 121 QKSKDENQFLDA 132 ++ + ++LDA Sbjct: 1178 REYTKK-RYLDA 1188 >gi|297565826|ref|YP_003684798.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850275|gb|ADH63290.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 219 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ VR+ + G+ V EA++ E E+ P+ +++D M G F Sbjct: 7 RVLLVEDDRGVREALKLGLELEGYTVLEASNGPECLRKLEEG--PDAVILDVLMPGGDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ + V V L + E + G + GA+ +L+KP+ L + + + + Sbjct: 65 -GVLREIRRKSSVPVLMLTALDEVEWRVKGLKEGADDYLVKPYALPELVARLEAVLRRTR 123 Query: 123 SKD 125 +D Sbjct: 124 RED 126 >gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ K + V A EA E+ + +++D + + Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKY-DIILLDIMLPKLDGL 71 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + L + D I G GA+ ++ KPFN ++ M+ + + Sbjct: 72 SVCQQIRE---FSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR 128 Query: 121 QKSKDENQF 129 S + + Sbjct: 129 NSSITQKEQ 137 >gi|226315436|ref|YP_002775332.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226098386|dbj|BAH46828.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 1050 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 LL+VD + +V + + V TS EA + ++ D M + Sbjct: 710 RLLIVDDDPVNLQVLEAILPPDEYEVTMVTSGKEALAILGTGEW-DLVISDIMMPQMSGY 768 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ T++ V L + + +G AGAN ++ KP ++ + L + Sbjct: 769 ELTRMIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPIEGMEIKSRIEALTTI 828 Query: 121 QKSKDENQFLDA 132 ++S E L+A Sbjct: 829 KQSVREQLRLEA 840 >gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 242 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 8/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A+ A + L P+ +++D + + Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAA-TTLRPDLVIMDIMLPVMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + V V L D + G AGA+ ++ KPF+ L + L + Sbjct: 72 LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130 Query: 122 KSKD------ENQFL 130 EN+ L Sbjct: 131 DRAKVIAKNSENEKL 145 >gi|149372308|ref|ZP_01891496.1| two-component system, transcriptional regulatory protein [unidentified eubacterium SCB49] gi|149354698|gb|EDM43261.1| two-component system, transcriptional regulatory protein [unidentified eubacterium SCB49] Length = 238 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLKDYLAMNDYNVTHAKNGMEGFEKFKKDDY-DLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +V + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNAEVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124 >gi|260904536|ref|ZP_05912858.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 338 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 ++LV+ ++R+ + F + V E EF + L++D + + Sbjct: 3 IVLVEDDEVIRETTQIGLERFDYTVSAFADGREGYEFVAAHGA-DVLLLDLMLPTMNGAS 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ + + + + D ++ AGA+ +L KPF+ + L +R + + Sbjct: 62 ICRAVRER---STIPIIIISARSDAIDIVQALEAGADDYLTKPFDMQVLNARIRAVVRR 117 >gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 232 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D H + K+ H G+ V A +A + + P+ +++D M + Sbjct: 5 TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLA-TTMKPDIVIMDIMMPKLDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A + DV + L + D I G + G + + KPF+ L ++ + + K Sbjct: 64 EASQKIKMK-VDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSK 122 Query: 123 SKDENQ 128 + E + Sbjct: 123 AVPEKK 128 >gi|83945804|ref|ZP_00958147.1| two-component system response regulator [Oceanicaulis alexandrii HTCC2633] gi|83850807|gb|EAP88669.1| two-component system response regulator [Oceanicaulis alexandrii HTCC2633] Length = 234 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ LVD + + G+ V T A E P+ + D M + Sbjct: 1 MATIALVDDDENILTSVSMFLENEGYNVRTFTDGSAALPHL-TETPPDLAIFDIKMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +++ V +L + G GA+ ++ KPF+ + L ++ + + Sbjct: 60 GL-ELLRRVRQSSNLPVIFLTSKDGEFDEALGLDLGADDYIAKPFSHQLLARRIKAVLRR 118 Query: 121 QKS 123 ++ Sbjct: 119 AQA 121 >gi|327470410|gb|EGF15866.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 234 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 223 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G++V A E F + +++D + + Sbjct: 2 RILIVEDDINLNRQLADALKEAGYVVDTAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120 Query: 123 SKDENQFL 130 ++ + Sbjct: 121 GHSSSEII 128 >gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061] gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V G+ V + + + E+E + +++D + + Sbjct: 5 KILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEES-FDLVLLDVMLPELSGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-Q 121 R T + + ++G GAN ++ KPF+ E L +R ++ Sbjct: 64 EVLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNI 123 Query: 122 KSKDENQ 128 +++E + Sbjct: 124 HAQEEKE 130 >gi|94263690|ref|ZP_01287498.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455889|gb|EAT06048.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 303 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L VD S + K+ + + + V AT +A + LP+ +++D M + Sbjct: 9 TILAVDDSPMNIKILHDIL-NQDYRVIFATGGADALTIA-ADSLPDLILLDIMMPEMDGY 66 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + + ++ D E G GA ++ KP N+ ++ ++ ++ Sbjct: 67 EVCHRLKEDPRTQRIPIIFVTAMTDQEDEAKGLDLGAIDYITKPVNQAVVKARVKNHLEL 126 Query: 121 QKSKDENQFLD 131 ++ +D Q + Sbjct: 127 KRYQDFLQDIA 137 >gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CDC1551A] Length = 234 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G V A + + +V+D + G+ F Sbjct: 5 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L IAG GA+ +L KPFN + L +R L + Sbjct: 64 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 121 >gi|71908618|ref|YP_286205.1| response regulator receiver [Dechloromonas aromatica RCB] gi|71848239|gb|AAZ47735.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain [Dechloromonas aromatica RCB] Length = 361 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + V L + V A S A + P+ +++D M + Sbjct: 7 TILIVDDTPENLSVLGELLQPT-YRVRAANSGRRALQIALGTPTPDLILLDVMMPEMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V ++ E G GA ++ KP + +R ++ Sbjct: 66 DVLTELQASAATRSIPVIFVTAMDGTEDEERGLDHGAVDYITKPIRPSIVLARVRTQLEL 125 Query: 121 QKSK----DENQFLDA 132 + ++ D+N FL+A Sbjct: 126 KAARDILSDQNSFLEA 141 >gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 233 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+++ +R+ + + V A E E + + +++D M + Sbjct: 7 KNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSN-FYDLILLDLMMPKLSG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ +++ + L + + GA+ +L KPF E L +R + Sbjct: 66 EEVCKIIRK---TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALR 122 Query: 120 MQKS 123 + + Sbjct: 123 NKSN 126 >gi|312863278|ref|ZP_07723516.1| response regulator SaeR [Streptococcus vestibularis F0396] gi|322516455|ref|ZP_08069377.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|311100814|gb|EFQ59019.1| response regulator SaeR [Streptococcus vestibularis F0396] gi|322125048|gb|EFX96454.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 232 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ V A E E K + ++ D M + Sbjct: 3 KTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 122 SRGGETERIE 131 >gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + + N+ G+ V + +A E+ K + ++D M + Sbjct: 3 TKILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYM-KNNRVDLALLDVMMPEISG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + V L +V+ I G GA+ ++ KPFN L ++ + Sbjct: 62 FEICKIIREKYMF---PVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLR 118 Query: 120 MQKSKDENQ 128 K + +Q Sbjct: 119 RYKKYNPSQ 127 >gi|299149349|ref|ZP_07042406.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298512536|gb|EFI36428.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 1336 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + +R ++ + V ++ +A E P ++ D M + Sbjct: 1071 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKKALTIIP-EYKPELVISDIMMPEMRG 1128 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ + + V L + + +++G + GA+ +++KPFN L+ + L Sbjct: 1129 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1188 Query: 120 MQKSKD 125 + Sbjct: 1189 NRALLR 1194 >gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] Length = 232 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M S+L+VD + ++ G+ V +A EA + +++D M Sbjct: 1 MKQQSILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTND-IQLVLLDVMMPT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + R ++ V +L + + G GA+ ++ KPF+ L ++ Sbjct: 60 MDGVEVCRRIREKF-NIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|195953641|ref|YP_002121931.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195933253|gb|ACG57953.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + +V+ + ++ + GF V T+ E + E + +PN +++D + G Sbjct: 6 VYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTME-QTIPNIIILDIMLPGYDGVR 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ L D+ + +L + + E I G AGA+ ++ KPF+ + L +R + Sbjct: 65 IAKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNRY 124 Query: 122 K 122 K Sbjct: 125 K 125 >gi|152995117|ref|YP_001339952.1| response regulator receiver modulated metal dependent phosphohydrolase [Marinomonas sp. MWYL1] gi|150836041|gb|ABR70017.1| response regulator receiver modulated metal dependent phosphohydrolase [Marinomonas sp. MWYL1] Length = 331 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LLVD +V R + + + A S +A + EKE + + +++D M + L Sbjct: 10 RILLVDDEPSNLRVLRQVLQAARYRLSFARSGQDALKLVEKEPV-DLILLDIMMPNMTGL 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++Q P + V ++ D G GA +++KP + ++ + Sbjct: 69 EVCERLKQNPATAHIPVIFVTALKDSIDEAKGFEIGAVDYIVKPIVPAIVLARVKTHLSL 128 Query: 121 QKSKD 125 ++ + Sbjct: 129 IRADE 133 >gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ A + EA + + +++D M + Sbjct: 2 KILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRTDPDISLMILDIMMPEMDGM 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 VR++ + + + L + D I G GA+ ++ KPFN + ++ L + + Sbjct: 62 -QVVREVRKDSSLPILMLSAKTDDMDKIKGLLTGADDYVAKPFNPLEVMARVKSLLRRSE 120 Query: 123 ---SKDENQFLD 131 + DE + LD Sbjct: 121 KDMTADEPEILD 132 >gi|319901758|ref|YP_004161486.1| two component transcriptional regulator, AraC family [Bacteroides helcogenes P 36-108] gi|319416789|gb|ADV43900.1| two component transcriptional regulator, AraC family [Bacteroides helcogenes P 36-108] Length = 1361 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LL+V+ +R + +F + + AT+ E + E P+ ++ D M Sbjct: 1104 KTLLIVEDHKDIRLYLKVIFGKE-YNLLFATNGQEGIDTAV-EGQPDLVLCDVMMPVKDG 1161 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +++ + + L +V+ + ++ G GA+ ++LKPF L+ +R L Sbjct: 1162 FECCRELKEGLSTCHIPIIMLTAKVEDDDILHGLELGADDYVLKPFTPGILQAKVRNLIN 1221 Query: 120 MQKSKDEN 127 + Sbjct: 1222 ARVLLKRM 1229 >gi|317504746|ref|ZP_07962706.1| two component system sensor histidine kinase [Prevotella salivae DSM 15606] gi|315664128|gb|EFV03835.1| two component system sensor histidine kinase [Prevotella salivae DSM 15606] Length = 1319 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + +R++ + + + F A E E ++++P+ ++ D M L Sbjct: 1070 TILIVEDNDDIRQLLVTVLSPY-FHTVTAVDGREGLE-VTRDVMPDIIISDVLMPHLSGL 1127 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ + V L + + + G + GA+ ++ KPFN E L L Sbjct: 1128 ELCKMIKEDLSICHIPVILLTAQTALNQELEGLKIGADDYITKPFNNEVLVSRCNNLINS 1187 Query: 121 QKSKD 125 ++ Sbjct: 1188 RRLLQ 1192 >gi|310643413|ref|YP_003948171.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309248363|gb|ADO57930.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa SC2] Length = 236 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD + ++ + V +S E P+ LV+D M G+ Sbjct: 1 MTKIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTN-RPDCLVLDIMMPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + Q+ T++ + + + I G G + FL KPFN L ++ + ++ Sbjct: 60 GL-SLLTQLREFTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRL 118 Query: 121 QKS 123 K+ Sbjct: 119 SKA 121 >gi|264678133|ref|YP_003278040.1| response regulator receiver protein [Comamonas testosteroni CNB-2] gi|262208646|gb|ACY32744.1| response regulator receiver protein [Comamonas testosteroni CNB-2] Length = 173 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ +RK+ R F V E + EA E + P+ +++D M G Sbjct: 51 MKKILIVEDHADIRKLIRMTLEFRDFEVQEVATGDEAWE-VTQRTKPDVVLLDVMMPGKL 109 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 LE ++ D V L + AG AGA+ +L+KPF+ L + L Sbjct: 110 SGLEVCQLIKDSDDLRDTQVIMLTARGSADDRQAGLNAGADEYLVKPFSTLKLLEVIESL 169 Query: 118 PQ 119 + Sbjct: 170 ER 171 >gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum ATCC 33693] gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum ATCC 33693] Length = 224 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + F V + EA E+ E + +V+D + + + Sbjct: 2 RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTY-DLIVLDIMLPKLNGY 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + V L + I G GA+ +L+KPF+ L +R L + + Sbjct: 61 EVVKKLRENKNETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRRK 119 >gi|258514837|ref|YP_003191059.1| response regulator receiver modulated diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] gi|257778542|gb|ACV62436.1| response regulator receiver modulated diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] Length = 314 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 4/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD + KV L + + + ATS A E K P+ +++D M G+ Sbjct: 1 MNKVLIVDDVPVSIKVLGELLKEH-YEILVATSGSRAIEVALKN-QPDLILMDVVMPGMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ L ++ V +L + +I G G +++KPFN+ + ++ Sbjct: 59 GLETCRRLKENTLTAEIPVIFLTAMSESSDVIKGFEVGGQDYVVKPFNKIEVIARVKNHM 118 Query: 119 QMQKSKDE 126 +++KSK++ Sbjct: 119 ELRKSKEK 126 >gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293] gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 8/132 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDENQFLD 131 +K + L+ Sbjct: 119 SRKVTK--RLLE 128 >gi|258404235|ref|YP_003196977.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] gi|257796462|gb|ACV67399.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfohalobium retbaense DSM 5692] Length = 448 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+D KV G+ V A +E + L+ D + + Sbjct: 5 KRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHL-QEGGWDMLITDLKLPDITG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + V + + + GA ++L KP + + L ++ + + Sbjct: 64 LDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVFERS 123 Query: 122 KSKDENQFL 130 + +ENQ + Sbjct: 124 QLLEENQTM 132 >gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 227 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + F A E +E P+ +++D + G + Sbjct: 4 KILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEK-PDLVLLDLMLPGKDGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + V + L + D ++ G AGA+ ++ KPF + L +R + Sbjct: 63 EVCREIR---RTSGVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLRQ 119 Query: 121 QKSKDENQF 129 ++ + Sbjct: 120 SDDGEQERL 128 >gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] Length = 230 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ R F V + E + +++D + G+ Sbjct: 1 MKKILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGG-FDLVILDLMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFNVCRRLREEL---DIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHI 116 Query: 119 QMQKSKDENQF 129 + + Sbjct: 117 ARYEQLTRKEQ 127 >gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 231 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + +++D M Sbjct: 3 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEIELMILDIMMPKRNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 62 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|158424377|ref|YP_001525669.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571] gi|158331266|dbj|BAF88751.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571] Length = 240 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +RK+ GF A S E E C + +V+D + L+ Sbjct: 7 VLVVDDDQEIRKLLARYLLSQGFRTTVAASGRE-MEECLASSRFDMVVLDLMLPDASGLD 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + L + I G GA+ +L KPFN L +R + + Sbjct: 66 LCRALRARSR---LPIILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRA 122 Query: 122 KSKDE 126 ++E Sbjct: 123 TEREE 127 >gi|91202235|emb|CAJ75295.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 271 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ R + N+ G + A + A ++ P+ +++D M + Sbjct: 6 RILIVEDKESNRNILNERINELGHISILAENGLSALAKVREQP-PDIILLDIMMPEMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + H++ + V + D + ++ GA+ +L KPFN L+ + Sbjct: 65 EVLCHLKGNASWRHIPVIMISAIGDMDSIVRCIEKGADDYLTKPFNPVLLKARIDSCLMK 124 Query: 121 QKSKDENQF 129 ++ D+ + Sbjct: 125 KRLHDQEEQ 133 >gi|91218136|ref|ZP_01255085.1| hybrid sensory kinase [Psychroflexus torquis ATCC 700755] gi|91183683|gb|EAS70077.1| hybrid sensory kinase [Psychroflexus torquis ATCC 700755] Length = 366 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 7/139 (5%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M +L+++ + +R+ R + + G VF A + E + KE LP+ ++ D M Sbjct: 1 MRKYNILVIEDTKSIREELRDILSFEGMQVFTAENGQEGIDKA-KEHLPDLILCDIMMPL 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 E A ++ + +L + E + G G + ++ KPF+ + L +++ Sbjct: 60 KNGFEVFATIQNINAIKHTPFIFLTAKATVENIREGMILGVDDYITKPFDIDLLIKSVKS 119 Query: 117 LP--QMQKSKDENQFLDAI 133 + ++ + EN L+ + Sbjct: 120 RLFKEKKRKQFENNKLETL 138 >gi|308185491|ref|YP_003929623.1| two-component system regulatory protein [Pantoea vagans C9-1] gi|308055771|gb|ADO07941.1| two-component system regulatory protein [Pantoea vagans C9-1] Length = 231 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ V + V A E + P+ +++D + G+ Sbjct: 4 KRVLIIEDDADAAGVLEAYLKRENYEVMIAGDGPGGLETAGR-WQPDLILLDIMLPGMNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +A +R+ D V + D I R GA+ +++KP++ + ++ + + Sbjct: 63 TEVLAALRRRD---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119 Query: 120 MQKSKD 125 +S Sbjct: 120 RSQSHA 125 >gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + + GF V A E KE + +++D + V Sbjct: 1 MSKILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEY-DLIILDLMLPEVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VRQ ++ + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFDICRQVRQE---KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHM 116 Query: 119 QMQK 122 + Sbjct: 117 ERYN 120 >gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 227 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + R GF V + L P V+D ++ G E Sbjct: 10 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARR-LRPVACVLDIALPGLAGTE 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R G V +L D + G GA+ ++ KPF+ L +R + + Sbjct: 69 ICRRLRA--AGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRRT 126 Query: 122 KS--KDENQFLDAI 133 ++ + L A+ Sbjct: 127 AGVPAEQPRTLGAV 140 >gi|261410004|ref|YP_003246245.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261286467|gb|ACX68438.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 1045 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LL++D + +V + + V ATS EA + + + ++ D M + Sbjct: 721 TLLIIDDDPVNLQVLEAILPPDEYEVTMATSGKEALAVLDAKEW-DLVISDIMMPQMSGY 779 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ T++ V L + + +G AGAN ++ KP +R + L + Sbjct: 780 ELTRRIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPVEALEIRSRIEALTTI 839 Query: 121 QKSKDENQFLDA 132 +++ E L+A Sbjct: 840 KQTVREQLRLEA 851 >gi|227819020|ref|YP_002822991.1| two-component transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338019|gb|ACP22238.1| two-component transcriptional regulator [Sinorhizobium fredii NGR234] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 6/132 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R V G A + EA + + + ++D M + Sbjct: 1 MLRILVVDDEPHIRDVICFAIERAGMTSVVARNGAEAMMAFRRGNV-DLAILDIGMPEMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V + D + G G + ++ KPF+ L ++ + Sbjct: 60 GLEVCRRIRTESA---LPVLFPSARDDEIDRVVGLEIGGDDYVTKPFSPRELIARVKAIL 116 Query: 119 QMQKSKDENQFL 130 + Q L Sbjct: 117 KRANGTAGEQQL 128 >gi|281418386|ref|ZP_06249406.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|281409788|gb|EFB40046.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum JW20] Length = 363 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD V + D F + AT A + ++ P+ +++D M + F Sbjct: 12 ILIVDDIPEHIDVAVQVLRDSNFKIRVATDGNTALKLIYQQK-PDLILLDIYMPEMDGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118 ++ P ++ V +L D E + G +G +++KPFN L ++ Sbjct: 71 LCRLIKNTPDLKNIPVIFLTSFSDEESIRKGFESGGQDYVVKPFNASELLSRVKTHLMLK 130 Query: 119 -QMQKSKDENQFLDA 132 Q + K+ N+ LD+ Sbjct: 131 CQAESLKEANKELDS 145 >gi|171910558|ref|ZP_02926028.1| putative phytochrome sensor protein [Verrucomicrobium spinosum DSM 4136] Length = 472 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ ++I+ + GF V A E +E LP+ +++D M + + Sbjct: 34 RILVVEDANIIALAMSYALEGAGFHVELAADGEECIVKV-REDLPDLILLDIMMPKMNGI 92 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R D+ V + + A A GA +L+KPFN L + Sbjct: 93 EALKILRADEKTKDLPVIVCSAKDFKTERQAAAELGALDYLIKPFNPADLVRKVSAAL 150 >gi|86147918|ref|ZP_01066223.1| transcriptional regulator CpxR [Vibrio sp. MED222] gi|218710833|ref|YP_002418454.1| transcriptional regulator CpxR [Vibrio splendidus LGP32] gi|85834345|gb|EAQ52498.1| transcriptional regulator CpxR [Vibrio sp. MED222] gi|218323852|emb|CAV20213.1| Transcriptional regulatory protein cpxR [Vibrio splendidus LGP32] Length = 229 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL+D + + + + + GF V EA E E + +++D M + Sbjct: 1 MANILLIDDDTELTGLLKDILSFEGFTVSEANDGYAGLEAINDE--IDLILLDVMMPRLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ + V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GM-ETLKKLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QK 122 + Sbjct: 118 TQ 119 >gi|329924862|ref|ZP_08279811.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp. HGF5] gi|328940359|gb|EGG36686.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp. HGF5] Length = 224 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD +RK+ F G+ V A + EA + E+ P+ +++D +M Sbjct: 1 MHKILIVDDEADLRKLLTDYFEINGYFVMTAKNSREAMQKVEQG--PDLVLLDINMPEEN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + +L ++ IAG RAG + ++LKPF+ L + Sbjct: 59 GLEICERIR---GFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHL 115 Query: 119 QMQK 122 + ++ Sbjct: 116 RREQ 119 >gi|290770180|gb|ADD61939.1| putative protein [uncultured organism] Length = 230 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + ++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ E L + L + Sbjct: 60 GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRR 118 >gi|293401400|ref|ZP_06645543.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305038|gb|EFE46284.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 238 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R+ + G+ V A + E + + + ++D M + Sbjct: 4 TVLVVEDEQGIREAIAIYLKNQGYQVLLAENGKEGLDLIHTNDV-HLAIVDIMMPIMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++ D V +L + + I G GA+ ++ KPF L +R + + Sbjct: 63 TMTM-ELRKNYDFPVIFLSAKSEDIDKINGLNIGADDYVTKPFGSMELLARVRSQLRRYE 121 Query: 123 S 123 Sbjct: 122 Q 122 >gi|288801698|ref|ZP_06407140.1| DNA-binding response regulator/sensor histidine kinase [Prevotella melaninogenica D18] gi|288335740|gb|EFC74173.1| DNA-binding response regulator/sensor histidine kinase [Prevotella melaninogenica D18] Length = 878 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D + +R R + ++ + V EA E K ++P+ ++ D M + Sbjct: 637 VLIIDDNVDIRTYLRSVLSEK-YNVSEAADGKAGLELARK-IVPDIVLSDIMMPVMDGLA 694 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + + V L E+ G GA+++L KPF+ L + L Q + Sbjct: 695 FCQQLKTDKAISHIPVILLTARSLDEQRAEGYEHGADAYLSKPFSLRLLFSRIDNLIQSR 754 Query: 122 KSKDEN 127 K + Sbjct: 755 KKLSKL 760 >gi|16330817|ref|NP_441545.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] gi|1653310|dbj|BAA18225.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] Length = 603 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + + G V S +A + + + +++D M Sbjct: 191 KILVVDDNPSNLDLFFQHLTRKGHAVTTCLSAKDALGLLQSQNY-DLILLDLLMPETNGD 249 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +F+ +++ + V + +FE +I GA FL KPF+ L+ + + Sbjct: 250 QFLEYLKTSVEFQHIPVIIVSALDEFESIIRCIEMGAEDFLPKPFDPVLLKARIGSSLEK 309 Query: 121 QKSKDENQF 129 ++ +D+ + Sbjct: 310 KRLRDQEKL 318 >gi|326388965|ref|ZP_08210547.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206565|gb|EGD57400.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 244 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + G+ V A A + + + +V+D M G Sbjct: 10 RILVVDDDPELRALLTRFLGEHGYAVR-AVDGGRAMDSALQRDPADVIVLDLMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L D + G GA+ +L KPF L + + + Sbjct: 69 AVLRRLRAGGDPTPVIMLTARGDAIDRVLGLEMGADDYLGKPFLPRELVARISAMLRR 126 >gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 234 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|282858981|ref|ZP_06268119.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] gi|282588261|gb|EFB93428.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + ++ + + G+ V A S EA + ++D M + Sbjct: 4 NRILVVDDEQDLCEIMQFNLENEGYQVAVAYSAEEALAR-TDLPTFHLFILDIMMGEMSG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++Q P + ++ +I G GA+ ++ KPF+ L ++ + + Sbjct: 63 FKLAQKLKQDPATNQAAIIFVTARDTENDIITGLTLGADDYMAKPFSVRELILRVKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|282878622|ref|ZP_06287396.1| sensor histidine kinase/response regulator [Prevotella buccalis ATCC 35310] gi|281299257|gb|EFA91652.1| sensor histidine kinase/response regulator [Prevotella buccalis ATCC 35310] Length = 953 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+V+ + V + + ++ A E E L+P+ ++ D M L Sbjct: 703 SVLVVEDNADVARYIGMQIGHE-YQLYFAHDGVEGLEKALS-LMPDLILTDLLMPRKDGL 760 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V + + G AGA+++L+KPF+ + L+ +R L + Sbjct: 761 EMCCEIKMSEVLNHIPVIMITARSTDADKLKGLEAGADAYLVKPFSADELKLRIRNLIRQ 820 Query: 121 QKSKDENQFLDA 132 ++ E L + Sbjct: 821 REVMREKYALSS 832 >gi|237712214|ref|ZP_04542695.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|237726360|ref|ZP_04556841.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|229434886|gb|EEO44963.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] gi|229453535|gb|EEO59256.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 379 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + L + F V A + EA P+ +++D M + F Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 74 EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133 Query: 121 QKSKD 125 +K Sbjct: 134 VAAKR 138 >gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESME 57 M +L+V+ + + G+ V A + EA KE + +++D M Sbjct: 1 MKKNRILIVEDEEKLARTMGDFLKFQGYDVCCAANGREALATFYKERKTLDLILLDIMMP 60 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 E + +R+ +++ V L E ++G GA+ ++ KP+ E +R + Sbjct: 61 DISGYEVLKEIRK---TSNIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIE 117 Query: 116 ELPQM 120 + + Sbjct: 118 AVLKR 122 >gi|121603888|ref|YP_981217.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120592857|gb|ABM36296.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 336 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 8/137 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V ++ G+ V ATS A + ++ +P+ +++D M G+ F Sbjct: 18 VLIVDDVPDNLAVLHDALDESGYTVLVATSGEAALQRA-RQAVPDIVLLDAMMPGMDGFE 76 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 ++ MP + + ++ + E ++A +AG ++ KP + + M Q Sbjct: 77 VARRLKAMPETAHIPIIFMTGLTETEHLVAALQAGGVDYVTKPIKPKEVMARMGVHLQGA 136 Query: 120 ---MQKSKDENQFLDAI 133 Q+++ Q +A+ Sbjct: 137 RRARQEARQAGQARNAL 153 >gi|117923749|ref|YP_864366.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117607505|gb|ABK42960.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 373 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + G+ V A A E + P+ +++D + G Sbjct: 8 RKILIVEDDETSAWLLESFLRSEGYEVILARDGFAAVERYQSAD-PDLIIMDILLPGQDG 66 Query: 62 --FIAHVRQMPLGTD--VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R + D + +L ++ G + F++KPFN L+ + L Sbjct: 67 YAATEQIRAITRNEDSPPPIIFLTAIESDAELARCLDCGGDDFVVKPFNPIILKARIHSL 126 Query: 118 PQMQKSKDENQF 129 + +E Q Sbjct: 127 LERLALAEEKQL 138 >gi|148263562|ref|YP_001230268.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397062|gb|ABQ25695.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 679 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD ++ R +++ EAT+ A +E +P+ +++D M Sbjct: 1 MKANKILIVDDQKFALQMLRDTLAPLHYVIEEATNGASAVSKA-QEFMPDIILMDLVMPE 59 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + ++Q + V + + + ++A AG + ++ KPF+ + L +R Sbjct: 60 MDGVEACRRIKQDMHTATIPVIVITASKEKDNLLAAFAAGIDDYITKPFSDKELLARIRA 119 Query: 117 LPQMQKSKDENQF 129 +++ + Sbjct: 120 NLFKREAIAMMEL 132 >gi|320160764|ref|YP_004173988.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994617|dbj|BAJ63388.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 253 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 57/129 (44%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + + + G+ V A + EA + C ++ P+ +++D M + Sbjct: 27 QTILVVEDEPDTVFLLKQILRMAGYNVLSAVNGYEAIQKCM-DIHPDLILLDLMMPEMDG 85 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + TDV V + + E ++ R G + ++ KPF + ++ + + Sbjct: 86 W-QTYQYLREATDVPVIVISAIHNKEDVVRALRIGMDDYITKPFVNAEVVARVQAVLRRA 144 Query: 122 KSKDENQFL 130 + ++ L Sbjct: 145 RPTKQSDRL 153 >gi|319790077|ref|YP_004151710.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermovibrio ammonificans HB-1] gi|317114579|gb|ADU97069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermovibrio ammonificans HB-1] Length = 452 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 5/118 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D +R V + G V EA++ EA +E P+ ID M + Sbjct: 1 MAKILVADDEKSIRLVLKKYLTSKGHSVIEASNGEEAL-KAIREQKPDVAFIDIKMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R ++ V L E + GA +L KPF+ E + + ++ Sbjct: 60 GLSLLKRV----KEIPVVILTAYGTMEYTVKAMELGAVDYLTKPFSFEEIEEVLSKIL 113 >gi|237716456|ref|ZP_04546937.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1464 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1263 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D + GAN+++ KPF++E L + +L Sbjct: 1264 EMLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1324 RKLFRERIRQQMENQ 1338 >gi|255039089|ref|YP_003089710.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254951845|gb|ACT96545.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 224 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L ++ + + + GF V A + E E P+ +V D M + Sbjct: 1 MATVLFIEDEPALGMIVKDSLTYRGFEVLYAANGVEGLEQFRLH-RPDIVVADIMMPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F V + +L ++ G G N +L KPF+ E L + L + Sbjct: 60 GFTMAEHIRRDDPHVPIMFLTARSQTADVVRGFELGGNDYLKKPFSLEELIVRINALLR 118 >gi|212691339|ref|ZP_03299467.1| hypothetical protein BACDOR_00831 [Bacteroides dorei DSM 17855] gi|212666092|gb|EEB26664.1| hypothetical protein BACDOR_00831 [Bacteroides dorei DSM 17855] Length = 379 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + L + F V A + EA P+ +++D M + F Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 74 EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133 Query: 121 QKSKD 125 +K Sbjct: 134 VAAKR 138 >gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis] gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis] Length = 235 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V++ + +A + E E + + ++D + V F Sbjct: 4 KILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKM-DLAILDVMLPDVDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L +V+ I G GA+ ++ KPFN + ++ + Sbjct: 63 HICQKIRERYFY---PIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQLRR 119 >gi|15642687|ref|NP_232320.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121726722|ref|ZP_01679947.1| transcriptional regulator CpxR [Vibrio cholerae V52] gi|147675245|ref|YP_001218180.1| transcriptional regulator CpxR [Vibrio cholerae O395] gi|227082808|ref|YP_002811359.1| transcriptional regulator CpxR [Vibrio cholerae M66-2] gi|229507260|ref|ZP_04396765.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae BX 330286] gi|229509818|ref|ZP_04399299.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae B33] gi|229516940|ref|ZP_04406386.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae RC9] gi|229527383|ref|ZP_04416775.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae 12129(1)] gi|229606767|ref|YP_002877415.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae MJ-1236] gi|254851228|ref|ZP_05240578.1| transcriptional regulator CpxR [Vibrio cholerae MO10] gi|255744348|ref|ZP_05418300.1| copper-sensing two-component system response regulator CpxR [Vibrio cholera CIRS 101] gi|262158542|ref|ZP_06029657.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae INDRE 91/1] gi|262170064|ref|ZP_06037753.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae RC27] gi|298500492|ref|ZP_07010296.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757] gi|9657287|gb|AAF95833.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630883|gb|EAX63265.1| transcriptional regulator CpxR [Vibrio cholerae V52] gi|146317128|gb|ABQ21667.1| transcriptional regulator CpxR [Vibrio cholerae O395] gi|227010696|gb|ACP06908.1| transcriptional regulator CpxR [Vibrio cholerae M66-2] gi|227014580|gb|ACP10790.1| transcriptional regulator CpxR [Vibrio cholerae O395] gi|229335015|gb|EEO00500.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae 12129(1)] gi|229346003|gb|EEO10975.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae RC9] gi|229353292|gb|EEO18231.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae B33] gi|229354765|gb|EEO19686.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae BX 330286] gi|229369422|gb|ACQ59845.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae MJ-1236] gi|254846933|gb|EET25347.1| transcriptional regulator CpxR [Vibrio cholerae MO10] gi|255737873|gb|EET93266.1| copper-sensing two-component system response regulator CpxR [Vibrio cholera CIRS 101] gi|262021472|gb|EEY40184.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae RC27] gi|262029703|gb|EEY48352.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae INDRE 91/1] gi|297540661|gb|EFH76718.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757] gi|327485164|gb|AEA79571.1| Copper-sensing two-component system response regulator CpxR [Vibrio cholerae LMA3894-4] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF + +A E + +++D M + Sbjct: 1 MAHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKS 123 ++ Sbjct: 118 TQN 120 >gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 227 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 10/133 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LLLVD V + GF + A + EA E E P +V+D + + + Sbjct: 4 TLLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKA-GEKKPALVVLDWMLPEMSGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+M + + + I G GA+ ++ KPF+ L +R + + Sbjct: 63 EVCRELRKMSRMG---IIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRR 119 Query: 121 QK----SKDENQF 129 + ++ + Q Sbjct: 120 MEGLEFTEQQMQR 132 >gi|332531423|ref|ZP_08407327.1| winged helix family two component transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332039092|gb|EGI75514.1| winged helix family two component transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 242 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + FGF V A+ A + + +V+D + G Sbjct: 6 RVLLVDDDESITGLLSDYLAGFGFEVRIASDG-SAMRAALAQDEADLVVLDVMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + L + + G GA+ +L KPF L +R + + Sbjct: 65 VLSRELRRQYARLPIIMLTARAEAYDRVIGLEMGADDYLCKPFEPRELVARIRTVLRR 122 >gi|306819943|ref|ZP_07453594.1| DNA-binding response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551979|gb|EFM39919.1| DNA-binding response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 224 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 5/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ + + + V +A + E E + +++D + + Sbjct: 2 RILLVEDERELSNALVAILTRSNYSVDPVYDGEDALYYLETENY-DAVILDIMIPKIDGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ G + V L + + + + G +GA+ +L KPF + L +R L + Sbjct: 61 EVLKTIRK--EGNKIPVIMLTAKSEIDDRVVGLDSGADDYLTKPFASKELLARLRALTRR 118 Query: 121 QKSKDEN 127 + EN Sbjct: 119 GEQLTEN 125 >gi|302795646|ref|XP_002979586.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii] gi|300152834|gb|EFJ19475.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii] Length = 862 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVL 60 +LLV+ + + +KV L +G +V + EA E + + +++D M G+ Sbjct: 728 KRVLLVEDNLVNQKVASRLLQKYGHVVITVSDGLEAVEALKSDHKAYDLVLMDIQMPGMD 787 Query: 61 EF--IAHVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +R+ + + L AG + +L KPF+ + + +R Sbjct: 788 GLEATRRIRKDELGSGWQKIPIIGLTANAMKGYQDICYEAGMDGYLPKPFDIKQVLSTIR 847 >gi|294777012|ref|ZP_06742470.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294449070|gb|EFG17612.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 379 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + L + F V A + EA P+ +++D M + F Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 74 EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133 Query: 121 QKSKD 125 +K Sbjct: 134 IAAKR 138 >gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] Length = 226 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + + G+ + + + +++D + + F Sbjct: 4 NILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQP-FDAVILDVMLPKLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + V L D I G GA+ +L KP N L +R + + + Sbjct: 63 -EVLKSIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQ 121 >gi|223674577|gb|ACN12984.1| PhoP [Streptomyces clavuligerus ATCC 27064] Length = 175 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V A + E + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDE 126 +E Sbjct: 118 EPEE 121 >gi|206889241|ref|YP_002249148.1| two-component response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741179|gb|ACI20236.1| two-component response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 122 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+VD + R++ + + G+ V EA +A P+ +++D S+ Sbjct: 1 MKTILVVDDNEDSRELVKKILKKHGYEVIEAVDGEDAIAKALA-YRPDLILMDISIPKID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +++ P D + +AG N ++ KP N ++ Sbjct: 60 GYEATRRLKERPDFKDTPIIAFTAHAMRGDQEKALQAGCNGYISKPINVREFPEQIKIYL 119 Query: 119 QMQ 121 + + Sbjct: 120 KEK 122 >gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] Length = 224 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + V+ +R++ + GF E E E P +++D + G+ Sbjct: 2 IFCVEDDSNIRELVIYTLETTGFKARGFEDGKEFLEALALET-PELILLDIMLPGMDGLE 60 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ P D+ V L + + AGA+ ++ KPF L ++ + + Sbjct: 61 LLSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLRRT 120 Query: 122 KSKDEN 127 + ++ Sbjct: 121 QKDTQD 126 >gi|186682208|ref|YP_001865404.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464660|gb|ACC80461.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 371 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 7/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + ++ + + G+ V T+ A + + P+ +++D +M G+ E Sbjct: 11 ILIVDDTLDNLRLLSAMLTEQGYEVRSVTNGSMALIGIQAQP-PDLILLDITMPGMNGYE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P ++ V ++ + + G F+ KPF E + M ++ Sbjct: 70 VCQRLKSNPQTQEIPVIFISALNEVFDKVKAFSVGGVDFINKPFQIEEVVARMEHQLKLC 129 Query: 122 K----SKDENQFLDA 132 + +++N+ L Sbjct: 130 RLQMQLQEQNRRLQE 144 >gi|301059812|ref|ZP_07200706.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [delta proteobacterium NaphS2] gi|300446138|gb|EFK10009.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [delta proteobacterium NaphS2] Length = 246 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + + G+ V A A + E + P+ +V+D + + Sbjct: 8 ILVVEDEAHLAEGLKLNLALKGYDVRIAMDGTSALQTWE-QWRPDLIVLDIMLPEIDGLS 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + L D + + G G + +L KPFN + ++ L Sbjct: 67 VLRKIRLEDERIPILILSARGDPDDRVKGFTYGVDDYLAKPFNLDEFLLRVKRLLTR 123 >gi|297193586|ref|ZP_06910984.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151835|gb|EFH31368.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 184 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ ++ GF V AT+ + + E+ + +++D + G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R ++V V + + + G GA+ ++ KPF+ L +R + + + Sbjct: 61 CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117 Query: 123 SKDE 126 +E Sbjct: 118 EPEE 121 >gi|296133268|ref|YP_003640515.1| response regulator receiver modulated diguanylate cyclase [Thermincola sp. JR] gi|296031846|gb|ADG82614.1| response regulator receiver modulated diguanylate cyclase [Thermincola potens JR] Length = 301 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + + G+ V + +AR F +E P+ +++D + E Sbjct: 8 ILIVEDNPLTANQLKSFLETVGYKVSLCLNAEQARNFLTEET-PDLIILDIILPDTDGYE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + ++ + + + G +AG + ++ KPF E L + + Q Sbjct: 67 LCRWIREETRLRLIPIIFVSAKDGLDDKVVGLQAGGDDYITKPFAMEELLARIEVILQRM 126 Query: 122 KSKDENQFLDAI 133 + E D + Sbjct: 127 RVFHELSMRDEL 138 >gi|288927115|ref|ZP_06421002.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Prevotella buccae D17] gi|288336121|gb|EFC74515.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Prevotella buccae D17] Length = 1343 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 L++V+ + +R RH+F + V + A E+ + + + + +V D M G Sbjct: 1080 RLMVVEDNGDLRFYLRHIFEQE-YEVVDKPDGDAALEYLKSQTV-DLIVSDIMMPGIQGD 1137 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++Q + + V L + + M+ G GA+ F+ KPF+ + L+ +R + Sbjct: 1138 EMCRLIKQNVETSHIPVILLTAKAGRDHMLKGLEGGADDFIAKPFDADVLKAKVRTMIHN 1197 Query: 121 QKSKDE 126 + E Sbjct: 1198 RNRLRE 1203 >gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] Length = 281 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + VF+ + EA E +K + + ++D + V Sbjct: 54 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-VLDLAILDIMLPDVSGL 112 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + L + I G GA+ ++ KPF L ++ + Sbjct: 113 TICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 169 Query: 121 QK 122 K Sbjct: 170 YK 171 >gi|209528024|ref|ZP_03276505.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209491543|gb|EDZ91917.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 254 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC--EAREFCEKELLPNYLVIDESMEG 58 M +L++D + ++ G+ V A +A + L + Sbjct: 1 MPRILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQAL-ALQLLPDLIILDLMLPKVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTGDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|190892751|ref|YP_001979293.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190698030|gb|ACE92115.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] gi|327188375|gb|EGE55592.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 233 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD +R + + GF V A EA+ L + +++D M G ++ Sbjct: 14 LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGID 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +V + L + I G AGA+ +L KPF+ L + + + Sbjct: 73 VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|170693170|ref|ZP_02884331.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170142168|gb|EDT10335.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 237 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + ++++D +R + + GF V + + + + LV+D ME Sbjct: 5 NRIIVLDDEAELRNMLQRFLTGHGFHVRVVADGKQ-LDRYLQREPYDLLVLDLMMEPEDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D + G GA+ +L KPF + L +R L + Q Sbjct: 64 LTICRRLRAEGQTLPILMLTAKGDPVDRVVGLETGADDYLAKPFLPDELVARIRALLRRQ 123 Query: 122 KSKD 125 K Sbjct: 124 KMAA 127 >gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 226 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 1 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 59 GW-QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 Query: 121 Q 121 Sbjct: 118 H 118 >gi|295093355|emb|CBK82446.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL + + + + + V + +A ++ + + +++D M + F Sbjct: 2 RLLLAEDEKALSSALQVILKHNNYSVDAVYNGQDAYDYIMAGVY-DGVILDVMMPKMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + G DV V L + + + I G GA+ +L KPF + L +R + + + Sbjct: 61 TVLSKIRAEGCDVPVIMLTAKAETDDKINGLDLGADDYLAKPFETKELLARIRAITRRK 119 >gi|254881616|ref|ZP_05254326.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|319643000|ref|ZP_07997634.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254834409|gb|EET14718.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|317385365|gb|EFV66310.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 379 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + L + F V A + EA P+ +++D M + F Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 74 EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133 Query: 121 QKSKD 125 +K Sbjct: 134 IAAKR 138 >gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 228 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + G+ + E + E + +++D + Sbjct: 1 MSRILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDW-DAILLDLMLPELN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ + + ++G GA+ +++KPF E L +R + Sbjct: 60 GLEVCRRLRQS---KSTPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVL 116 Query: 119 QMQKSKDEN 127 + +++N Sbjct: 117 RRVDFENDN 125 >gi|156743077|ref|YP_001433206.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] gi|156234405|gb|ABU59188.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] Length = 200 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + G+ V A + + P+ +V+D M G+ F Sbjct: 7 TILVVDDTPANLALLFTGLRRAGYKVLINERGDVALQTAI-NVQPDLIVLDVMMPGMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P D+ V + D + + G RAGA ++ KP N + + + + Sbjct: 66 ETCRRLKADPRTKDIPVILMTALTDAIEEVTGLRAGAVDYITKPINVDVVLARINTHLTL 125 Query: 121 QKSKDENQF 129 +K + Sbjct: 126 RKLYRNLEQ 134 >gi|86358612|ref|YP_470504.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86282714|gb|ABC91777.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 233 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD +R + + GF V A EA+ L + +++D M G ++ Sbjct: 14 LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGID 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +V + L + I G AGA+ +L KPF+ L + + + Sbjct: 73 VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+ D +R G+ A +A E P+ L+ D +M + Sbjct: 4 TVLIADDDPGIRLSVSRFLESEGYCCLMAGDGAQALEMI-HHYQPHLLITDIAMPNMNGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ P + V YL + E+ I R G + +L KPF+ L +R L Sbjct: 63 ELVRQIRQHPSLRLLPVIYLTARTELEERIRAYRTGGDVYLAKPFDLNELAAVVRNLLDR 122 Query: 121 QKS 123 + Sbjct: 123 AQL 125 >gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 232 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+V+ + R+ GF V A SV E + + P+ +V+D + Sbjct: 1 MQRLLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAF-SQDRPDLVVLDVGLPDGT 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + +L + +++ G G + ++ KPF L +R L Sbjct: 60 GFDLCRQIRVENG---TPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|237755616|ref|ZP_04584230.1| alkaline phosphatase synthesis transcriptional regulatory protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692211|gb|EEP61205.1| alkaline phosphatase synthesis transcriptional regulatory protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 219 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + R + G++V A EA F E + +++D + + Sbjct: 2 KILLVEDNLDLNNTIREVLELNGYIVDSAFDGKEALNFAENSSY-DVIILDLMLPDIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G V L + + I G GA+ ++ KPF+ + L +R + + Sbjct: 61 EVLKTIRSKGIYTPVIILTAKNQTKDKITGLDLGADDYVTKPFDVDELLARIRAIGRRAS 120 Query: 123 SKDENQFL 130 ++ ++ L Sbjct: 121 TEKKDIVL 128 >gi|298489943|ref|YP_003720120.1| response regulator receiver modulated diguanylate phosphodiesterase ['Nostoc azollae' 0708] gi|298231861|gb|ADI62997.1| response regulator receiver modulated diguanylate phosphodiesterase ['Nostoc azollae' 0708] Length = 403 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ VR+ L F A + + + LP+ ++ D M Sbjct: 1 MPKILVIEDEESVRENLLDLLQAEDFKTISADNGPIGLDLAISQ-LPDLILCDMMMPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ PL + ++ + G GA+ +L KPF R L A++ Sbjct: 60 GYGVLTALRQEPLTATIPFIFITAKSAKSDFRQGMDLGADDYLTKPFTRSELLSAIKNKL 119 Query: 119 QM 120 + Sbjct: 120 EK 121 >gi|194292783|ref|YP_002008690.1| response regulator in two-component regulatory system, ompr family [Cupriavidus taiwanensis LMG 19424] gi|193226687|emb|CAQ72638.1| response regulator in two-component regulatory system, OmpR family [Cupriavidus taiwanensis LMG 19424] Length = 237 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + ++++D +R + + GF V + + + + LV+D ME Sbjct: 5 NRIVVLDDEAELRNMLQRFLTGHGFRVRAVADGKQ-LDKYLQREPHDLLVLDLMMEPEDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D +AG GA+ +L KPF + L +R L + Q Sbjct: 64 LTICKRLRAEGHTLPILMLTAKGDPMDRVAGLETGADDYLAKPFVPDELVARIRALLRRQ 123 Query: 122 KSKD 125 K Sbjct: 124 KMSA 127 >gi|148240129|ref|YP_001225516.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147848668|emb|CAK24219.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 235 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 5/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD + + + G + A EA ++ + +V+D ++ +E Sbjct: 9 LLIVDDDPKLLQFLLEELSQDGIVCQGANCGAEAL-LLLRQQRFDLVVLDWNLPDFNGIE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R G V L D E + GA+ ++ KPF L +R + Sbjct: 68 ICRRLR--SSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRS 125 Query: 122 KSKDENQFLDAI 133 + + + F + + Sbjct: 126 RYANPDAFAEPL 137 >gi|329954397|ref|ZP_08295489.1| putative transcriptional regulatory protein ResD [Bacteroides clarus YIT 12056] gi|328527665|gb|EGF54658.1| putative transcriptional regulatory protein ResD [Bacteroides clarus YIT 12056] Length = 229 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + N L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM--DISAYNLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASMLKKEKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + + + + I Sbjct: 123 TQQAETERAPEQI 135 >gi|322376033|ref|ZP_08050543.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|331265516|ref|YP_004325146.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|321278983|gb|EFX56026.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|326682188|emb|CBY99804.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 232 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ V A E E K + ++ D M + Sbjct: 3 KTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + + + I G GA+ F++KPF+ L + + + Sbjct: 62 YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRRL 121 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 122 SRGGETEQIE 131 >gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG] Length = 1307 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + G V A + E E E+ +++D M + Sbjct: 1187 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1246 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+MP + + L + +GA+ ++ KP + + L A+ + + Sbjct: 1247 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLRT 1306 Query: 121 Q 121 + Sbjct: 1307 K 1307 >gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + G+ + +A EA E KE + L++D M + Sbjct: 5 MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEVL-KENEVHLLIMDVMMPRLD 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 GIRATLKIREE-SSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRR 122 >gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 279 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 53 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARR-FSPDVVVLDLGLPELDGL 111 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 112 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 168 Query: 121 QK 122 + Sbjct: 169 PR 170 >gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 256 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 1/121 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++ +V + G V A A + + P+ +++D + + Sbjct: 3 RRVLIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSS-QPDLVILDVMLPRLSG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G V +L + E+ + G R G + ++ KPF+ L ++ + Sbjct: 62 LDVCRRMRTAGDRTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNMLSRL 121 Query: 122 K 122 + Sbjct: 122 E 122 >gi|254513978|ref|ZP_05126039.1| adenylate cyclase 1 (ATP pyrophosphate-lyase 1) [gamma proteobacterium NOR5-3] gi|219676221|gb|EED32586.1| adenylate cyclase 1 (ATP pyrophosphate-lyase 1) [gamma proteobacterium NOR5-3] Length = 496 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L VD R++ G V A EA E + +++D M G+ Sbjct: 144 ILAVDDREENRELLARYLTRSGHFVVTAPGGAEALEML-ANADVDVVLLDRMMPGMDGRE 202 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ P V + E D + +I AGA+ +L KPFN L+ ++ + + Sbjct: 203 VLRRIKAEPKLRATPVIMISGEQDMQGIIECIEAGADDYLFKPFNPVLLQARIKAGIERK 262 Query: 122 KSKDENQF 129 + D Q Sbjct: 263 QWHDREQL 270 >gi|170761841|ref|YP_001786289.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408830|gb|ACA57241.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 223 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +RK+ + N G+ EA A + KE + ++ D M + Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDVLYKE-YIDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + + + F G R G + +++KP + + + L + Sbjct: 60 GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119 Query: 121 QKSKDENQ 128 + +E + Sbjct: 120 SQIINERR 127 >gi|154496221|ref|ZP_02034917.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC 29799] gi|150274304|gb|EDN01381.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC 29799] Length = 230 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + G+ + E A E C +E + +++D + G+ + Sbjct: 4 RILIVDDEDKMRSLVAKHARHAGYEIAECADGHAAVERC-REGGVDLVILDIMLPGLDGY 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + +DV V L + + + + G + G + F++KPF+ L + + + + ++ Sbjct: 63 -EALRAIRTFSDVPVLMLSVHGEEQDKVRGFKLGVDDFMVKPFSPRELMYRVAAILKRRR 121 >gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] Length = 247 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++V+ + + R+ G++V EA + KE +P+ L++D + G + Sbjct: 4 RIVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEA-DIRLKEEVPDLLILDWMLPGLSGV 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + + L + + + G GA+ +++KPF+ L +R + + Sbjct: 63 ELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLRR 122 Query: 121 QKSKDENQFLDA 132 K + + L A Sbjct: 123 SKPEKISSQLVA 134 >gi|291551304|emb|CBL27566.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 231 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + + G+ + +A EA E EKE + N L+ID M + Sbjct: 1 MYKILVCDDDREIVEAIEIYLSQEGYQILKAYDGIEALEILEKEEV-NLLIIDVMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRATLKIREKNS-LPIIILSAKSEDTDKILGLNIGADDYVTKPFNPLELVARVKSQLRR 118 >gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon 078 str. F0262] gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon 078 str. F0262] Length = 223 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R+ G+ V A A E + +V+D ++ + F Sbjct: 2 KLLVVEDERELRQSIAEGLRLSGYTVDTAADGEIAEELFFSGSY-DLIVLDINLPKIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V V L + + + G GAN +L+KPF+ E L +R L + ++ Sbjct: 61 TLLQLIRRENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLLRRKQ 120 Query: 123 SKDENQFLDA 132 + E+ L A Sbjct: 121 LQ-EDTVLSA 129 >gi|288925386|ref|ZP_06419320.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] gi|288337857|gb|EFC76209.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] Length = 954 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V L +D + +F A + + E ++P+ ++ D M + Sbjct: 691 TRILIVEDNRDVAAYTGSLLSDR-YDLFYAANGKLGVKKAES-IVPDLIITDLMMPEMDG 748 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 HVR+ L + V + + + I G AGA+++L KPFN + L + +L + Sbjct: 749 LELCRHVRKTELISHVPIIVITAKTSEADRIKGLEAGADAYLDKPFNSDELCVRVEKLLE 808 Query: 120 MQKSKDE 126 ++ E Sbjct: 809 QRQLLRE 815 >gi|262407431|ref|ZP_06083979.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262354239|gb|EEZ03331.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1358 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LLLV+ + R + DF + + EA E +E PN ++ D M Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGGEGERKAIEEN-PNLIISDIMMPKVDG 1163 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + V L + I GA+S++ KPFN + L + +L + Sbjct: 1164 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1223 Query: 120 MQKSKDEN 127 Q+ + + Sbjct: 1224 QQEKRKQE 1231 >gi|242241244|ref|YP_002989425.1| DNA-binding transcriptional regulator CpxR [Dickeya dadantii Ech703] gi|242133301|gb|ACS87603.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 232 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A + + L I + + Sbjct: 1 MNKILLVDDDKELTSLLKELLEMEGFSVVVAHDGEQALSVLDDSIDLLLLDIMMPRKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQR---YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQFLDA 132 D+ Q +A Sbjct: 118 SNWTDQQQAGEA 129 >gi|86749084|ref|YP_485580.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86572112|gb|ABD06669.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 240 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 6/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ R + + V A E + + + +V+D + G Sbjct: 8 ILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRV-DLVVLDVMLPGEDGLS 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR + + L + I G GA+ +L KPFN L +R + + Q Sbjct: 67 LCRRVRASSP---LPIIMLTARGEDVDRILGLEMGADDYLAKPFNPRELLARIRSVLRRQ 123 Query: 122 KSKD 125 Sbjct: 124 SLAQ 127 >gi|29832199|ref|NP_826833.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609317|dbj|BAC73368.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 282 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 9/125 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL++ + + FG V + E + + +++D + + Sbjct: 4 RVLLIEDDETIAEPLAEGLGHFGLTVDHVATGTEGL----RGPYGDVVLLDLGLPDMDGI 59 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+ V + L + + G GA+ +L KPF+ L +R + + Sbjct: 60 DVCRGIRQVSG---VPIVILSARGEEADRVLGLELGADDYLAKPFSMRELVARVRAVTRR 116 Query: 121 QKSKD 125 + Sbjct: 117 TQRAR 121 >gi|86609101|ref|YP_477863.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557643|gb|ABD02600.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 413 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD R + + G+ V EA+S + + + + +++D M + F Sbjct: 34 VLVVDDERSQRLLVCYALEREGYQVLEASSGEACLQLAAQHPV-DMVLLDAVMPDLDGFE 92 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ---- 119 R +D+ + + D + AGA+ ++ KP L+ +R L Q Sbjct: 93 CCRRLHAQNSDLPILIVTALEDESCVDEAFAAGASDYISKPIRWAVLKRRIRHLIQASQA 152 Query: 120 MQKSKDENQFLDA 132 + ++ NQ L+A Sbjct: 153 QRHLRELNQALEA 165 >gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005] gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes] gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005] gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2 [Streptococcus pyogenes] gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes] gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes] gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes] gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes] gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes] gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes] gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes] gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes] gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes] gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes] gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes] gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes] gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes] gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes] gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes] gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes] gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes] gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes] gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes] gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes] gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes] gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes] gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes] gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes] gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes] gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes] gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes] gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes] gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes] gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes] gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes] Length = 228 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 236 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R+ + + G+ VF A + E E +E + V+D M + Sbjct: 4 TILVVEDEKGIREAIQIYLKNQGYHVFLAENGQEGLEIANRET-IHLAVVDIMMPVMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + D + +L + + I G GA+ ++ KPF L +R + + Sbjct: 63 TMTMEIRKKY-DFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYE 121 Query: 123 S 123 Sbjct: 122 Q 122 >gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] Length = 233 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L+VD + ++ G+ VF+A + EA K+ + +++D M G+ L Sbjct: 5 NVLVVDDEKEIAELVEIYLVSDGYKVFKAYNADEAL-LIMKQEEIHLVLLDVMMPGMNGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 ELCRKIRES---SNIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120 Query: 121 QKSKDEN 127 + N Sbjct: 121 YTQLNPN 127 >gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1142 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL D + D GF + AT+ EA E +++D M + Sbjct: 1021 KKLLLADDDMRNIFALSAVLEDAGFSIEIATNGKEAINKLEDYPEIELILMDVMMPEMDG 1080 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+P ++ + + + AGAN ++ KP + + L ++ Sbjct: 1081 IEATRRIRQVPRWANIPIIAVTAKAMQGDREQCLEAGANDYISKPVDVDKLLSLIKVWL 1139 Score = 73.3 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 5/108 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LLL++ I GF V A+S +A E P +++D + + Sbjct: 749 RLLLIEDDTIFAADMASKAQGSGFEVVIASSGRQALEMV-TGFDPTAIILDMHLPDMSGE 807 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108 + ++ + V+ + F+ + GA F+ KP + Sbjct: 808 EVLKALKNDSRTRLIPVHTVSSGDYFD--EEMIKNGAIGFMQKPVDER 853 Score = 64.4 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 3/85 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ K V A S EA + + + +++D + + Sbjct: 872 QRILLIEDDAYQSKYLGDFLAGNNIFVLYAYSAAEALSLLGTDRV-DGIILDIRLADMNG 930 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEV 84 + +++ P + + V E Sbjct: 931 LDLLDTIKENPQWSAIPVVVNTAED 955 >gi|237734182|ref|ZP_04564663.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|229382742|gb|EEO32833.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 218 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+V+ + ++ + +D G+ A A E E + +++D + Sbjct: 1 MNKILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYN-QFDLILLDIMLPEIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++R + + V +L + D + + G + GA +++KPF L + + Sbjct: 60 GYELMEYIRPLE----IPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVL 115 Query: 119 QMQK 122 + Sbjct: 116 RRYH 119 >gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 229 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + F + +A E +K + ++D + G+ Sbjct: 7 RILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDY-DLFILDIMLPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R T V +L + G G + +L KPF L +R L + Sbjct: 66 ELCRRLRS---FTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRR 122 Query: 121 QKSKDE 126 + E Sbjct: 123 GSGQME 128 >gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] Length = 253 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ + G+ V+ A A + + P+ +++D + G+ Sbjct: 19 QRILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAI-MLARTIRPDLIILDLMLPGIDG 77 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + L + ++A + GA+ +++KPF L + L + Sbjct: 78 RDVCRLIRK---WSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLR 134 Query: 120 MQKSKDENQFLDA 132 L A Sbjct: 135 RSAETTAGNVLTA 147 >gi|218886556|ref|YP_002435877.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757510|gb|ACL08409.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 491 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D +R R + D GF V EA S + +E P+ + +D M G+ Sbjct: 4 RILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARET-PDLVFLDIWMPGMDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + D+ V + E + R GA+ F+ KP + E + A + + Sbjct: 63 AVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYGD 122 Query: 123 SKDENQFL 130 + EN+ L Sbjct: 123 LRRENEAL 130 >gi|218261685|ref|ZP_03476420.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM 18315] gi|218223865|gb|EEC96515.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM 18315] Length = 1304 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++V+ +R + + V+ A +A E + LP+ +V D M + F Sbjct: 1055 TVMIVEDEPELRNYLKDELSGSFKEVYVAEDGRQALEMIQA-KLPDLVVSDVMMPYMNGF 1113 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L D E + G + GA+ ++ KPF+ L +R + Sbjct: 1114 ELCRRIKSDVGISHIPVILLTARTDNESTVQGYKLGADMYVPKPFDLGFLLAVLRNQLKS 1173 Query: 121 QKSKDENQFLDA 132 ++ N++ +A Sbjct: 1174 REIIR-NRYKEA 1184 >gi|328952445|ref|YP_004369779.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] gi|328452769|gb|AEB08598.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + + D GF V A A + E+E P+ + +D ++ G+ Sbjct: 3 RTILVVDDEPPILQTLSGILQDEGFEVLTAQDGETALKVVEEET-PDLVFLDIALPGMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V + E + R GA F+ KP + + + +R +M Sbjct: 62 LEVLRHLKEQQPLTPVVMISAFGSVENAVKATRWGAYDFIEKPPHADKIIVTVRNALEMS 121 Query: 122 KSKDENQFL 130 + +EN L Sbjct: 122 RLTEENLQL 130 >gi|325281460|ref|YP_004254002.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] gi|324313269|gb|ADY33822.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] Length = 229 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + + + GF A E + + ++D M F Sbjct: 6 KILLAEDDTNLGMLLKEYLRAKGFETVLCEDGEVAYEAFLNQP-FDICILDVMMPKKDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ- 121 + +++ + +L + E ++ G + GA+ ++ KPF+ E L + + + Sbjct: 65 TLAKEIRQINSEIPIIFLTAKNMKEDVLEGFKLGADDYMSKPFSMEELLLRIEAVLRRST 124 Query: 122 --KSKDENQ 128 K +DE + Sbjct: 125 GLKPEDEQE 133 >gi|315224461|ref|ZP_07866288.1| response regulator [Capnocytophaga ochracea F0287] gi|314945482|gb|EFS97504.1| response regulator [Capnocytophaga ochracea F0287] Length = 251 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + GF V A + E E +KE + ++D M Sbjct: 17 KHILLVEDDPNFGTVLKDYLVMSGFDVTLAKNGMEGFEKFKKETY-DMCILDVMMPYKDG 75 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + +L E +I G R+GA+ +L KPF+ E L +R + Q + Sbjct: 76 FTLAKEIREKDEKIPIIFLTARTMREDVIKGYRSGADDYLNKPFDSEILLMKIRSILQRK 135 Query: 122 KSK 124 + Sbjct: 136 NIE 138 >gi|294777472|ref|ZP_06742923.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448540|gb|EFG17089.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1328 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + D + + A EA KE +V D M + F Sbjct: 1080 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + L + D I G GA++++ KPF+ + L ++ L ++ Sbjct: 1138 CKTIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197 Query: 123 SKDE 126 + Sbjct: 1198 LLRQ 1201 >gi|289641928|ref|ZP_06474083.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] gi|289508228|gb|EFD29172.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] Length = 1215 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 2/130 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D + +G V A + +++D M + Sbjct: 1086 RRILVIDDDVRNVFAITSILELYGLTVIHAPDGRMGIDILLATDGIELVLVDVMMPEMDG 1145 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+MP + + + + AGA+ ++ KP + + L +R+ Sbjct: 1146 YATMTAIREMPRFGALPIIAVTAKAMPGDRQKCLAAGADDYVTKPVDTDKLLACIRQRLT 1205 Query: 120 MQKSKDENQF 129 QK D N Sbjct: 1206 RQKPDDRNTR 1215 >gi|261251935|ref|ZP_05944509.1| chemotaxis regulator CheY [Vibrio orientalis CIP 102891] gi|260938808|gb|EEX94796.1| chemotaxis regulator CheY [Vibrio orientalis CIP 102891] Length = 119 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A +A + ++ D +M + Sbjct: 1 MTKILAVDDSVSIRQMVSHTLRDAGYDVETANDGRDALSKVTAGK-FDVVISDVNMPNMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R+ P + + L E +K G AGA +L+KPFN +TL ++ + Sbjct: 60 GFELVKALREKPQYKFIPILMLTTETSTDKKQQGKSAGATGWLVKPFNPDTLLKTLKRVI 119 >gi|257457919|ref|ZP_05623078.1| acetoacetate metabolism regulatory protein AtoC [Treponema vincentii ATCC 35580] gi|257444632|gb|EEV19716.1| acetoacetate metabolism regulatory protein AtoC [Treponema vincentii ATCC 35580] Length = 456 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 2/131 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D +R+ + D G+ V A + + E + + ++ D M GV Sbjct: 1 MKFKILVIDDEKNIREGLQMALEDEGYEVLTAEDGTDGLQKALSE-VVDLVITDLRMPGV 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R V V L E + R GA FL KP + + L ++ Q Sbjct: 60 GGQEILRRVTSETPGVPVIVLTGHGTVEAAVEAMRMGAYDFLTKPLDLDRLSLLVKRALQ 119 Query: 120 MQKSKDENQFL 130 ++ +++ L Sbjct: 120 NRELVLQHREL 130 >gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1778 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ + + G+ + A +A + + E PN +++D M G+ Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSES-PNLILMDIQMPGIDGLE 1719 Query: 64 A--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +RQ+P T V + L AGAN ++ KP + L ++E+ Sbjct: 1720 AINRIRQIPTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1776 >gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 224 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|254254582|ref|ZP_04947899.1| Response regulator [Burkholderia dolosa AUO158] gi|124899227|gb|EAY71070.1| Response regulator [Burkholderia dolosa AUO158] Length = 246 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E R + + P+ +V+D + G Sbjct: 7 VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLD-DGAPDLIVLDLMLPGEDGLA 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M +LLVD + +V + + + A + A E +KE P+ +++D + Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKES-PDLVILDVMLP 59 Query: 58 --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 E +R+ + V + L + + G GA+ +L+KPF+ L ++ Sbjct: 60 LIDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVK 116 Query: 116 ELPQMQKSKDE 126 L + K++ Sbjct: 117 ALLRRSFDKEQ 127 >gi|330995652|ref|ZP_08319550.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paraprevotella xylaniphila YIT 11841] gi|329574711|gb|EGG56272.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paraprevotella xylaniphila YIT 11841] Length = 232 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + + G+ V A S EA + + L++D M + F Sbjct: 6 RILVVDDEEDLCDILKFNLENEGYEVETANSAEEALKM--DLAKFHLLLLDVMMGEISGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q+ D+ + +L + G GA+ ++ KPF+ ++ ++ + + Sbjct: 64 KMAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVLRR 123 Query: 121 QKSKD 125 + Sbjct: 124 TAPQQ 128 >gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291] gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291] Length = 247 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + ++ +V+D M G+ Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 77 GF-ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 135 >gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K+ R GF V AT E + K + +++D + + Sbjct: 1 MKKILIVEDDLTIAKLQRDYLEVKGFEVDIATDGVEGLDKI-KNNSYDLVILDIMLPKLH 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + D V + + + I G GA+ ++ KPF+ L + + Sbjct: 60 GY-NVMKSIQDEKDFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHIKN 118 Query: 121 QKSKD 125 + Sbjct: 119 YERLK 123 >gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 240 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 6/111 (5%) Query: 14 RKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMPL 71 R+V R G V EA P+ +V+D + G+ VR Sbjct: 16 REVLRRYLTRDGHDVLEAADGPTGLRLVRSHH-PDLIVLDLMLPGMDGLQVCREVR---R 71 Query: 72 GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V V L + G GA+ +++KPF+ L + + Q + Sbjct: 72 TSTVPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQRSR 122 >gi|94500275|ref|ZP_01306808.1| CheY-like receiver protein [Oceanobacter sp. RED65] gi|94427574|gb|EAT12551.1| CheY-like receiver protein [Oceanobacter sp. RED65] Length = 120 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ G V EA+ EA + + + + + ++ D +M + Sbjct: 1 MAKILAVDDSASMRQMVSFTLKGAGHDVLEASDGAEALKIAQGQAV-DLVLSDVNMPNMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E ++RQ+ + L E +K + G AGA +++KPFN + L ++++ Sbjct: 60 GIELCKNLRQLSSYKFTPILMLTTESAGDKKMEGKSAGATGWIVKPFNPDQLLSTIKKVL 119 >gi|150017893|ref|YP_001310147.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904358|gb|ABR35191.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + +V + G +VFEA + E E+ + P+ +V+D + + Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFER-INPDLIVLDLMLPDMTG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + VR+ V + L ++D + +I+G GA+ ++ KPF+ L + + + Sbjct: 64 EEICSIVRKRSR---VPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFR 120 Query: 120 MQKSK 124 + Sbjct: 121 RLNEE 125 >gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51] gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D + + + GF V A K+L P+ +++D M G+ F Sbjct: 8 KILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLA-KQLHPHLVILDIMMPGMDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ +V + L + + E + G GA+ ++ KPF+ E L + + Sbjct: 67 EVCRMLKKSE---NVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRN 123 Query: 121 Q 121 Q Sbjct: 124 Q 124 >gi|307825601|ref|ZP_07655819.1| response regulator receiver modulated diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307733487|gb|EFO04346.1| response regulator receiver modulated diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 1640 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + +V L + V + + A + + P+ +++D M + Sbjct: 1344 TILIVDDTRVNLEVLALLLTQ-DYQVKVSGNGQRALDIAQCAPHPDLILLDVRMPVMDGY 1402 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ PL D+ V ++ D E G + GA ++ KP + + + Sbjct: 1403 EVCQRLQENPLTCDIPVIFVTAAFDQESETYGLQLGAADYISKPISPGITLMRVHNQLLI 1462 Query: 121 QKSKDENQFLD 131 ++ K E + + Sbjct: 1463 KRHKKELKRIA 1473 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 3/118 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL V+ +R++ + G V AT+ EA +K +++D M + F Sbjct: 1116 LLFVEDDLAIREMMPDILGYEGIRVDLATNGAEAIAMIDKNDY-AMVLMDCQMPVMDGFE 1174 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R P D+ + + V E G + KP + E + + Sbjct: 1175 ASRIIRADPRFADLPIIAMTGNVMAEDRKRCLANGMTDHICKPIDWEQFFPTLTRWVK 1232 >gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMYG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|288802394|ref|ZP_06407834.1| putative two-component system sensor histidine kinase/response regulator hybrid [Prevotella melaninogenica D18] gi|288335361|gb|EFC73796.1| putative two-component system sensor histidine kinase/response regulator hybrid [Prevotella melaninogenica D18] Length = 1356 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LL VD + + + R F D + V + S A + + + ++ D M G+ Sbjct: 1079 TLLFVDDNEDLHQYIRMAFADQ-YHVVDVESGEAALNYLAENGECDIVISDVMMPGMQGD 1137 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ + + V L + + MI G GA+ ++ KPF+ L + + + Sbjct: 1138 ELCRRIKENKETSWLPVILLTAKAGRDFMIEGLDLGADDYIAKPFDSAILASKIASMLKN 1197 Query: 121 Q 121 + Sbjct: 1198 R 1198 >gi|256838887|ref|ZP_05544397.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] gi|256739806|gb|EEU53130.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] Length = 622 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D S +R RH+F + V EA + E E E P++++ D M Sbjct: 368 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 425 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +P V V L +V+ E +IAG GA+ ++ KPF+ E LR + L + Sbjct: 426 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 485 Query: 120 MQKSKDENQF 129 + DE + Sbjct: 486 RR---DEMRR 492 >gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM 16992] gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM 16992] Length = 242 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 8/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A+ A + L P+ +++D + + Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAAT-LRPDLVIMDIMLPVMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + V V L D + G AGA+ ++ KPF+ L + L + Sbjct: 72 LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130 Query: 122 KSKD------ENQFL 130 EN+ L Sbjct: 131 DRAKVIAKNSENEKL 145 >gi|307153836|ref|YP_003889220.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306984064|gb|ADN15945.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 472 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD ++ + G+ + +A + A + LP+ +++D M + Sbjct: 12 NILIVDDQANNLRILSEILAKKGYKIRKAINANSALKAVYS-TLPDLILLDIRMPEMDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ +++ + +L + + + G ++ KPF L + + Sbjct: 71 QFCERIKADAQTSEIPIIFLSALDEVFSKVKAFQVGGVDYITKPFQEAELMARIENQLII 130 Query: 121 QKSKDENQ 128 Q+ K + Q Sbjct: 131 QRQKKQLQ 138 >gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956] Length = 229 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A + +A + +++D M + Sbjct: 1 MK-ILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+ + + + L + I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDEN 127 +++ N Sbjct: 119 SENQVTN 125 >gi|262282112|ref|ZP_06059881.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] gi|262262566|gb|EEY81263.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] Length = 229 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 1/129 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + +V G+ V + EA + N +++D M + Sbjct: 1 MMRILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTY-NVIILDIMMPIMT 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A G V L + + + G AGA+ +L KPF+ + L +R + + Sbjct: 60 GLEALKEIRATGNTTHVIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMARR 119 Query: 121 QKSKDENQF 129 + Q Sbjct: 120 ADNYSPVQL 128 >gi|262276850|ref|ZP_06054643.1| protein PetR [alpha proteobacterium HIMB114] gi|262223953|gb|EEY74412.1| protein PetR [alpha proteobacterium HIMB114] Length = 226 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L++D +R+ + F V A +A+ + L + L++D M G Sbjct: 6 KHILIIDDEEGIREPLKEYLESENFFVSTAKDAEDAKNKIQL-LEFDLLIVDIMMPGQSG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE +R+ D + +L + I G GA+ ++ KPF + L ++ + + Sbjct: 65 LELTKEIRKD---KDTPIIFLTAMGESASRIHGLETGADDYVPKPFEPKELVLRIKNILK 121 Query: 120 MQKSKDENQFL 130 KS E L Sbjct: 122 RVKSLKEGTHL 132 >gi|255531222|ref|YP_003091594.1| ATPase [Pedobacter heparinus DSM 2366] gi|255344206|gb|ACU03532.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1370 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 9/130 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + VR+ F F + +A + + E E++P+ ++ D M + Sbjct: 1119 LLIVEDNQDVRQFIAAHFEAE-FEIHQAENGLKGMELA-TEIIPDIIISDVMMPEMDGIT 1176 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 + ++ + V V L I G GA+ ++ KPFN L + L Sbjct: 1177 LCSKIKSDTRTSHVPVILLTARTPLVYKIEGYETGADDYITKPFNLNMLEARVWNLLDSR 1236 Query: 120 ---MQKSKDE 126 ++ + E Sbjct: 1237 LKLRERYRKE 1246 >gi|227824850|ref|ZP_03989682.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226905349|gb|EEH91267.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 226 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL + + + G+ V + EA E ++ + L+ D M Sbjct: 2 NILLAEDEKAMSMAISAVLTHSGYTVDTVQNGAEAVEAAAQKPY-DCLIFDIMMPIKDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A G + +L + + + I G AGA+ +L KPF L +R + + ++ Sbjct: 61 TALSEIRQSGNETPAIFLTAKSEVDDRIMGLDAGADDYLTKPFAMGELLARIRSMTRRRQ 120 Query: 123 SKDEN 127 E+ Sbjct: 121 KDRED 125 >gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M+ + V+ + ++ + G+ V A + + E ++E + +++D ++ Sbjct: 1 MNKICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQES-FDLVLLDVTLPDGS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ ++ V +L D ++ G GA+ ++ KPF L M + Sbjct: 60 GYEICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVL 119 Query: 119 QMQKSKD 125 + K Sbjct: 120 RRAGKKQ 126 >gi|281419285|ref|ZP_06250301.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|281407151|gb|EFB37413.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 231 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + G+ V +A + +A + E+E + +++D M + Sbjct: 5 NILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEK-IHLVLMDVMMPELDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A V+ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 SATVKIREEL-NIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQFRR 120 >gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory protein (C-terminal) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 224 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + + + + GF + E EK LP+ +++D + G Sbjct: 1 MK-ILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKN-LPDGIILDLMLPGIG 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ ++ + + + + ++ G GA+ ++ KPFN L +R + Sbjct: 59 GMDLCKRIK--EKYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVT 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|161899047|ref|YP_198017.2| response regulator PleD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 458 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + V A EA + K+ P+ +++D M + F Sbjct: 4 RILVVDDVPSNVKLLEARLKAEYYTVIVAHDSEEAIDLVAKQ-QPDIILLDIMMPKINGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ PL T + + + D + G AGA+ FL KP + L ++ L ++ Sbjct: 63 KVCKNLKSTPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPIDETALSARIKSLTRL 122 Query: 121 QKSKDENQF 129 + DE + Sbjct: 123 KMVIDELRL 131 Score = 76.4 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + ++ ++ EA E + ++ D Sbjct: 158 NILVVDEDIFQAEQIHNVLKQRFKLINILNDPMEAL-KVGIEDNYDLIISDMQFSETDGL 216 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + L + + ++ GAN +L P + L + + Sbjct: 217 RLCSEFRSKVETRYTPILILSEDYNKNNLVKALDVGANDYLTVPLDESELIARVNLQVKR 276 Query: 121 QKSKDENQF 129 ++ +D + Sbjct: 277 KRYQDALRM 285 >gi|89519308|gb|ABD75785.1| putative signal transduction histidine kinase [uncultured bacterium] Length = 1323 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + G V +A E ++ + +++D M + Sbjct: 1204 KTILMVDDDMRNVFALSSILEEKGMQVLIGEHGQDAMELLDQNPDIDLVLMDIMMPEMDG 1263 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ P + + L + AGAN +L KP + + L +R Sbjct: 1264 YEAMRQIRQQPKFKTLPIIALTAKAMKGDRQKCIDAGANDYLSKPVDTDKLLSLLRVWL 1322 Score = 93.3 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 6/112 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ K+ L + GF A + + +P+ +++D ++ G+ Sbjct: 938 LLIIEDDPNFAKILFDLAREKGFKGLIAGDGAAGLQLAY-QYIPSAILLDIALPGMDGWM 996 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + ++Q P + V+++ + + + GA +L KP ETL A Sbjct: 997 VMEKLKQNPETRHIPVHFISVYAQS---LKAMKMGAVGYLTKPVTLETLDEA 1045 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 7/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 LL+V++ + L + + + +A K + +V+D + Sbjct: 1058 KKLLIVENDETTSQGMLELLSGADVDILTTQTGEDAYTLL-KSDEFDGMVLDLGLADISG 1116 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELP 118 E + +R + + V + + A S ++K +++ L + Sbjct: 1117 FELLERIRDDTTMSSLPVIVYTAKDLTKDEEMKLTKHAESIIIKGVKSQDRLLDEVTLFL 1176 Query: 119 QMQKS---KDENQFL 130 ++ + + Q L Sbjct: 1177 HRVEADLPEAQQQKL 1191 >gi|45657399|ref|YP_001485.1| chemotaxis response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828107|ref|NP_712604.2| chemotaxis response regulator CheY [Leptospira interrogans serovar Lai str. 56601] gi|45600638|gb|AAS70122.1| chemotaxis response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293385954|gb|AAN49622.2| chemotaxis response regulator CheY [Leptospira interrogans serovar Lai str. 56601] Length = 120 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD S + RK+ ++ F + EA + + + + +V D +M + Sbjct: 1 MKRILIVDDSAVFRKILSLHLSNSSFDILEAVDGQDGLDKL-QNDKVDLIVSDMNMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F+ +++ P + L E E G AGA ++L KPF+ E L + +L Sbjct: 60 GITFVKEIKKDPKNKFTPIIMLTTESQSEVKNEGIAAGARAWLTKPFSPEELVQTIHKLL 119 >gi|323136350|ref|ZP_08071432.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322398424|gb|EFY00944.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 256 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD +R + + G++V A + EA E ++L + +V+D M G Sbjct: 23 ILVVDDDKRIRTLLSRYLANEGYLVSSAANAQEASERL-RDLAFDLIVLDVMMPGESGKQ 81 Query: 62 FIAHVRQM-PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +R+ + L + + G AG + +L KPF+ L + + + Sbjct: 82 FAARLRESGEPQASAPILMLTALAETADRVEGLEAGVDDYLAKPFDPRELSLRIASILRR 141 Query: 121 QKSKD 125 + + Sbjct: 142 SRRHE 146 >gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986] gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986] Length = 250 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+ D + + + GF V A EA + K + + L+ID M + Sbjct: 21 MELILVCDDDREIVDAIKIYLSGEGFEVIAAYDGEEAIKLMAKHKV-DLLIIDIMMPVLD 79 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I Q+ + + + L + + I G GA+ +L KPFN L ++ + Sbjct: 80 G-IRATMQIRENSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRR 138 Query: 121 QK 122 K Sbjct: 139 YK 140 >gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 226 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + + + G+ V A + + + L++D + L Sbjct: 2 RILLVDDQVELTQPLSLVLSREGYQVDVADNGRTGLQLALDNGY-DLLILDWMLPYQSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G V +L + + + G GA+ +L+KPF + L +R L + Sbjct: 61 DICQKLRT--EGKTTPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRR 118 >gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL+D + + GF V A + +++D M G+ Sbjct: 4 RLLLIDDDTRLHALLASYLEQNGFAVTVACDGARGL-LALAAGTFDAVLLDVMMPGMDG- 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 I VR++ + + + L D + G GA+ ++ KPF+ L +R + + Sbjct: 62 IEVVRRIRQKSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRAT 121 Query: 123 SKDENQFLDA 132 + + A Sbjct: 122 PDAAGERIVA 131 >gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] Length = 233 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + V + + VF+ + +A + C + ++D + + F Sbjct: 6 NILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALD-CINSTKIDLAILDIMLPDIDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q+ V L + ++ I G GA+ ++ KPFN L ++ + Sbjct: 65 -QILKQIRQKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 121 >gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 257 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ + A + +A +E P+ +V+D + + Sbjct: 32 RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAA-REFKPDAVVLDIMLPDLDGL 90 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R D+ V +L + + +AG AG + ++ KPF+ E + +R L + Sbjct: 91 QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 148 >gi|20091276|ref|NP_617351.1| response regulator receiver [Methanosarcina acetivorans C2A] gi|19916399|gb|AAM05831.1| response regulator receiver [Methanosarcina acetivorans C2A] Length = 292 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD ++ + V A EA + KE P+ +++D M Sbjct: 16 KVLIVDDKKENVELMEAYLAVEPYDVITAYGGKEAFQKV-KEEKPDIILLDVMMPEVNGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + V L + E I G GA+ FL KP NR L+ ++ L ++ Sbjct: 75 EVCKILKGNPETQFIPVLMLTALSELEDRIRGIEVGADDFLTKPINRLELKTRVKSLLRV 134 Query: 121 QKSKDEN 127 + D Sbjct: 135 KCLHDRL 141 >gi|332886069|gb|EGK06313.1| hypothetical protein HMPREF9456_00187 [Dysgonomonas mossii DSM 22836] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+VD + ++ ++ GF V A S EA + + +++D M G+ Sbjct: 3 NKILIVDDEKDICEILEFNLSNEGFDVELAYSAEEALKKL--NPDFSLILLDVMMGGMSG 60 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + G ++ + +L + M+ G G + ++ KPF+ + + ++ + + Sbjct: 61 YKMAEKLRKEGNNIPIVFLTAKDTENDMLTGFSVGGDDYISKPFSIKEVIARIKAVVKRL 120 Query: 122 KSKD 125 + K Sbjct: 121 EVKK 124 >gi|325287243|ref|YP_004263033.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324322697|gb|ADY30162.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 236 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 4/125 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF----CEKELLPNYLVIDESME 57 ++LL + + + F V A EA + V D M Sbjct: 4 TTVLLAEDDFDFGSILKQYLEIHNFAVTWAKDGKEALDIFMLEANNNTPFGICVFDVMMP 63 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + F + + + +L + E I G + GA+ +++KPF + L ++ + Sbjct: 64 KMDGFTLAEKIINNSPETPFVFLTAKKMKEDKIKGLKLGADDYIVKPFEADILVLRLKNI 123 Query: 118 PQMQK 122 + + Sbjct: 124 LKRTQ 128 >gi|262405712|ref|ZP_06082262.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643395|ref|ZP_06721214.1| sensor histidine kinase/response regulator family protein [Bacteroides ovatus SD CC 2a] gi|294810622|ref|ZP_06769272.1| sensor histidine kinase/response regulator family protein [Bacteroides xylanisolvens SD CC 1b] gi|262356587|gb|EEZ05677.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641273|gb|EFF59472.1| sensor histidine kinase/response regulator family protein [Bacteroides ovatus SD CC 2a] gi|294442164|gb|EFG10981.1| sensor histidine kinase/response regulator family protein [Bacteroides xylanisolvens SD CC 1b] Length = 601 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R + + + F +++ EA EA + E P+ ++ D M + Sbjct: 355 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 411 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I ++ + + + + + E I GA+++++KPF+ + + L Q Sbjct: 412 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 471 Query: 122 KSKD 125 Sbjct: 472 MLLK 475 >gi|257094336|ref|YP_003167977.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046860|gb|ACV36048.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 368 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + V L + V S A + P+ +++D M + Sbjct: 1 MATILIVDDTPENLAVLNGLLSPL-HRVRAVNSGQRALQAAASRPRPDLILLDVMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R D+ V ++ + G GA ++ KP + +R Sbjct: 60 GYEVIRRLRADVATADIPVIFVTALDSSDDEEHGLSLGAVDYITKPIRPAIVIARVRTHL 119 Query: 119 QMQKSKDENQ 128 +++ ++D + Sbjct: 120 ELKAARDLLR 129 >gi|237715817|ref|ZP_04546298.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229443464|gb|EEO49255.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1360 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LLLV+ + R + DF + + EA E +E PN ++ D M Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGGEGERKAIEEN-PNLIISDIMMPKVDG 1165 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ + + V L + I GA+S++ KPFN + L + +L + Sbjct: 1166 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1225 Query: 120 MQKSKDEN 127 Q+ + + Sbjct: 1226 QQEKRKQE 1233 >gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 229 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLVD + + R ++ GF V E + +++D M Sbjct: 1 MIRILLVDDDLELCSMQREYLSNEGFAVQMCHDGERGLEEALSGDY-DLILLDVMMPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +R +++ V L + D I G GA+ ++ KP L +R + Sbjct: 60 GIDVLRRLRNH---SNIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|242281256|ref|YP_002993385.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio salexigens DSM 2638] gi|242124150|gb|ACS81846.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio salexigens DSM 2638] Length = 352 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 4/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + G V A + A E ++ + ++ D M + Sbjct: 5 RKILVVDDEPHNIMLLEGILTKLGHEVVGAENAVVALEKLDRTY--DLVLSDVMMPVMNG 62 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ D+ V + + GAN F+ KP + LR + + Sbjct: 63 FEFVEKIRENTETQDIPVIMVTTLSQKGDRLKAVEIGANDFITKPIDIVELRVRTESMLR 122 Query: 120 MQKSKDENQFLDA 132 + +DE + ++ Sbjct: 123 QKAQQDEIKSFES 135 >gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131] gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E + E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|170743275|ref|YP_001771930.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168197549|gb|ACA19496.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1857 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + G V AT+ EA E +++D M + Sbjct: 1737 RTVLLVDDDARNIFALSSVLERRGMRVLTATTGREAISIIEARADIAIVLMDIMMPEMDG 1796 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R P + + L + AGA+ +L KP N E L A+R Sbjct: 1797 YETMQVIRANPAFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRLWLH 1856 Query: 120 M 120 Sbjct: 1857 R 1857 Score = 99.9 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 8/129 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ +V L D GF V A+ +A + P + +D + +L Sbjct: 1471 LLIVEDDPHYARVLAQLARDGGFKVLIASRGADALALARRH-RPTAISLDVFLPDMLGWT 1529 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++H++Q P + V + E G GA +FL KP E L A+R + + Sbjct: 1530 VLSHLKQDPATRHIPVQIVT---LDEDRRHGLARGAYAFLSKPTTSEDLGAALRRI--KR 1584 Query: 122 KSKDENQFL 130 ++ + L Sbjct: 1585 FAEPRQRRL 1593 Score = 85.2 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 10/117 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+V+ + R L + A + EA + +V+D + + Sbjct: 1591 RRLLIVEDNPAERMSVATLLGHEDIAIVTAETGEEALAALRAG-AFDCVVLDLKLPDMSG 1649 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEV---DFEKMIAGARAGANSFLLKPF-NRETLRF 112 F + +R+ D+ V + + + A S ++K + E L Sbjct: 1650 FEVLERLREDHALADLPVVVFTGRALSPEEDARLHAL---ARSVVVKGVESPERLLD 1703 >gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] Length = 229 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905] gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905] Length = 230 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLV+ +R++ + GF V A + EA ++C + + +++D + Sbjct: 3 KHILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQT-FDLVILDIMIPKLNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE + +R+ + + + + G GA+ ++ KPF+ ++ + + Sbjct: 62 LEVLKVIREQAA---LPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|120612175|ref|YP_971853.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590639|gb|ABM34079.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 353 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V ++ G+ V AT A + +P+ +++D M G+ F Sbjct: 30 VLIVDDVPDNLAVLHDALDESGYTVLVATGGETALARA-AQAMPDVVLLDAMMPGMDGFE 88 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + + ++ + E + A AG ++ KP + M Q Sbjct: 89 VARRLKARPATAHIPIIFMTGLTETEHLEAALAAGGVDYVTKPIKPREVLARMNVHLQGA 148 Query: 122 KSKDENQF 129 + ++ Sbjct: 149 RRARQDMR 156 >gi|119486867|ref|ZP_01620842.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456160|gb|EAW37293.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 366 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ +R L F V A + + E LP+ ++ D M Sbjct: 1 MSKILVIEDEFAIRDNIIELLEIEDFEVLGAENGRIGFQKA-SEYLPDLILCDVMMPDLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +R P + +L + + + G GA+ +L KP E L A++ Sbjct: 60 GYGVLSALRSNPTTATIPFIFLTAKAEHTDIRQGMGLGADDYLTKPCTAEELLEAIKTRL 119 Query: 119 QMQKSKDENQFLD 131 + Q+ D+ L Sbjct: 120 KKQEIFDKQSQLK 132 >gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096] gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|91226928|ref|ZP_01261525.1| putative two-component response regulator [Vibrio alginolyticus 12G01] gi|91188891|gb|EAS75176.1| putative two-component response regulator [Vibrio alginolyticus 12G01] Length = 225 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + F G + A + + E + +++D + + Sbjct: 1 MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + M+ G + GA+ +L KPF+ + L M L + Sbjct: 60 GLTMCNKLRDEGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119 Query: 121 QK 122 + Sbjct: 120 YR 121 >gi|56966618|pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-Digmp gi|56966619|pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-Digmp gi|158430933|pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp And Gtp-Alpha-S gi|158430934|pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp And Gtp-Alpha-S Length = 459 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + V A A ++ LP+ +++D M G+ F Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-LPDIILLDVMMPGMDGF 61 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + I G +GA+ FL KP + L +R L + Sbjct: 62 TVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 121 Query: 121 QKSKDENQFLDA 132 + DE + +A Sbjct: 122 KLVIDELRQREA 133 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 43/125 (34%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + + +A + ++++ + + Sbjct: 154 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA--KISAGGPVDLVIVNAAAKNFDGL 210 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +R + V ++ D +M+ G N L +P + + L ++ Q Sbjct: 211 RFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 270 Query: 121 QKSKD 125 ++ D Sbjct: 271 KRYTD 275 >gi|323184776|gb|EFZ70147.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1357] Length = 209 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 20 LFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFV 77 + GF EA A E P+ +++D + G FI H+++ + D+ V Sbjct: 1 MLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPV 59 Query: 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLD 131 L + E + G GA+ ++ KPF+ + L ++ + + + ++ Sbjct: 60 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIE 113 >gi|311893921|dbj|BAJ26329.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 1412 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + G V +A + A E + +++D M + Sbjct: 1293 VLVVDDDDRNLYAITGILELHGMRVLQAENGRAALETLAANPGIDVILMDVMMPEMDGYT 1352 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R MP + + + + +GA+ ++ KP + L + Sbjct: 1353 ATAAIRAMPQHAALPIIAVTAKAMLGDREKSLGSGASDYVTKPVDAGELISRIEAQL 1409 >gi|295093907|emb|CBK82998.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 236 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R + G+ V EA EA E + + +V+D M Sbjct: 9 KVLIVDDEQDIRTLLNIYLKRLGYDVVEAADGVEAVETVRADKDIDLIVMDIMMPKLSGT 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + + V +L + G + FL KPF + + L + Sbjct: 69 EACQQIRE---FSSIPVLFLTAKTKEPDQNEAYDVGGDDFLAKPFTQSEFNRKVNALIRR 125 Query: 121 QK 122 K Sbjct: 126 YK 127 >gi|294810056|ref|ZP_06768728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442749|gb|EFG11544.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295085462|emb|CBK66985.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1307 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + R + + F V A + EA E ++ + + +V D M + Sbjct: 1061 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSV-DVIVSDVMMPEMDGL 1118 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 HV+ + + V L + E + G +GA+ +L KPF+ + L + L ++ Sbjct: 1119 ELCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLLKL 1178 Query: 121 Q 121 + Sbjct: 1179 R 1179 >gi|302554553|ref|ZP_07306895.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302472171|gb|EFL35264.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1824 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1703 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1762 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1763 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMDQWMR 1822 >gi|322420858|ref|YP_004200081.1| Fis family two component sigma54 specific transcriptional regulator [Geobacter sp. M18] gi|320127245|gb|ADW14805.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M18] Length = 457 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + D G+ A EA C KE LP +++D M + Sbjct: 4 TILIVDDEEGIRSSLAGILEDEGYRTVCAADGTEALALCNKE-LPGLVLLDIWMPKMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V + E + + GA F+ KP + E + + M + Sbjct: 63 ETLKRLKEQHPGLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALSMNR 122 Query: 123 SKDENQFL 130 K+EN L Sbjct: 123 LKEENATL 130 >gi|253568433|ref|ZP_04845844.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|251842506|gb|EES70586.1| two-component system response regulator [Bacteroides sp. 1_1_6] Length = 231 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + + GF + A+ E EL P+ LV D M + F Sbjct: 7 TVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFF-ELRPDVLVADVMMPKMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R V +L ++ G GAN +L KPF + L ++ L Sbjct: 66 EMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALM 121 >gi|288941792|ref|YP_003444032.1| Fis family two component sigma54 specific transcriptional regulator [Allochromatium vinosum DSM 180] gi|288897164|gb|ADC63000.1| two component, sigma54 specific, transcriptional regulator, Fis family [Allochromatium vinosum DSM 180] Length = 455 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 4/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + + D G+ V A + A ++ P+ +++D M + Sbjct: 4 THILVVDDEPDIRGLVKEILEDEGYAVAVAENGEAA-RHALRDRRPDLILLDIWMPDIDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + V + E + R GA FL KP + L + + Sbjct: 63 ISLLKEWAEDDGLP-CPVIMMSGHGTVETAVEATRLGAYDFLEKPLSMAKLLLTLERALE 121 Query: 120 MQKSKDEN 127 K + EN Sbjct: 122 ADKLQQEN 129 >gi|257063841|ref|YP_003143513.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791494|gb|ACV22164.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 234 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R G V +A + EA E ++ L + +++D MEG Sbjct: 3 KTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHL-DLVILDVMMEGYNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + +R + + L + D G + GA+ ++ KPF L + Sbjct: 62 FEVCSAIR--DKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLR 119 Query: 120 MQKSKD 125 + ++ Sbjct: 120 NRSPQE 125 >gi|237717363|ref|ZP_04547844.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262406129|ref|ZP_06082679.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294644026|ref|ZP_06721803.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|229443346|gb|EEO49137.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262357004|gb|EEZ06094.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292640550|gb|EFF58791.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1326 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + R + + F V A + EA E ++ + + +V D M + Sbjct: 1080 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSV-DVIVSDVMMPEMDGL 1137 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 HV+ + + V L + E + G +GA+ +L KPF+ + L + L ++ Sbjct: 1138 ELCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLLKL 1197 Query: 121 Q 121 + Sbjct: 1198 R 1198 >gi|168182546|ref|ZP_02617210.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182674404|gb|EDT86365.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 230 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + G VF+A +A +E + +++D M + Sbjct: 5 KVLIVDDEDEIREAIEIYLRNEGITVFKAKDGIDAL-MLLEEKDIHLIIMDIMMPRMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYITKPFNMLELVARIKSQLRR 120 >gi|77164200|ref|YP_342725.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|76882514|gb|ABA57195.1| two component transcriptional regulator, winged helix family [Nitrosococcus oceani ATCC 19707] Length = 231 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LL D + + + GF V A A + V+D M Sbjct: 1 MNRILLADDDIELCGMLKQYLEVEGFQVGMAHGGESALNQARTGGY-DLAVLDVMMPQLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + +R+ L V V L + I G GA+ +L KP N L +R + Sbjct: 60 GFDVLRELRKDSL---VPVLMLTARGEDVDSIIGLELGADDYLPKPCNPRVLVARIRAIL 116 Query: 119 QMQKSKDE 126 + +S+ + Sbjct: 117 RRLQSQTQ 124 >gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 233 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|329934222|ref|ZP_08284301.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305818|gb|EGG49673.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 255 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LLV+ ++R+ +G+ V A E +E + L++D + G + Sbjct: 8 TILLVEDDTVIRRSVTMALERYGYRVTAAADGLTGLELF-REGRHDLLLLDVMLPGLDGI 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + V + D +++G AGA+ +++KP + L +R L + Sbjct: 67 GLCRRIRETSMD---PVLMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRR 123 >gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 233 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L V+ ++R+ + GF V + + P+ ++D + G+ Sbjct: 4 THVLFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQ-RPDIALLDVMLPGMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 63 VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|317407497|gb|EFV87452.1| winged helix family Two component transcriptional regulator [Achromobacter xylosoxidans C54] Length = 195 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+++ + H G++V A E + +V+D + Sbjct: 67 RVLVIEDDPDILANITHHLTRRGYIVDCAEDGLRGYAMA-AEGGFDLIVLDLMLPRLDGY 125 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G + + + +AG AGA+ +L+KPF L ++ L Sbjct: 126 DLCRQLRA-EAGCGTPIIIVTARDTLDNRLAGFDAGADDYLVKPFALAELAARVKALLHR 184 Query: 121 QKSKDENQFL 130 + L Sbjct: 185 ASGAGAARVL 194 >gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+ D +R + GF+V A +A E + P+ L++D M G Sbjct: 3 KRILIADDEASIRNALAYALKREGFLVETAVDGEDALEKV-RLFHPDVLILDVMMPKLGG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + V + L + D + G GA+ F+ KPF+ L ++ L + Sbjct: 62 YEVCRRL---ESRKGVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVR 118 Query: 120 MQKSK 124 + + Sbjct: 119 RLERE 123 >gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ VF + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 226 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + GF A + P+ +++D + G Sbjct: 1 MKSRVLVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAF-RSAQPDIVLLDVMLPGK 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R++ + V + L + D ++ G +GA+ ++ KPF + L MR + Sbjct: 60 DG-TQVAREIRAESGVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLR 118 Query: 120 MQKSKDENQFL 130 Q+ + L Sbjct: 119 RQEDPGPERLL 129 >gi|189465171|ref|ZP_03013956.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM 17393] gi|189437445|gb|EDV06430.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM 17393] Length = 1391 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R L + +FEA EA E +K + +V D M + Sbjct: 1141 TILIVEDNKDMRSYIRTLLVG-DYRLFEAGDGQEALEIVQKHT-IDLIVSDLMMPVMDGM 1198 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + G + +L KPF+ E LR +R + + Sbjct: 1199 ELSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNILNL 1258 Query: 121 QKSKDEN 127 ++ + Sbjct: 1259 RRKYKKM 1265 >gi|150010077|ref|YP_001304820.1| two-component system sensor histidine kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938501|gb|ABR45198.1| two-component system sensor histidine kinase/response regulator, hybrid [Parabacteroides distasonis ATCC 8503] Length = 633 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D S +R RH+F + V EA + E E E P++++ D M Sbjct: 379 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 436 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +P V V L +V+ E +IAG GA+ ++ KPF+ E LR + L + Sbjct: 437 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 496 Query: 120 MQKSKDENQF 129 + DE + Sbjct: 497 RR---DEMRR 503 >gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630] gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile] Length = 233 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + GF V++ + EA E C + + ++D + + F Sbjct: 4 NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALE-CIESKNLDMAILDIMLPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L +++ I G GA+ ++ KPFN + ++ + Sbjct: 63 HICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119 >gi|114762219|ref|ZP_01441687.1| response regulator [Pelagibaca bermudensis HTCC2601] gi|114545243|gb|EAU48246.1| response regulator [Roseovarius sp. HTCC2601] Length = 415 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD S + K+ + +GF V++A S EA CE E+ + ++ D M G+ Sbjct: 19 QRILLVDDSAVQLKILAAMMRHWGFEVWQAESGAEALALCE-EIAFDAVLSDWMMPGMDG 77 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116 RQ+P + + L + + ++ G AGA+ FL KP + + LR + Sbjct: 78 LELCRQFRQLPRDSYGYFILLTSKNERGAIVRGLDAGADDFLTKPVSSDELRARINAGAR 137 Query: 117 LPQMQKSKDE 126 L Q+ E Sbjct: 138 LLSTQRQLAE 147 >gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|265751907|ref|ZP_06087700.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|263236699|gb|EEZ22169.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 379 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + L + F V A + EA P+ +++D M + F Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 74 EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133 Query: 121 QKSKD 125 +K Sbjct: 134 VAAKR 138 >gi|260777826|ref|ZP_05886719.1| pole remodelling regulatory diguanylate cyclase [Vibrio coralliilyticus ATCC BAA-450] gi|260605839|gb|EEX32124.1| pole remodelling regulatory diguanylate cyclase [Vibrio coralliilyticus ATCC BAA-450] Length = 376 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 8/137 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + R + L V AT +A C K+ P+ +++D M + Sbjct: 6 TSVLVVDDNAENRVLLSGLLKPH-HRVLVATGGVQAINIC-KQKKPDIVLLDVMMPEMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + P D+ V +L + E G AGA ++LKP + L + + Sbjct: 64 YEVCERLTSDPETHDIPVIFLTAKSQIEDEQRGFAAGAVDYILKPISPPILISRINTHLR 123 Query: 120 MQKS----KDENQFLDA 132 ++ + ++N+ L+ Sbjct: 124 LRGAMDALAEQNEELEE 140 >gi|197118407|ref|YP_002138834.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] gi|197087767|gb|ACH39038.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] Length = 452 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD S K+ L G+ V A + +A E +E P+ ++ D M + F Sbjct: 14 ILIVDDSPTQAKLLEQLLAGEGYRVAIARNGSDALEQI-RERQPDLVISDILMPEMDGFE 72 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR M D + L D ++ AGAN F+ KP++ + L +R++ Q + Sbjct: 73 LCRRVRGMESIKDTPIVLLTHLNDPSDVLHSLEAGANYFVSKPYSDKLLLNRIRDVLQGE 132 Query: 122 KS 123 ++ Sbjct: 133 RA 134 >gi|119469501|ref|ZP_01612405.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Alteromonadales bacterium TW-7] gi|119447036|gb|EAW28306.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Alteromonadales bacterium TW-7] Length = 330 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD KV R + + + + A S A EKE LP +++D M + F Sbjct: 9 RVLIVDDEPANLKVMREILGNQ-YRLSFAKSGEAALTLLEKE-LPKLILLDIMMPDMNGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 HV++ P + + ++ D G GA ++ KP + +R ++ + Sbjct: 67 EVCEHVKRNPKTAHIPIIFVTALGDESDEYKGFELGAVDYITKPISPAIVRARVKTHLSL 126 Query: 121 QKSKDENQ 128 +++ Q Sbjct: 127 VQAEQLKQ 134 >gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 252 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 26 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 84 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 85 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 141 Query: 121 QK 122 + Sbjct: 142 PR 143 >gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353] Length = 234 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|255532721|ref|YP_003093093.1| ATPase [Pedobacter heparinus DSM 2366] gi|255345705|gb|ACU05031.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1340 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LLLVD + + + F D + + A A E + ++ D M + Sbjct: 1088 KLLLVDDNKEILAYLQDFF-DQTYQISVAFDGKMALEML-AHQQFDMIISDVMMPELDGL 1145 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F V+Q + + + L + + ++I G GA+ ++ KPF+ L + L + Sbjct: 1146 HFCKRVKQNINTSHIPLILLTAKTEDSQLIKGLEMGADDYVTKPFSTSLLAAKITNLLRS 1205 Query: 121 QKSKDE 126 +K E Sbjct: 1206 RKRLKE 1211 >gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + ++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 224 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905] gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905] Length = 713 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ + ++ R FMV + E + + +++D + G+ F Sbjct: 488 KILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQAL-HGDYDLIILDIMLPGMNGF 546 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + ++ + ++ + + I G GA+ ++ KPF+ L ++ Sbjct: 547 EICKQIRAV---NNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSR 603 Query: 121 QKSKDENQ 128 + N+ Sbjct: 604 YERLASNK 611 >gi|116328162|ref|YP_797882.1| response regulator receiver domain-containing protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120906|gb|ABJ78949.1| Response regulator receiver domain [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 120 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD S + RK+ ++ F + EA + + + + + + +V D +M + Sbjct: 1 MKRILIVDDSAVFRKILNLHLSNSDFDILEAVDGQDGLDKLQSDKV-DLIVSDMNMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F+ +++ P + L E E G AGA ++L KPF+ E L + +L Sbjct: 60 GITFVKEIKKDPKNKFTPIIMLTTESQTEVKNEGLAAGARAWLTKPFSPEELVQTIHKLL 119 >gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 227 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ ++++ R G+ V + S EA + ++ P+ +++D + + Sbjct: 6 TILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQ-RPDLVILDIMLPDLDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + L E +I G GA+ +++KPFN + L +R L + Sbjct: 65 TVCQKVRE-FASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRR 121 >gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL D +R++ RH G++V EA EA K+ + V+D M Sbjct: 1 MIHILLADDDEHMRQLVRHYLQLEGYVVHEAEDGEEASGLLAKQH-IHLAVVDIMMPHKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R D + L + E G AG + ++ KPF + L F ++ L Sbjct: 60 GYEVCEEIRS---YYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRYEVVNE 124 >gi|238797763|ref|ZP_04641257.1| KDP operon transcriptional regulatory protein kdpE [Yersinia mollaretii ATCC 43969] gi|238718404|gb|EEQ10226.1| KDP operon transcriptional regulatory protein kdpE [Yersinia mollaretii ATCC 43969] Length = 238 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R+ R G+ VFE+ ++ P+ +++D + Sbjct: 15 TNILIVEDEKEIRRFVRIALESEGWRVFESDTLQRGLIEAGT-RKPDLIILDLGLPDGDG 73 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + + + L E +A AGA+ +L KPF L +R + Sbjct: 74 LT-YIQDLRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH 132 >gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273] gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273] Length = 233 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M + Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKIDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51] gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 1 MDSL-LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M + L+V+ ++ + D G+ A EA E K + +++D M + Sbjct: 2 MKKIILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELF-KSKRVDLILLDIMMPKL 60 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ + V + L + + G GA+ ++ KPF+ + L + L Sbjct: 61 DGLSVCRTIRKQD--SRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINAL 118 Query: 118 PQMQKSKDEN 127 + + + Sbjct: 119 LKRADAGAQE 128 >gi|323694714|ref|ZP_08108874.1| KDP operon transcriptional regulatory protein KdpE [Clostridium symbiosum WAL-14673] gi|323501229|gb|EGB17131.1| KDP operon transcriptional regulatory protein KdpE [Clostridium symbiosum WAL-14673] Length = 232 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ V+ + + A++ A P+ +++D + Sbjct: 1 MNKPLILVVEDDAAVKNLITTTLETHQYRFRTASTGETAVMEAVSHN-PDVILLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I +R++ + + L + I AGA+ +L KPF+ E L +R Sbjct: 60 MDG-IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTF 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|315222867|ref|ZP_07864751.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188061|gb|EFU21792.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 2/131 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ + G+ V A EA E +K + ++ D M + Sbjct: 3 KRILLVDDEVEITEINKRYLIQAGYEVNVAHDGQEALEIFQK-YSIDLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 + L + ++ + I GA+ F+ KPF+ L + + + Sbjct: 62 YDLIGEVQYLSPEQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRRI 121 Query: 121 QKSKDENQFLD 131 +S + L Sbjct: 122 HRSMGTEETLQ 132 >gi|291543087|emb|CBL16197.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] gi|291549580|emb|CBL25842.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 233 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M+S+L++D + + + A E E+ + +++D M + Sbjct: 1 MNSVLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEENKDTCSLIILDVMMPDM 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +V V L + D E ++G R GA+ +L KPF L + L + Sbjct: 61 NGF-QVLQEIRKKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|285017655|ref|YP_003375366.1| two-component system regulatory protein, ompr family [Xanthomonas albilineans GPE PC73] gi|283472873|emb|CBA15378.1| probable two-component system regulatory protein, ompr family [Xanthomonas albilineans] Length = 236 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S +L+VD +R++ ++ G+ V A +V + E P+ +V+D M G Sbjct: 1 MKSFILVVDDDPDLRRLISEFLSEHGYQVESAETVAQ-MRQLMAERQPDLIVLDVMMPGE 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + V L I G GA+ +L KP N L +R L + Sbjct: 60 DGLSAARQLASERGAPAVIMLSALGSDTDRIIGLEVGADDYLAKPCNPRELLARVRALLR 119 Query: 120 MQKS 123 ++ Sbjct: 120 RSQA 123 >gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 254 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++V+ + + + GF + A E +E + +++D + + Sbjct: 31 IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQY-DLVLLDIMLPDMDGLE 89 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR++ +DV + L + D E + G GA+ ++ KPF + L +R ++ Sbjct: 90 VCRRVREI---SDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVH 146 Query: 122 KSKDENQF 129 K+ + Sbjct: 147 KANEAGNR 154 >gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 229 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + + V A+ K ++D + G Sbjct: 1 MSRILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYV-LCILDVMLPGKD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKAIRKE---KNIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116 Query: 119 QM 120 Sbjct: 117 AR 118 >gi|239834773|ref|ZP_04683101.1| Probable transcriptional regulator ycf27 [Ochrobactrum intermedium LMG 3301] gi|239822836|gb|EEQ94405.1| Probable transcriptional regulator ycf27 [Ochrobactrum intermedium LMG 3301] Length = 257 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + ++ G+ A A + L P+ +++D + + F Sbjct: 33 VLIVEDEPEIAQILDAYLVREGYRTVRAADGETALQH-HALLSPDIVLLDVRIPKLDGFA 91 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK- 122 R + V + + ++G R GA+ +++KPFN + + ++ + + K Sbjct: 92 VLARLR-QTKNTPVIMVTALAEDIDRLSGLRLGADDYVVKPFNPQEVVARVKAVLRRTKG 150 Query: 123 -SKDENQFLDAI 133 ++ + AI Sbjct: 151 DQQETLRRFGAI 162 >gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis EAS054] gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis EAS054] gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis EAS054] Length = 253 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G V A + + +V+D + G+ F Sbjct: 24 RILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L IAG GA+ +L KPFN + L +R L + Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + KV + G+ V+ + E +K+ P+ +V+D + + Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQN-PDIVVLDLMLPNMSG- 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + + L + ++ I G GA+ +++KP + + ++ + + Sbjct: 67 EEIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRR 124 >gi|187926366|ref|YP_001892711.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|241665853|ref|YP_002984212.1| transcriptional regulator [Ralstonia pickettii 12D] gi|187728120|gb|ACD29284.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240867880|gb|ACS65540.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 243 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R GF V + + P +V+D M V Sbjct: 4 TKILVVDDDVELRDLLREYLTQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A DV V L D I G GA+ +L KPF+ L + + + + Sbjct: 63 LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122 >gi|83643744|ref|YP_432179.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631787|gb|ABC27754.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 469 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ ++F + V A + EA E ++ LP+ +++D + G+ F Sbjct: 9 RILVVDDQATNIELLHNIFKEV-HEVEFAMTGEEALEMAIRD-LPDIILLDIQLPGMDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V +L + D + M+ G + GA +++KPFN L + + Sbjct: 67 EVCRRLKSNANTRHIPVIFLTAKNDVDDMVNGYKQGAVDYVIKPFNWFELIAKVNTQLVL 126 Query: 121 QKSKDENQ 128 ++ K E + Sbjct: 127 REMKSELR 134 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S + + D + +F A + +A + +E P+ +++D + Sbjct: 167 QRVLIVDDSVSNIETLASMLGDE-YELFFAVNGEQA-KQIAREAHPHLIMLDVVLPDTDG 224 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ P D+ + ++ E G AGA +++KP++ ++ R L + Sbjct: 225 YQVCKQLKREPETRDIPIVFVTSRDSAEDETRGLEAGAIDYIIKPYSHSIVKARTRNLLE 284 Query: 120 MQKSKDENQFL 130 + +++D + L Sbjct: 285 LVRNRDLLKKL 295 >gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] Length = 309 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD S GF V ATS A ++ + P+ +++D M G+ F Sbjct: 13 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDIILLDAVMPGMDGFD 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ V V ++ + E ++ AG +L KP N + LR +R Sbjct: 72 TCTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 131 Query: 122 KSKDENQF-LDA 132 +S + LDA Sbjct: 132 RSAQSARVALDA 143 >gi|88706905|ref|ZP_01104604.1| Adenylyl cyclase class-3/4/guanylyl cyclase [Congregibacter litoralis KT71] gi|88698827|gb|EAQ95947.1| Adenylyl cyclase class-3/4/guanylyl cyclase [Congregibacter litoralis KT71] Length = 495 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L VD R + G V A S EA E + +++D M G+ Sbjct: 143 ILAVDDREENRALLARYLTRSGHFVVTAPSGEEALEML-ANADVDVVLLDRMMPGMDGRE 201 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ P V + E D + +I +AGA+ +L KPFN L+ ++ + + Sbjct: 202 VLRRIKAEPRLRATPVIMISGEQDMQGIIECIKAGADDYLFKPFNPVLLQARIKAGIERK 261 Query: 122 KSKDENQF 129 + D Q Sbjct: 262 QWHDREQL 269 >gi|75760000|ref|ZP_00740067.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492519|gb|EAO55668.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 117 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++FG+ EA + EA + E + +++V+D M + Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ +DV + +L + + + G R G + +++KPF+ L M + Sbjct: 64 SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAV 117 >gi|325473731|gb|EGC76920.1| sigma-54 dependent transcriptional regulator/response regulator [Treponema denticola F0402] Length = 473 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 2/131 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L++D +R+ D G+ V A + + K+ + + ++ D M + Sbjct: 1 MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEV-DLVITDLKMPEI 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + V V L E + R GA FL KP + E L ++ Q Sbjct: 60 SGEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRALQ 119 Query: 120 MQKSKDENQFL 130 + +N+ L Sbjct: 120 NRALVLQNRAL 130 >gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+ D +R + GF+V A +A E + P+ L++D M G Sbjct: 3 KKILIADDEASIRNALAYALKREGFLVETAVDGEDALEKV-RLFHPDVLILDVMMPKLGG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + + + L + D + G GA+ F+ KPF+ L ++ L + Sbjct: 62 YEVCRRL---ESRKGIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVR 118 Query: 120 MQKSK 124 + + Sbjct: 119 RLERE 123 >gi|306826271|ref|ZP_07459605.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431547|gb|EFM34529.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 232 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ V A E E K + ++ D M + Sbjct: 3 KTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 FI+ V+ + + + + I G GA+ F++KPF+ L + + + Sbjct: 62 YDFISEVQYIAPAQ--PFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILR 119 Query: 120 MQKSKDENQFLD 131 E + ++ Sbjct: 120 RLSRGRETEQIE 131 >gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + +D G +V AT A E + + P+ +++D M G+ F Sbjct: 11 VLIVDDMPDNLAMLSDALDDSGHIVLVATDGLSALERLD-HITPDLILLDAMMPGIDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++Q+ V V ++ + E ++ G G ++ KP + + + + Sbjct: 70 TCRRIKQVRRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIRTA 129 Query: 122 KSKDENQ 128 + + + Sbjct: 130 RMMVQAR 136 >gi|288925418|ref|ZP_06419352.1| sensor histidine kinase/response regulator [Prevotella buccae D17] gi|288337889|gb|EFC76241.1| sensor histidine kinase/response regulator [Prevotella buccae D17] Length = 880 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++ + + + + F V + EA KE +P+ +V D M + Sbjct: 625 QHIIVAEDDDEIAQYLKAELEK-DFRVTLCPNGQEALNTVFKE-MPSLVVSDIMMPVMDG 682 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A ++ + V L + E + G GA+++++KPFN + L + L Sbjct: 683 NTLCARLKSNVNTNHIPVILLTAKSRDEDRLEGLETGADAYIVKPFNMDILHRTITNLLH 742 Query: 120 MQKSKD 125 ++ Sbjct: 743 QRELLR 748 >gi|254510175|ref|ZP_05122242.1| response regulator [Rhodobacteraceae bacterium KLH11] gi|221533886|gb|EEE36874.1| response regulator [Rhodobacteraceae bacterium KLH11] Length = 424 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S + R++ +GF V EA + A + C + P ++ D M G+ Sbjct: 20 RKVLVVDDSRLQRRILVASLKKWGFEVLEADNGEAALDLCLSDP-PQLVLSDWVMPGMSG 78 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 LEF R + + L + + +++ G AGA+ FL+KP + LR + Sbjct: 79 LEFCHAFRNLATEQYSYFILLTSKSEKQEVAKGLDAGADDFLIKPLEADELRARISAGAR 138 Query: 117 LPQMQKSKDENQFL 130 + MQ+ E L Sbjct: 139 ILDMQRELSEKNRL 152 >gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + +D ++V A A E + + +++D + + Sbjct: 1 MK-ILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDV-YEYDLILLDIMLPKID 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + L +AG AGA+ +L+KPF + L +R L + Sbjct: 59 GISLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRR 118 >gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 269 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ + A + +A +E P+ +V+D + + Sbjct: 44 RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAA-REFKPDAVVLDIMLPDLDGL 102 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R D+ V +L + + +AG AG + ++ KPF+ E + +R L + Sbjct: 103 QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 160 >gi|170755580|ref|YP_001780537.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120792|gb|ACA44628.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 223 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +RK+ + N G+ EA A + +E + ++ D M + Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYRE-YIDLIISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +V + + + F G R G + +++KP + + + L + Sbjct: 60 GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119 Query: 121 QKSKDENQ 128 + +E + Sbjct: 120 SQIINERK 127 >gi|154491974|ref|ZP_02031600.1| hypothetical protein PARMER_01604 [Parabacteroides merdae ATCC 43184] gi|154088215|gb|EDN87260.1| hypothetical protein PARMER_01604 [Parabacteroides merdae ATCC 43184] Length = 688 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LL++D S +R +H+FN + + EA + + KE P+ ++ D M Sbjct: 441 KKLLVIDDSDQIRWFLKHVFNKE-YQILEARNGQDGINVALKEE-PDLILCDVMMPVKDG 498 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ P V L +V+ E +I G AGA+ ++ KPF+ E LR + L + Sbjct: 499 YETCREIKNDPKMAQTPVVMLTAKVESEDVITGIEAGADDYITKPFDVEILRSKINSLMK 558 Query: 120 MQ 121 + Sbjct: 559 KR 560 >gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ + + L GF V A + + +++D + G+ Sbjct: 1 MTSVLIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREF-SQHEISIVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V + + I G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCKKLRQS---STVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVL 116 Query: 119 QMQK 122 + + Sbjct: 117 RRGR 120 >gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 267 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 4/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + G+ V T+ A + + +++D + + Sbjct: 43 MTKVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV---GGCDIVILDLGLPDMD 99 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G + + L M+ G +GA+ ++ KPF L +R L + Sbjct: 100 GLDVARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRR 159 Query: 121 QKSK-DENQFLD 131 + E++ ++ Sbjct: 160 AGGEVTEDEIIE 171 >gi|150006467|ref|YP_001301211.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] gi|149934891|gb|ABR41589.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] Length = 379 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + L + F V A + EA P+ +++D M + F Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 74 EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133 Query: 121 QKSKD 125 +K Sbjct: 134 IAAKR 138 >gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter ruber DSM 13855] gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM 13855] gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] Length = 247 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LLLV+ V + N+ G+ V + ++ + + +++D + + Sbjct: 7 LLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGG-IDLVLLDIRLPDLSGLE 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++ + L E + G RAGA+ +L KPF + L + L + Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRR 122 >gi|16126701|ref|NP_421265.1| response regulator PleD [Caulobacter crescentus CB15] gi|221235482|ref|YP_002517919.1| response regulator PleD [Caulobacter crescentus NA1000] gi|60390590|sp|Q9A5I5|PLED_CAUCR RecName: Full=Response regulator PleD; AltName: Full=Stalked cell differentiation-controlling protein; Includes: RecName: Full=Diguanylate cyclase; Short=DGC; AltName: Full=Diguanylate kinase gi|302425180|sp|B8GZM2|PLED_CAUCN RecName: Full=Response regulator PleD; AltName: Full=Stalked cell differentiation-controlling protein; Includes: RecName: Full=Diguanylate cyclase; Short=DGC; AltName: Full=Diguanylate kinase gi|13424011|gb|AAK24433.1| stalked-cell differentiation controlling protein [Caulobacter crescentus CB15] gi|220964655|gb|ACL96011.1| GGDEF/response regulator protein pleD [Caulobacter crescentus NA1000] Length = 454 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + V A A ++ LP+ +++D M G+ F Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-LPDIILLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V + I G +GA+ FL KP + L +R L + Sbjct: 63 TVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 122 Query: 121 QKSKDENQFLDA 132 + DE + +A Sbjct: 123 KLVIDELRQREA 134 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 43/125 (34%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + + +A + ++++ + + Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA--KISAGGPVDLVIVNAAAKNFDGL 211 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A +R + V ++ D +M+ G N L +P + + L ++ Q Sbjct: 212 RFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271 Query: 121 QKSKD 125 ++ D Sbjct: 272 KRYTD 276 >gi|323967491|gb|EGB62908.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|327254370|gb|EGE65992.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli STEC_7v] Length = 225 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSSVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 L+VD + +V GF V A A + + P+ +V+D + G+ Sbjct: 13 RALVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTD-PDVIVLDVGLPGMDGI 71 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R TD +V L D M+ G GA+ ++ KPF+ L ++ + + Sbjct: 72 EVCRTLR---TFTDAYVVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLRR 128 Query: 121 QKSKDENQ 128 + ++ Sbjct: 129 PRQSAADR 136 >gi|291448820|ref|ZP_06588210.1| response regulator mprA [Streptomyces roseosporus NRRL 15998] gi|291351767|gb|EFE78671.1| response regulator mprA [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + VR + G+ V A P+ LV+D M + Sbjct: 6 RILVAEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTA-WEPDALVLDVMMPALDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V L + + G AGA+ +L+KPF + L +R L + Sbjct: 65 AVCRRLRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAA 124 Query: 123 SKDENQFLD 131 ++ L Sbjct: 125 PPAPDEDLA 133 >gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLEF 62 +L+V+ + + + V A A E E + + +++D + + Sbjct: 5 VLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + D + +L +AG AGA+ ++ KPF E L +R + + Sbjct: 65 TVLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122 >gi|260910360|ref|ZP_05917033.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635543|gb|EEX53560.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 858 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L D + V ++ R L + V A + A + E +P+ +V D M + Sbjct: 611 TILFADDNDDVCQMVRTLLATR-YRVLTAPNGEVALQLAELN-IPDLVVSDVMMPQMDGL 668 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + + V L E+ IAG GA++++ KPF+ L + L Q Sbjct: 669 ELCRRLKQTTATSHIPVILLTARTLDEQRIAGYEHGADAYITKPFSAPLLLARIHNLLQS 728 Query: 121 QKSKD 125 +K Sbjct: 729 RKQLK 733 >gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + G+ VF+A + E KE + +++D M G+ Sbjct: 5 NILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILAKED-IHLVLLDIMMPGMNGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + L + I G GA+ +++KPFN L ++ + Sbjct: 64 EMCKKIREN---NNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRR 120 Query: 121 QKSKDEN 127 + N Sbjct: 121 YTQLNPN 127 >gi|170755428|ref|YP_001779912.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226947489|ref|YP_002802580.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|169120640|gb|ACA44476.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226843713|gb|ACO86379.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|322804530|emb|CBZ02081.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 225 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L++D + +V + + G+ V +ATS EA + + E PN L++D + + Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPNLLILDLMLPDI 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ V + L + + ++ G G++ ++ KPF+ + L + + Sbjct: 60 SGENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116 Query: 118 PQMQK 122 + K Sbjct: 117 LKRVK 121 >gi|83646377|ref|YP_434812.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83634420|gb|ABC30387.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 841 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD S + V G+ A + +A + E P+ +++D M + F Sbjct: 23 TVLIVDDSPLNLDVAVACLESRGYRTLSAENGVQALQIAM-EHQPSLILLDVMMPEMNGF 81 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ D+ V ++ D + AG AG ++ KPF E L + + Sbjct: 82 ETCRKLKKLSGCDDIPVIFMTALSDVKSKKAGFDAGGVDYVTKPFQVEELAARVHTHIAL 141 Query: 121 Q 121 + Sbjct: 142 K 142 Score = 81.0 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + + + + D + V A++ +A E + + +V D M G Sbjct: 720 VLVVDDDVNILRSIKRILRDEAYEVLVASNTEDAYEVLARREV-AVIVSDLQMPGESGVQ 778 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELPQMQK 122 + + L E + G ++ KP++ L + + + Sbjct: 779 FFSKIKTMHPRSLRILLTGHGSSESLEGAINQGEIYRYISKPWDNAHLLETLGAAFKQYE 838 >gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium thermophilum IAM 14863] gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium thermophilum IAM 14863] Length = 232 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 3/123 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ R V EA A P+ +++D M + + Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAG-PDLVLLDVMMPRLDGWQ 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + V V L + G R GA+ ++ KPF+ L ++ + + Sbjct: 67 TLQRIREE-SAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAG 125 Query: 124 KDE 126 + E Sbjct: 126 QVE 128 >gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 235 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + GF A EA ++ + +++D M + Sbjct: 5 TILIVDDEKEIRDLVDIYLKSDGFNTINACDGLEAINLV-RDNDIDLIILDVMMPNLNGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + ++ + L + + I G GA+ +L KPFN L ++ + Sbjct: 64 ETCLKIREI-KEMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLRR 120 >gi|116622000|ref|YP_824156.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225162|gb|ABJ83871.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 557 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD ++ + G+ V A S K P +++D M G+ F Sbjct: 6 TILVVDDDSDSLRLLTDILTAEGYRVRPADSGQL-ALASAKAAAPELIMLDIRMPGMDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + +L + + G GA F+ KP+ R L +R ++ Sbjct: 65 EVCRRLQADEKTRRIPIIFLSAAGQLQDRVLGLSLGAADFISKPYERPELLARVRTHMEL 124 Query: 121 QKSKDENQ 128 + + + Sbjct: 125 GRLRAHLE 132 >gi|319781847|ref|YP_004141323.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167735|gb|ADV11273.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 238 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 9/133 (6%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M S +L+VD +R + + F G A E E + + + +V+D + Sbjct: 1 MKSDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIE-METILRRVQVDLIVLDVMLP 59 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G LE +R + L + + G GA+ ++ KPF+ L +R Sbjct: 60 GKSGLELCRDLRAQYS---TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIR 116 Query: 116 ELPQMQKSKDENQ 128 + + + + + Sbjct: 117 AVLRRNGAAEPKR 129 >gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + + G+ V +A+ EA + + + +++D M + Sbjct: 6 VLVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQ-ISNDNEVDLVILDIMMPKMDGIE 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R M ++ + L + I G GA+ +++KPFN L ++ + K Sbjct: 65 VCMR-MRKSKNMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRRYK 122 >gi|288929066|ref|ZP_06422912.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] gi|288330050|gb|EFC68635.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] Length = 898 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++L D + V ++ R L + V A + A + E +P+ +V D M + L Sbjct: 655 TILFTDDNDDVCQMARTLLETH-YRVLTAPNGVVALQMAELN-IPDLVVSDVMMPQMNGL 712 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + ++Q + + V L E+ I G GA++++ KPF+ L ++ L Q Sbjct: 713 ELCSRLKQSTATSHIPVILLTARTLDEQRIEGYEHGADAYITKPFSAPLLLARIQNLLQS 772 Query: 121 QKSKDE 126 +K + Sbjct: 773 RKQLKQ 778 >gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis RM3268] gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis RM3268] Length = 220 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + ++ G+ V A EA EF + + +V+D M + F Sbjct: 2 KILLVEDEKDLNQIIAKCLKKDGYSVDCAFCGKEALEFLDVAKY-DAIVLDAMMPVMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G V +L E +IAG GA+ +++KPF+ L +R + + + Sbjct: 61 EFLKAARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKN 120 Query: 123 SKDENQFL 130 + +N+ + Sbjct: 121 ATADNEII 128 >gi|254562811|ref|YP_003069906.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Methylobacterium extorquens DM4] gi|254270089|emb|CAX26076.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Methylobacterium extorquens DM4] Length = 270 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R + + G V A + + +V+D M G Sbjct: 30 VLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQ-MRAFLDADRVDLVVLDVMMPGDDGLV 88 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V L D I G GA+ +L+KPF L ++ + + Sbjct: 89 LCRELRS-GRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRT 147 Query: 122 KSKDEN 127 + N Sbjct: 148 RMLPPN 153 >gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + R GF V A + +E + +++D + V Sbjct: 1 MSKILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEED-FDLIILDLMLPEVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR++ + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFDICRQVREI---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QMQK 122 + Sbjct: 117 DRYE 120 >gi|307154499|ref|YP_003889883.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7822] gi|306984727|gb|ADN16608.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7822] Length = 315 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 3/117 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD R + + + G+ V A E + P+ +++D M + F Sbjct: 15 ILVVDDDRSTRTLLKVAMEEEGYRVVTAKDGEECLNEYNR-CQPDMVLLDAVMPEMDGFS 73 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ G ++ + + D + + GA ++ KP + L ++ L Sbjct: 74 CCKRLTEISQGHNIPILMITALDDQDSIDQAFACGAVDYITKPIHWAVLAQRVKRLL 130 >gi|172037291|ref|YP_001803792.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698745|gb|ACB51726.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 329 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 58/136 (42%), Gaps = 7/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 ++++D K+ + ++ G+ V ++ + A + E P+ +++D M + Sbjct: 14 IMVIDDHVDNLKLLSDMLDEQGYEVRQSLNGLTALKSIELSS-PDLILLDLKMPDMDGYT 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ P D+ V ++ + + G ++ KPFN + + +++ Sbjct: 73 VCQKLKKNPKVQDIPVIFISASDEVLDKVKAFSVGGCDYISKPFNLAEVLARVENQLKVK 132 Query: 122 KSK----DENQFLDAI 133 + + D N L+++ Sbjct: 133 RLQQALKDRNTHLESL 148 >gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 246 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD +R + + G+ + +A E E E + + +V+D M + Sbjct: 18 TILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEV-HLVVLDIMMPKIDGI 76 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 77 HMCMKVREQ---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRR 133 >gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 236 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V A E + L++D + G L Sbjct: 8 RILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNY-DLLILDWMLPGKTGL 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ G V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 67 EICQELRRQ--GKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 124 Query: 121 QKSK 124 S+ Sbjct: 125 SSSQ 128 >gi|56416693|ref|YP_153767.1| response regulator PleD [Anaplasma marginale str. St. Maries] gi|222475058|ref|YP_002563473.1| Putative two-component response regulator with GGDEF and receiver domains [Anaplasma marginale str. Florida] gi|255003037|ref|ZP_05278001.1| response regulator PleD [Anaplasma marginale str. Puerto Rico] gi|255004160|ref|ZP_05278961.1| response regulator PleD [Anaplasma marginale str. Virginia] gi|56387925|gb|AAV86512.1| hypothetical protein AM475 [Anaplasma marginale str. St. Maries] gi|222419194|gb|ACM49217.1| Putative two-component response regulator with GGDEF and receiver domains [Anaplasma marginale str. Florida] Length = 455 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD K+ + + V A S EA + +E P+ +++D M G+ Sbjct: 4 KILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLA-REKHPDLILLDVMMPGMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R P T + V + + + G AGA+ FL KP N L +R L + Sbjct: 63 ETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISAGADDFLTKPINDVALFSRIRSLTR 122 Query: 120 MQKSKDENQF 129 + DE + Sbjct: 123 FKILVDELRL 132 Score = 54.8 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 8/94 (8%) Query: 41 CEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKM---IAGARA 95 + + +ID + G F ++ R + L + + + Sbjct: 195 LQNAESYDLFIIDLNF-GGDGLRFCSNFRSNNNTRYTPILVL--LDESDDIGILSRAFEI 251 Query: 96 GANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129 G + +++ P + L + ++ +D + Sbjct: 252 GISDYIMAPVDSNELLARTNVQVKRKRYQDALRM 285 >gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 228 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLEF 62 +L+V+ + + + V A A E E + + +++D + + Sbjct: 5 VLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + D + +L +AG AGA+ ++ KPF E L +R + + Sbjct: 65 TVLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122 >gi|134291928|ref|YP_001115697.1| two component AraC family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135117|gb|ABO59442.1| two component transcriptional regulator, AraC family [Burkholderia vietnamiensis G4] Length = 274 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD ++ + + A +A + ++P+ +++D M + F Sbjct: 22 ILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQA-IVPDLILMDVRMPRMDGFA 80 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + P ++ V L D + IAG GA +++KPF + +R + Sbjct: 81 ACRLLASTPDTQNIPVIILTAAGDLDDRIAGLETGALDYIVKPFEPAEVIARIRNHLKRA 140 Query: 122 KSKD 125 + Sbjct: 141 RRSQ 144 >gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 225 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G++V A E + E +++D + G+ F Sbjct: 2 RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEG-RYLATEGEYALVLLDVMLPGIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + +V V L E + G + GA+ +L+KPF+ L ++ L + K Sbjct: 61 TV-LQAIRRTKNVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRRGK 119 Query: 123 SKD 125 ++D Sbjct: 120 AQD 122 >gi|315290879|gb|EFU50248.1| response regulator receiver domain protein [Escherichia coli MS 153-1] Length = 239 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + + + R D G+ + AR +K+ + +++D + Sbjct: 5 KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121 Query: 120 MQKSKDENQFLD 131 Q++ +N L Sbjct: 122 RQEAMGQNILLA 133 >gi|225174332|ref|ZP_03728331.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170117|gb|EEG78912.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 224 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 1/129 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ ++K+ + + G+ V A +A E + + + ++ D M + Sbjct: 1 MFNILVVEDDRNLQKLMKAVLRQNGYNVLCAEDGVQALELLDSAHV-DLIICDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ V + F+ G G + +++KP + + + + L + Sbjct: 60 GYALTDTLRKANNNLPVLMVTARETFDDKKKGFLVGTDDYMVKPVDMDEMVLRVAALLRR 119 Query: 121 QKSKDENQF 129 + +E + Sbjct: 120 SRIINERRL 128 >gi|239817207|ref|YP_002946117.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803784|gb|ACS20851.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 356 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V ++ G+ V ATS +A + + P+ +++D M G+ F Sbjct: 20 VLIVDDVPDNLAVLHDALDESGYTVLIATSGEQALQRA-AQARPDIVLLDAMMPGIDGFE 78 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + ++ + E ++A AG ++ KP + + M Q Sbjct: 79 VARRLKADAATAHIPIVFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVLARMNVHLQGA 138 Query: 122 KSKDENQF 129 + ++ Sbjct: 139 RRARQDAR 146 >gi|307153265|ref|YP_003888649.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306983493|gb|ADN15374.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 123 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LLV+ S + R++ +L D+G V A EA EF E P+ +V+D M + Sbjct: 1 MREVLLVEDSQVQREMISNLLRDYGLNVSIACDGVEALEFIET-FNPDLVVLDIVMPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P + V + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRLKSDPKTKHLPVVLCSSKGEEFDRYWGMKQGADAYIAKPFQPVELLGTIKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|189467801|ref|ZP_03016586.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM 17393] gi|189436065|gb|EDV05050.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM 17393] Length = 1364 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + + EA + + P+ ++ D M + Sbjct: 1113 RILIVEDEEEILSYLKEELEG-DYRIMTRKNGREAYDTILADT-PDLVISDIMMPEMDGL 1170 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q V V L + E + G GA+++++KPFN E L+ + L Sbjct: 1171 SLCRKIKQNTNVNHVPVILLTAKSKPEDTMEGMATGADAYMVKPFNTELLKSTIANLIAN 1230 Query: 121 QKSKD 125 +K Sbjct: 1231 RKLLK 1235 >gi|189466029|ref|ZP_03014814.1| hypothetical protein BACINT_02393 [Bacteroides intestinalis DSM 17393] gi|189434293|gb|EDV03278.1| hypothetical protein BACINT_02393 [Bacteroides intestinalis DSM 17393] Length = 375 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + L + F + A++ +A E +KE P+ +++D M + F Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVDKEN-PDLVLLDVMMPDMSGF 69 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ P D+ + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 70 EVAQHLKANPKTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129 Query: 121 QKSKD 125 +K Sbjct: 130 VAAKR 134 >gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W] gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820] gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W] gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 224 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATY-DLIVLDIMIPGINGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|317474377|ref|ZP_07933651.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316909058|gb|EFV30738.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1306 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + K ++ F + AT EA + + E LP ++ D M G+ Sbjct: 1055 TILLVEDNEQILKYLTDKLTEY-FNIVTATHGEEALKLVD-EYLPEIVISDIMMPGMDGL 1112 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H+++ L D+FV L + E + G + GA+ ++ KPF+ E L + + Sbjct: 1113 TLCRHIKENSLYADIFVILLTAKTSSEDELRGYKEGADIYIKKPFDTEALINQIMNILNT 1172 Query: 121 QKSKDEN 127 ++ + E Sbjct: 1173 RQKRKEQ 1179 >gi|262279093|ref|ZP_06056878.1| AdeR [Acinetobacter calcoaceticus RUH2202] gi|262259444|gb|EEY78177.1| AdeR [Acinetobacter calcoaceticus RUH2202] Length = 243 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + + + H G V A + +A E + +++D M Sbjct: 13 KLILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIE-IHATQPIDLVILDIKMPELNG 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + +RQ V L + R GA+ F++KPFN + ++ + + Sbjct: 72 WEVLNKIRQKAA---TPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLR 128 Query: 120 MQKSKDE 126 + + Sbjct: 129 RTQQNQQ 135 >gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+V+ R F + G++V A+ E + + +V+D + G+ Sbjct: 3 RRLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHA-TDGGFDAVVLDRMLPGLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G V L ++ + G RAGA+ +L+KPF+ + L + L + Sbjct: 62 LAVIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRP 121 Query: 122 KSKDE 126 + +E Sbjct: 122 QESEE 126 >gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme DSM 15981] gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme DSM 15981] Length = 234 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + G+ VF+A + E EKE + +++D M G+ Sbjct: 5 NILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILEKEE-IHLVLLDIMMPGMNGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + L + I G GA+ +++KPFN L ++ + Sbjct: 64 EMCKKIREN---NNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 Query: 121 QKSKDEN 127 + N Sbjct: 121 YTQLNPN 127 >gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 224 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|91209736|ref|YP_539722.1| DNA-binding transcriptional activator KdpE [Escherichia coli UTI89] gi|91071310|gb|ABE06191.1| transcriptional regulatory protein KdpE [Escherichia coli UTI89] gi|294493448|gb|ADE92204.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli IHE3034] gi|307627881|gb|ADN72185.1| DNA-binding transcriptional activator KdpE [Escherichia coli UM146] Length = 225 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + K+ + GF + A S EA KE +++++D M G+ Sbjct: 3 KKILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCAL-KENHIDFIILDIMMPGMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ +V + +L I G GA+ ++ KPF+ + L +R + Sbjct: 62 LDVCRSIRKS---YNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANFR 118 Query: 120 M 120 Sbjct: 119 K 119 >gi|17230752|ref|NP_487300.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132355|dbj|BAB74959.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 238 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR + + + V A A E + P+ +++D ++ V+ F Sbjct: 5 KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFE-QFNPDLVILDINLPDVIGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++M VFV L D I G GA+ +L KPF L + + + Q+ Sbjct: 64 -NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQR 122 Query: 123 --SKDENQFL 130 + E + L Sbjct: 123 VVTTAEQKRL 132 >gi|87123720|ref|ZP_01079570.1| two-component response regulator [Synechococcus sp. RS9917] gi|86168289|gb|EAQ69546.1| two-component response regulator [Synechococcus sp. RS9917] Length = 242 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + R + G+ V A+ A ++ PN +V+D ++ + Sbjct: 10 RVLLVDDESRLTDLLRLELDVEGYAVDVASDGASALIKARQDPAPNLIVLDWNLPDFTGI 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G + L D + AG + +L KPF+ E L +R + + Sbjct: 70 DICQRIR--SSGVTTPILMLTGHDDIADRVKALDAGVDDYLTKPFSIEELMARLRAMQRR 127 Query: 121 QK 122 + Sbjct: 128 AE 129 >gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 229 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M + +++ + + ++ G+ V+ A E + + L + +++D + Sbjct: 1 MQRIGIIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDL-DLVLLDIMLPKKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +RQ +V + + + D + GA+ ++ KPF + ++ Sbjct: 60 GLEICKEIRQ---TKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARL 116 Query: 119 QMQ 121 + + Sbjct: 117 RRK 119 >gi|282890755|ref|ZP_06299275.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499348|gb|EFB41647.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 410 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + + R + + V A + EA EF +K+ ++ D +M + Sbjct: 7 KTILVVDDTPLQAIMLRRVLVQANYDVLTAKNGAEALEFLKKQK-FALVITDVNMPIMDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ V + E +I G AGA++++ KP+N + L ++EL Sbjct: 66 FKLCRIIKTDLNLRSTPVIICTVLASPEDLIKGIEAGADNYITKPWNNDLLLLRIKELVG 125 Query: 120 MQKS 123 S Sbjct: 126 RSSS 129 >gi|255012649|ref|ZP_05284775.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. 2_1_7] Length = 645 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D S +R RH+F + V EA + E E E P++++ D M Sbjct: 391 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 448 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +P V V L +V+ E +IAG GA+ ++ KPF+ E LR + L + Sbjct: 449 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 508 Query: 120 MQKSKDENQF 129 + DE + Sbjct: 509 RR---DEMRR 515 >gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + ++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|224539619|ref|ZP_03680158.1| hypothetical protein BACCELL_04527 [Bacteroides cellulosilyticus DSM 14838] gi|224518770|gb|EEF87875.1| hypothetical protein BACCELL_04527 [Bacteroides cellulosilyticus DSM 14838] Length = 375 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + L + F + A++ +A E +KE P+ +++D M + F Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVDKEN-PDLVLLDVMMPDMSGF 69 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ P D+ + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 70 EVAQHLKANPKTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129 Query: 121 QKSKD 125 +K Sbjct: 130 VAAKR 134 >gi|189467816|ref|ZP_03016601.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM 17393] gi|189436080|gb|EDV05065.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM 17393] Length = 1331 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 12/140 (8%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +RK F + E + EA K P+ ++ D M + Sbjct: 1073 VLVVEDDEEIRKYICRELAS-DFHMHECANGKEALTLILK-KEPDLIISDIMMPEMDGLT 1130 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF-AM-----R 115 ++Q + + L + E + G GA+++++KPF+ E LR A+ R Sbjct: 1131 LCKKIKQNVTINHIPIILLTAKSREEDNLEGLNMGADAYIVKPFSIEILRKTAINLIKSR 1190 Query: 116 ELPQM--QKSKDENQFLDAI 133 E+ + S+ + Q L + Sbjct: 1191 EILRNSFSGSQMQEQKLKKL 1210 >gi|219847785|ref|YP_002462218.1| response regulator receiver modulated metal dependent phosphohydrolase [Chloroflexus aggregans DSM 9485] gi|219542044|gb|ACL23782.1| response regulator receiver modulated metal dependent phosphohydrolase [Chloroflexus aggregans DSM 9485] Length = 351 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 6/132 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D +R + L +V A S +E LP+ +++D M + F Sbjct: 7 NVLVIDDDPNIRDILSDLLKRERCVVRTAASGQLGIAAAHEE-LPDLILLDVMMPDLDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117 +R PL +V + + D + + G AGA+ FL KP LR +R + Sbjct: 66 TVCRMLRDDPLTAEVPIIMITALDDRKSRLEGMNAGADEFLAKPVELSELRLRVRTMQRI 125 Query: 118 PQMQKSKDENQF 129 + ++ +E + Sbjct: 126 NRYRRLIEERER 137 >gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196] gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291] gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196] gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291] Length = 233 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + GF V++ + EA E C + + ++D + + F Sbjct: 4 NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALE-CIESKDLDMAILDIMLPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L +++ I G GA+ ++ KPFN + ++ + Sbjct: 63 HICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119 >gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R] gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium glutamicum] gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R] Length = 240 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 73 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRR 129 Query: 121 QK 122 + Sbjct: 130 PR 131 >gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 232 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + K+ + G+ V EA+S EA P+ VID + + E Sbjct: 5 KILVVDDERAILKLMQIALKGHGYEVLEASSGEEAL-VVASTKRPDLAVIDWGLPDM-EG 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 I +R++ + + V L + E IA AGA+ +++KPF L +R + Sbjct: 63 IEVLRRLREWSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAA 122 Query: 123 SKDENQFLDA 132 + ++A Sbjct: 123 RVQDEPVIEA 132 >gi|83816384|ref|YP_446589.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|83757778|gb|ABC45891.1| response regulator DrrA [Salinibacter ruber DSM 13855] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+V+ + F + V A A + + + +++D + F Sbjct: 2 LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFEV 61 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +G V + + E + G GA+ ++ KPFN E L ++ + Q Sbjct: 62 LEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQR 117 >gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 243 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ + ++ + GF V E +E + +++D + G+ Sbjct: 3 QRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESY-DLILLDLMLPGMNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + L + +++ G ++GA+ ++ KPF L + + + Sbjct: 62 LDILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRT 121 Query: 122 KSKDE 126 DE Sbjct: 122 SGGDE 126 >gi|301308109|ref|ZP_07214063.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 20_3] gi|300833579|gb|EFK64195.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 20_3] Length = 633 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D S +R RH+F + V EA + E E E P++++ D M Sbjct: 379 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 436 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +P V V L +V+ E +IAG GA+ ++ KPF+ E LR + L + Sbjct: 437 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 496 Query: 120 MQKSKDENQF 129 + DE + Sbjct: 497 RR---DEMRR 503 >gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + + GF A A +E P+ +++D + G + Sbjct: 5 KILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRE-RPDLVLLDLMLPGIDGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +DV + L + D ++ G +GA+ ++ KPF L +R + Sbjct: 64 EVCRLIR---DESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE 120 Query: 121 QKSK 124 ++K Sbjct: 121 GEAK 124 >gi|312114151|ref|YP_004011747.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311219280|gb|ADP70648.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 244 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 6/132 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R + D G V E A + + +V+D M G Sbjct: 7 ILVVDDDRRIRTSLKRFLTDNGMRVTEVADGV-AMFAAVEAGRFDLIVLDVMMPGEDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + V L I G GA+ ++ KPF+ L +R + + Sbjct: 66 LCRRLR---GTSKIPVVLLTAMSGETDRIIGLEIGADDYVCKPFSPRELLARIRAVLRRT 122 Query: 122 KSKDENQFLDAI 133 + + Sbjct: 123 GDAASETRVAGL 134 >gi|322419693|ref|YP_004198916.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320126080|gb|ADW13640.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 453 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD S K + + G+ V A + +A + + P+ ++ D M + F Sbjct: 14 RILIVDDSPTQAKFLELMLVEQGYRVQVARNGSDALDRILSQ-APDLVISDILMPEMDGF 72 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR + D+ + L D ++ GA+ F+ KP++R L +R + + Sbjct: 73 ELCRRVRALDQAGDLPIILLTHLNDPADVLHSLEVGADYFVSKPYSRTLLLSRIRSVLEG 132 Query: 121 QKSKDENQ 128 ++S + + Sbjct: 133 ERSCRQGE 140 >gi|253572356|ref|ZP_04849759.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|251838131|gb|EES66219.1| two-component system response regulator [Bacteroides sp. 1_1_6] Length = 229 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 55/133 (41%), Gaps = 7/133 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + +++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMDISSY--HLILLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 Query: 121 Q---KSKDENQFL 130 +++ + L Sbjct: 123 TATMEAEKAPERL 135 >gi|229017310|ref|ZP_04174214.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] gi|229023487|ref|ZP_04179983.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228737755|gb|EEL88255.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228744011|gb|EEL94109.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] Length = 232 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V EA++ EA + ++ + N ++D + G+ Sbjct: 4 MSAILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSEQTV-NVALLDVMLPGID 62 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L V E + G GA+ ++ KPF+ L ++ L Sbjct: 63 GFQVCKAIR--EENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLL 120 Query: 119 QMQKSKDE 126 + + +E Sbjct: 121 RRIEVHEE 128 >gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725] gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726] gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725] gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 234 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ F V+ A S EA +E+ P+ ++D M G+ F Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEAL-RVAREVNPDAYILDVMMPGMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D V YL + ++ I G GA+ ++ KPF+ E + +R + + Sbjct: 67 ELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGG 126 Query: 123 SKDE 126 + +E Sbjct: 127 AAEE 130 >gi|188588979|ref|YP_001921296.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] gi|188499260|gb|ACD52396.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] Length = 233 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+ D + V + + A EA E E P+ +++D M Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEK-PDLVILDLMMPKIFG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R++ ++V + L + + I G GA+ +++KPF+ + ++ + + Sbjct: 64 TEVCKEIRKI---SNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|158339629|ref|YP_001521018.1| response regulator receiver, CheY-like protein [Acaryochloris marina MBIC11017] gi|158309870|gb|ABW31486.1| response regulator receiver, CheY-like protein [Acaryochloris marina MBIC11017] Length = 425 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + + + V++A+S E + K +LP+ +++D +M + Sbjct: 160 ILVVDDQPNIMNLLTSIMEQDEYEVWQASSGAEGLQMAAK-VLPDLILLDVNMPDMDGYT 218 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P T + + ++ + + G G + ++ KPFN + + + +++ Sbjct: 219 VCQQLKADPQTTAIPIIFVSALDESWDKVKGFSVGGSDYITKPFNTLEVIVRIEDQLKIR 278 Query: 122 KSKDEN 127 + +D+ Sbjct: 279 QIQDQM 284 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + + G+ +++A S EA +LP+ +++D +M + + Sbjct: 306 ILMVDDEPKNLALLTDVLEQEGYEIWQADSGAEAL-RVAGMVLPDLILLDINMPDMQGYD 364 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V ++ + + G + ++ KP L M+ Q+ Sbjct: 365 VCQQLKANAKTKLIPVIFVSALDETWDKVKAFSVGGSDYINKPIQIVELMARMKHQLQI 423 >gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] Length = 234 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|29346142|ref|NP_809645.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338037|gb|AAO75839.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 231 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + + GF + A+ E EL P+ LV D M + F Sbjct: 7 TVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFF-ELRPDVLVADVMMPKMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R V +L ++ G GAN +L KPF + L ++ L Sbjct: 66 EMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALM 121 >gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 240 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 73 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 Query: 121 QK 122 + Sbjct: 130 PR 131 >gi|226943678|ref|YP_002798751.1| Response regulator, transciptional regulatory protein [Azotobacter vinelandii DJ] gi|226718605|gb|ACO77776.1| Response regulator, transciptional regulatory protein [Azotobacter vinelandii DJ] Length = 225 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 1/131 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL+D + ++ GF V AR E P+ +V+D + Sbjct: 1 MSELLLIDDDCELCELLGSWLTQEGFQVRACHDGQAARGAL-AEKTPDVVVLDVMLPDGS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ V L + I G GA+ +L KP + L +R + + Sbjct: 60 GLELLKQLRGNFPDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119 Query: 121 QKSKDENQFLD 131 + + L+ Sbjct: 120 SQPPATSSQLE 130 >gi|325661991|ref|ZP_08150610.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471654|gb|EGC74873.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL + + K + + + V A E+ + +++D M Sbjct: 2 RLLLAEDEKALAKALKAILERSNYSVDAVYDGEAALEYMAAGNY-DGIILDIMMPKKDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G+ + V L + + + + G AGAN +L KPF+ + L +R + Sbjct: 61 TVLKEIRKKGSKIPVLLLTAKGEVDDKVEGLDAGANDYLTKPFHAKELLARLRA-MTRVQ 119 Query: 123 SKDENQFLDA 132 + E+ L A Sbjct: 120 MESEDSQLKA 129 >gi|325568329|ref|ZP_08144696.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325158098|gb|EGC70251.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 228 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L V+ + + L + V A ++ + + LV+D + + Sbjct: 2 RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYA-ASGVYDILVLDIMLPKIDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + L + + + + G AGA+ +L KPF + L +R L + + Sbjct: 61 TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLGRRKD 120 Query: 123 SKDENQFLD 131 + L Sbjct: 121 LDYQEDQLA 129 >gi|269126865|ref|YP_003300235.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM 43183] gi|268311823|gb|ACY98197.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM 43183] Length = 1303 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +G V A + ++ +++D M G+ Sbjct: 1179 RKVLIVDDDVRNVFALASVLEGYGMEVLYAEDGQAGIDLLQRNPDVALVLMDVMMPGLDG 1238 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R MP TD+ + + + +GA+ ++ KP + + L MR + Sbjct: 1239 YATTEAIRGMPQFTDLPIIVITAKAMKGDREKSLASGASDYIPKPVDVDHLLDIMRTWLR 1298 Query: 120 MQKSK 124 ++ Sbjct: 1299 RSAAR 1303 >gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 224 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|94499427|ref|ZP_01305964.1| putative response regulator [Oceanobacter sp. RED65] gi|94428181|gb|EAT13154.1| putative response regulator [Oceanobacter sp. RED65] Length = 560 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 4/133 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD R++ + L D G V EA + EA K + +++D M + Sbjct: 3 ILVVDDQVTNREILKWLLEDEGHQVSEAQNGEEAVNEF-KSGDFDLVLMDVIMPIMDGLE 61 Query: 64 AHVRQMPLGTD---VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R +G + V V +L D + + +G + FL KP+N L+ + ++ Sbjct: 62 ATKRIKEIGQEDNYVPVIFLTALDDAKALKDCLDSGGDDFLSKPYNEVILKAKIHAHLRI 121 Query: 121 QKSKDENQFLDAI 133 ++ + +A+ Sbjct: 122 RELTRDISEKNAV 134 >gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622] gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus] gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + + + GF A++ P+ +++D + Sbjct: 1 MSRILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHP-PDLVLLDLMLPDVA 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++ V + + + G GA+ +++KPF+ L ++ + Sbjct: 60 GSEVLRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVL 119 Query: 119 QMQKSKD 125 + ++D Sbjct: 120 RRADAED 126 >gi|118580478|ref|YP_901728.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] gi|118503188|gb|ABK99670.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] Length = 217 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 4/133 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ D + ++ AT+ EA P+ +++D M + Sbjct: 4 QRILIVDDTPENLQLLYRTLRDE-YDLYGATNGREAL-MIAAAQQPDLILLDIMMPEMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ DV V +L + + G GA ++ KPF ++ + Sbjct: 62 YEVCRRLKSSEELRDVPVLFLTALSEDSDELRGLEIGAVDYITKPFKTAVVKRRIDTHLA 121 Query: 120 MQKSKDENQFLDA 132 +++ D+ +A Sbjct: 122 LKRKTDQLARSNA 134 >gi|186686365|ref|YP_001869561.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186468817|gb|ACC84618.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 431 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + +V + F V+ A S +A + E + LP+ +++D M G+ F Sbjct: 21 VLVVDDNPANLQVLSSFLDQSSFEVWAARSGEKALQRLENDDLPDLILLDVMMPGIDGFE 80 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P D+ V ++ + + G + GA ++ KPF E + + +++ Sbjct: 81 TCKQLKSNPRVQDIPVIFMTALSETADKVKGLQLGAVDYITKPFQHEEVLVRIENHLKLR 140 Query: 122 KSKD 125 Sbjct: 141 NLTK 144 >gi|325262401|ref|ZP_08129138.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324032233|gb|EGB93511.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 224 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 11/139 (7%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + K+ R F + V A EA + P+ +++D +M G+ Sbjct: 1 MQYKILIVDDDTELLKMLRSYFEIKKYEVITACCGAEAFDRIR--PEPDIILLDINMPGI 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R + +L +V+ + + G +G + ++LKPF+ + L + Sbjct: 59 DGLDVCRQIR---DKVMCPIIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKELEARITAH 115 Query: 118 P---QMQKSKDENQFLDAI 133 + + + E +FL+ + Sbjct: 116 LKREERHRGQTEYRFLNGL 134 >gi|317125394|ref|YP_004099506.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589482|gb|ADU48779.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + + GF V +A A P+ +V+D + G Sbjct: 1 MSRILVVEDDLTINQTVTDRLRAEGFDVVQAHDGPRAV-AAHATHEPDLVVLDVMLPGFD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE ++ V V L D + G GA+ ++ KPF L +R L Sbjct: 60 GLEVCRRIQAS---RAVPVLMLTARDDETDLPVGLAVGADDYVTKPFRMRELVARVRALL 116 Query: 119 QMQKSKDEN 127 + + + Sbjct: 117 RRVERAGQL 125 >gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 243 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ + ++ + GF V E +E + +++D + G+ Sbjct: 3 QRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESY-DLILLDLMLPGMNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + L + +++ G ++GA+ ++ KPF L + + + Sbjct: 62 LDILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRT 121 Query: 122 KSKDE 126 DE Sbjct: 122 SGGDE 126 >gi|271965271|ref|YP_003339467.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508446|gb|ACZ86724.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R F V A A + P+ +V+D + + Sbjct: 1 MTRVLVVDDEPQILRALRINLLARHFEVAVAPDGGSALRQA-ADWHPDLVVLDLGLPDID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V + L + + AGA+ ++ KPFN E L MR + + Sbjct: 60 GV-DVIHGLRGWTAVPIIVLSGRAGNQDKVEALDAGADDYVTKPFNIEELLARMRAVTRR 118 Query: 121 QKSKD 125 +D Sbjct: 119 TAVQD 123 >gi|291287384|ref|YP_003504200.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884544|gb|ADD68244.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 234 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD + K+ D+ + V + E K P+ +++D M Sbjct: 4 NILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLM-LEKYLKSSKPSVIILDIMMPHINGF 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +D+ V L + E IAG AGA+ +L KPF L + + + Sbjct: 63 DLCKKLRKN---SDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKR 119 >gi|225018010|ref|ZP_03707202.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum DSM 5476] gi|224949216|gb|EEG30425.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum DSM 5476] Length = 251 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + K G+ A++ E P+ +++D + + Sbjct: 28 RILIIEDDTSILKFLSISLKTNGYRYDAASTGIEGLSLFLANN-PDVILLDLGLPDIDGL 86 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + Q+ +D+ + + + + GA+ ++ KPF+ L +R + + Sbjct: 87 TV-LEQVRQSSDIPIIIVSARGQEREKVEALDLGADDYITKPFHIGELLARIRVALRKHQ 145 >gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM 17244] gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM 17244] Length = 233 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + K ++ G+ +FEA EA EKE + +V+D M + Sbjct: 5 NILVVDDDKEIVKAINIYLSNEGYNIFEAYDGYEALSVLEKEE-IHLIVLDIMMPKLDG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 IA + ++ +V V +L + + I G GA+ ++ KPFN L ++ L + Sbjct: 63 IATITKVREKQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLIRR 120 >gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 229 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E + +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDY-DLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|120610179|ref|YP_969857.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120588643|gb|ABM32083.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 232 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + V GF A P+ ++D + GV Sbjct: 6 QRILVVEDEPDIADVVLDYLRHSGFEAEHLAEGPAALARLTGPTPPDLTLLDIMLPGVDG 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ TD + L V+ + G GA+ ++ KPF+ + +R + + Sbjct: 66 L-EVLRQARRHTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRR 123 >gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 234 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ G +V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQ--TGNTTYVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|330448384|ref|ZP_08312032.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492575|dbj|GAA06529.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 221 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + D G V A + + + + +++D + + Sbjct: 1 MSKILVVDDDVQLCALLTEVLEDEGHEVNCVHCGESALTYLQSTGV-DLVLLDVMLPNLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L D M+ G +AGA+ FL+KPF E L + + + Sbjct: 60 GMQVARRICQRFA-TPILMLTALGDETTMLDGLQAGADQFLVKPFKVEELLARISAILRR 118 Query: 121 QKSKDENQFL 130 + + Q L Sbjct: 119 VGLERQRQCL 128 >gi|307944203|ref|ZP_07659544.1| protein PetR [Roseibium sp. TrichSKD4] gi|307772549|gb|EFO31769.1| protein PetR [Roseibium sp. TrichSKD4] Length = 232 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LLLVD +R + L + G+ V A + EA C L + L++D M G L+ Sbjct: 13 LLLVDDDQRIRDLLGRLLAENGYRVTTAANAQEA-RTCLSGLSFDLLILDVMMPGETGLD 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R +DV + L D IAG GA+ +L KPF + L + + + Sbjct: 72 LASWLR---DHSDVPILMLTARSDASDRIAGLEVGADDYLAKPFEPKELLLRLSAILRR 127 >gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] Length = 231 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 7/128 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M +L++D + ++ + G+ +++A EA + +++D M Sbjct: 2 MKRNILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLH-QIDLMILDIMMPKR 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 LE VR+ V + L + + I G GA+ +++KPFN L ++ L Sbjct: 61 NGLEVCQQVREE---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKAL 117 Query: 118 PQMQKSKD 125 + + Sbjct: 118 LRRSSFQQ 125 >gi|269839127|ref|YP_003323819.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269790857|gb|ACZ42997.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 231 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ G V A ++ EA E P+ +++D + Sbjct: 8 RVLVVEDEPPILRMLASNLRSHGMQVLTAATLREAMEK-HATFRPDVILLDLRLPDGRG- 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +RQ+ L + V + L + + +A GA+ +L KPF + L +R + Sbjct: 66 EELIRQVRLTSTVPIIVLSAYGEEGQKVAALEMGADDYLTKPFGVKELLARIRVALRRAA 125 Query: 123 SKDENQ 128 K + Sbjct: 126 GKASGE 131 >gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 833 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 12/126 (9%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + + + V + + G V A + EA E + + +++D M G +E Sbjct: 573 VLVVEDNPVNQTVAKRMLEHVGHSVTVANNGEEALEAID-NRHFDVVLMDVQMPVMGGIE 631 Query: 62 FIAHVRQMPL---------GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 +R V + + +AG + ++ KP E L Sbjct: 632 ATQAIRAREARRSWVLAGDWKPVPIIAMTAHAMEGDRERCLQAGMDDYVAKPVRPEALFA 691 Query: 113 AMRELP 118 A+ + Sbjct: 692 AIERVL 697 Score = 54.4 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 8/132 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV---CEAREFCEKELLP---NYLVIDES 55 +L+ ++ + A S +A P + D Sbjct: 417 TRVLVASANAAFADFLCATLQEAALRAEAACSGVAVEQALARAADGSDPFAFLLMDADLP 476 Query: 56 MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSF-LLKPFNRETLRFAM 114 G D + + + G + L KPF+ E L + Sbjct: 477 EPGGFALAQRFAAAWPRPDRIIPMMASHSQRNDALRCEELG-LGYRLAKPFSAEDLLAVL 535 Query: 115 RELPQMQKSKDE 126 R ++ E Sbjct: 536 RMAQGGEREAAE 547 >gi|110598537|ref|ZP_01386806.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110339841|gb|EAT58347.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 230 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+V+ + ++ + GF +++ +A + + +++D + G+ F Sbjct: 6 LLVVEDDPHLAQLLGYNLERAGFKCHVSSTGEDALLQLVR-KSFDLVLLDVMLPGIDGFE 64 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +RQ L D+ + L + + I G G + +++KPF+ L +R + + Sbjct: 65 VCRQIRQNQLFRDLPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELILRIRAIFKRD 124 Query: 122 K 122 + Sbjct: 125 R 125 >gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 245 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + + + D + + + EA + E + +++D M V Sbjct: 19 RRILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAF-NESKFDVVILDVMMPYVDG 77 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F A R +DV + L + ++ G GA+ ++ KPF L + + + Sbjct: 78 FEACQRIRER-SDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRV 136 Query: 122 K 122 + Sbjct: 137 E 137 >gi|119776626|ref|YP_929366.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119769126|gb|ABM01697.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 120 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ GF V EA + EA + + + ++ D +M + Sbjct: 1 MKKILAVDDSASMRQMVGFTLKTAGFDVTEACNGDEALKAAQAGQY-DLVISDVNMPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I ++R +P + L E +K G AGA +++KPFN E L +R++ Sbjct: 60 GITLIRNLRTLPAYKFTPLLMLTTESGGDKKQEGRAAGATGWIVKPFNPEQLLATVRKVL 119 >gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + GF +A + E P+ +++D + G + Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTE-RPDLILLDLMLPGVDGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E VR V + L D ++ G +GA+ +++KPFN + L +R + Sbjct: 63 EICTRVRAESG---VPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLR 118 >gi|310827238|ref|YP_003959595.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612] gi|308738972|gb|ADO36632.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612] Length = 223 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K R L + GF V A + EA E + + +++D + Sbjct: 1 MRRILIVEDERQIVKHLRALLEEEGFSVDTAATRAEA-ESALEGDRFDLILLDLMLPDGN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + G + V +L D ++ G GA+ ++ KPF L ++ + Sbjct: 60 GYALCTEILHRG-NTPVIFLTALDDEASIVTGFNLGADDYITKPFKPMELVARVKNSLRR 118 Query: 121 QKSKD 125 Sbjct: 119 SGRAQ 123 >gi|295085734|emb|CBK67257.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1311 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++LL+V+ +R R F + V + EA C P+ ++ D M G Sbjct: 1040 NTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDVMMPGIRG 1097 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E V++ P + + V L + + E ++ G + GA+ ++ KPF+ E L+ + L Sbjct: 1098 DELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKLKEQGLID 1157 Query: 120 MQKSKDENQFLDAI 133 + + + AI Sbjct: 1158 NRNRQRQFFMRQAI 1171 >gi|254994902|ref|ZP_05277092.1| response regulator PleD [Anaplasma marginale str. Mississippi] Length = 455 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD K+ + + V A S EA + +E P+ +++D M G+ Sbjct: 4 KILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLA-REKHPDLILLDVMMPGMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R P T + V + + + G AGA+ FL KP N L +R L + Sbjct: 63 ETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISAGADDFLTKPINDVALFSRIRSLTR 122 Query: 120 MQKSKDENQF 129 + DE + Sbjct: 123 FKILVDELRL 132 Score = 54.8 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 8/94 (8%) Query: 41 CEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKM---IAGARA 95 + + +ID + G F ++ R + L + + + Sbjct: 195 LQNAESYDLFIIDLNF-GGDGLRFCSNFRSNNNTRYTPILVL--LDESDDIGILSRAFEI 251 Query: 96 GANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129 G + +++ P + L + ++ +D + Sbjct: 252 GISDYIMAPVDSNELLARTNVQVKRKRYQDALRM 285 >gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 9/136 (6%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ ++R+ F + V EA + A E E+ + + +V+D M + Sbjct: 1 MKRSILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFER-VSVDLIVLDIMMPEM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ +DV + + + E + G GA+ ++ KP + L L Sbjct: 60 DGWSVCRRIREK---SDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANAL 116 Query: 118 PQMQKSK--DENQFLD 131 + + E + L Sbjct: 117 MKRTERTVGREAELLQ 132 >gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC BAA-613] gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC BAA-613] Length = 234 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + G+ VF+A + + E KE + + +++D M G+ Sbjct: 5 NILVVDDEKEIADLIEIYLVSDGYKVFKAENAAKGLEIISKEEV-HLVLLDIMMPGMNGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + L + I G GA+ +++KPFN L ++ + Sbjct: 64 EMCKKIREN---NNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 Query: 121 QKSKDEN 127 + N Sbjct: 121 YTQLNPN 127 >gi|29346892|ref|NP_810395.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298386461|ref|ZP_06996017.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|29338790|gb|AAO76589.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298260838|gb|EFI03706.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 229 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + +++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM--DISSYHLILLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|191170729|ref|ZP_03032281.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Escherichia coli F11] gi|300974717|ref|ZP_07172706.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300981340|ref|ZP_07175476.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301050614|ref|ZP_07197482.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|190908953|gb|EDV68540.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Escherichia coli F11] gi|300297680|gb|EFJ54065.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300308850|gb|EFJ63370.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300409000|gb|EFJ92538.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|307629398|gb|ADN73702.1| DNA-binding response regulator [Escherichia coli UM146] gi|324010967|gb|EGB80186.1| response regulator receiver domain protein [Escherichia coli MS 60-1] Length = 239 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + + + R D G+ + AR +K+ + +++D + Sbjct: 5 KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121 Query: 120 MQKSKDENQFLD 131 Q++ +N L Sbjct: 122 RQEAMGQNILLA 133 >gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1476 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D + GAN+++ KPF++E L + +L Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1336 RKLFRERIRQQMENQ 1350 >gi|257440237|ref|ZP_05615992.1| DNA-binding response regulator RegX3 [Faecalibacterium prausnitzii A2-165] gi|257197271|gb|EEU95555.1| DNA-binding response regulator RegX3 [Faecalibacterium prausnitzii A2-165] Length = 234 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R++ G EA S A E++ + ++D + G+ Sbjct: 1 MVKVLVVEDEASIREMIALNLRLAGMEAVEADSAEAALPLLEQKPGCDAAILDVMLPGMN 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L + + I G GA+ ++ KPF+ L + L Sbjct: 61 GFSLCETIRRTD--QKIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALC 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 240 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 14 RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 73 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 Query: 121 QK 122 + Sbjct: 130 PR 131 >gi|119773207|ref|YP_925947.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119765707|gb|ABL98277.1| response regulator receiver modulated diguanylate cyclase [Shewanella amazonensis SB2B] Length = 305 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + + + EA+S + + E P+ +++D M Sbjct: 6 TVLVVDDVKTNLMIMGQSLKGL-YQILEASSGAQCLKLARSEPQPDLILLDVVMPDLDGY 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P ++ + ++ + E G GA ++ KP +R + Q+ Sbjct: 65 EVCRALKSDPATAEIPIIFVTGKDSDEDEQYGLELGAVDYITKPIRPAIVRARVCAHIQL 124 Query: 121 QKSKDENQFLD 131 ++ +D Q + Sbjct: 125 KQQRDRLQSMA 135 >gi|323493714|ref|ZP_08098834.1| chemotaxis protein CheY [Vibrio brasiliensis LMG 20546] gi|323312054|gb|EGA65198.1| chemotaxis protein CheY [Vibrio brasiliensis LMG 20546] Length = 119 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A +A + ++ D +M + Sbjct: 1 MTKILAVDDSVSIRQMVSHTLRDAGYDVETANDGRDALSKV-TSAKFDVVISDVNMPNMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R+ P + + L E +K G AGA +L+KPFN +TL ++ + Sbjct: 60 GFELVKALREKPQYKFIPILMLTTETSTDKKQQGKSAGATGWLVKPFNPDTLLKTLKRVI 119 >gi|317495700|ref|ZP_07954065.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914153|gb|EFV35634.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 229 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +LLVD + ++ + G+ V A EA E +K + ++ D M + Sbjct: 3 NKILLVDDEIEITEINKRYLEQDGYDVDIANDGKEALEKYKKNKY-SLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 + L + ++ + I GA+ +++KPF+ L ++ + + Sbjct: 62 YDLISEVQYLDEEQPFLFITAKTTEPDKIYALSLGADDYIVKPFSPRELVLRVKNILRRI 121 Query: 121 QKSKDEN 127 +K+ EN Sbjct: 122 EKNSSEN 128 >gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium 3_1_46FAA] Length = 239 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +++VD + + L G+ V A EA E+ + + +++D M + Sbjct: 11 VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPV-DLILLDVMMPRLNGLS 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A ++ + V L + + ++G GA+ ++ KP+N L ++ + ++ Sbjct: 70 ALMKLREKYR-IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRA 128 >gi|254784488|ref|YP_003071916.1| chemotaxis protein CheA [Teredinibacter turnerae T7901] gi|237687117|gb|ACR14381.1| putative CheA signal transduction histidine kinase [Teredinibacter turnerae T7901] Length = 2283 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++++VD S VRKV GF V A +A + + +P+ +++D M + Sbjct: 2159 KTVMVVDDSVTVRKVTTRFLEREGFNVITAKDGVDALRVLQDDDIPDLMLLDIEMPRMDG 2218 Query: 62 FIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + + + + G N +L KP+ E L ++ EL + Sbjct: 2219 FEVAKNIRSSSRLRHLPIIMITSRTGDKHRERAMSLGVNKYLGKPYQEELLLSSIAELLE 2278 Query: 120 MQKSK 124 K++ Sbjct: 2279 EAKAR 2283 >gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] Length = 223 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ R G V EA EAR + V+D + G Sbjct: 1 MARVLIVDDDPAILEILRAYLGAEGHEVLEAQDGQEARALL---PRADVAVMDWMLPGAA 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D+ + L + E + G G + +++KPF+ + +R L + Sbjct: 58 GPVLAREARAAGLDLPILMLTARGEEEDKLHGLEEGVDDYVVKPFSPREIVARVRALLRR 117 Query: 121 QKSKDENQ 128 + + Sbjct: 118 VGVHQDVR 125 >gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + HL G+ V A+ + + L++D + + Sbjct: 2 RILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQY-DLLILDRMLSKMSGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 61 EICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|162453349|ref|YP_001615716.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161163931|emb|CAN95236.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 235 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ ++KV + G V A E + P+ +++D + Sbjct: 1 MARILVIEDEPALQKVLDYNLRQAGHEVLLAGQGGEGVRLAVDQ-RPDLVLLDLMLPDIP 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++Q + V + D I G GA +++KPF+ L ++ + Sbjct: 60 GTEVCRALQQSDGTQRIPVMIVSARGDEVDRIVGFELGAVDYVVKPFSVRELVLRVQAVL 119 Query: 119 QMQKSKDENQF 129 + KS + + Sbjct: 120 RRAKSSGDGER 130 >gi|222053126|ref|YP_002535488.1| multi-sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221562415|gb|ACM18387.1| multi-sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 516 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + D G+ A E E +++ + +++D M + Sbjct: 4 KKILIVDDEPDIALILKLQLEDAGYRTAIARDGVEGLEAIDRD-RFSLVLLDIKMPRIDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R L +V V + + + + GA ++ KPF+ E + + Q+ Sbjct: 63 LQMLERVQNLHPEVAVVMMTAHGSEDIAVEAMKNGALDYIAKPFSTEDVLQKVERAIQLN 122 Query: 122 KSKDENQFLD 131 K+K +N L Sbjct: 123 KAKRDNIRLQ 132 >gi|95929326|ref|ZP_01312069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] gi|95134442|gb|EAT16098.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfuromonas acetoxidans DSM 684] Length = 449 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+LLVD +R+V + G+ V A S EA + P +V D MEG+ + Sbjct: 4 SVLLVDDDASMRRVIEFTLQEAGYQVLTAASGEEALPLF-RHHQPALVVTDVRMEGMSGY 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V + E+ + ++GA +L KPF+ E LR A+ + + Sbjct: 63 QVLEKVLAESPATLVIIITAYSTVEQAVGAMKSGAYDYLTKPFSGEQLRLAVARAFEYRA 122 Query: 123 SKDENQFLDAI 133 + EN L + Sbjct: 123 LRRENTQLHEV 133 >gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160] Length = 234 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|319640208|ref|ZP_07994934.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317388195|gb|EFV69048.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1403 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + ++ + V EA+ EA + + + +++V D M + Sbjct: 1150 TILVVEDNKDMRDYIRSILAEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1207 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E I R G + +LLKPF+ L + + + Sbjct: 1208 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1267 Query: 121 QKSKDE 126 +K + Sbjct: 1268 RKRFQQ 1273 >gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304] gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304] Length = 241 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + G+ A P+ +++D + + Sbjct: 13 SVLVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIA-ASYKPDLILMDIMLPVMDGL 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R V V L D + G AGA+ ++ KPF+ L + L + + Sbjct: 72 EATKRITAARP-VPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVE 130 Query: 123 SKD 125 Sbjct: 131 RAK 133 >gi|284032333|ref|YP_003382264.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811626|gb|ADB33465.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 237 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD V V G+ +A E ++ P+ +V+D + G+ Sbjct: 3 TRVLVVDDDPTVSNVVSAYLTKAGYDARVVPDGVKAVEVW-QQWKPSVVVLDVMLPGLSG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + E + G GA+ +++KPF+ L ++ L + + Sbjct: 62 LEVLRRLRSADDGAAVIMLSARGEEEDRLVGLEVGADDYVVKPFSPRELVLRVQALLRRE 121 Query: 122 KSKD 125 + Sbjct: 122 ERLA 125 >gi|90418271|ref|ZP_01226183.1| response regulator receiver, transcriptional regulatory protein [Aurantimonas manganoxydans SI85-9A1] gi|90337943|gb|EAS51594.1| response regulator receiver, transcriptional regulatory protein [Aurantimonas manganoxydans SI85-9A1] Length = 246 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L++D +R + ++ F V A EAR E L + LV+D M G I Sbjct: 27 ILVIDDDRRIRSLLLRFLSEQQFRVSVAADAAEARRILE-GLDFDLLVVDVMMPGESG-I 84 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 VR + V L + E I G AGA+ +L KPF+ L + + + S Sbjct: 85 ELVRSLRTNRQAPVLMLTARSETEHRIEGLEAGADDYLAKPFDPRELLLRVNNILRR-GS 143 Query: 124 KDENQFLDAI 133 + Q L+ I Sbjct: 144 QAPIQKLEHI 153 >gi|75906872|ref|YP_321168.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700597|gb|ABA20273.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 387 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+++ VR+ L GF + EA + + ++E +P+ ++ D M Sbjct: 1 MNKILVIEDDIHVRQNILDLLEGEGFNILEAHNGLLGVQLAQEE-IPDLIICDVMMPELD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-EL 117 E + +RQ P + + +L + D G GA+ +++KPF R L A+ L Sbjct: 60 GYEVLKVLRQCPETAIIPLIFLTAKSDKNDFRQGMEMGADDYIIKPFTRAELLAAIACRL 119 Query: 118 PQMQKSKDENQF 129 + K ENQ Sbjct: 120 EKHITIKQENQR 131 >gi|134299369|ref|YP_001112865.1| two component sigma-54 specific Fis family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052069|gb|ABO50040.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum reducens MI-1] Length = 448 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D + G+ V AT E E P+ +++D M + Sbjct: 4 RILVIDDEERMCWALERALGHEGYQVITATRGLRGIELA-HETEPSLVILDLKMPDITGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + +++ V + E I + GA ++ KPF + L+ +++ + Sbjct: 63 EVLKKIKSINSNIPVIMITAHGTIETAIEAMKFGATDYITKPFKLDELKVQVKQALHLSN 122 Query: 123 SKDENQFL 130 +++ FL Sbjct: 123 LENQVDFL 130 >gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 227 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G V A +E P+ +++D + G+ Sbjct: 6 RVLVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAF-RETRPDVVLLDVMLPGIDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L D ++ G +GA+ +++KPF + L +R + Sbjct: 65 EVCRRIRAESG---VPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRR 121 >gi|325275465|ref|ZP_08141393.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099396|gb|EGB97314.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 240 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+VD +R++ D G+ V EA + R + + + +V+D + G Sbjct: 3 TTLLVVDDDDEIRELLCDYLADAGYNVLEAADGEQMRAQMARHTV-DLVVLDLMLPGEDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 + RQ+ + V L + I G GA+ +L KPF L ++ + + Sbjct: 62 L-SLCRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRP 120 Query: 121 QKSKDENQ 128 Q+ + + Q Sbjct: 121 QRLETQAQ 128 >gi|307822332|ref|ZP_07652564.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] gi|307736898|gb|EFO07743.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] Length = 366 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD S V L + V ATS +A P+ +++D M G+ Sbjct: 7 QTILIVDDSPENLTVLSELLQPI-YRVRVATSGRKALRIAGTAPCPDLIMLDVMMPGMDG 65 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 H+R P D+ V ++ E + G GA ++ KP + + + Sbjct: 66 YQVFEHLRADPSTQDIPVIFVTAMDSTEAELHGLDVGAVDYITKPIVPPVVLARVHTQLE 125 Query: 120 MQKSKD 125 +++++D Sbjct: 126 LKQARD 131 >gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 246 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A S A ++ P+ +V+D + + F Sbjct: 21 RVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTA-RQFRPDAVVLDVMLPDLDGF 79 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V V +L E+ +AG G + ++ KPF+ E + +R L + Sbjct: 80 QVLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 137 >gi|220912548|ref|YP_002487857.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219859426|gb|ACL39768.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 240 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + K R G+ V A+ A + P+ L++D + + Sbjct: 19 RVLVVDDDPHLLKALRITLAAHGYAVDAASDGASALVAASRH-APDLLILDLGLPDMDGV 77 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + V L + AGA+ ++ KPF + L +R L + Sbjct: 78 -DVLRDLRRWSTLPVLVLSARHGSADKVGALDAGADDYITKPFGLDELLARLRALQRR 134 >gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 1 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 59 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 Query: 121 Q 121 Sbjct: 118 H 118 >gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD K+ ++ + G+ V A + E+ P+ +++D M + F Sbjct: 2 NILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHN-PDLILLDIMMPKIDGF 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + +L + + G + G + +L+KP+ L + + + Sbjct: 61 DVCRQIRRSSE---VPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRR 117 Query: 121 QKS 123 + + Sbjct: 118 RNA 120 >gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 227 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ +R R F F V E S E E P+ ++D + G+ Sbjct: 1 MK-ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEK-PDIAILDVMLPGMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + L + + I G + GA+ ++LKPFN + ++ L + Sbjct: 59 GFEVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118 Query: 121 QKSKDEN 127 + +E Sbjct: 119 LEGINEE 125 >gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1347 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL + + + R G+ V A EA + E P+ +++D M G+ Sbjct: 1223 RRILLAEDNEVNRVTLSDYLVAQGYEVRVACQGKEALQIA-AEWRPDLIIMDIQMPGLDG 1281 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R + + AGAN + KP L + + Sbjct: 1282 LEVIQRLRADAAFAATPIIAVTALAMPGDRERCLSAGANDYFAKPIRLRQLVERIEQFL 1340 Score = 78.7 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+++ S + + A E + L P+ +++D M E Sbjct: 1096 LIIEDSATTADQLARYLEELQIQPVICSYGKGAVEQVQA-LRPDLILLDVQMPDRSGWEI 1154 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +A +R+ P V V + + + E G AGA ++L+KP NR LR A+ ++ Sbjct: 1155 LADLRRDPDLRQVPVIIVSVVDEPE---RGLAAGAAAYLVKPINRLMLRRALSQI 1206 >gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 268 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I G GA+ ++ KPF+ L + + + Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR 157 Query: 121 QK 122 + Sbjct: 158 PR 159 >gi|229824516|ref|ZP_04450585.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271] gi|229786117|gb|EEP22231.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271] Length = 237 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL + + +V G+ V A +A + ++ + + +++D M + Sbjct: 2 RILLAEDEQQLARVVMTALAHEGYQVDWAKDGQQAVQLA-QQTVYDLMILDIMMPVKDGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R V L + + + G AGA+ +L KPF+ + L +R + + Sbjct: 61 EALKEIRASGHTNH--VIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118 >gi|189424753|ref|YP_001951930.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189421012|gb|ACD95410.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 472 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 LL++D +R+ R + F V + A E ++E + +V D M G Sbjct: 5 KKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEP-FDLVVTDLKMPGISG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E + ++++ D+ V ++ + + + GA ++ KPF E + +R + Sbjct: 64 MEVLKAIKEIQ--PDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALE 121 Query: 120 MQ 121 + Sbjct: 122 QR 123 >gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 237 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 LL + +R G+ V EA K P+ LV+D M G+ Sbjct: 2 LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTP-PDVLVLDVMMPGIDGLQV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G + L V+ + IAG AGA+ +++KPF+ E + +R L + Sbjct: 61 CRVLRA--EGDRTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116 >gi|294777617|ref|ZP_06743068.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448685|gb|EFG17234.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1408 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + ++ + V EA+ EA + + + +++V D M + Sbjct: 1155 TILVVEDNKDMRDYIRSILAEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E I R G + +LLKPF+ L + + + Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272 Query: 121 QKSKDE 126 +K + Sbjct: 1273 RKRFQQ 1278 >gi|156975066|ref|YP_001445973.1| response regulator [Vibrio harveyi ATCC BAA-1116] gi|156526660|gb|ABU71746.1| hypothetical protein VIBHAR_02792 [Vibrio harveyi ATCC BAA-1116] Length = 225 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + F G + A + + E + +++D + + Sbjct: 1 MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + M+ G + GA+ +L KPF+ + L M L + Sbjct: 60 GLTMCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119 Query: 121 QK 122 + Sbjct: 120 YR 121 >gi|149376013|ref|ZP_01893779.1| DNA-binding response regulator GltR [Marinobacter algicola DG893] gi|149359650|gb|EDM48108.1| DNA-binding response regulator GltR [Marinobacter algicola DG893] Length = 238 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD +R++ + G+ V A E + +V+D + G Sbjct: 6 TSILVVDDDLAIRELLHEHLSRVGYDVMTAAEGDS-MRRTLSEARVDLIVLDVMLPGDDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R++ + V + L D + G GA+ +L KPF+ L+ ++ L + Sbjct: 65 FTLC-REIREHSQVPIIMLTASSDETDRVVGLEIGADDYLAKPFSARELQARVKALLRR 122 >gi|116872456|ref|YP_849237.1| CheY family two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741334|emb|CAK20456.1| two-component response regulator, CheY family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 220 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+ + + V + G+ V A + EA F +KE + +++D M + Sbjct: 1 MEKILIAEDDVTILGVITAFLTEAGYQVTTAQNGIEAYHFFQKE-AFDLIIMDIMMPSMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + + + + G GA+ ++ KPF+ L ++ L Sbjct: 60 GYTLTELIRS---TSSAPILMMTALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQVLL 116 Query: 119 QMQKSKD 125 + K+ Sbjct: 117 RRSNQKE 123 >gi|328953029|ref|YP_004370363.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] gi|328453353|gb|AEB09182.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] Length = 242 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+LL++ +R+ R G+ + EA + E +P+ +++D + + Sbjct: 1 MKPSILLIEDDANIRRFLRLTLVTQGYELIEAETGQEGLAQAFA-RVPDLILLDLGLPDM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I ++Q+ + V V L + I AGA+ +L KPF L +R + + Sbjct: 60 DG-IDIIKQIREWSQVPVIVLSARGQEREKIINLDAGADDYLTKPFGMGELLARIRVVLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|320107338|ref|YP_004182928.1| Fis family two component sigma54 specific transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925859|gb|ADV82934.1| two component, sigma54 specific, transcriptional regulator, Fis family [Terriglobus saanensis SP1PR4] Length = 468 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 4/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVL 60 +L+VD +R+V + + G+ V A+ EA +E P ++ D M L Sbjct: 4 KHILVVDDDSSLRRVMKMQLEEAGYEVSLASDGEEAWIKL-QETEPYLVITDLRMPTTGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + + G V + E + + GA ++ KP + + L + + Sbjct: 63 ELLRCI--TKEGLQTTVIVITAFGTVETAVEAMKLGAYDYVTKPVDFDALLVVVHRAMER 120 Query: 121 QKSKDENQFLDA 132 Q +E + L + Sbjct: 121 QNLLEEVRNLRS 132 >gi|257866993|ref|ZP_05646646.1| two component transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873327|ref|ZP_05652980.1| two component transcriptional regulator [Enterococcus casseliflavus EC10] gi|257801049|gb|EEV29979.1| two component transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807491|gb|EEV36313.1| two component transcriptional regulator [Enterococcus casseliflavus EC10] Length = 228 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L V+ + + L + V A ++ + + LV+D + + Sbjct: 2 RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYA-ASGVYDLLVLDIMLPKIDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + L + + + + G AGA+ +L KPF + L +R L + + Sbjct: 61 TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120 Query: 123 SKDENQFLD 131 + L Sbjct: 121 LDYQEDQLA 129 >gi|268316384|ref|YP_003290103.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333918|gb|ACY47715.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 236 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+++ VR+ G+ V + RE + +++D + G Sbjct: 5 RLLIIEDDAEVREALALCLETAGYEVDAVATGEAGREKAITVPGYDLIILDARLPGRDGF 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ G V L D E + G GA+ ++ KPF E L + + + Sbjct: 65 EVLRELRE-EDGVMTPVLMLTGLNDREHRLKGFELGADDYVAKPFAPEELLARVEAVLRR 123 Query: 121 QKSKDENQ 128 K + + + Sbjct: 124 AKRRPQPE 131 >gi|154497232|ref|ZP_02035928.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC 29799] gi|150273631|gb|EDN00759.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 1/129 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + +R + D G+ A + EA E E + + +++D M + Sbjct: 1 MFRILVVEDDNGIRMLMEDALADAGYEPVLACNGLEALEVLESKH-IDLIILDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + G D+ V + + G GA+ +++KPF E + + L + Sbjct: 60 GYELLRQIRESGMDMPVLLVTAKQTLSDKKKGFLLGADDYMVKPFEEEEMLLRVAALLRR 119 Query: 121 QKSKDENQF 129 K E + Sbjct: 120 AKILTERKL 128 >gi|153954095|ref|YP_001394860.1| KdpE [Clostridium kluyveri DSM 555] gi|146346976|gb|EDK33512.1| KdpE [Clostridium kluyveri DSM 555] Length = 238 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSV-CEAREFCEKELLPNYLVIDESME 57 M+ +L+V+ +RK+ G+ A + E ++ P+ +++D + Sbjct: 1 MNKPLILVVEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQ--PDIIILDLGLP 58 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++++ ++V + + + I AGA+ +L KPF+ E L +R Sbjct: 59 DMDGV-EIIKKVRTWSNVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVS 117 Query: 118 PQMQK 122 + + Sbjct: 118 LRRIR 122 >gi|120601068|ref|YP_965468.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120561297|gb|ABM27041.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris DP4] Length = 459 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD R + R + +G+ EA A E +E + +++D M + Sbjct: 5 TVLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKV-REKARDAVLMDVRMARMGGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + V V + E + R GA +L KP + + LR + + Sbjct: 64 EALRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALDHTR 123 Query: 123 SKDENQFLDA 132 EN+ L + Sbjct: 124 LVSENRELKS 133 >gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 HVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|317489938|ref|ZP_07948430.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325829806|ref|ZP_08163264.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|316910936|gb|EFV32553.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487973|gb|EGC90410.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 234 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + ++ + V A + E E+ P+ +++D M + F Sbjct: 4 TVLIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLER-KSPSVILVDLMMPEMNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ L ++ + + + G GA+ ++ KPF+ + +R + + Sbjct: 63 -DFIKEARLVSNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRR 119 >gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 307 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD S GF V ATS A ++ + P+ +++D M G+ F Sbjct: 11 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDIILLDAVMPGMDGFD 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ V V ++ + E ++ AG +L KP N + LR +R Sbjct: 70 TCTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129 Query: 122 KSKDENQF-LDA 132 +S + LDA Sbjct: 130 RSAQSARVALDA 141 >gi|294495053|ref|YP_003541546.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] gi|292666052|gb|ADE35901.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] Length = 355 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + + D + A + +A E +E +P+ +++D M + Sbjct: 227 NILIVDDEPDIPDLLKLSLKDEPYDFLVAYNGKDAIEIA-REKIPDLILLDIMMPDMDGY 285 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ D+ + + + + + G G + ++ KPF++ + ++ + + Sbjct: 286 EVVETLKKERDTRDIAIIMITAKTKVDDKLKGMELGIDDYISKPFDKREVNARIKMVMKR 345 >gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 235 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + G+ V + + +A + E + L + ++D + + F Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNL-DLAILDVMLPDIDGFR 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L +V+ I G GA+ ++ KPFN + ++ + Sbjct: 64 ICQKIREQYYY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119 >gi|260576146|ref|ZP_05844139.1| response regulator receiver modulated serine phosphatase [Rhodobacter sp. SW2] gi|259021626|gb|EEW24929.1| response regulator receiver modulated serine phosphatase [Rhodobacter sp. SW2] Length = 422 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S RK+ L +G+ V EA S EA C +E + ++ D M G+ Sbjct: 21 RHVLVVDDSKAQRKILSMLLLRWGYRVTEAGSGEEALALC-QETSFDIILSDWMMPGMTG 79 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116 F R +P + L + + ++ G GA+ FL KP + + LR +R Sbjct: 80 VEFCRSFRGLPREGYGYFILLTSKSEKTEVADGLDGGADDFLTKPVSADELRARLRAGER 139 Query: 117 LPQMQ-KSKDENQF 129 + +MQ + +NQ Sbjct: 140 ILRMQCELVKKNQL 153 >gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1200 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ D ++ V A EA + ++ + +++D M + Sbjct: 1078 KTVLIADDDVRNIFSLSKSLENYKMNVLTALDGKEALQKLQENPSVDVVLLDMMMPQMDG 1137 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ P ++ V + + AGA+ ++ KP + + L +R Sbjct: 1138 YETAKRIRENPQWRNLPVIAVTAKAMTGDREKCINAGASDYITKPVDIDQLMSLLRVWL 1196 Score = 80.6 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 6/118 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L+V+ K G+ + E E P +++D + Sbjct: 809 KTILIVEDDTFFAKSLLDYTRKQGYKGIVSVRGDEGLELART-FKPMGILLDIQLPVLSG 867 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E + ++ P + V+ + + GA F+ KP E + R++ Sbjct: 868 WEVMDQLKNDPETRHIPVHIMSSH---RMKNESLQKGAIDFIDKPVAIEKMDEIFRKI 922 Score = 57.9 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 10/104 (9%), Positives = 36/104 (34%), Gaps = 3/104 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + + K + F + + E + + + +++D + Sbjct: 931 KKVLIVEDNSMHAKALAYFLGTFEIHSELKSDIHEGIQALSGNEV-DCVILDMGIPDKKA 989 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 + + ++ P + + + + A+S ++K Sbjct: 990 YDMLEEAKKNPGFEHIPIIIFTGKSLSMTEELRIKQYADSIIVK 1033 >gi|220909137|ref|YP_002484448.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865748|gb|ACL46087.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1954 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + V+ A + E + + E + +++D M + Sbjct: 1834 KKVLIVDDDMRNIFALTSILEQQQMQVYYAENGREGIQKLQSEPEIDIVLMDIMMPEMDG 1893 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ P + + + + AGA+ ++ KP E L +R Sbjct: 1894 YDTMRAIRQQPHFAQLPIVAITAKAMQGDREKCLAAGASDYIAKPIETEQLFSLLRVWL 1952 Score = 91.4 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ ++ +L GF A +K P+ +++D + G+ Sbjct: 1566 RSLLIIEDDPNFARILVNLARQQGFKALVALRGNTGLALAQK-YHPSAIMLDIFLPGLDG 1624 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++ P + V+ L + E+ + GA ++L KP E L A+ L Sbjct: 1625 WTVLDRLKHNPETRHIPVHILSIN---EERQRSLKQGAIAYLQKPIASEDLLNALSRL 1679 Score = 63.7 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 23/132 (17%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD+ + R L + +S A E E + + LV++ + + Sbjct: 1690 LLIVDADELQRLSLMDLLAGNDLEIETVSSGTAALERLESKH-FDCLVLNLVLPDMNGLA 1748 Query: 62 FIAHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +RQ + + + E+ +R + Sbjct: 1749 LIERLRQESQQQHLPIVIYTGQGLTVEEAAQ-------------------LNRLRNSLMI 1789 Query: 121 QKSKDENQFLDA 132 ++++ Q Sbjct: 1790 REARSPEQLFAE 1801 >gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 240 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 8/135 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A+ A + L P+ +++D + + Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAA-STLRPDLVIMDIMLPVMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + V V L D + G AGA+ ++ KPF+ L + L + Sbjct: 72 LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130 Query: 122 KSKD------ENQFL 130 EN+ L Sbjct: 131 DRAKVIAKNSENEKL 145 >gi|17231251|ref|NP_487799.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132893|dbj|BAB75458.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 396 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D +VR V + + G+ + E E L P ++ D M Sbjct: 1 MVKILVIDDDPVVRTVLKRTLENQGYETTVVNNGKEGIIQAEL-LRPALIICDWVMSPLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARAGANSFLLKPFNRETLRFAM 114 LE ++ P F L + + + + G AGA+ F+ KP L+ + Sbjct: 60 GLEVCRQIKANPELATSFFILLTAKGAAPGEEKDRVKGLDAGADEFISKPIEMIELKARV 119 Query: 115 RELPQMQKSKDENQ 128 R ++ + + Q Sbjct: 120 RAGLRLHQLNQDLQ 133 >gi|86147760|ref|ZP_01066067.1| putaive two-component response regulator [Vibrio sp. MED222] gi|85834398|gb|EAQ52549.1| putaive two-component response regulator [Vibrio sp. MED222] Length = 225 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + V F G + A + + E + +++D + + Sbjct: 1 MKRVLLVEDNREIAGVLFDYFECIGMELDYADNGELGLQLAL-ENSFDIIILDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + L + M+ G GA+ +L KPF+ + L M L + Sbjct: 60 GLTVCNKLRDQGNATPILMLTALDSRDDMLKGFEHGADDYLTKPFDLDILEARMNALVRR 119 Query: 121 QKSK 124 + K Sbjct: 120 YRGK 123 >gi|120554687|ref|YP_959038.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120324536|gb|ABM18851.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 782 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++LLV+ + + + V L G V A + A E + + +++D M + Sbjct: 656 NILLVEDNQVNQLVASSLLKKLGHRVDHAENGRRALEAL-QNKTYDLVLMDCQMPVMDGY 714 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +RQ P + V + V +G N ++ KP+NR+ LR + Sbjct: 715 EATRAIRQNPQWQTLPVIAVTANVMQGDREDCLASGMNDYITKPYNRDELRAVIAR 770 >gi|326404574|ref|YP_004284656.1| putative two-component response regulator [Acidiphilium multivorum AIU301] gi|325051436|dbj|BAJ81774.1| putative two-component response regulator [Acidiphilium multivorum AIU301] Length = 239 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R++ F V EA +V+D + G Sbjct: 4 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREA-RRAYLNGHYQLVVLDLMLPGES 62 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F +R + V + L + I G GA+ ++ KPFN L +R + Sbjct: 63 GIDFARWLR---GESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|298385504|ref|ZP_06995062.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14] gi|298261645|gb|EFI04511.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14] Length = 231 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + + GF + A+ E EL P+ LV D M + F Sbjct: 7 TVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFF-ELRPDVLVADVMMPKMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R V +L ++ G GAN +L KPF + L ++ L Sbjct: 66 EMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALM 121 >gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 230 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V AT+ EA + + P+ +++D + + Sbjct: 5 RILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQS-PDIILLDLGLPDMDG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ + + L + IA GA+ ++ KPF L +R + Sbjct: 63 KDVIRELRGWSKTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALRHAA 122 Query: 123 SKDENQ 128 + Q Sbjct: 123 QQASEQ 128 >gi|241766028|ref|ZP_04763947.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241363977|gb|EER59246.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 247 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 7/125 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+V+ + + + G+ E + P+ +++D + G E Sbjct: 23 ILVVEDEPKMAALLIDYLHAAGYRADRLADGRE-VAAFVRGRQPDLVLLDIMLPGRDGFE 81 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK-PFNRETLRFAMRELPQM 120 +R +DV + L D +AG GA+ ++ K PF+ + ++ + + Sbjct: 82 VCRELR---GFSDVPIIMLTARADEADRLAGLDLGADDYICKTPFSPREIVARVKAILRR 138 Query: 121 QKSKD 125 + D Sbjct: 139 SRRAD 143 >gi|238792322|ref|ZP_04635956.1| Response regulator receiver modulated diguanylate cyclase [Yersinia intermedia ATCC 29909] gi|238728248|gb|EEQ19768.1| Response regulator receiver modulated diguanylate cyclase [Yersinia intermedia ATCC 29909] Length = 309 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD I ++ F+ + V AT+ +A + C + P+ +++D M G+ F Sbjct: 12 KILIVDDHPINIQMLYQAFSS-DYHVCMATNGKQALDVCISQH-PDLILLDIEMPGMSGF 69 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ P D+ V ++ +D E GA F+ KP NR T+R ++ + Sbjct: 70 EVCARLKASPDTQDIPVIFVTAHIDEETETRCFSEGAVDFISKPINRNTVRARVKTHLLL 129 Query: 121 QKSKDENQFL 130 + D + L Sbjct: 130 KAQSDLLRQL 139 >gi|237716942|ref|ZP_04547423.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229442925|gb|EEO48716.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 616 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R + + + F +++ EA EA + E P+ ++ D M + Sbjct: 370 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 426 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I ++ + + + + + E I GA+++++KPF+ + + L Q Sbjct: 427 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 486 Query: 122 KSKD 125 Sbjct: 487 MLLK 490 >gi|298528195|ref|ZP_07015599.1| response regulator receiver sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511847|gb|EFI35749.1| response regulator receiver sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 366 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 8/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ +F D V A + A P+ +++D M G+ F Sbjct: 6 RILVVDDDANIVQLIADIFEDE-HEVLFALNGESA-GRIADTTRPDLVLMDVVMPGMDGF 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 A ++ + + +L + G + GA ++ KP N L+ +R Sbjct: 64 ETCARFKENQKTAHIPIIFLTSMDCPDDETRGLKLGAVDYITKPINPAVLKQRVRTHLDL 123 Query: 120 ---MQKSKDENQFL 130 Q+ +N+ L Sbjct: 124 YQARQRLAAQNKSL 137 >gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 226 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 1 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 59 GW-QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 Query: 121 Q 121 Sbjct: 118 H 118 >gi|167757089|ref|ZP_02429216.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402] gi|167703264|gb|EDS17843.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402] Length = 223 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 7/131 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L++D + ++ F G++V+ A EA + +LP+ +++D +M + Sbjct: 1 MYKILMIDDERDILEMLALQFQSEGYLVYLANDANEALKQL--SVLPDLILLDINMPEMN 58 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + + +L + MI G G + ++ KPF+ + L ++ Sbjct: 59 GLELCTMIREH---VNCPIIFLTARISSRDMINGLMLGGDDYITKPFSMDELFARVQAHL 115 Query: 119 QMQKSKDENQF 129 + +K Sbjct: 116 RREKRSSHKSR 126 >gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] Length = 224 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + ++ + V EA ++ E + +V+D M + Sbjct: 2 RILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPY-DAVVLDIMMPVLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G+ V L + E + G AGAN +L+KPF E L +R L + K Sbjct: 61 SVLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRKPK 120 Query: 123 SKDE 126 + Sbjct: 121 EAPQ 124 >gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 234 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|283836628|ref|ZP_06356369.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC 29220] gi|291067359|gb|EFE05468.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC 29220] Length = 243 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L+VD V + + + ++ F V S EA E + +++D + + Sbjct: 1 MKPTILVVDDDVAVCTLLQDVLSEHVFAVTACHSGQEALRCVETQPEIALVLLDMMLPDI 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + + + V L ++ G GA+ ++ KPFN L ++ + + Sbjct: 61 NGLMVLQQVQKMRPGLPVVMLTGLGSESDVVVGLEMGADDYIGKPFNARVLVARVKAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + GF V A E+ + +V+D + G+ Sbjct: 1 MSRILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGS-FDLMVLDIGLPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + V L + +AG GA+ ++ KPF E L +R ++ Sbjct: 60 GFTVLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVR--LRL 117 Query: 121 QKSKDEN 127 + + Sbjct: 118 VSDRSQE 124 >gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] Length = 223 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+++ ++ V L + G+ V A E EK+ + +++D M + Sbjct: 4 NILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQ-YFSLILLDIMMPKIDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L + E + A+ ++ KPF+ + + + + + Sbjct: 63 AVCEIIRKN---SDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRR 119 Query: 121 QKSKDEN 127 K K EN Sbjct: 120 TKEKVEN 126 >gi|163813849|ref|ZP_02205243.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759] gi|158450719|gb|EDP27714.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759] Length = 223 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 9/128 (7%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M LL+VD + + F+ + V A EA + ++ P+ +++D +M + Sbjct: 1 MKQRLLIVDDEPGIVDMMASYFSSQ-YEVLTAYCGNEALQKLARQ--PDLILLDINMPDI 57 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R++ + +L V+ I G +AGA+ +++KPF+ + L + Sbjct: 58 DGLTLCQKIREL---ITCPILFLTARVESADKIIGFQAGADDYIIKPFDLDELGARVAAH 114 Query: 118 PQMQKSKD 125 + ++ Sbjct: 115 LRREQRHR 122 >gi|163849959|ref|YP_001638002.1| response regulator receiver [Methylobacterium extorquens PA1] gi|163661564|gb|ABY28931.1| response regulator receiver [Methylobacterium extorquens PA1] Length = 247 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R + + G V A + + +V+D M G Sbjct: 7 VLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQ-MRAFLDADRVDLVVLDVMMPGDDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V L D I G GA+ +L+KPF L ++ + + Sbjct: 66 LCRELRS-GRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|89896561|ref|YP_520048.1| hypothetical protein DSY3815 [Desulfitobacterium hafniense Y51] gi|89336009|dbj|BAE85604.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 450 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD K+ ++V A + EA E + P+ +++D M + Sbjct: 156 RVLIVDDQLFNLKLLESAL-KEDYIVMTADNGIEALELATGKSQPDIILLDIIMPVMDGY 214 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+MP D+ V +L + + + G ++ KPF+ ++ +R + Sbjct: 215 EVCIRLREMPETRDIPVIFLSALKNEKNEEYALQLGVVDYITKPFSLPIIKGRLRNHVEQ 274 Query: 121 QKSKDENQ 128 +K +D + Sbjct: 275 KKYRDRQK 282 >gi|84388544|ref|ZP_00991091.1| putative two-component response regulator [Vibrio splendidus 12B01] gi|84377093|gb|EAP93964.1| putative two-component response regulator [Vibrio splendidus 12B01] Length = 225 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + V F G + A + + E + +++D + + Sbjct: 1 MKRVLLVEDNREIAGVLFDYFECIGMELDYADNGELGLQLAL-ENSFDIIILDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + L + M+ G GA+ +L KPF+ + L M L + Sbjct: 60 GLTVCNKLRDQGNATPILMLTALDSRDDMLKGFEHGADDYLTKPFDLDILEARMNALVRR 119 Query: 121 QKSK 124 + K Sbjct: 120 YRGK 123 >gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 223 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ V + + + V E + + + ++D + Sbjct: 1 MK-ILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEY-SLAILDVMVPKKD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G+ + V L + +++G AGA+ +L KPF L +R L + Sbjct: 59 GLTVIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRR 118 Query: 121 QK 122 + Sbjct: 119 SE 120 >gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] Length = 234 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 8/131 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + GF+V A A + + P+ +V+D + G+ Sbjct: 5 TILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALA-RSVKPDLVVLDVMLPGLDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQ+ T VFV L D + G GA+ +L KPF+ L ++ + + Sbjct: 64 EVC-RQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR-- 120 Query: 123 SKDENQFLDAI 133 N+ + AI Sbjct: 121 ----NRVIRAI 127 >gi|325300034|ref|YP_004259951.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] gi|324319587|gb|ADY37478.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] Length = 228 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V A S EA + N L++D M + F Sbjct: 5 RILVVDDEDDLCEILKFNLEMEGYKVDTANSAEEALKL--DLTQYNLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + ++ + I G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMARMLKANKDTVNIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 122 Query: 121 QKSKDENQ 128 + + Sbjct: 123 TANLQRKE 130 >gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ + GF V T R+ +E + ++D + G+ Sbjct: 1 MSRILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEED-FDMFILDLMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFAICKQIREK---KNTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+ D +R++ G+ VFEA EA + + +ID M Sbjct: 1 MAAILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNIL-SQRTVHLCIIDVMMPNKN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ D+ + + + + E + G + G + +++KPF+ L ++ L Sbjct: 60 GWELCKEIREL---YDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALL 116 Query: 119 QMQKSKDENQ 128 + K N+ Sbjct: 117 RRYKINTTNK 126 >gi|297565188|ref|YP_003684160.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849637|gb|ADH62652.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 223 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ + ++ G+ A A E P+ +++D + + Sbjct: 3 TSILIVEDEIRLAEILEDYLRREGYKTERAKDGGRALELWRVA-QPDLILLDLMLPVLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R +DV + L D + G GA+ +++KP++ + ++ + + Sbjct: 62 LEVARRIRAE-SDVPIIMLTARDDEVDKLVGLGLGADDYVVKPYSPREVVARVKAVLRRV 120 Query: 122 K 122 + Sbjct: 121 R 121 >gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 230 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + ++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|111221291|ref|YP_712085.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111148823|emb|CAJ60501.1| Putative Transcriptional regulatory protein [Frankia alni ACN14a] Length = 250 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 5/110 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ G+ V A +A + ++ P+ +V+D M + Sbjct: 9 RVLVVDDDAAVRESLERSLRFEGYEVTTAVDGADALDAVCRD-QPDIVVLDVMMPRIDGL 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 +R G DV V L ++G GA+ +L+KPF E L Sbjct: 68 ETCRQLRAR--GDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 115 >gi|163848363|ref|YP_001636407.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222526285|ref|YP_002570756.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|163669652|gb|ABY36018.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222450164|gb|ACM54430.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 527 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD +R + D GF+V A A E + +++D + Sbjct: 221 RILLVDDELDIRVILSQQLTDAGFVVVTAPDATTAL-RLMHEQFFDLVILDRLLPDSDGL 279 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L ++ + + GA+ +++KP + L +R + + Sbjct: 280 NVLRTIRSSGTTRLIPVMLLSAVSSLDEKVRSLQLGADDYVVKPCSAAELAARIRSILRR 339 Query: 121 QKSKD 125 + + Sbjct: 340 SERES 344 >gi|300869425|ref|ZP_07114010.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300332555|emb|CBN59208.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 358 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 5/134 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M+ +L++D V L +D + + A S EA + P+ +++D M Sbjct: 1 MNKPSILIIDDEPDNFDVIETLLSDPDYQLHYAASGQEAIASLDT-FNPDLILLDVMMPE 59 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E ++ M V + + + AGA+ F+ KP N LR + Sbjct: 60 TDGIEVCRQIKAMSKWQAVPIVMVTALSSKSDLAYCLTAGADDFITKPVNAIELRARVHS 119 Query: 117 LPQMQKSKDENQFL 130 + +++ D+ Q L Sbjct: 120 MLRIKHHYDDLQTL 133 >gi|237736000|ref|ZP_04566481.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421908|gb|EEO36955.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 243 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L++D + ++ + G+ + + + E EK P+ +++D + Sbjct: 3 KKILVIDDEEHILELLKINLEFSGYDTYAYDTGKDVLEIIEKTN-PDLILLDLMLPEIDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R+ P + + L + D I GA+ ++ KPF+ L ++ + + Sbjct: 62 IEICKRIRRNPKFNKIKLLILSAKSDEIDKILCLEIGADDYITKPFSLRELLARIKAIFR 121 Query: 120 M 120 Sbjct: 122 R 122 >gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 239 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +RK+ + G+ V +A E E+ + + +V+D M V Sbjct: 11 TILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEV-HLVVLDIMMPKVDGI 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 70 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 126 >gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 1316 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 9/123 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + ++V + + G V A + A E E + +++D M G+ Sbjct: 1088 VLVVEDNLLNQEVAQEILEQAGMAVTLADTGERALELA-AEHAFDVVLMDIQMPGMDGLQ 1146 Query: 63 -IAHVRQMPL------GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +R+M ++ V + AG + F+ KPF + L ++ Sbjct: 1147 TTQELRRMADKTGKHFLQNLPVIAMTGHAMKSDQNRCLAAGMDDFIAKPFRIDQLFATLQ 1206 Query: 116 ELP 118 Sbjct: 1207 RWL 1209 >gi|325122777|gb|ADY82300.1| two component heavy metal response transcriptional regulator, winged helix family [Acinetobacter calcoaceticus PHEA-2] Length = 223 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ + E +++ + L++D + + Sbjct: 2 RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + V +L + + G GA+ +L KPF+ L ++ L + Sbjct: 61 SVLQVLRQ---FSRIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117 Query: 121 QKSKDENQF 129 Q+ EN+ Sbjct: 118 QQYLQENEL 126 >gi|294507174|ref|YP_003571232.1| phosphate regulon transcriptional regulatory protein phoB [Salinibacter ruber M8] gi|294343502|emb|CBH24280.1| Phosphate regulon transcriptional regulatory protein phoB [Salinibacter ruber M8] Length = 253 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 45/121 (37%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+ + + F G+ V A +A + + +++D + F Sbjct: 14 RLLIAEDDPDLGSSLESFFAQHGYEVHHAMEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G D V L ++ + E + G GA+ ++ KPF+ + L + + + Sbjct: 74 EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKVLAARVEAVLSRSQ 133 Query: 123 S 123 S Sbjct: 134 S 134 >gi|254787196|ref|YP_003074625.1| BaeR family transcriptional regulator [Teredinibacter turnerae T7901] gi|237684514|gb|ACR11778.1| transcriptional regulatory protein BaeR [Teredinibacter turnerae T7901] Length = 232 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+V+ + + R GF + E E + +++D + G L Sbjct: 4 TVLIVEDEAELALLMRDYLLAAGFHCEIIGNGLE-VERWLSTNTADIILLDLMLPGKNGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + + + +V+ + G GA+ ++ KPF+ + ++ + + Sbjct: 63 DICRELRTQAQFKTLPIIMVTAKVEEIDRLLGLELGADDYVCKPFSPREIVARVKAVLRR 122 Query: 121 QKSKDEN 127 + E Sbjct: 123 VQQPQEQ 129 >gi|187932341|ref|YP_001885950.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187720494|gb|ACD21715.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 235 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+V+ + N+ G+ VF+A + E + + E + ++D M Sbjct: 1 MKLYNVLIVEDEKEICDAIAIYLNNQGYNVFKAHNGIEGLDVIKNET-IHLAIVDIMMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ D V L + + I G GA+ ++ KPFN L + Sbjct: 60 MDGIQMTMKLRGEF-DFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + GF +A E P+ +++D + G+ Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAF-HEAKPDLVLLDLMLPGLDGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + D ++ G +GA+ +++KPFN + L +R + Sbjct: 63 QVCDLIRAESG---IPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLR 118 >gi|187736215|ref|YP_001878327.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] gi|187426267|gb|ACD05546.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] Length = 234 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ + +R + G+ V A +E + ++D +M G F Sbjct: 7 TILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAV-RERNFDLALLDVAMPGADGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V L + E + G + GA+ +++KPF+ L + + + Sbjct: 66 QVLQVMSEERPGTPVIMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVLRRSP 125 Query: 123 SKDENQF 129 + Sbjct: 126 ERPRQLR 132 >gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 229 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 + +V+ + + ++ G+ V EA E +E +P+ L++D + G + Sbjct: 6 RITVVEDEEALSVLLQYNLEAEGYEVDAVLRGDEA-EIHLQERVPDLLILDWMLPGISGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R P + + L + + + G GA+ +++KPF+ L +R + + Sbjct: 65 ELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAMLRR 124 >gi|71907245|ref|YP_284832.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71846866|gb|AAZ46362.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 873 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ I ++V L + G V A +A + + + +++D M + Sbjct: 752 RRVLLVEDEPINQEVAGELLREVGLEVELAADGLQAVQLVVENDY-DVILMDMQMPEMDG 810 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++P V + + E +G N F+ KP N + L + Sbjct: 811 LEATRAIRKLPGRQTVPILAMTANAFAEDRERCMASGMNDFIPKPVNPDVLYATLLRWL 869 >gi|71737704|ref|YP_273433.1| sensory box protein/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558257|gb|AAZ37468.1| sensory box protein/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 705 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S E + P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L + ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ ++ ++ R GF A + + F + +++D + Sbjct: 1 MRKILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFAL-NREFDLILLDLMLPSKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R ++ + + + D I G GA+ +++KPF+ L + Sbjct: 60 GFQLCKEIRSN---KEIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHL 116 Query: 119 QM 120 Sbjct: 117 SR 118 >gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 235 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + ++ + G+ V A + EA E + + ++D +M + F Sbjct: 4 TILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELL-QHRTIDLAILDINMPLMDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + V + I G GA+ F+ KPFN + ++ + Sbjct: 63 -ALLKHIRTIHTFPVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQLRR 119 >gi|295116020|emb|CBL36867.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 208 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L + +R+V GF V EA ++ + + +++D M G+ Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDY-DVVILDIMMPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V L + G AGA+ +L KPF L +R L + Sbjct: 61 TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118 >gi|224477348|ref|YP_002634954.1| hypothetical protein Sca_1863 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421955|emb|CAL28769.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 224 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + L+VD + + GF ++ +A ++ +K+ + + +ID M G+ Sbjct: 1 MTTCLIVDDDYQILHYVSSYLEKEGFKTVTYSNAEDALKYLDKQHV-DIAIIDIMMNGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ + V L G + ++ KPF + L F ++ + Sbjct: 60 GFELCQEIK---DNYTLPVIMLTARDALSDKEEAYLTGTDDYVTKPFEVQELIFRIKAVL 116 Query: 119 QMQKSKDENQF 129 + + EN+ Sbjct: 117 RRYQINAENEL 127 >gi|160945860|ref|ZP_02093086.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii M21/2] gi|158443591|gb|EDP20596.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii M21/2] Length = 224 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 7/121 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + + + F GF V A + EA + EK+ P+ +++D +M G L Sbjct: 4 KILIADDESDIVSMLGNFFESKGFRVLPAFNGAEALKQVEKQ--PDIILLDINMPGTDGL 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + +L ++ + G G + +++KPF+ L +R + Sbjct: 62 EVCKRIR---DHISCPILFLTARIEDTDKVKGFAVGGDDYIVKPFSLVELDARVRAHLRR 118 Query: 121 Q 121 + Sbjct: 119 E 119 >gi|24251269|gb|AAN46189.1| unknown protein [Synechococcus elongatus PCC 7942] Length = 411 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+ + + I R V G V S EA ++ + L +D M G Sbjct: 174 RLLVAEDNEINRDVLERRLRRLGHDVVCVASGQEALNQLAQQP-FDLLFLDVMMPGLTGF 232 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + ++ P ++ V + D E +I R GA +L KPF L+ + Q Sbjct: 233 EVLQQLKADPTLAELPVLMISALDDLESVIRCLRLGATDYLTKPFEPTLLQTRLETCLQH 292 Query: 121 QKSKDEN 127 ++ +D Sbjct: 293 KRLRDRE 299 >gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L] gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L] gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 233 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKIREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|328885443|emb|CCA58682.1| Two-component hybrid sensor and regulator [Streptomyces venezuelae ATCC 10712] Length = 1785 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1665 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTIVLMDIMMPEMDGY 1724 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M E + Sbjct: 1725 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEEWMR 1783 >gi|320105204|ref|YP_004180795.1| CheA signal transduction histidine kinase [Isosphaera pallida ATCC 43644] gi|319752486|gb|ADV64246.1| CheA signal transduction histidine kinase [Isosphaera pallida ATCC 43644] Length = 1625 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61 ++L+VD S VR+ +L D G+ A +A E ++ +P+ +++D M + Sbjct: 1499 TILVVDDSPTVRRTVSNLIKDQGWTPILAKDGLDAIETLQRSPVIPDLVLLDIEMPRMDG 1558 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++R P ++ + + + GA +++KP++ E + +R L Sbjct: 1559 YEVLGNLRAQPSFRNLPIVMVTSRAGQKHRRKAMDLGATDYVIKPYDDEEMLARIRRLVG 1618 Query: 120 MQKS 123 +++ Sbjct: 1619 NRRA 1622 >gi|312622039|ref|YP_004023652.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202506|gb|ADQ45833.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 234 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++ +VD + ++ G+ V + + EK P+ +++D + Sbjct: 5 TVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSE-PDIVILDIMLPDIDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + L + + + G G++ ++ KPF+ L ++++ + Sbjct: 64 EICKRIRKNSE---VPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRR 120 >gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 223 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ + E +++ + L++D + + Sbjct: 2 RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + V +L + + G GA+ +L KPF+ L ++ L + Sbjct: 61 SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117 Query: 121 QKSKDENQF 129 Q+ EN+ Sbjct: 118 QQYLQENEL 126 >gi|295677877|ref|YP_003606401.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437720|gb|ADG16890.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 246 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +VR + GF + E+E P+ +V+D M Sbjct: 5 VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V ++ I G GA+ +L KPF+ L ++ + + + Sbjct: 64 ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLVRIQTVLRRR 121 >gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 238 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 7/128 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + G+ + A ++ P+ +++D + G L Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAF-QQTRPDIVLLDLMLPGRNGL 75 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V + L + D ++ G AGA+ ++ KPF L +R + Sbjct: 76 QICQDIRTQ---STVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR 132 Query: 121 QKS-KDEN 127 ++ + EN Sbjct: 133 GETGQAEN 140 >gi|298530357|ref|ZP_07017759.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509731|gb|EFI33635.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] Length = 388 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++D KV + + G+ V S A + +K P+ +++D M + Sbjct: 7 KTLMIIDDYPENLKVLQEMLEVSGYRVVAFPSGPLALKAADKNP-PDLILLDIKMPEMDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ ++ V ++ + I G ++ KPF+ E + + Sbjct: 66 FEVCRRLKAHDKLKEIPVIFISALDQVQDKIRAFSQGGADYITKPFHPEEVHARVTSHLA 125 Query: 120 MQKSKD 125 + +D Sbjct: 126 SKSLQD 131 >gi|298490636|ref|YP_003720813.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] gi|298232554|gb|ADI63690.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] Length = 317 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + ++ + ++ G+ A++ +A + + P+ +++D M + Sbjct: 11 ILVVDDVKLNLQIVAKILDNVGYECSFASNGYQALKRV-RSARPDLILLDLMMPEMDGLE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P +++ + ++ + E ++ + GA ++ KPF+ L +R +++ Sbjct: 70 VCEKIQANPELSEIPIIFISASQEQEHLLQAFQKGAVDYVAKPFHSAELLARVRMHLELK 129 Query: 122 KSKDENQFL 130 S+ + + L Sbjct: 130 YSRQKLKNL 138 >gi|223940723|ref|ZP_03632561.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223890614|gb|EEF57137.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 231 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 2/129 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L++D +R++ R G+ VFEA + + P +++D + + Sbjct: 10 VLVIDDEVQIRRLLRVSLEANGYRVFEAANGQTGLVEA-AQRRPEVVLLDLGLPDMDGVT 68 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 ++++ + V V L + + +A GA+ +L KPF L +R + +S Sbjct: 69 V-LKRLREWSQVPVVILSVRDREDDKVAALDHGADDYLTKPFGTAELLARLRVALRHSQS 127 Query: 124 KDENQFLDA 132 ++ + Sbjct: 128 APDDALFKS 136 >gi|29653715|ref|NP_819407.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 493] gi|153207221|ref|ZP_01945985.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii 'MSU Goat Q177'] gi|154705969|ref|YP_001425049.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii Dugway 5J108-111] gi|161830581|ref|YP_001596307.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 331] gi|165918696|ref|ZP_02218782.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 334] gi|212213134|ref|YP_002304070.1| PhoB [Coxiella burnetii CbuG_Q212] gi|212218191|ref|YP_002304978.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii CbuK_Q154] gi|29540978|gb|AAO89921.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii RSA 493] gi|120576709|gb|EAX33333.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii 'MSU Goat Q177'] gi|154355255|gb|ABS76717.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii Dugway 5J108-111] gi|161762448|gb|ABX78090.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 331] gi|165917631|gb|EDR36235.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 334] gi|212011544|gb|ACJ18925.1| PhoB [Coxiella burnetii CbuG_Q212] gi|212012453|gb|ACJ19833.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii CbuK_Q154] Length = 248 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 63/131 (48%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+++ +R + R D F + +A +A + + +P+ +++D + G + Sbjct: 20 KLLIIEDEIAIRDMVRFSLPDE-FELLDAEDTAKAIKQLAAQ-IPDLILLDWMLPGKSGI 77 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EFI ++Q + D+ + L + + E + G +GA+ ++ KPF+ + L +R + + Sbjct: 78 EFIEWIKQKEIWQDIPIVLLTAKAEEENKVRGLMSGADDYITKPFSPDELIARIRAILRR 137 Query: 121 QKSKDENQFLD 131 NQ + Sbjct: 138 GPLISSNQEIK 148 >gi|78046340|ref|YP_362515.1| OmpR family two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034770|emb|CAJ22415.1| two-component system regulatory protein, OmpR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 259 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 28 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 86 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + ++ Sbjct: 87 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146 Query: 124 KDEN 127 +E Sbjct: 147 SNEQ 150 >gi|169829139|ref|YP_001699297.1| KDP operon transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168993627|gb|ACA41167.1| KDP operon transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 234 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + A A + + P+ ++D + + Sbjct: 3 KRILVVEDDVAIANLIKMTLATQHYEFDIAQDGNSALQKAIT-MKPDVYILDLGLPDIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ T + + + I AGA+ ++ KPF+ E L +R + Sbjct: 62 V-ELITKIRSWTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRR 119 >gi|119471376|ref|ZP_01613848.1| chemotaxis response regulator [Alteromonadales bacterium TW-7] gi|119445652|gb|EAW26936.1| chemotaxis response regulator [Alteromonadales bacterium TW-7] Length = 120 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ GF V EA EA +++ + ++ D +M + Sbjct: 1 MKKILAVDDSASMRQMVSFTLKTAGFDVTEAKDGSEALAIAKQQG-FDAVISDVNMPIMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R +P + L E EK + G AGA +++KPFN E L ++++ Sbjct: 60 GITLIRELRTLPDYKFTPLLMLTTESGLEKKVEGKAAGATGWIVKPFNPEQLLAVIKKVI 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|311280422|ref|YP_003942653.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749617|gb|ADO49369.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 225 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R++ R G V EA ++ P+ +++D + Sbjct: 1 MINVLIIEDEQAIRRLLRSALEGDGLRVHEAETLQRGL-LEAATRKPDLVILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + V + L + I AGA+ +L KPF L+ +R + Sbjct: 60 G-IDFIRDFRQWSQVPIIVLSARAEETDKITALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKDENQFL 130 ++NQ L Sbjct: 119 YGGSEQNQPL 128 >gi|317048083|ref|YP_004115731.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316949700|gb|ADU69175.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 246 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +R++ G+ A + E + +V+D M G L Sbjct: 7 ILVVDDDRDIRELITDYLMKSGYRATGAANGRE-MRAVLAANAVDLVVLDIMMPGDDGLT 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P ++ + L + I G GA+ +L+KPF L ++ + + Sbjct: 66 LCRQLRSDPQ-RNLPILMLTARSEDSDRILGLEMGADDYLIKPFVARELLARIKAILRRT 124 Query: 122 KSKDEN 127 ++ N Sbjct: 125 RALPPN 130 >gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 11/135 (8%) Query: 1 MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M S+LLV+ +++ + G+ V + A + K + +++D Sbjct: 1 MKEATKASILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAV-KNEYFDLIILDIM 59 Query: 56 MEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + + ++R +V + +L + + G + G + ++ KPFN E L Sbjct: 60 LPEMDGIAVCENIRIQ--NNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLR 117 Query: 114 MRELP-QMQKSKDEN 127 + +L + ++ +D++ Sbjct: 118 VEKLIVKNKRIQDKD 132 >gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 226 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATY-DLIVLDIMIPGINGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 226 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 229 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K G+ + + + +++D + + Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDY-DVILLDLMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + ++G GA+ +L+KPF E L +R L + Sbjct: 60 GLEVARRLREV-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118 Query: 121 QKSKDE 126 + E Sbjct: 119 ITIETE 124 >gi|160880215|ref|YP_001559183.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428881|gb|ABX42444.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 223 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 8/123 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC-EAREFCEKELLPNYLVIDESMEGV 59 M+ +LLV+ + G++V A + +A K+ + + +++D S++ Sbjct: 1 MNRILLVEDDPFIVNNLTEFLQSEGYIV-SAVNGQKDAL-MLLKQEVYDIILLDISLKDG 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++ M D V ++ D ++AG GA+ ++ KPF L ++ + Sbjct: 59 NGFAVCKAIKSMG---DTPVIFVTASGDEFSVVAGLDMGADDYISKPFRPRELLSRIKSV 115 Query: 118 PQM 120 + Sbjct: 116 LRR 118 >gi|83646967|ref|YP_435402.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396] gi|83635010|gb|ABC30977.1| FOG: EAL domain [Hahella chejuensis KCTC 2396] Length = 569 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+VD ++ +F G V E + C + P+ +++D M G Sbjct: 8 RLLIVDDEQRNTRLLADIFRAEGCDVHELNNSCNTLKTV-ANYEPDLIILDVMMPGKNGF 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + L D + ++G AGA ++ KPFNR L + L ++ Sbjct: 67 ELTREIKSHEAWKHIPIILLTALADRDSCVSGLEAGAEDYVSKPFNRRELCARVNNLLKL 126 Query: 121 QKSKD-ENQFL 130 +K D +NQ + Sbjct: 127 KKLHDFQNQNI 137 >gi|332533257|ref|ZP_08409124.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Pseudoalteromonas haloplanktis ANT/505] gi|332037336|gb|EGI73791.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Pseudoalteromonas haloplanktis ANT/505] Length = 120 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ GF V EA EA +++ + ++ D +M + Sbjct: 1 MKRILAVDDSASMRQMVSFTLKTAGFDVTEAKDGSEALAIAKQQD-FDAVISDVNMPIMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R +P + L E EK + G AGA +++KPFN + L ++++ Sbjct: 60 GITLIRELRTLPSYKFTPLLMLTTESGLEKKVEGKAAGATGWIVKPFNPDQLLAVIKKVI 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|308186053|ref|YP_003930184.1| Alkaline phosphatase synthesis transcriptional regulatory protein sphR [Pantoea vagans C9-1] gi|308056563|gb|ADO08735.1| Alkaline phosphatase synthesis transcriptional regulatory protein sphR [Pantoea vagans C9-1] Length = 224 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 2/131 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R + VF+A ++ P+ +++D + Sbjct: 1 MTTVLIVEDEKEIRRFVRLALENEDLKVFDADTLQRGL-IEAATRKPDLVILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + V L D + IA AGA+ +L KPF L +R + Sbjct: 60 G-TDFIRDLRQWSAIPVIVLSARSDEQDKIAALDAGADDYLTKPFGVGELLARVRVALRR 118 Query: 121 QKSKDENQFLD 131 + + Sbjct: 119 HGGQQPEARIQ 129 >gi|300855893|ref|YP_003780877.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300436008|gb|ADK15775.1| predicted response regulator [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + K L GF V A + +A + +ID S+ Sbjct: 1 MKQIFLVEDDKEIAKNLVLLLRSEGFTVTHAPTRSDALAML-AGNKFDLALIDISLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++++ DV V +L D ++ G GA+ ++ KPF L +R Sbjct: 60 GFTVCTEIKEI---QDVPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRTAL 116 Query: 119 QM 120 + Sbjct: 117 RK 118 >gi|294647906|ref|ZP_06725458.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806302|ref|ZP_06765149.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292636814|gb|EFF55280.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294446558|gb|EFG15178.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295085623|emb|CBK67146.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1321 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + + + V AT+ EA + + N ++ D M + F Sbjct: 1073 VLVVEDNPDMLTFVVRQLSR-DYTVLTATNGAEALQVLDGN-YVNLVISDVVMPVMDGFE 1130 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L + + + I G GA++++ KPF+ E L+ L Q + Sbjct: 1131 LCKTIKSDLNYSHIPVILLTAKTNIQSKIEGMELGADAYIEKPFSVEYLQACASNLIQNR 1190 Query: 122 KSKDE 126 + + Sbjct: 1191 EKLRQ 1195 >gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 222 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+V+ + G+ V E E + +++D + G+ Sbjct: 2 RLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRA-SEGAYDLVILDIMLPGMNGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R G DV + L + G GA+ +L KPF+ L ++ L + Sbjct: 61 RVCAALRA--AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118 Query: 121 QKS 123 + + Sbjct: 119 RHA 121 >gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 231 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD + ++ + GF V A + EKE + + V+D + + F Sbjct: 4 KIIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETV-DVAVLDVMLPDIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++Q+ V L + + I G GA+ ++ KPFN + ++ + + Sbjct: 63 -QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQ 121 Query: 123 SKDE 126 ++ Sbjct: 122 RYNQ 125 >gi|237717182|ref|ZP_04547663.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405950|ref|ZP_06082500.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229443165|gb|EEO48956.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356825|gb|EEZ05915.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1342 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + + + V AT+ EA + + N ++ D M + F Sbjct: 1094 VLVVEDNPDMLTFVVRQLSR-DYTVLTATNGAEALQVLDGN-YVNLVISDVVMPVMDGFE 1151 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + V L + + + I G GA++++ KPF+ E L+ L Q + Sbjct: 1152 LCKTIKSDLNYSHIPVILLTAKTNIQSKIEGMELGADAYIEKPFSVEYLQACASNLIQNR 1211 Query: 122 KSKDE 126 + + Sbjct: 1212 EKLRQ 1216 >gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 234 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ F V+ A S EA +E+ P+ ++D M G+ F Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIA-REVNPDAYILDVMMPGMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D V YL + ++ I G GA+ ++ KPF+ E + +R + + Sbjct: 67 ELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGG 126 Query: 123 SKDE 126 + +E Sbjct: 127 AAEE 130 >gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] Length = 278 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V A + +A E + V+D + V F Sbjct: 46 RILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADA-ARLILEREFDLAVLDIMLPDVDGF 104 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V L I G GA+ +++KPF L + + Sbjct: 105 -ELLRTIRTERTYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRR 161 >gi|170077968|ref|YP_001734606.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885637|gb|ACA99350.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 372 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD S + + + D + + +A E ++ + +++D M + F Sbjct: 9 RVLVVDDSPDNLLLIQSILEDEDLDLVTVNNGQKALELVAQQP-FHLILLDVMMPHMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H+R P + + + + G GA+ F+ KP + L +R L + Sbjct: 68 EITRHIRNDPDIPYIPILLITAHAQPS-VALGLDIGADDFIRKPVEIDELIARVRSLLRF 126 Query: 121 QKSKDENQFL 130 + + DE + Sbjct: 127 KHTVDEKNMI 136 >gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces ambofaciens ATCC 23877] Length = 1331 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + E +++D M + Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIETLIDHPEVALVLMDVMMPEMDG 1270 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R++P ++ + + + +GA+ ++ KP + + L +R Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329 Score = 36.3 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 11/78 (14%) Query: 48 NYLVIDESMEGVLE---FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA----GANSF 100 + +V++ M E F+ +R V V + R+ GA F Sbjct: 1106 HCVVLELGMRD-DEASRFLRALRGDSALASVPVLVHSGHRADAALEESLRSGTQDGALEF 1164 Query: 101 LLKPFNRETLRFAMRELP 118 L + + LR + Sbjct: 1165 LS---SLDELRERIALHL 1179 >gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1] gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1] Length = 226 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ ++ + L F V + + K+ + +++D + + Sbjct: 1 MTKILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQS-FDLVLLDLGLPMMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q+ T V V + E + G GA+ +L+KP+ + L + L + Sbjct: 60 GM-QVLKQIRQKTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRR 118 Query: 121 QKSKD 125 SKD Sbjct: 119 TNSKD 123 >gi|85712473|ref|ZP_01043522.1| Response regulator of sigma subunit, serine phosphatase (CheY-RsbU) [Idiomarina baltica OS145] gi|85693751|gb|EAQ31700.1| Response regulator of sigma subunit, serine phosphatase (CheY-RsbU) [Idiomarina baltica OS145] Length = 560 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 8/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + L FG V A++ EA E ++ P +++D M + Sbjct: 1 MK-ILVVDDQKANQIMLTGLLTSFGHEVVCASNGREALGLFE-QVQPQLILLDVMMPEMD 58 Query: 61 EFIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ M + + +L + ++ + G + FL PF L+ + Sbjct: 59 GFETAPRLKAMSGNVHLPIIFLTALDSQDTLLECLKVGGDDFLSIPFEPVVLQAKVNAHA 118 Query: 119 QMQKSK----DENQFLD 131 ++++ ++N+ L Sbjct: 119 RVRELSYSIVEKNRALA 135 >gi|113970242|ref|YP_734035.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|113884926|gb|ABI38978.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] Length = 226 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 4/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + R G V A + E + + +P+ +++D M + Sbjct: 1 MSRILLVDDDPLFRVWLTDALKTQGHEVECAINGIEGLKRI-RSFMPDIIMLDLIMPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + L + E I GA+ FL KPF+ + L + L + Sbjct: 60 GFSLL---EARDCMTPIMMLSARDNEEDRIRCYELGADDFLTKPFSIKELLVRLHALERR 116 Query: 121 QKSKDENQF 129 S+ Q Sbjct: 117 LISRPPEQM 125 >gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1166 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + I +++ L G V A S A + E + +++D M + Sbjct: 829 RVLLVEDNAINQEIAIELLGYAGVAVTPAASGQSALDLLNSEAPFDLVLMDIQMSDMDGY 888 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ P + V + + G + KP E L A+ + + Sbjct: 889 ATTRQLRQDPRFKTLPVVAMTAHAMVSDREKALQLGMQDHIPKPIEPEQLFAALVQWIKP 948 Query: 121 QKSKDE 126 +++ + Sbjct: 949 RQANQQ 954 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 3/115 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + R++ N F V S A + E P +++D+ M G+ Sbjct: 681 RVLVVDDNATAREILEEQLNAFHMEVCSVASGEAALDVLHHEPRPELILLDDQMTGLSGV 740 Query: 63 I--AHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +R + V L + G F+ KP + L + Sbjct: 741 ETVRRLRGQINLARIPEVLMLSDHGREKVRQEAEALGITHFMCKPISPSVLLETL 795 >gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 241 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D + + G+ V A + +++ +++D + + Sbjct: 7 MRERILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAV-LVILDVMLPEM 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F A + ++ + V L + + G + GA+ +L KPF+ + L + Sbjct: 66 SGF-AVLSELRKTKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIR 124 Query: 120 M 120 Sbjct: 125 R 125 >gi|320109408|ref|YP_004184998.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319927929|gb|ADV85004.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 234 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD + ++ R G+ V A+ E E + + P+ +V D +M + Sbjct: 3 KRILVVDDERQITRMLRTSLQSSGYDVSIASDGLEGFERFKAD-QPDLIVTDLAMPEMNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+M + L + I GA+ +L KPF+ L +R + Sbjct: 62 LELTQAVRRMAT---TPIIVLSVRDTDTMKITALDEGADDYLTKPFSMPELLARIRVQLR 118 Query: 120 MQKSKDENQ 128 ++ + + Sbjct: 119 RIEAAEPGE 127 >gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 238 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD ++ ++ G A + P+ +V+D + G+ Sbjct: 11 SVLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRA-TAPDVVVLDLGLPGMDGV 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQ+ +D +V L D + G GA+ ++ KPF+ L ++ L + + Sbjct: 70 EVC-RQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPR 128 Query: 123 S 123 + Sbjct: 129 A 129 >gi|300710684|ref|YP_003736498.1| response regulator receiver protein [Halalkalicoccus jeotgali B3] gi|299124367|gb|ADJ14706.1| response regulator receiver protein [Halalkalicoccus jeotgali B3] Length = 122 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEG 58 M++ + +VD +R++ G+ V + + + P+ L++D M Sbjct: 1 MNTDVFVVDDEPELRELVSFHLETAGYDVATYPDGEACWQQLQGTDSPPDVLLVDVMMPN 60 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F + VR +++ V L ++ G GA +L KPF + L + Sbjct: 61 MNGFQLLKAVRDGEGLSELPVIMLTARGTETDVVQGFDIGATDYLTKPFRSQELLARIGR 120 Query: 117 LP 118 Sbjct: 121 YV 122 >gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 227 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + + L GF AT A K + +++D + G+ Sbjct: 1 MATVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKND-IDLVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCRRLRQV---STVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] Length = 229 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + V + V + + EA ++ + + ++D + + F Sbjct: 2 NILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYI-GSMKIDLAILDIMLPDIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q+ V L + ++ I G GA+ ++ KPFN L ++ + Sbjct: 61 -QILKQIRGKYTFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRR 117 >gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 222 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +RK+ R FN F V EA +A + KE + +++D + + Sbjct: 1 MK-ILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVF-KENSVDIVILDIMIPYLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ V + L + + E + G GA+ ++ KPF+ + L ++ L Sbjct: 59 GWTVCKSIRQNSK---VPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALL 115 Query: 119 QM 120 + Sbjct: 116 KR 117 >gi|167763747|ref|ZP_02435874.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC 43183] gi|167697863|gb|EDS14442.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC 43183] Length = 227 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + ++ + + G V AT+V E E + ++ D + Sbjct: 1 MAKILVIEDENRMAELLKRGLEESGHTVGTATNVSEGLRMFAYEKQ-DIIISDIMLPDGS 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ V + L + + G +GA+ +++KPF+ L + L Sbjct: 60 GFDLCRDIRRQNET--VPILILTALGTTDDKLEGFDSGADDYMVKPFDFRELNARISILL 117 Query: 119 QM 120 + Sbjct: 118 KR 119 >gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 226 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 1 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 59 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 Query: 121 Q 121 Sbjct: 118 H 118 >gi|160936708|ref|ZP_02084075.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC BAA-613] gi|158440499|gb|EDP18244.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC BAA-613] Length = 231 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 9/138 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M+ +L+V+ ++ ++ R GF V E + L++D + G Sbjct: 1 MNKVLIVEDDELIAELERDYLEAGGFEVELIFDGNEGLNRAMAGGW-DALILDVMLPGKS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E VR+ + V + + + I G GA+ +L+KPF+ L ++ Sbjct: 60 GFEVCREVRKSL---HLPVIMVTAKKEDVDKIRGLGLGADDYLVKPFSPAELVARVKSHI 116 Query: 119 QMQKS---KDENQFLDAI 133 Q+ + E Q DAI Sbjct: 117 QIHERLLEHREQQKEDAI 134 >gi|317498308|ref|ZP_07956606.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894384|gb|EFV16568.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 208 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D ++ K + +D + V A S +A K ++P+ +++D M + Sbjct: 11 ILIIDDDLMLLKTAEEILSDQ-YNVSVAKSGIQALNLLNKNIIPDLILLDIDMPQMDGYE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++++ + + +L + + + G +AGA +++KPF +E L + + Sbjct: 70 TLEEIKKISGCELIPIIFLTGFSEMDYEVRGLKAGAVDYIVKPFAKEILLARVERHLERY 129 Query: 122 KSKDENQFLD 131 + + + ++ Sbjct: 130 QQRQHKKSME 139 >gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + F + GF V A + F + + +V+D + + Sbjct: 2 RILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGL-FFAQNYSYDCIVLDIMLPVIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G +G++ +L KPF+ E L + + + + Sbjct: 61 TILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRK 119 >gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 305 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD S GF V ATS A ++ + P+ +++D M G+ F Sbjct: 11 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDIILLDAVMPGMDGFD 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ V V ++ + E ++ AG +L KP N + LR +R Sbjct: 70 TCTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129 Query: 122 KSKDENQF-LDA 132 +S + LDA Sbjct: 130 RSAQSARVALDA 141 >gi|256819054|ref|YP_003140333.1| two component transcriptional regulator, winged helix family [Capnocytophaga ochracea DSM 7271] gi|256580637|gb|ACU91772.1| two component transcriptional regulator, winged helix family [Capnocytophaga ochracea DSM 7271] Length = 251 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + GF V A + E E +KE + ++D M Sbjct: 17 KHILLVEDDPNFGTVLKDYLVMSGFDVTLAKNGMEGFEKFKKETY-DMCILDVMMPYKDG 75 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + +L E +I G R+GA+ +L KPF+ E L +R + Q + Sbjct: 76 FTLAKEIREKDEKIPIIFLTARTMREDVIKGYRSGADDYLNKPFDSEILLMKIRSILQRK 135 Query: 122 KSK 124 + Sbjct: 136 SIE 138 >gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 248 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 22 RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 81 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 137 Query: 121 QK 122 + Sbjct: 138 PR 139 >gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 230 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + GF A S + E + L++D + Sbjct: 1 MSRILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHN-FDLLILDLGLPDRD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + +R + + L D +AG AGA+ ++ KPF L +R Sbjct: 60 GFQILKELRGQGET--LPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARL 117 Query: 119 QMQ--KSKDENQFLD 131 + Q K+ D+++ L Sbjct: 118 RNQPSKNADDDKTLS 132 >gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 226 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 1 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 59 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 Query: 121 Q 121 Sbjct: 118 H 118 >gi|71281676|ref|YP_267431.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71147416|gb|AAZ27889.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 246 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++LLV+ + + GF V + +K + +++D + G Sbjct: 1 MYNILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKKNTT-DIVLLDVMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +RQ V + L D + G AGA+ +++KP L + Sbjct: 60 GIEVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRALLARINRQL 119 >gi|71066368|ref|YP_265095.1| putative hybrid two-component sensor and regulatory protein [Psychrobacter arcticus 273-4] gi|71039353|gb|AAZ19661.1| putative hybrid two-component sensor and regulatory protein [Psychrobacter arcticus 273-4] Length = 2284 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD S VRKV GF V A +A E +E+ P+ +++D M + Sbjct: 2159 TTILVVDDSVTVRKVTSRFLERHGFNVVLAKDGIDALEIL-QEMTPDLMLLDIEMPRMDG 2217 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR + + + + G N ++ KPF L ++ L Sbjct: 2218 FEVATQVRLNGCLQHLPIIMITSRTGERHRERALKIGVNDYIGKPFQENQLLDKIQSLL 2276 >gi|304320054|ref|YP_003853697.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis HTCC2503] gi|303298957|gb|ADM08556.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis HTCC2503] Length = 459 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V A EA E + P+ +++D M G+ F Sbjct: 4 RVLVVDDLAPNVKLLEAKLRAEYFEVITALGGREAIELARTQS-PDIILLDVMMPGIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ PL + V + IAG AGA+ FL KP L +R L ++ Sbjct: 63 ETCKLLKEDPLTRHIPVVMVTALDQRSDRIAGLEAGADDFLTKPVQDLALFARVRNLSRL 122 Query: 121 QKSKDENQFLDA 132 ++ DE + A Sbjct: 123 KQMTDELRHRHA 134 Score = 54.8 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 33 SVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYLLMEVDFEKMI 90 E + + LP+ +++D +E + +R + + + + D +++ Sbjct: 187 DSRELLDRIRTD-LPDMIMVDLGLESYDPLRLCSAIRSAEGSRLLPLLAIADQEDTRRLV 245 Query: 91 AGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G N +L++P + + + +R + + Sbjct: 246 KALDIGVNDYLMRPIDVQEMAARVRTQLRRK 276 >gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] Length = 234 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M S+L+ + + ++ G+ V +A +A E + +++D + G Sbjct: 1 MKESILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRW-DLIILDIMLPGF 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E + +R + L + E ++G GAN ++ KPF E L +R Sbjct: 60 SGIEILRRIRSKD--KQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAA 117 Query: 118 PQMQKSKDEN 127 +++ + E Sbjct: 118 LRIKSAGTEE 127 >gi|299541709|ref|ZP_07052039.1| signal transduction histidine kinase, LytS [Lysinibacillus fusiformis ZC1] gi|298725804|gb|EFI66438.1| signal transduction histidine kinase, LytS [Lysinibacillus fusiformis ZC1] Length = 1002 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 2/126 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + KV + + + + E+ ++ + L++D M Sbjct: 673 KKILIVDDDAVNLKVLIDILTQENYSIIAIDNGHHVFEYLTQQPSIDLLILDIMMPSISG 732 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E VRQ T++ + L V E MIA + GAN FL KP + L+ +R L Sbjct: 733 YEICQQVRQNYTSTELPILMLTAAVRPEDMIAAFQTGANDFLHKPLDATELKTRVRNLLL 792 Query: 120 MQKSKD 125 +++S + Sbjct: 793 LKESAE 798 >gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1465 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1207 TLLLVEDNKDLCQLIKLQLEDM-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1264 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1265 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1324 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1325 RKLFRERIRQQMENQ 1339 >gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 240 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L++D +R++ ++GF +EA + +A + + ++ D M + Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVF-SNVQIDLVIADIMMPMMDG 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++++ ++V +L + D I G + GA+ ++ KPFN + ++ L + Sbjct: 71 Y-ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRR 128 >gi|210617024|ref|ZP_03291359.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787] gi|210149547|gb|EEA80556.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787] Length = 233 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + G+ V +A EA + +KE + + L++D M + Sbjct: 3 MFKILVCDDDKEIVEAIEIYLTQEGYEVLKAYDGEEAIQTLKKEHV-DLLIMDVMMPRLD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L + + Sbjct: 62 GIRATLKIREENS-LPIIILSAKSEDADKILGLNIGADDYVTKPFNPLELVARAKSQLRR 120 >gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] Length = 221 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +L+V+ ++++ + + V A+ E K+ + +++D M Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQS-FDLVLLDVMMPN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + F + + +++ + L + E + G G + ++ KPF+ L + + Sbjct: 60 LNGFEVA-KMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 223 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + G+ V A + E + +V+D M + + Sbjct: 2 NILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLAL-EFDFDVIVLDVMMPKMDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ TD V +L D + G GA+ +L+KPF+ L +R L + Sbjct: 61 -EVLRRLRKETDTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119 Query: 123 SKDENQFLDA 132 +E Q A Sbjct: 120 IHEEEQLQVA 129 >gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium bovis AF2122/97] gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium bovis AF2122/97] gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 253 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G V A + + +V+D + G+ F Sbjct: 24 RILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L IAG GA+ +L KPFN + L +R L + Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 224 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R + + + + + +A ++ + +++D + G+ Sbjct: 2 RLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADY-DGIILDIMLPGLNGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D V +L E + G GA+ +L+KPF+ E L +R + + + Sbjct: 61 ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120 Query: 123 SKDENQF 129 + N+ Sbjct: 121 ALVSNRL 127 >gi|302871492|ref|YP_003840128.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574351|gb|ADL42142.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 234 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++ +VD + ++ G+ V S EK P+ +++D + Sbjct: 5 TVYVVDDEKDILELVSEYLTQKGYAVRTFESGESFLGEFEKSE-PDIVILDIMLPDIDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +DV + L + + + G G++ ++ KPF+ L ++++ + Sbjct: 64 EICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120 >gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C] gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C] Length = 1828 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1708 RVLIVDDDVRNVFALTSVLEQHGLAVLYAENGREGIEVLEQNDDVAVVLMDIMMPEMDGY 1767 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+MP + + L + +GA+ ++ KP + L M + + Sbjct: 1768 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVEPDYLLTVMEQHMR 1826 >gi|291618521|ref|YP_003521263.1| BaeR [Pantoea ananatis LMG 20103] gi|291153551|gb|ADD78135.1| BaeR [Pantoea ananatis LMG 20103] Length = 279 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+ + + + G A A K L P+ +++D + + Sbjct: 54 ILVAEDDFEISDILMSYIKRAGMKAVHAAEGESALALI-KTLQPDLVLLDIQLPLIDGWN 112 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ +R+ ++ V + + G R GA+ +++KPFN + + + + Sbjct: 113 VLSTLRKE---SNTPVIMVTALDQDIDKLMGLRLGADDYIVKPFNPSEVVARIEAVLRRA 169 Query: 122 KSKDENQFL 130 K++ Q L Sbjct: 170 KNQAVPQSL 178 >gi|269968510|ref|ZP_06182517.1| putative two-component response regulator [Vibrio alginolyticus 40B] gi|269826881|gb|EEZ81208.1| putative two-component response regulator [Vibrio alginolyticus 40B] Length = 225 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + F G + A + + E + +++D + + Sbjct: 1 MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + M+ G + GA+ +L KPF+ + L M L + Sbjct: 60 GLTMCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119 Query: 121 QK 122 + Sbjct: 120 YR 121 >gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273] gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272] gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272] gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273] Length = 229 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLE 118 Query: 120 MQK 122 +K Sbjct: 119 SRK 121 >gi|254472023|ref|ZP_05085424.1| DNA-binding response regulator [Pseudovibrio sp. JE062] gi|211959225|gb|EEA94424.1| DNA-binding response regulator [Pseudovibrio sp. JE062] Length = 242 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R+ A S A K + +V+D M G Sbjct: 8 ILIVDDHRDIRESLARYLTKNNMRTTVAESAAAA-RKVLKNSSIDLVVLDIMMPGEDGL- 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + V L + + G GA+ ++ KPFN L +R + + Sbjct: 66 SLCRHLVETNQAPVILLTAMAEDTDRVVGLEIGADDYVTKPFNPRELLARIRAVLRR 122 >gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 1014 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + ++V + + G V A EA + L +D M + Sbjct: 747 RVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALT-AYSHSPFDLLFMDCQMPNMDGY 805 Query: 62 -FIAHVRQMPLGTD---VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R + + +AG + +L KPF +R + Sbjct: 806 EATRAIRADEKQHHKTTCPIIAMTAHTLPGDRERCLKAGMDDYLGKPFTMRQVRTLLNRW 865 Query: 118 PQMQK 122 + Sbjct: 866 LSARN 870 Score = 53.7 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 7/111 (6%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + R+ + ++G A +A + + +++ ++ + Sbjct: 607 LIVDPHPLTRRSVQQQLREWGIKAKTADHGKKALAMLQAQN-FQIILVALTLPDMPGREL 665 Query: 63 IAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 I H + + L + I+ A S+L KP L Sbjct: 666 IQHCCDVAQTVPKHIITLGLTGQKLPPCRIS--DATTVSYLTKPIRPSKLL 714 >gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] Length = 225 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + +V + S K+ + +++D + Sbjct: 4 QKILIVEDEENIAEVLIAYAKQQNYETEHFNSGK-GVVSFVKQNAVDLILLDLMLPDVDG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R + + + L + + + G GA+ ++ KPF+ + + ++ + + Sbjct: 63 IELCKKIRA---FSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLR 119 Query: 120 MQKSKDEN 127 N Sbjct: 120 RTSQPKTN 127 >gi|325109884|ref|YP_004270952.1| response regulator receiver protein [Planctomyces brasiliensis DSM 5305] gi|324970152|gb|ADY60930.1| response regulator receiver protein [Planctomyces brasiliensis DSM 5305] Length = 153 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 3/133 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L+ D + R++ +D +++ A E P+ +++D M + Sbjct: 13 NRILIADDNQQNRELVEAYLSDEDYVIEMAHDGQHTLAQVES-FQPDLILLDIMMPKMSG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++Q + V + + + AGA+ FL KP NR L+ +R L + Sbjct: 72 FEVCQQLKQQEATQSIPVLMITALRETADIEKAVDAGADDFLSKPVNRVELKTRVRSLLR 131 Query: 120 MQKSKDENQFLDA 132 ++ +E L A Sbjct: 132 VRHLTNERDRLLA 144 >gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii] gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii] Length = 823 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVL 60 +LLV+ + + +KV L +G +V T EA E + + +++D M G+ Sbjct: 689 KRVLLVEDNLVNQKVASRLLQKYGHVVITVTDGLEAVEALKSDHKAYDLVLMDIQMPGMD 748 Query: 61 EF--IAHVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +R+ + + L AG + +L KPF+ + + +R Sbjct: 749 GLEATRRIRKDELGSGWHKIPIIGLTANAMKGYQDICYEAGMDGYLPKPFDIKQVLSTIR 808 >gi|291548407|emb|CBL21515.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 246 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 + V+ +R++ + GF + E + K+ +P +++D + G Sbjct: 24 IYCVEDERNIRELLVYTLETTGFEAEGFETGAE-LDTAMKKNMPELILLDIMLPGEDGYN 82 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ D+ V + + + G GA+ ++ KPF ++ + + Sbjct: 83 ILKRLKSDTRTRDIPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRRC 142 Query: 122 KSKDENQFL 130 + E + L Sbjct: 143 ARQSEEREL 151 >gi|291278719|ref|YP_003495554.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] gi|290753421|dbj|BAI79798.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] Length = 231 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +++ + + G VF + EA + EL P+ +++D + + Sbjct: 4 QKIFIIEDDKKIANIVSSYLKHEGVEVFHFINGKEALDAVI-ELNPDLIILDLMLPDISG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++M D+ + L + E+ +AG GA+ ++ KPF+ L + ++ + + Sbjct: 63 EELCQDIKEM---VDIPIIMLTAKSSEEEKLAGFALGADDYVTKPFSPRELIYRVKAILK 119 Query: 120 MQKSKDENQF 129 + + Sbjct: 120 RVRKSSSEKL 129 >gi|288925412|ref|ZP_06419346.1| putative response regulator receiver domain protein [Prevotella buccae D17] gi|288337883|gb|EFC76235.1| putative response regulator receiver domain protein [Prevotella buccae D17] Length = 1298 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D H ++ F V +A + E + LP+ +V D M + Sbjct: 1055 TILVIDDEHDTVELLERNL-AADFKVIKAYDGRQGLEEAAR-TLPDIIVCDLMMPNMDGM 1112 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F+ ++ + V + E MI GA+++L KP + LR + L Sbjct: 1113 EFLHTLKSDKKLAHIKVIIFTAKTSEEDMIEAFDQGADAYLTKPISLRLLRKRIDRLVAQ 1172 Query: 121 QKSKD 125 + + Sbjct: 1173 SNTAE 1177 >gi|224537326|ref|ZP_03677865.1| hypothetical protein BACCELL_02204 [Bacteroides cellulosilyticus DSM 14838] gi|224521057|gb|EEF90162.1| hypothetical protein BACCELL_02204 [Bacteroides cellulosilyticus DSM 14838] Length = 1313 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 10/138 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LL+D + + V + +F + + V A +A + K + ++ D + E Sbjct: 1065 ILLIDDNTELLFVMKEMFRER-YTVLTAADGQQAWDKL-KNNEVDVVICDVMLPDANGWE 1122 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A ++ + V L + E +A AGA+ ++ KPF + L + L + Sbjct: 1123 LCARMKGDLRFNHIPVIILTAKNGIEDRVASYEAGADGYIAKPFELKILFARVDNLIRSS 1182 Query: 122 KSK------DENQFLDAI 133 K + +EN L+++ Sbjct: 1183 KMRQAAFRKEENLDLESL 1200 >gi|78224192|ref|YP_385939.1| response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase [Geobacter metallireducens GS-15] gi|78195447|gb|ABB33214.1| response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase [Geobacter metallireducens GS-15] Length = 361 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 55/136 (40%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++++VD + ++ + + + V A + +K P+ +++D +M G+ F Sbjct: 9 NIMIVDDTPANLRLLETMLQEKNYRVLLFPRADIALKAAKKNP-PDLVLLDITMPGMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ V +L + + G ++ KPF E + + + Sbjct: 68 QFCASLKADSRLCSTPVIFLSGLNEPADKVKAFSLGGVDYITKPFQLEEVHARVETHLNL 127 Query: 121 QKSKDE----NQFLDA 132 ++ + E N+ L++ Sbjct: 128 RRLQMEVESHNRNLES 143 >gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 234 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEKQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|294627534|ref|ZP_06706117.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598165|gb|EFF42319.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 227 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + V + G+ +A + P+ +++D + G L+ Sbjct: 10 VLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQ-QPDLVLLDLMLPNRGGLD 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V V + V+ + G GA+ ++ KPF+ + ++ + + Sbjct: 69 ICRDLRKESA---VPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRH 125 Query: 122 K 122 + Sbjct: 126 R 126 >gi|253689068|ref|YP_003018258.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755646|gb|ACT13722.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 229 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ V G+ V A+ + P+ +++D + + Sbjct: 4 KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQKGLHMALTSK-PDLILLDVMLPKMNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +RQ +++ V + D + I R GA+ +++KP+N + + ++ + + Sbjct: 63 SEVLSALRQR---SNIPVIMVTAIGDEPERIGALRYGADDYVVKPYNPQEVVARVQAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM 15053] gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM 15053] Length = 240 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + L G+ V +A + EA + + + + +++D M + Sbjct: 11 TVLVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVTDKV-HLIILDVMMPELNGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ V L + + + G GA+ ++ KP+N L ++ + Sbjct: 70 SALMKIREKN-NIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRR 126 >gi|153833378|ref|ZP_01986045.1| response regulator receiver domain protein [Vibrio harveyi HY01] gi|148870387|gb|EDL69313.1| response regulator receiver domain protein [Vibrio harveyi HY01] Length = 225 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + F G + A + + E + +++D + + Sbjct: 1 MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + M+ G + GA+ +L KPF+ + L M L + Sbjct: 60 GLTMCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119 Query: 121 QK 122 + Sbjct: 120 YR 121 >gi|153816384|ref|ZP_01969052.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756] gi|145846272|gb|EDK23190.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756] Length = 240 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +++VD + + L G+ V A EA E+ + + +++D M + Sbjct: 12 VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPV-DLILLDVMMPRLNGLS 70 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A ++ + V L + + ++G GA+ ++ KP+N L ++ + ++ Sbjct: 71 ALMKLREKYR-IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRA 129 >gi|91213879|ref|YP_543865.1| putative response regulator [Escherichia coli UTI89] gi|91075453|gb|ABE10334.1| putative response regulator [Escherichia coli UTI89] Length = 240 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + + + R D G+ + AR +K+ + +++D + Sbjct: 6 KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 65 LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 122 Query: 120 MQKSKDENQFLD 131 Q++ +N L Sbjct: 123 RQEAMGQNILLA 134 >gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273] Length = 229 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 8 RLLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L + E + G G + +L+KPF L+ +R L + Sbjct: 66 EVIQKIRDEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271] gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271] Length = 233 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E EK + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|189466394|ref|ZP_03015179.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM 17393] gi|189434658|gb|EDV03643.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM 17393] Length = 1404 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R R + D+ + V EAT+ EA + + + ++++ D M + Sbjct: 1152 TILVVEDNADMRGYIRSILRDY-YNVLEATNGAEALDVLNNQSV-DFIISDLMMPVMDGI 1209 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V++ + + L + E + R G + +LLKPF+ L + + Sbjct: 1210 ELSRRVKEAFAISHIPFLMLTAKTSPETRLESYRTGVDEYLLKPFDETLLLTRIENILDN 1269 Query: 121 QKSKDE 126 ++ Sbjct: 1270 RRRYQR 1275 >gi|108757005|ref|YP_628980.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108460885|gb|ABF86070.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 1967 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +G V A S E + EK+ +++D M + Sbjct: 1832 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESAREGLDQLEKDADIELVLMDVMMPEMDG 1891 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+M + + L + AGA+ ++ KP + E L +R Sbjct: 1892 YQAMRAIRRMERFVHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 1950 Score = 45.2 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 4/112 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 LL+V+ + R+ L + E E + +V+D + + E Sbjct: 1688 LLVVEDDPVHRQTLTELLGSDDVQTVAVGTAAE-ALAALAERRFDCMVLDLGLPDMPGTE 1746 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 I V + + R A + ++K + E L Sbjct: 1747 LIRRVHEAHGAGGPPLIVYTGRELTRAQETELRRVAEAIVVKDAQSPERLLE 1798 Score = 37.9 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%) Query: 17 GRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTD 74 R GF + +T V +A + + P + +D + + + ++ Sbjct: 1579 LRAAAQGTGFKLLVSTEVEDALDAV-RNTRPAAVAVDLDLPEMAGWVVLDRLKHDASTRA 1637 Query: 75 VFVYYLLMEVDFEKMIAGARAGANSFL 101 + VY + + + GA L Sbjct: 1638 LPVYTVSV---EDHRERSLNLGAIGHL 1661 >gi|86608396|ref|YP_477158.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556938|gb|ABD01895.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 341 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD R L F V EAT+ EA E E+ L P+ +++D M + F Sbjct: 23 VLVVDDQASSRLYIGELLRSAHFRVSEATNGEEALEAVER-LRPDLVLLDVLMPNMSGFD 81 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ L + V + D + G + GA+ L KPF+ L +R + Sbjct: 82 VCRQLKANELTRLIPVVLITALTDRSNRLMGMQVGADDILTKPFDHVELLARVRSSIHQK 141 Query: 122 KSKDEN 127 + ++ Sbjct: 142 RLNEDL 147 >gi|18310175|ref|NP_562109.1| two-component response regulator [Clostridium perfringens str. 13] gi|110800369|ref|YP_695848.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168205438|ref|ZP_02631443.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209683|ref|ZP_02635308.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213127|ref|ZP_02638752.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168217845|ref|ZP_02643470.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169346754|ref|ZP_02865707.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|18144854|dbj|BAB80899.1| two-component response regulator [Clostridium perfringens str. 13] gi|110675016|gb|ABG84003.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169297106|gb|EDS79227.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170663026|gb|EDT15709.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712265|gb|EDT24447.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170715454|gb|EDT27636.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|182380100|gb|EDT77579.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 225 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ + +R + G+ VF+A + EA + +KE + ++D M+G+ F Sbjct: 2 NILIAEDEQDIRNLLELHLLKEGYTVFKAVNGLEALDILKKEH-IHLALLDVMMDGIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-Q 121 ++ + + + V +L +++ + I G GA+ +++KPF L ++ + Sbjct: 61 -NLLKMLREWSQIPVIFLTAKIEDDDKILGLGLGADDYVIKPFKPVELMARIKSNLRRCY 119 Query: 122 KSKDENQFLD 131 K EN+ + Sbjct: 120 KYSGENELIK 129 >gi|113968825|ref|YP_732618.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. MR-4] gi|113883509|gb|ABI37561.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. MR-4] Length = 348 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 56/130 (43%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD + ++ + ++ + + ATS +A + LP +++D M + F Sbjct: 9 TLLVVDDTPDNIQIIHGILSEQ-YTIRAATSGEKALKLASTHPLPELILLDVMMPEMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P+ + + V ++ + D G GA ++ KP + L+ + + Sbjct: 68 ETCRRLKRDPVTSKIPVVFVTAKTDTIDEQTGFELGAVDYISKPISPAVLKVRTQTHLAL 127 Query: 121 QKSKDENQFL 130 + + L Sbjct: 128 SNQARQLEAL 137 >gi|332880362|ref|ZP_08448040.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681807|gb|EGJ54726.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1209 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 4/115 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+ + + R + L F V A E +E P+ ++ D M + Sbjct: 1097 TVLVAEDNEQFRTFMKDLLGQ-DFTVLTAADGQEGLAMA-REYGPDLIISDVMMPHMDGY 1154 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 F V+ + L + E AGA+SF+ KPF+ + L +R Sbjct: 1155 AFCRAVKDDVQCCHIPFILLTAKNSSESRSGAYEAGADSFIAKPFDIDVLHSRIR 1209 >gi|325498139|gb|EGC95998.1| DNA-binding transcriptional activator KdpE [Escherichia fergusonii ECD227] Length = 225 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 248 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R + + G+ V A + A + P+ +V+D + + F Sbjct: 14 NVLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRG-QPDLIVLDVGLPDIDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V +L D E I G +G + ++ KPF+ + + +R + + Sbjct: 73 AVTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRR 130 >gi|300772342|ref|ZP_07082212.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300760645|gb|EFK57471.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 225 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++LLV+ + + G V EA +++ + ++D M + Sbjct: 1 MKYNILLVEDDEDFGFMLKQYLELSGLEVRLIAHPQEAEALLDQDFTFHLAILDVMMPYM 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + + +L + + G + GA+ ++ KP + E L ++ + + Sbjct: 61 SGFTLAQKILSRYPGFPFIFLTAKDQKIDKLTGLKIGADDYITKPCDPEELVLRIQNIVR 120 Query: 120 MQK 122 + Sbjct: 121 RSQ 123 >gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 226 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|219667612|ref|YP_002458047.1| response regulator receiver modulated diguanylate cyclase [Desulfitobacterium hafniense DCB-2] gi|219537872|gb|ACL19611.1| response regulator receiver modulated diguanylate cyclase [Desulfitobacterium hafniense DCB-2] Length = 455 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD K+ ++V A + EA E + P+ +++D M + Sbjct: 161 RVLIVDDQLFNLKLLESAL-KEDYIVMTADNGIEALELATGKSQPDIILLDIIMPVMDGY 219 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+MP D+ V +L + + + G ++ KPF+ ++ +R + Sbjct: 220 EVCIRLREMPETRDIPVIFLSALKNEKNEEYALQLGVVDYITKPFSLPIIKGRLRNHVEQ 279 Query: 121 QKSKDENQ 128 +K +D + Sbjct: 280 KKYRDRQK 287 >gi|160887918|ref|ZP_02068921.1| hypothetical protein BACUNI_00322 [Bacteroides uniformis ATCC 8492] gi|156862604|gb|EDO56035.1| hypothetical protein BACUNI_00322 [Bacteroides uniformis ATCC 8492] Length = 1360 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 4/129 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + + + + + F + A++ EA + EL+P+ +V D M + Sbjct: 1115 LIVDDNEDLVAFMKDSLSLY-FRIQSASNGREAWQKIP-ELMPDIIVSDVMMPEMDGNEL 1172 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V+ +D+ + L E + G GA+ ++ KPFN E L MR+L + K Sbjct: 1173 CRWVKTDKRTSDIPMILLTARQAVEDKVEGLTIGADDYVTKPFNVEILILRMRKLIDLSK 1232 Query: 123 SKDENQFLD 131 + +D Sbjct: 1233 KRKAKSLID 1241 >gi|159898682|ref|YP_001544929.1| GAF sensor-containing adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159891721|gb|ABX04801.1| adenylate/guanylate cyclase with GAF sensor(s) [Herpetosiphon aurantiacus ATCC 23779] Length = 1020 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + ++ + L D G+ V A S EA +F + P+ +++D S+ G+ Sbjct: 9 VLIVEDDLSISRMFQLLLRDAGYRVSLANSSEEALQFVRV-ITPDIILLDISLPGMNGVD 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H+R P + + + D +A AGA+ L+KP L +R + ++Q Sbjct: 68 LTRHLRSNPAIPFIPIIQITALGDLRTKVAALDAGADDILVKPIELSELLARLRVMLRLQ 127 Query: 122 KSKD 125 K++ Sbjct: 128 KNRR 131 >gi|116749367|ref|YP_846054.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698431|gb|ABK17619.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 476 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + R + D G+ + A S EA E ++ P+ +++D M G+ Sbjct: 1 MKPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDT-PDLMLLDIWMPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + V + + E + R GA F+ KP + E + +++ Sbjct: 60 DGLAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALD 119 Query: 120 MQKSKDEN 127 + ++EN Sbjct: 120 FHRLEEEN 127 >gi|304398764|ref|ZP_07380635.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304353711|gb|EFM18087.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 231 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 47/126 (37%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ V + V + + P+ +++D + G+ Sbjct: 4 KRILIIEDDADAAGVLEAYLKRENYEVMIVGDGPGGLDAARR-WQPDLILLDIMLPGMNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +A +R+ D V + D I R GA+ +++KP++ + ++ + + Sbjct: 63 TEVLAALRRRD---DTPVIMVTAMSDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119 Query: 120 MQKSKD 125 ++ Sbjct: 120 RSQNSA 125 >gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] Length = 233 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 4/127 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+ + + + GF V A EA E + + + +++D M Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGA-DLIIMDLMMPR 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++++ + V + L + + + G GA+ ++ KPFN L + Sbjct: 60 LSG-EEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNL 118 Query: 119 QMQKSKD 125 + S D Sbjct: 119 RRYHSYD 125 >gi|220906185|ref|YP_002481496.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219862796|gb|ACL43135.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 123 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ + + R + G+ V A + E + P+ +++D S+ Sbjct: 1 MPKILLVEDNEMNRDMLSRRLTRKGYDVTIAVDGQQGVELAHTQT-PDLILMDMSLPVID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ + V L AG + + KP + L + L Sbjct: 60 GWEATRQLKASSQTQAIPVIALTAHAMSGDREKALEAGCDDYDTKPIDLPQLLSKIEALL 119 >gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 227 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + GF EA +E P+ +++D + G + Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIF-RESKPDLVLLDLMLPGLDGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + +R + L + D ++ G +GA+ +++KPFN + L +R + Sbjct: 63 EVCSSIRAESG---TPIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLR 118 >gi|26246669|ref|NP_752709.1| DNA-binding transcriptional activator KdpE [Escherichia coli CFT073] gi|110640911|ref|YP_668639.1| DNA-binding transcriptional activator KdpE [Escherichia coli 536] gi|117622899|ref|YP_851812.1| DNA-binding transcriptional activator KdpE [Escherichia coli APEC O1] gi|191174051|ref|ZP_03035567.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli F11] gi|218557620|ref|YP_002390533.1| DNA-binding transcriptional activator KdpE [Escherichia coli S88] gi|218688498|ref|YP_002396710.1| DNA-binding transcriptional activator KdpE [Escherichia coli ED1a] gi|227884331|ref|ZP_04002136.1| KDP operon transcriptional regulator [Escherichia coli 83972] gi|237707336|ref|ZP_04537817.1| KDP operon transcriptional regulatory protein kdpE [Escherichia sp. 3_2_53FAA] gi|300989943|ref|ZP_07179019.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 45-1] gi|300996532|ref|ZP_07181462.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 200-1] gi|301046025|ref|ZP_07193206.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 185-1] gi|306812887|ref|ZP_07447080.1| DNA-binding transcriptional activator KdpE [Escherichia coli NC101] gi|331645852|ref|ZP_08346955.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli M605] gi|331656719|ref|ZP_08357681.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli TA206] gi|26107068|gb|AAN79252.1|AE016757_156 KDP operon transcriptional Regulatory protein kdpE [Escherichia coli CFT073] gi|110342503|gb|ABG68740.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli 536] gi|115512023|gb|ABJ00098.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli APEC O1] gi|190905659|gb|EDV65282.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli F11] gi|218364389|emb|CAR02068.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli S88] gi|218426062|emb|CAR06879.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli ED1a] gi|222032441|emb|CAP75180.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli LF82] gi|226898546|gb|EEH84805.1| KDP operon transcriptional regulatory protein kdpE [Escherichia sp. 3_2_53FAA] gi|227838417|gb|EEJ48883.1| KDP operon transcriptional regulator [Escherichia coli 83972] gi|300301998|gb|EFJ58383.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 185-1] gi|300304506|gb|EFJ59026.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 200-1] gi|300407218|gb|EFJ90756.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 45-1] gi|305853650|gb|EFM54089.1| DNA-binding transcriptional activator KdpE [Escherichia coli NC101] gi|307552553|gb|ADN45328.1| transcriptional regulatory protein KdpE [Escherichia coli ABU 83972] gi|312945229|gb|ADR26056.1| DNA-binding transcriptional activator KdpE [Escherichia coli O83:H1 str. NRG 857C] gi|315287128|gb|EFU46542.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 110-3] gi|315292070|gb|EFU51422.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 153-1] gi|320194139|gb|EFW68771.1| DNA-binding response regulator KdpE [Escherichia coli WV_060327] gi|323952738|gb|EGB48606.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323958447|gb|EGB54153.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|324006265|gb|EGB75484.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 57-2] gi|324010423|gb|EGB79642.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 60-1] gi|330910451|gb|EGH38961.1| DNA-binding response regulator KdpE [Escherichia coli AA86] gi|331044604|gb|EGI16731.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli M605] gi|331054967|gb|EGI26976.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli TA206] Length = 225 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2142 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +G V A S E EK+ +++D M + Sbjct: 2008 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESGAEGISLLEKDTEVELVLMDVMMPEMDG 2067 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R M + + L + AGA+ ++ KP + E L +R Sbjct: 2068 YQAMRAIRGMERFAHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 2126 Score = 58.3 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 SLL+V+ + R+ L ++ +A+E + +V+D + Sbjct: 1862 RSLLIVEDDDVHRQALTELLGSEDVQTVAVSTAAQAQEAI-AGRRFDCMVMDLGLPDLPG 1920 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 + + + + R A + ++K + E L Sbjct: 1921 ADLLRQLHAEHGASTPPAIVYTGRELTRAQETELRRLAEAIIVKDAQSPERLLE 1974 Score = 37.9 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 6/87 (6%) Query: 17 GRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTD 74 R GF + +T A E V D + + + ++ Sbjct: 1755 LRAAAQGVGFKLLVSTEAESALEMARNARTVAVAV-DLDLPDMAGWVVLDRLKHDAATRA 1813 Query: 75 VFVYYLLMEVDFEKMIAGARAGANSFL 101 + VY + + GA L Sbjct: 1814 LPVYTVSG---EDHRDRSLTLGALGHL 1837 >gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family./Y_Y_Y domain. [Bacteroides xylanisolvens XB1A] Length = 1465 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1207 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKIHL-YHPDIVVTDQMMPEMDGL 1264 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1265 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1324 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1325 RKLFRERIRQQMENQ 1339 >gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] Length = 231 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + VF+ + EA E +K + ++D + V Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-AIDLAILDIMLPDVSGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + I G GA+ ++ KPF L ++ + Sbjct: 63 TICQKIREKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|89891885|ref|ZP_01203385.1| response regulator [Flavobacteria bacterium BBFL7] gi|89515738|gb|EAS18540.1| response regulator [Flavobacteria bacterium BBFL7] Length = 387 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++LL++ +R+V + ++ + V EA E E+ +KE + ++ D M Sbjct: 1 MANILLIEDEAAIRRVLSKILSEENKNYTVTEAVDGLEGIEYIKKEDY-DLVLCDIKMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + ++ V + D + + R GA ++ KP + L +R Sbjct: 60 MDGVEVLEAMKKIKPEIPVVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNAL 119 Query: 119 QMQKSKDENQFLD 131 + EN+ L Sbjct: 120 DRKSLVVENKRLK 132 >gi|75907788|ref|YP_322084.1| response regulator receiver (CheY) modulated serine phosphatase [Anabaena variabilis ATCC 29413] gi|75701513|gb|ABA21189.1| Response regulator receiver (CheY) modulated Serine phosphatase [Anabaena variabilis ATCC 29413] Length = 396 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D +VR V + + G+ + E K L P ++ D M G+ Sbjct: 1 MVKILVIDDDPVVRTVLKRTLENQGYETTVVNNGEEGIIQA-KLLRPALIICDWVMSGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARAGANSFLLKPFNRETLRFAM 114 V+ P F L + + + + G AGA+ F+ KP L+ + Sbjct: 60 GLEVCRQVKANPELATSFFILLTAKGAAPGEEKDRVKGLDAGADEFISKPIEMIELKARV 119 Query: 115 RELPQMQKSKDENQ 128 R ++ + + Q Sbjct: 120 RAGLRLHQLNQDLQ 133 >gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120] gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120] Length = 236 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G+ V A E + L++D + G L Sbjct: 8 RILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNY-DLLILDWMLPGKTGL 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ G V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 67 EICQELRRQ--GKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 124 Query: 121 QKSK 124 S+ Sbjct: 125 SSSQ 128 >gi|117924809|ref|YP_865426.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117608565|gb|ABK44020.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 250 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ D + ++ F V A S A + ++ + +V+D + Sbjct: 7 ILVCDDDPDILRLVGDYLEQRDFRVRLADSGG-AMKQILEQTQIDVVVLDLILPDEDGLQ 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R +++ + L + + I G GA+ ++ KPF+ L ++ + + Sbjct: 66 LCRELRAR---SNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRA 122 Query: 122 KSKDE 126 +S E Sbjct: 123 RSLPE 127 >gi|323170809|gb|EFZ56459.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli LT-68] Length = 225 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|320539293|ref|ZP_08038963.1| putative DNA-binding response regulator in two-component regulatory system with CpxA [Serratia symbiotica str. Tucson] gi|320030685|gb|EFW12694.1| putative DNA-binding response regulator in two-component regulatory system with CpxA [Serratia symbiotica str. Tucson] Length = 237 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +LLVD + + + L GF + A +A + N L++D M Sbjct: 2 MNKILLVDDDRELTLLLKELLEMEGFNITVAHDGEQALSLLDSS--INLLLLDIMMPKKN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 60 GIDTLKELRQH---HHTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 116 Query: 119 QMQKSKDENQFLD 131 + ++ Q +D Sbjct: 117 RRSNWNEQQQHVD 129 >gi|317481392|ref|ZP_07940460.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316902488|gb|EFV24374.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 1330 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + +R F+ + V + EA K+ P ++ D M + Sbjct: 1068 RILIVEDNDELRNYLFQSFSKI-YNVQVCNNGKEALTIV-KQFWPELILSDIMMPEMRGD 1125 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L D + ++ G GA+ +++KPF+ L+ ++ L Sbjct: 1126 ELCIAIKNDIETSHIPVVLLTALGDEKNILEGLHIGADEYIVKPFSINILKASIANLLAN 1185 Query: 121 QKSKDE 126 + + Sbjct: 1186 RALLRK 1191 >gi|319791415|ref|YP_004153055.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315593878|gb|ADU34944.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 247 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V + R E+ + +++D + G Sbjct: 9 ILIVDDDREIRELLTTYLVKNGLRVVAVPTGRHMRAALEESGPFDLIILDLMLPGEDGLT 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + L + I G GA+ +L KPF+ L +R + + Sbjct: 69 LCRDLRT-GKYKATPILMLTARSEEADRILGLEMGADDYLAKPFSARELLARIRSVMRRT 127 Query: 122 KSKDEN 127 + N Sbjct: 128 RMLPPN 133 >gi|227500882|ref|ZP_03930931.1| two component response regulator [Anaerococcus tetradius ATCC 35098] gi|227216986|gb|EEI82371.1| two component response regulator [Anaerococcus tetradius ATCC 35098] Length = 223 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 5/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + ++ N G++ A+ EA + E + +++D ++ Sbjct: 2 KVLIVEDEKKLLRLLEEGLNILGYVTDTASDGEEALDLAYVENY-DIIILDINLPKKDGF 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ +V + L D + + G GAN ++ KPF+ + L MR L + Sbjct: 61 EVLRDIRQ--FNREVNIIMLTARSDIDDRVRGLDYGANDYMTKPFDLKELDARMRSLLRR 118 Query: 121 QKSKDENQFL 130 + +E + + Sbjct: 119 KSIMEETEIM 128 >gi|171913996|ref|ZP_02929466.1| response regulator receiver sensor signal transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 383 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D ++ + + + + A S +A + P+ +++D M + Sbjct: 9 TILIIDDQEQNLQIVGTILSMMDYDIIPALSGEQAFKRLGV-RKPDLILLDVMMPEMDGL 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + V +L D ++ G ++ KPFNR L +R + Sbjct: 68 EVCRRLQANPDWSGIPVIFLSAADDKNLIVQALETGGVDYVTKPFNRAELLSRVRTHLAL 127 Query: 121 QKSKDENQFLDA 132 + ++D+ + L Sbjct: 128 KHARDDLRLLAE 139 >gi|167766414|ref|ZP_02438467.1| hypothetical protein CLOSS21_00919 [Clostridium sp. SS2/1] gi|167711823|gb|EDS22402.1| hypothetical protein CLOSS21_00919 [Clostridium sp. SS2/1] Length = 208 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D ++ K + +D + V A S +A K ++P+ +++D M + Sbjct: 11 ILIIDDDLMLLKTAEEILSDQ-YNVSVAKSGIQALNLLNKNIIPDLILLDIDMPQMDGYE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++++ + + +L + + + G +AGA +++KPF +E L + + Sbjct: 70 TLEEIKKISGCELIPIIFLTGFSEMDYEVRGLKAGAVDYIVKPFAKEILLARVERHLERY 129 Query: 122 KSKDENQFLD 131 + + + ++ Sbjct: 130 QQRQHKKSME 139 >gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 233 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + V + + +A E E + ++D + + F Sbjct: 5 TVLVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHEN-IDLAILDVMLPDIDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q+ L + V L +V I G GA+ ++ KPF L ++ + Sbjct: 64 -EILKQIRLTHNFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRR 120 >gi|149909235|ref|ZP_01897892.1| DNA-binding response regulator BaeR [Moritella sp. PE36] gi|149807759|gb|EDM67705.1| DNA-binding response regulator BaeR [Moritella sp. PE36] Length = 230 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ E + + +++D + G Sbjct: 1 MSKVLIVEDEVKIAQLLTDYLVQSNLETVMVHDGNAVLELVHNQ-YFDIILLDLMLPGKD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V + + VD + G GA+ ++ KPF+ + ++ + Sbjct: 60 GITLCKEIRQ---FSAVPIIMVTARVDEIDRLIGLELGADDYICKPFSPREVVARVKAVL 116 Query: 119 QMQKSKDE 126 + +S+ + Sbjct: 117 RRTQSQTQ 124 >gi|160896640|ref|YP_001562222.1| response regulator receiver modulated diguanylate cyclase [Delftia acidovorans SPH-1] gi|160362224|gb|ABX33837.1| response regulator receiver modulated diguanylate cyclase [Delftia acidovorans SPH-1] Length = 316 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 4/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD V + D A + EA + P+ +++D M G+ Sbjct: 21 QKVLVVDDVPDNATVICQVIKDL-CGPLVAYTGEEALALAHQH-QPDLILLDIRMPGMDG 78 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ + + +L + G GA F+ KPF L+ +R + Sbjct: 79 FEVCRRLKADLQTAHIPIIFLTALTEPHCEELGLNLGAVDFVTKPFRPAVLKARVRTHLE 138 Query: 120 MQKSKDENQFLD 131 + + + Q L Sbjct: 139 IAQQRQMLQLLS 150 >gi|77461476|ref|YP_350983.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1] gi|77385479|gb|ABA76992.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 707 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD R L + V A S EA + + + +++D M G+ F Sbjct: 15 LLIVDDYPENLISMRALLQRQDWQVITAASGFEALSLLLEHDV-DLVLLDVQMPGMDGFE 73 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +L + + G +GA +L KPF+ + L+ ++ L + Sbjct: 74 VARLMRGSQRTRLTPIIFLTANEQSQDAVIKGYASGAVDYLFKPFDPQILKPKVQALLEH 133 Query: 121 QKSKDENQFLD 131 Q+++ Q L Sbjct: 134 QRNRRALQRLS 144 >gi|17230366|ref|NP_486914.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131968|dbj|BAB74573.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 330 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 7/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R R G+ EA +A +EL P+ +++D M + F Sbjct: 12 ILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRQALAIF-QELQPDIVLLDAIMPDLDGFE 70 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 ++ + G V + D E + GA ++ KP + LR ++ L Q Sbjct: 71 CCTRLQLLEDGKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLRQRVKRLIQQF 130 Query: 120 --MQKSKDENQFLDAI 133 QK + N+ L + Sbjct: 131 HLQQKLEAANRELQRL 146 >gi|312131048|ref|YP_003998388.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907594|gb|ADQ18035.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1336 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ + +R LF+ F A + E + ++LP+ ++ D M + Sbjct: 1084 QKLLIVEDNEDLRNYLVSLFHSH-FETHSAANGKEGMDKAL-QILPDIILSDVMMPVMNG 1141 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LEF ++ P + + L + G +GA+ +++KPFN + L + L Sbjct: 1142 LEFCERIKNNPKTAHIPLILLTARAATLHELEGLESGADDYIVKPFNPKVLHTKILSLIS 1201 Query: 120 MQKSKDE 126 +K E Sbjct: 1202 NRKKAQE 1208 >gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + G+ V E + ++D + G Sbjct: 10 MSKILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHED-IDMCILDIMLPGTD 68 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR++ D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 69 GFEICKQVREV---KDIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHL 125 Query: 119 QM 120 Sbjct: 126 AR 127 >gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family protein [Streptomyces clavuligerus ATCC 27064] gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ GF V A E ++ + +V+D + G+ Sbjct: 2 RILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEY-DAIVLDVMLPGMNGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V L G GA+ ++ KPF+ L +R L + + Sbjct: 61 RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120 Query: 123 SKD 125 + Sbjct: 121 RER 123 >gi|254386383|ref|ZP_05001689.1| turgor pressure regulator [Streptomyces sp. Mg1] gi|194345234|gb|EDX26200.1| turgor pressure regulator [Streptomyces sp. Mg1] Length = 227 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + F V EA P+ +++D + + Sbjct: 1 MTRVLVVEDDPQLVRALKINLQARKFEVLEAGDGAM-ALRLAAARTPDAILLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + V + L E+ I AGA+ ++ KPF+ + L +R + Sbjct: 60 GV-EVIRGVRGWSHVPILVLSARHTSEEKIRALDAGADDYVTKPFSMDELLARLRAATRR 118 Query: 121 QKS 123 Q++ Sbjct: 119 QEA 121 >gi|171914500|ref|ZP_02929970.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 229 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ + R + + GF V A EA E + + P+++ +D M Sbjct: 2 KILIAEDDSFTRAALCEVLSAEGFGVVPAADGREAWELFKSQ-RPDFVCLDVMMPHLDGY 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V + +L + + + G GA+ ++ KPF + +R + + Sbjct: 61 EVCRRIRRDDDT--VPILFLTAKSEEIDAVLGLELGADDYMAKPFGVREILARIRAITRR 118 Query: 121 QKSKDENQ 128 Q Sbjct: 119 TGLLRRTQ 126 >gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 9/127 (7%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +LLV+ + G+ V A EA E E +++D + G Sbjct: 1 MKNFKILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVE-NTEYQLILLDIMIPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E +RQ + V + L + D + G GAN +L KPF E L +R Sbjct: 60 LNGIEVCRRIRQ---FSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIR- 115 Query: 117 LPQMQKS 123 + + +K Sbjct: 116 VYEREKL 122 >gi|89899322|ref|YP_521793.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344059|gb|ABD68262.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 234 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 4/123 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ + ++ GF+V A + + P+ +++D + + Sbjct: 3 QHLLMIEDDTRLAQMVSEYLAQSGFVVGHAGDGQTGLTDLQSDP-PDLVILDLMLPDMDG 61 Query: 62 F--IAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +P + V L + D I G GA+ +L KPF L +R + Sbjct: 62 LEVCRRIRSLPGALAQIPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVL 121 Query: 119 QMQ 121 + Sbjct: 122 RRH 124 >gi|17158720|ref|NP_478231.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134669|dbj|BAB77227.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 231 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61 +LLV+ + + ++V +A + E + + D + G+ Sbjct: 2 RVLLVEDEPDLGAAIKRTLTQQKYLVDWVLDGNDAWAYLENQWTQYTLAIFDWMLPGISG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + V L + E + G AGA+ +L+KPF L +R L + Sbjct: 62 LELCKRLRYRQSPLPVLMLTAKDRMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRRS 121 Query: 122 KSKDENQF 129 + Sbjct: 122 PQFQPQEL 129 >gi|86133169|ref|ZP_01051751.1| two-component system response regulator [Polaribacter sp. MED152] gi|85820032|gb|EAQ41179.1| two-component system response regulator [Polaribacter sp. MED152] Length = 233 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + V A E K + ++D M Sbjct: 4 KKILLVEDDPNFGTVLKDYLALNDYNVTHAKDGIEGL-IMFKNSDYDLCILDVMMPRKDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +V + +L + E ++ G GA+ +L KPF+ E L ++ + Q + Sbjct: 63 FSLAQDIRSTNKEVPIIFLTAKTLKEDVLKGYSVGADDYLNKPFDSEVLLHKIKAILQRK 122 Query: 122 KSKDENQ 128 +S + Sbjct: 123 ESDKSTE 129 >gi|312891997|ref|ZP_07751498.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295494|gb|EFQ72662.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1392 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + +R+ + + EA + E L P+ +V D SM + Sbjct: 1136 VLIVEDNSEMRQYLADSLGAS-YKISEAANGREGWHKALA-LHPDLVVSDISMPYMDGIE 1193 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L + +AG G + +L KPF+ E L ++ L + Sbjct: 1194 LSRKLKSDKRTSHIPIILLTAMASQQDQLAGLELGVSDYLTKPFHFEILNIKIKNLLHVN 1253 Query: 122 KSKDE 126 ++ E Sbjct: 1254 ETLKE 1258 >gi|304395690|ref|ZP_07377573.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304356984|gb|EFM21348.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 224 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R + VF+A ++ P+ +++D + Sbjct: 1 MTTVLIVEDEKEIRRFVRLALENEDLKVFDADTLQRGL-IEAATRKPDLVILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + V L D + IA AGA+ +L KPF L +R + Sbjct: 60 G-TDFIRDLRQWSAIPVIVLSARSDEQDKIAALDAGADDYLTKPFGIGELLARVRVALRR 118 Query: 121 QKSKDENQF 129 + + Sbjct: 119 HSGQQPDAR 127 >gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 232 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 56/135 (41%), Gaps = 8/135 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M LLL++ + ++ + G+ V +T+ E + + + +++D + + Sbjct: 1 MKEKLLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQP-FDLVLVDWMLPEM 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++R +DV + + + + G + GA+ ++ KPF+ E L+ + Sbjct: 60 DGLTVCQNIRWE---SDVPILMMSARKEDADKVEGLQ-GADDYIAKPFSLEELKARVASH 115 Query: 118 PQMQKSKDENQFLDA 132 + + + ++ Sbjct: 116 LRRWRRYHKQDVIEE 130 >gi|288929070|ref|ZP_06422916.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] gi|288330054|gb|EFC68639.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] Length = 965 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + LF + V A++ EA EL+P+ ++ D M G+ Sbjct: 714 QRMLIVEDNADLAAYMGSLFTPQ-YAVCYASNGEEALARA-TELVPDIIITDRMMPGMDG 771 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR + + + + ++ ++ + G +AGA++++ KPFN E L + L Sbjct: 772 LEVCKQVRASDVMNHIPIVVVTGKITEQERLEGIKAGADAYITKPFNSEELITRVENLLD 831 Query: 120 MQKSKDE 126 + E Sbjct: 832 RHRKLRE 838 >gi|317047328|ref|YP_004114976.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316948945|gb|ADU68420.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 224 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G + EA + P+ +++D + Sbjct: 1 MTTILIVEDEKEIRRFVRLALEGEGLKIVEAEQLQRGL-IEAATRKPDLVILDLGLPDGD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 FI VRQ + + V L D + IA AGA+ +L KPF L +R Sbjct: 60 GNDFIREVRQ---WSSMPVIVLSARTDEQDKIAALDAGADDYLTKPFGIGELLARVRVAL 116 Query: 119 QMQKSKDENQFLD 131 + + + L Sbjct: 117 RRHQGSQPDPVLS 129 >gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 233 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E E + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLE-ENEIHLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12] gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12] Length = 220 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + G V +A E E P+ +++D + G+ Sbjct: 2 KILVLEDDKKIAHLLELELTHEGHEVRVVGDGYDALIEAE-EFKPDVVILDIMLPGLSGK 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R D+ + L D + + GA+ +++KPF+ E L ++ + + ++ Sbjct: 61 EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFNLGADDYVVKPFSIEELLARIQAVARRKE 120 Query: 123 SKDE 126 K+E Sbjct: 121 RKEE 124 >gi|189426613|ref|YP_001953790.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189422872|gb|ACD97270.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 235 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LV+ + + G+ V A E E + +++D + G+ F Sbjct: 7 RIMLVEDELHLARGICFNLEQDGYAVSHFDRGETALEALRVERC-DLIILDVMLPGMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ + V + L + ++G +GA+ +L KPFN ++ + + Sbjct: 66 QVCKAMRELD--SRVPILMLTARSEDVDRVSGLESGADDYLTKPFNLAEFLLRVKGMLRR 123 >gi|46581782|ref|YP_012590.1| transcriptional regulatory protein zraR [Desulfovibrio vulgaris str. Hildenborough] gi|46451205|gb|AAS97850.1| transcriptional regulatory protein zraR [Desulfovibrio vulgaris str. Hildenborough] gi|311232339|gb|ADP85193.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris RCH1] Length = 459 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD R + R + +G+ EA A E +E + +++D M + Sbjct: 5 TVLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKV-REKARDAVLMDVRMARMGGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + V V + E + R GA +L KP + + LR + + Sbjct: 64 EALRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALDHTR 123 Query: 123 SKDENQFLDA 132 EN+ L + Sbjct: 124 LVSENRELKS 133 >gi|114047569|ref|YP_738119.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113889011|gb|ABI43062.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 226 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 4/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + R G V A + E + + +P+ +++D M + Sbjct: 1 MSRILLVDDDPLFRVWLTDALKTQGHEVECAINGIEGLKRI-RSFMPDIIMLDLIMPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + L + E I GA+ FL KPF+ + L + L + Sbjct: 60 GFSLL---EARDCMTPIMMLSARDNEEDRIRCYELGADDFLTKPFSIKELLVRLHALERR 116 Query: 121 QKSKDENQF 129 S+ Q Sbjct: 117 LISRPPEQM 125 >gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3] gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3] Length = 223 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G++V +A E + + +V+D + + Sbjct: 2 RILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEG-HYLGDTEPYDAIVLDIGLPQMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120 Query: 123 SKDENQF 129 ++ Sbjct: 121 GHASSEL 127 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] gi|300076615|gb|ADJ66014.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVL 60 +L+VD R + + + V A ++ + +++D + Sbjct: 3 RKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGATFLAEFQRLADELSLVILDVMLPDTD 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A + + ++V V L D + G GA+ ++ KP++ L ++ + + Sbjct: 63 GF-ALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRR 121 >gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 226 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 1 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 59 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 Query: 121 Q 121 Sbjct: 118 H 118 >gi|218780745|ref|YP_002432063.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] gi|218762129|gb|ACL04595.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] Length = 368 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L VD ++ + G+ F+A S EA + +E P+ +++D M G Sbjct: 6 RVLAVDDEERNLRLMEAMLLPMGYEFFKAHSGEEALDIV-RETPPDVVLLDIMMPGVNGF 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + + + + + AGA+ FL KP ++ L+ + ++ Sbjct: 65 EVARRLKANEDTRIIPIIMVTALKEVDDRVKALDAGADDFLTKPVDKLELKARVANSLKI 124 Query: 121 QKSKDENQ 128 + D + Sbjct: 125 KAYNDHMR 132 >gi|17351926|gb|AAL38199.1|AF319443_1 putative response regulator RR23 [Listeria monocytogenes] Length = 225 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 1/111 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + K+ H GF V EA+ EA E + + VID M + Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 F + D+ V L + G G + ++ KPF E L Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELI 110 >gi|77359900|ref|YP_339475.1| response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874811|emb|CAI86032.1| putative response regulator [Pseudoalteromonas haloplanktis TAC125] Length = 549 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + R + + L G+ V A + A + + + +++D M + Sbjct: 1 MMHILVVDDQALNRILLQRLLTQEGYTVSLAYNGVAALKIL-SQTPIDIVLLDVVMPIMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++Q + + ++ D G + F+ KPF + L ++ Sbjct: 60 GFETAKIIKQRFNDIHLPIIFITALDDHASFERCLAVGGDDFIQKPFEKVILHAKIKAHC 119 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 120 RTRELSKK 127 >gi|197119775|ref|YP_002140202.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197089135|gb|ACH40406.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 453 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L++D +R+V + G+ V+ A + E LP ++ D M G Sbjct: 4 KILVIDDDSSLRRVLEYNLQQEGYDVYTAADGDAGLQLF-AERLPAVVITDLKMPGKSGF 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ +++ V L + + + GA +L KPFNRE L+ + + Q+ Sbjct: 63 EVLSAIKESS--PATVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKALQL 120 Query: 121 QKSKDENQFLDA 132 Q +EN+ L Sbjct: 121 QGLSEENRLLKE 132 >gi|222054470|ref|YP_002536832.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221563759|gb|ACM19731.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 456 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD H++R G+ VF A + +A +E P +++D + G+ Sbjct: 4 TRILVVDDEHLIRWSLEQNLKKQGYEVFTAGNGEDALRLV-REEQPELVLLDIQLPGIGG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ V L E + R GA ++ KPFN + L +++ + Sbjct: 63 LEVLEKVKEFDDEIVVIMLTAHGGLETAVNTMRMGAYDYINKPFNLDELSIVIKKALETS 122 Query: 122 KSKDENQFLDA 132 + E L + Sbjct: 123 DLRREVVQLRS 133 >gi|15896015|ref|NP_349364.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025797|gb|AAK80704.1|AE007774_1 Response regulator (CheY receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510169|gb|ADZ21805.1| Response regulator (CheY receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+++VD + + + GF V+ A + +A ++L PN +++D + + Sbjct: 10 SIMVVDDEEHIVEFLKMGLEAEGFTVYTAFNGNDAV-IYSRKLNPNLIILDVMLPYMNGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +++ +++ + L + + + + G GA+ +++KPF+ + L + + Sbjct: 69 EVCSLIKK---ASNIPIIMLTAKDEIDDKVLGLNLGADDYMIKPFSFKELLARINARLRN 125 Query: 121 QKSKDENQ 128 S+ N+ Sbjct: 126 SFSETLNK 133 >gi|313115387|ref|ZP_07800858.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622301|gb|EFQ05785.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 233 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M+S+L++D + + + A E EK + +++D M + Sbjct: 1 MNSVLIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDM 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +V V L + D E ++G R GA+ +L KPF L + L + Sbjct: 61 NGF-QVLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|237722197|ref|ZP_04552678.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448007|gb|EEO53798.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1409 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R R + ++ + V EA + EA + ++++ D M + Sbjct: 1157 TILVVEDNVDMRGYIRSILHEH-YNVLEAANGEEALHILNSNPV-DFIISDLMMPVMDGI 1214 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E + R G + +LLKPF+ L ++ + + Sbjct: 1215 ELSRRVKDAFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILEN 1274 Query: 121 QKSKDE 126 +K Sbjct: 1275 RKRYQR 1280 >gi|219683981|ref|YP_002470364.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|219621631|gb|ACL29788.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] Length = 239 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + + G+ A A + +K L P+ +++D + + Sbjct: 12 RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADK-LHPDLIIMDLMLPVMDG 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R + V L D ++ G GA+ ++ KPF+ L R L + Sbjct: 71 IEATKRIEAQHP-IPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARERALLRR 128 >gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 233 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|160894157|ref|ZP_02074935.1| hypothetical protein CLOL250_01711 [Clostridium sp. L2-50] gi|156864190|gb|EDO57621.1| hypothetical protein CLOL250_01711 [Clostridium sp. L2-50] Length = 233 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + + A + A P +++D + Sbjct: 1 MNKPLILVVEDDPSVRNLITTTLKTNDYRYVVAPNGSAAIMEATSHN-PEIILLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I ++ + ++V + + + I AGA+ +L KPF+ E L +R Sbjct: 60 MDG-IQVIQTVRSWSNVPIIVISARSEDNDKIKALDAGADDYLTKPFSVEELLARLRVTQ 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] gi|133737759|emb|CAL60804.1| Heavy metal response transcriptional activator protein [Herminiimonas arsenicoxydans] Length = 231 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+++ + + GF V A + + E + + +V+D + Sbjct: 2 RILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAV-DLIVLDMMLPLLSGW 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R + V L + E + G GA+ +L+KPF L +R L + Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 121 QKSKDEN 127 +DE+ Sbjct: 121 SPVRDED 127 >gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] Length = 1346 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 4/116 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL + + R + L G V+ A+ EA + + +++D M + Sbjct: 1208 RRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAY-DAILMDVQMPELDG 1266 Query: 62 F--IAHVR-QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +R +MP +V L V + AG ++FL KP ++ L A+ Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322 Score = 63.7 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 26/132 (19%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V + R + R +G S EA + + + +IDE + + Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133 Query: 62 FIAHVRQMPLGTDVFVYY----------LLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 +R+ GT++ V L L KP + +L Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR--------------LHKPIKQSSLH 1179 Query: 112 FAMRELPQMQKS 123 + L +++ Sbjct: 1180 DTLTALLTGREN 1191 >gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568209|ref|ZP_04845620.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] gi|251842282|gb|EES70362.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1472 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1216 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1273 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1274 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLGE 1333 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1334 RKLFRERIRQQMENQ 1348 >gi|329120744|ref|ZP_08249406.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis ATCC BAA-1200] gi|327460541|gb|EGF06877.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis ATCC BAA-1200] Length = 225 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD ++ ++ G V + +V+D M + Sbjct: 1 MSRVLLVDDDAVLTELLTEYLTAEGLEVRSVPDGEAGVHEILSGQY-DVVVLDSMMPKMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + + L + D I G GA+ ++ KP L + + + Sbjct: 60 GL-DVLKTVRTQSSIPIIMLTAKGDDIDRIIGLEMGADDYVPKPSTPRELLARINAILRR 118 Query: 121 -QKSKDENQFLDAI 133 Q + D+N ++I Sbjct: 119 AQHTHDQNNISNSI 132 >gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type DNA-binding domain) [Paenibacillus polymyxa SC2] gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Paenibacillus polymyxa SC2] Length = 230 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + K+ + GF A S EA KE +++++D M G+ Sbjct: 3 KKILVVDDDKDIVKLITKSLSYEGFETIPAYSGKEALCAL-KENHIDFIILDIMMPGMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + +L I G GA+ ++ KPF+ + L +R + Sbjct: 62 LDVCRSIRNS---YNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFR 118 Query: 120 M 120 Sbjct: 119 K 119 >gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis ZC1] gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis ZC1] Length = 929 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + G + A E E + + +++D M + Sbjct: 790 KNILIVDDDNRNIYALKTALEKRGMHILVAKDGLECLEVLQANPDIDLVLMDIMMPNMDG 849 Query: 62 FIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + A +RQ D+ + L + +AGA+ ++ KP N + L +R Sbjct: 850 YEAMTIIRQQMKRIDLPIIALTAKAMKNDRDKSLQAGASDYISKPLNLDQLISVLRVWL 908 >gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 227 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL++ + ++ R F + S + E E + +++D + Sbjct: 1 MKKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEH-FDLVILDIMLPKVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEVCKQIRA---AKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 ARYERLSDKQ 126 >gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 367 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 6/118 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + + + D GF++ A EA KEL P+ +++D + G E Sbjct: 150 ILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLA-KELNPSIIILDIMLPGINGYE 208 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +++ + + L + D + + G GA+ +++KPF+ + L + + Sbjct: 209 VCSEIKK---WVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLR 263 >gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 228 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ + EA EA E E + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFE-EYEVHLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 MESR 120 >gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 230 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ G+ A + E + V+D + G+ Sbjct: 1 MK-ILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESC-DLAVVDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G + V L + I + G + +L+KPF+ L ++ L + Sbjct: 59 GFTLIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRR 118 Query: 121 QKSKDE 126 + E Sbjct: 119 ASATAE 124 >gi|126730082|ref|ZP_01745894.1| response regulator [Sagittula stellata E-37] gi|126709462|gb|EBA08516.1| response regulator [Sagittula stellata E-37] Length = 421 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S + K+ + +GF V ATS EA C E P+ ++ D M G+ Sbjct: 17 RRVLVVDDSQLQLKIVGLVLARWGFEVLTATSGPEALRIC-AETPPDLVLSDWMMPGMDG 75 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 R + + L + + + G AGA+ FL KP N LR + Sbjct: 76 LELCRRFRALDREKYGYFILLTSKSEKGDVAQGLDAGADDFLTKPVNNHELRARINAGER 135 Query: 117 LPQMQKSKD-ENQFLD 131 L MQ+ +N+ L Sbjct: 136 LLAMQRELSVKNRHLS 151 >gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 248 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A +A + + +++D M Sbjct: 20 KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMI-STYEVDLMILDIMMPKRNG 78 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 79 LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 135 Query: 120 M 120 Sbjct: 136 R 136 >gi|320354178|ref|YP_004195517.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122680|gb|ADW18226.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 465 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL++D +R + + + G+ V A + + ++ D M G+ Sbjct: 5 QRLLIIDDEENMRHMLTSVLSRLGYQVEVAAHGQAGLDALATGD-FDVVLCDIRMPGMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + G + + + +A R GA ++ KPF E + +R+ + + Sbjct: 64 LEFLRQAIAAGISATIIMMSAFGSVDTALAAMRLGAYDYISKPFKAEEIELTLRKAEERE 123 Query: 122 KSKDENQFL 130 + N+ L Sbjct: 124 GLRRANREL 132 >gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5] gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5] Length = 228 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + +V + G+ V + E E + + +++D + G+ Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGH-SLVLLDVMLPGLSGLE 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R V L + G GAN ++ KPF E L +R + + Sbjct: 65 VLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 124 KDEN 127 K E+ Sbjct: 125 KTED 128 >gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] Length = 1346 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 4/116 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL + + R + L G V+ A+ EA + + +++D M + Sbjct: 1208 RRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAY-DAILMDVQMPELDG 1266 Query: 62 F--IAHVR-QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +R +MP +V L V + AG ++FL KP ++ L A+ Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322 Score = 62.9 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 26/132 (19%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V + R + R +G S EA + + + +IDE + + Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133 Query: 62 FIAHVRQMPLGTDVFVYY----------LLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 +R+ GT++ V L L KP + L Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR--------------LHKPIKQSNLH 1179 Query: 112 FAMRELPQMQKS 123 + L +++ Sbjct: 1180 DTLTALLTGREN 1191 >gi|291451644|ref|ZP_06591034.1| two-component system response regulator [Streptomyces albus J1074] gi|291354593|gb|EFE81495.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R G V A + E +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLL-REQRPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 RRGERES 123 >gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1702 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 5/119 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LL + + + +++ L FG V A + +A + + +++D M + F Sbjct: 1472 ILLAEDNVVNQRLAIRLLERFGHKVTLAENGLQAV-AASEMKDFDLILMDVQMPHMGGFE 1530 Query: 64 A----HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R+ + + + + AG + +L KP N + LR + + Sbjct: 1531 ATSTIRIREKVMNKHTPIIAMTAHALQKDKEKCLNAGMDDYLSKPINPDQLRAVIEKYL 1589 Score = 67.5 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 14/121 (11%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEGVL 60 L++D + R+V + +++G S A K+ Y+ +D + G Sbjct: 1329 LIIDDNKSTRRVLHQMLSEYGVSADTTDSQDSAFHMLREAAMKKQPYEYIFMDAQLNGKD 1388 Query: 61 EFI--AHVRQMPLGTDVFVYYL---LM-EVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 F+ ++Q P + L D E + + +L KP + + + Sbjct: 1389 GFLVAEAIKQDPSFGQASIIMLICGSGQRGDPENRSSVI----SGYLSKPVSPVEMLEVI 1444 Query: 115 R 115 + Sbjct: 1445 Q 1445 >gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 236 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 73 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131 >gi|255598170|ref|XP_002536943.1| sensory transduction histidine kinase, putative [Ricinus communis] gi|223518029|gb|EEF25440.1| sensory transduction histidine kinase, putative [Ricinus communis] Length = 262 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +++ L GF V A + + P+ +++D M + F Sbjct: 15 RILIVDDTPEQQRILLELLRSSGFNVTLAFDGHQGYQRALSSK-PDLILLDVRMARMDGF 73 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ D+ V +L ++ I G + G ++ KPF E + + Sbjct: 74 ATCRLLKADAATHDIPVIFLTAAGAPDERINGLKMGGVDYISKPFVPEEVIARINIHL 131 >gi|253699010|ref|YP_003020199.1| response regulator receiver protein [Geobacter sp. M21] gi|251773860|gb|ACT16441.1| response regulator receiver protein [Geobacter sp. M21] Length = 204 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 4/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + + + + V A S EA E LP+ +++D M + Sbjct: 4 KKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEAL-LALAENLPDLILLDVMMPEMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ D+ V ++ D G AGA +L KP N L + + Sbjct: 62 LEVCRILKDDSRYRDIPVIFITALSDEVDESRGFEAGAVDYLSKPVNPVILSHRVAVHLE 121 Query: 120 MQKSKDENQF 129 +Q K+ Sbjct: 122 LQSQKEALAR 131 >gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + G V AT E L +++++D ++ + F Sbjct: 2 RILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELA-ASLAFDFILLDVNLPDMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G+ + + + + I G + GA+ +L KPF E L M + + Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRR 118 >gi|78223839|ref|YP_385586.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78195094|gb|ABB32861.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 1216 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + +V EA + EA E E + +++D M + Sbjct: 1095 KKVLIVDDDMRNIFSLSSVLAEKKMIVLEAENGREALERLNGEPGIDVVLMDIMMPEMDG 1154 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ P + + L + +AGA+ ++ KP + + L +R Sbjct: 1155 FAATRAIRKDPRFARLPIIALTAKAMKGDRDECLKAGASDYIQKPVDADKLLSLLRVWL 1213 Score = 88.3 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 17/145 (11%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL- 60 S+L+++ + + D GF A + LP+ +V+D + + Sbjct: 827 RSILIIEDDLSFAAILMDMVRDRGFPAMVAGDGESGIALAD-HYLPSAIVLDVMLPHIDG 885 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET---------- 109 + ++ + V++L E GA F+ KP N Sbjct: 886 WGVMKCLKDSLRTRHIPVHFLTCL---EDRQKALTMGAIGFVTKPVNSAQLDEVFSTIEH 942 Query: 110 -LRFAMRELPQMQKSKDENQFLDAI 133 L ++R+L ++ ++E + ++A+ Sbjct: 943 SLAKSVRKLLIVEDDRNEAKSMEAL 967 Score = 60.2 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 4/93 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+V+ K L + + EA E + +V+D + + Sbjct: 949 RKLLIVEDDRNEAKSMEALLGVRDVAITVTATGSEAMGLLAVEP-FDCIVLDLGLSDMSG 1007 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEV-DFEKMIA 91 F + ++ + + V E Sbjct: 1008 FEVLEKIQSLDESRRIPVIIHSGRDLSREDEQR 1040 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + +L + + V AT A + C + + +++D + + Sbjct: 1 MK-ILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWD-CIQAYDYDLILLDVVLPKLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R L + + + + G AGA+ +L+KPF+ E L +R L Sbjct: 59 GISLCRKIRSNNL--QMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD ++ + + L + +G + + E E + P+ L++D + Sbjct: 396 TKILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEA-VAPDMLILDVELPYING 454 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR +++ + +L + D E + GA+ F+ KP L + + Sbjct: 455 IELCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRIVNRLE 514 Query: 120 MQKSKDE 126 K + Sbjct: 515 RMKLRQR 521 >gi|332530116|ref|ZP_08406066.1| multi-sensor signal transduction histidine kinase [Hylemonella gracilis ATCC 19624] gi|332040589|gb|EGI76965.1| multi-sensor signal transduction histidine kinase [Hylemonella gracilis ATCC 19624] Length = 487 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D S +R + L G+ V A + + + E P+ +++D + G+ Sbjct: 11 RILVIDDSPEIRLLATVLLEREGYEVSSADNGEDGVKRA-TETAPDLILLDVMLPGMDGY 69 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q D+ V ++ + D G AG ++ KP + L +R + Sbjct: 70 EVCRWLKQSEALRDIPVIFMSAQDDVPAQTQGFTAGGADYVTKPLSVPVLLARVRTHVAL 129 Query: 121 QKSKDENQ 128 + + Sbjct: 130 HAQRRSLE 137 >gi|330821548|ref|YP_004350410.1| two component transcriptional regulator [Burkholderia gladioli BSR3] gi|327373543|gb|AEA64898.1| two component transcriptional regulator [Burkholderia gladioli BSR3] Length = 239 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+VD +R++ + + G+ V A + + + + +V+D ++G Sbjct: 1 MDHILVVDDDPHIRQLLQDYLREMGYQVQVAADGAQ-MKQILRRASIDLVVLDLMLDGED 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V + L I G GA+ +L KPF+ L ++ + + Sbjct: 60 GLDLT-RDLRREQGVPIIILSARGGLLDRILGLEMGADDYLPKPFDPRELVAKIKVVLRR 118 Query: 121 QKS 123 ++ Sbjct: 119 TRA 121 >gi|317486963|ref|ZP_07945773.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921838|gb|EFV43114.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 358 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ L + V AT+ A E P+ +++D M + Sbjct: 2 VLVVDDTIANIRILDDLLRGE-YTVRVATNGATALRLALSEPRPDIVLLDIMMPDMDGYE 60 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ PL +++ V ++ + E G GA F+ KPF +R + ++ Sbjct: 61 VCRRLKSDPLTSNIAVVFITAMGNEEHEAKGLDLGAVDFIAKPFQPRLVRARVSNHVALK 120 Query: 122 KSKDENQFL 130 K DE L Sbjct: 121 KYNDELNSL 129 >gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 837 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 6/125 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ R V R + FG+ V A A E + +++D M + Sbjct: 710 RRILLVEDEETNRDVARRMLEKFGWDVTVAADGQAAVEQVFANH-FDCILMDIQMPVMDG 768 Query: 62 F--IAHVRQ---MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R + + + + G + ++ KPF LR + + Sbjct: 769 VAATRLIRTAVPLGEKRAIPIIAMTAYAMSGDREKFLACGMDEYISKPFEHTDLRAVVEK 828 Query: 117 LPQMQ 121 + Sbjct: 829 ALARR 833 >gi|262173236|ref|ZP_06040913.1| chemotaxis regulator CheY [Vibrio mimicus MB-451] gi|261890594|gb|EEY36581.1| chemotaxis regulator CheY [Vibrio mimicus MB-451] Length = 119 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V AT +A +K + ++ D +M + Sbjct: 1 MARVLAVDDSISIRQMVSHTLQDAGYEVETATDGRDALTKAQKS-RFDVIISDVNMPVMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 EF+ VR + L E EK G GA +L+KPFN ETL ++ + Sbjct: 60 GFEFVKAVRLQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119 >gi|260554524|ref|ZP_05826745.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|260411066|gb|EEX04363.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] Length = 228 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ + E +++ + L++D + + Sbjct: 7 RILIIEDEMKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + V +L + + G GA+ +L KPF+ L ++ L + Sbjct: 66 SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 122 Query: 121 QKSKDENQF 129 Q+ EN+ Sbjct: 123 QQYLQENEL 131 >gi|239501396|ref|ZP_04660706.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB900] Length = 223 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ + E +++ + L++D + + Sbjct: 2 RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + V +L + + G GA+ +L KPF+ L ++ L + Sbjct: 61 SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117 Query: 121 QKSKDENQF 129 Q+ EN+ Sbjct: 118 QQYLQENEL 126 >gi|255037400|ref|YP_003088021.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254950156|gb|ACT94856.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 228 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLLV+ + + + D GF AT + + + + + D M Sbjct: 1 MPNLLLVEDDANLGMLLQEYLTDKGFPTDLATDGQKGWQHFV-DKQYDLCIFDVMMPKKD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F G DV + +L + E + G R GA+ ++ KPF+RE L ++ + + Sbjct: 60 GFSLAKEVRMSGRDVPIIFLTAKSMKEDTMQGFRVGADDYVTKPFDREELLMRIQAILRR 119 Query: 121 QKSKDENQ 128 + + Q Sbjct: 120 YTRQTDVQ 127 >gi|257059911|ref|YP_003137799.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] gi|256590077|gb|ACV00964.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] Length = 481 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ K+ ++ D G+ V +A A P+ +++D + + Sbjct: 11 ILVVEDQLDNLKLLSNILWDEGYQVRQAIDGEMAL-IAIDTKYPDLILLDIKIPRLDGYQ 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ V +L + + + GA ++ KP+ + + ++ Sbjct: 70 LCQTLKAKETTANIPVIFLSAFDELWEKVKAFEMGAVDYITKPYQAPEVLARVENQVKLS 129 Query: 122 KSKDENQ 128 + + + Sbjct: 130 LLQKQLK 136 >gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201] gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201] Length = 226 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + +L GF V A ++ + +++D + G Sbjct: 1 MTQILMVEDEESLSDPLAYLLGREGFDVTVVADGIRAVAEFDRAGA-DLVLLDLMLPGQS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +RQ ++V + L + + G GA+ ++ KP++ L +R + Sbjct: 60 GTEVCKQIRQR---SNVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVL 116 Query: 119 QMQKSKDEN 127 + + +E Sbjct: 117 RRRAEPEEL 125 >gi|78224120|ref|YP_385867.1| two component, sigma54 specific, Fis family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195375|gb|ABB33142.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 470 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD ++R+ R + GF V + S A E ++E + ++ D M G+ +E Sbjct: 6 VLVVDDEAVIREGLRRILEKEGFHVETSASGQIALERMQEEN-FSLVITDLKMPGMSGME 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ + +V V + + + + GA ++ KPF E + +R+ + Sbjct: 65 VLKAIKVLQ--PEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPEQITEKVRKALDQR 122 Query: 122 KSKDENQFLD 131 EN FL Sbjct: 123 AVLIENIFLK 132 >gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 224 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + G+ V + E E + +++D + G Sbjct: 1 MQHILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAAL-ETNYDLILLDLMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + + L + G +GA+ +L KPF E L MR + Sbjct: 60 GIEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116 Query: 119 QMQKSKDENQFLDAI 133 + ++ + EN+ + ++ Sbjct: 117 RREE-QIENKHVSSL 130 >gi|313900856|ref|ZP_07834346.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2] gi|312954276|gb|EFR35954.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2] Length = 226 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+VD +R + R G + EA +A E C++ + +++D M + Sbjct: 1 MSKLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAEY-DLIIMDIMMPNLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + V+++ V L + I G G + +++KPF+ + L + + + Sbjct: 60 GF-SAVKEIRKDVQTPVIMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVSAILKR 118 Query: 121 QK 122 Sbjct: 119 YH 120 >gi|308070884|ref|YP_003872489.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305860163|gb|ADM71951.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 226 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD++L+V +R V + G+ V EA + EA + + + +++D + + Sbjct: 1 MDTILVVGDDTEIRDVIHVYLRNEGYFVIEAANGMEALDLI-RSISFELVILDSMLPQMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + ++ + L + + I G GA+ +++KPFN L ++ Q Sbjct: 60 GINACIKIREI-SNTPIILLSAKEEDIDKIVGLTPGADDYMIKPFNPLELLARVKAHLQR 118 Query: 121 QKSKDENQF 129 Q + +F Sbjct: 119 QSLIGKEEF 127 >gi|291568744|dbj|BAI91016.1| two-component response regulator (OmpR subfamily) [Arthrospira platensis NIES-39] Length = 253 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC--EAREFCEKELLPNYLVIDESMEG 58 M +L++D + ++ G+ V A +A + L + Sbjct: 1 MPRILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQAL-ALQLLPDLIILDLMLPKVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ ++ V L + + G AGA+ +L KPF E + +R L Sbjct: 60 GFTVCQRLRRDERTGEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 230 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 7/135 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + GF A S + + + + L++D + Sbjct: 1 MSRILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQN-FDLLILDLGLPDRD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + +R + + L D +AG AGA+ ++ KPF L +R Sbjct: 60 GFQILKELRGQGET--LPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARL 117 Query: 119 QMQ--KSKDENQFLD 131 + Q K D+N+ L Sbjct: 118 RNQTGKPADDNKTLS 132 >gi|239907600|ref|YP_002954341.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239797466|dbj|BAH76455.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 374 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 13/143 (9%) Query: 1 MDS-----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55 M + +LLVD + + V AT A KE P+ +++D Sbjct: 1 MKTLAECLILLVDDTETNLDILVDAL-GEDHEVAVATDGPTALALA-KEQTPDLILLDIM 58 Query: 56 MEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 M G+ + P + V +L D G G ++ KPF ++ Sbjct: 59 MPGMDGYEVCRRLMADPATAETPVIFLTALTDVADKTRGFAVGGVDYVTKPFEPAEIKAR 118 Query: 114 MREL----PQMQKSKDENQFLDA 132 R Q+ +N+ L+ Sbjct: 119 ARTHLSLRLARQELARQNEILEE 141 >gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 226 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] Length = 227 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V + G+ A + EA E + +++D + + Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFL-NSSWDLILLDVMLPNISGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L ++G GA+ ++ KPF E L +R ++ Sbjct: 63 EVLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISH 122 Query: 123 SKDENQ 128 + E + Sbjct: 123 AIKEEE 128 >gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293] gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293] Length = 233 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|218549739|ref|YP_002383530.1| DNA-binding transcriptional activator KdpE [Escherichia fergusonii ATCC 35469] gi|218357280|emb|CAQ89915.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia fergusonii ATCC 35469] Length = 225 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|157373042|ref|YP_001481031.1| DNA-binding transcriptional regulator CpxR [Serratia proteamaculans 568] gi|270265194|ref|ZP_06193456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|157324806|gb|ABV43903.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] gi|270040828|gb|EFA13930.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 232 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF + A +A + + L I + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFTIVVAYDGEQALSLLDSSIDLLLLDIMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQFLD 131 ++ Q +D Sbjct: 118 SNWSEQQQNVD 128 >gi|73540096|ref|YP_294616.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Ralstonia eutropha JMP134] gi|72117509|gb|AAZ59772.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Ralstonia eutropha JMP134] Length = 237 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + ++++D +R + + D GF V + + + + LV+D ME Sbjct: 5 NRIIVLDDEAELRNMLQRFLTDHGFRVRAVADGKQ-LDRHLQREPHDLLVLDLMMEPEDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D +AG GA+ +L KPF + L +R L + Q Sbjct: 64 LTICRRLRAEGHTLPILMLTAKGDPMDRVAGLETGADDYLAKPFVPDELVARIRALLRRQ 123 Query: 122 KSKD 125 K Sbjct: 124 KMAA 127 >gi|83311728|ref|YP_421992.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82946569|dbj|BAE51433.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 278 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +VD +R + R + +G+ V S AR+ ++ P+ ++D + + Sbjct: 45 KRIYVVDDEPDIRALLRQVLEGYGYHVTPLASGALARQAIRRDP-PDLCIVDLGLPDMDG 103 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR++ V L + G GA+ +++KPF L + + + + Sbjct: 104 LT-LVRELWEDVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRR 162 Query: 122 KSKD 125 Sbjct: 163 DQLA 166 >gi|295394889|ref|ZP_06805102.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972222|gb|EFG48084.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 266 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 52/119 (43%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 ++LV+ ++R+ + FG+ V + EF + + +++D + + Sbjct: 3 IVLVEDDEVIRETTQLALERFGYTVTGFEDGRDGYEFIASQGA-DVVLLDLMLPTMNGAS 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + + + ++ AGA+ +L KPF+ + L +R + + Sbjct: 62 ITRAIRER---SNVPIIVISARSEPIDIVQALEAGADDYLTKPFDMQVLNARIRTVVRR 117 >gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1] gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1] Length = 226 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + V ++ + + +++D + + F Sbjct: 2 RILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIY-DLIILDIMLPKLNGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +L + + + G GA+ +L KPF E L +R L + Q Sbjct: 61 DILKMCRQDKIKTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRRQ 119 >gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1778 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 3/117 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ + + G+ + A +A + + E PN +++D M G+ Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSES-PNLILMDIQMPGIDGLE 1719 Query: 64 A--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +RQ+ + V + L AGAN ++ KP + L ++E+ Sbjct: 1720 AINRIRQITTMSQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1776 >gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 226 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + + + V S +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATY-DLIVLDIMIPGIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L] gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 233 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + ++ R F V S + +E + +++D + + Sbjct: 6 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMNG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 65 FEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 121 Query: 120 MQK 122 + Sbjct: 122 RYE 124 >gi|319426431|gb|ADV54505.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 226 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 4/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + R G V A + + + +++D M + Sbjct: 1 MSKILLVDDDPLFRTWLADALIAHGHEVECAANGLDGLNRIRAG-FADVIMLDLVMPQMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ V L + I G GA+ FL KPF+ + L + L + Sbjct: 60 GF-EVLKARE--CSTPVMMLSARDSEDDRIMGYELGADDFLSKPFSIKELIVRLGALERR 116 Query: 121 QKSKDENQ 128 S Q Sbjct: 117 LHSHRIMQ 124 >gi|262382621|ref|ZP_06075758.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262295499|gb|EEY83430.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 622 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D S +R RH+F + V EA + E E E P++++ D M Sbjct: 368 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 425 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +P V V L +V+ E +IAG GA+ ++ KPF+ E LR + L + Sbjct: 426 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 485 Query: 120 MQKSKDENQF 129 + DE + Sbjct: 486 RR---DEMRR 492 >gi|226309996|ref|YP_002769890.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092944|dbj|BAH41386.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ +R R G+ V EA + EA + +++ ++D + G+ F Sbjct: 2 KVLLLEDEKSIRDFVRINLKREGYEVIEAGTGEEALDLADQQTDIVIAILDVMLPGIDGF 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ- 121 + + + L + + G GA+ ++ KPF+ L ++ L + Sbjct: 62 EVCGQLRKKYPRLGIIMLTAKSQELDKVMGLEFGADDYVSKPFSPAELLARVKALHRRLT 121 Query: 122 ---KSKDENQ 128 +++D+N+ Sbjct: 122 PIPEAEDKNE 131 >gi|89889387|ref|ZP_01200898.1| two component system response regulator [Flavobacteria bacterium BBFL7] gi|89517660|gb|EAS20316.1| two component system response regulator [Flavobacteria bacterium BBFL7] Length = 229 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL + + + + G+ V + EA + E++ P+ V+D M + F Sbjct: 7 NILLAEDEPALGLIVKESLETRGYEVNHCHNGIEAYQSFEQQT-PDIAVLDVMMPELDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + + + +L + E ++ G G N +L KPF+ E L ++ L Q+ Sbjct: 66 SLAKKIRTVNEQMPIIFLTAKSQTEDVLEGFHVGGNDYLKKPFSMEELIVRIKNLLSRQQ 125 Query: 123 SKD 125 ++ Sbjct: 126 TQQ 128 >gi|50085580|ref|YP_047090.1| putative two-component response regulator protein [Acinetobacter sp. ADP1] gi|49531556|emb|CAG69268.1| putative two-component response regulator protein [Acinetobacter sp. ADP1] Length = 320 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V T A E + LP+ +++D +M + F Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P+ + V ++ + E ++ G + G ++ KP N E + ++ Sbjct: 78 SCLQLKASPITQLIPVIFMTGLSETEHIVKGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 Query: 122 K-SKDENQFLDA 132 K + + Q +DA Sbjct: 138 KLLQQQKQVIDA 149 >gi|153212561|ref|ZP_01948308.1| transcriptional regulator CpxR [Vibrio cholerae 1587] gi|229521757|ref|ZP_04411175.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae TM 11079-80] gi|254225418|ref|ZP_04919029.1| transcriptional regulator CpxR [Vibrio cholerae V51] gi|297581527|ref|ZP_06943450.1| transcriptional regulator CpxR [Vibrio cholerae RC385] gi|124116432|gb|EAY35252.1| transcriptional regulator CpxR [Vibrio cholerae 1587] gi|125622052|gb|EAZ50375.1| transcriptional regulator CpxR [Vibrio cholerae V51] gi|229341351|gb|EEO06355.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae TM 11079-80] gi|297534365|gb|EFH73203.1| transcriptional regulator CpxR [Vibrio cholerae RC385] Length = 228 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF + +A E + +++D M + Sbjct: 1 MAHILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKS 123 ++ Sbjct: 118 TQN 120 >gi|320353940|ref|YP_004195279.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122442|gb|ADW17988.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 462 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 1/132 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + V L D G+ VF A S L + ++ D M G+ Sbjct: 1 MHTILVVDDEPNYQIVLSELLKDEGYEVFTADSGLAGLPIVYSTDL-DLVLSDMKMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ V + + EK + R GA ++L KPF+ L ++ + + Sbjct: 60 GIEFLGKIKEYNRELPVILITAYAEVEKAVEAMRLGAFTYLAKPFSNTQLLASVTKAIEH 119 Query: 121 QKSKDENQFLDA 132 E + L A Sbjct: 120 YGLIREIRRLRA 131 >gi|317483795|ref|ZP_07942735.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924898|gb|EFV46044.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 236 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD +R++ + V A E + + +++D + G Sbjct: 5 TRLLVVDDDADIRELLSAYLARYDMTVETAADGAGLFEKLD-HAHFDLIILDIMLPGEDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + V +L + G GA+ +++KPF+ L +R + + Sbjct: 64 LSLCRRLR---GTSAIPVIFLTSLDSSTDRVVGLELGADDYVVKPFDPRELLARIRTVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|312886856|ref|ZP_07746462.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300683|gb|EFQ77746.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1463 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +LLV+ ++ +R + + V A + E + LLP+ ++ D M + Sbjct: 1210 VLLVEDNNDLRMFLAAQLSSL-YRVEVAENGQEGLQKAI-NLLPDLVLSDVMMPKMDGIQ 1267 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ L + + V L + E I G + GA+S++ KPF+ L ++ L + + Sbjct: 1268 MLDELKNNILTSHIPVVLLSAKFSIENQIEGLKYGADSYITKPFDNGFLLASIENLIRQR 1327 Query: 122 K 122 K Sbjct: 1328 K 1328 >gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 245 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + GF+V AT A + E P+ L++D + G Sbjct: 19 RRVLVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEA-WQPDLLILDIMLPGFDG 77 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE V+ V V L D M+ G GA+ ++ KPF+ L + L + Sbjct: 78 LEVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLR 134 Query: 120 MQKSKD 125 + Sbjct: 135 RVERAA 140 >gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 234 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ F V+ A S EA +E+ P+ ++D M G+ F Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIA-REVNPDAYILDVMMPGMDGF 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D V YL + ++ I G GA+ ++ KPF+ E + +R + + Sbjct: 67 ELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGG 126 Query: 123 SKDE 126 + +E Sbjct: 127 AAEE 130 >gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 236 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATY-DLIVLDIMIPGINGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 131 >gi|227327463|ref|ZP_03831487.1| two-component system regulatory protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 229 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ V G+ V A+ P+ +++D + + Sbjct: 4 KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQRGLHMALTSK-PDLILLDVMLPKMNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +RQ +++ V + D + I R GA+ +++KP+N + + ++ + + Sbjct: 63 SEVLSALRQR---SNIPVIMVTAIGDDPERIGALRYGADDYVVKPYNPQEVVARVQAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R G V A + + + +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLL-REQRPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVL 116 Query: 119 QMQKSKDEN 127 + + + + Sbjct: 117 RRGERESTD 125 >gi|171912783|ref|ZP_02928253.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Verrucomicrobium spinosum DSM 4136] Length = 488 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + + ++ G+ + ++ +A + K P+ +++D M G Sbjct: 4 QRILIADDTPASLSLISNVLEPRGYEILAVSNGRDALQLAPKAK-PDLILLDVMMPGQDG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ ++ V ++ + E ++ G + GA ++ KPF + + + + Sbjct: 63 FMVCRELKAADETRNIPVIFVTSRNEIESVVRGFQVGAVDYIYKPFQAQEVVTRVATHLK 122 Query: 120 M----QKSKDENQFLD 131 + ++ + N L+ Sbjct: 123 LSLLTRELQQRNDELE 138 >gi|170744479|ref|YP_001773134.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168198753|gb|ACA20700.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1937 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 2/122 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD G V A + + + + +++D M + + Sbjct: 1795 RILLVDDDVRNIFSLTSALELHGLDVLFAENGRDGIALLKANPSIDAMLVDIMMPEMDGY 1854 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + + AGA+ ++ KP + + L +R + Sbjct: 1855 ETMREIRRDERFRALPLIAVTAKAMKGDREKCMEAGASDYVSKPVDLDQLLAVLRVQLEQ 1914 Query: 121 QK 122 ++ Sbjct: 1915 RR 1916 Score = 97.2 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 6/115 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + V L + GF A A + P+ + +D + + Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAAALALAHR-YKPHAITLDIGLPDMDGWA 1588 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + H++ + ++ + + + G RAGA FL KP +RE L A+ Sbjct: 1589 LLDHLKNDVRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVDREGLLRALER 1640 Score = 56.0 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 3/104 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 SLLLV+ R L ++ VF ++ + ++D + G Sbjct: 1650 RSLLLVEDDDNQRASITALLSEEDVKVFSVSTAAA-ALEAVAGGRFDCAIVDLGLPDLGG 1708 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103 E I +R P G ++ + E + A++ +LK Sbjct: 1709 SELIEQIRATPDGEELPIIVYTGRELTEAEEQQLKQTASTIILK 1752 >gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42] gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42] Length = 239 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 5/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + + ++ G+ V A+ E + P+ +V+D + Sbjct: 3 KKILVVDDEQSIVTLLQYNLERSGYDVITASDGEE-ALELAENENPDLIVLDVMLPKVDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +RQ + V + L + + + G GA+ ++ KPF+ + ++ + + Sbjct: 62 IDVCKQLRQQKMM--VPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILR 119 Query: 120 MQKSKDENQ 128 +Q Sbjct: 120 RADISSLSQ 128 >gi|170724537|ref|YP_001758563.1| response regulator receiver protein [Shewanella woodyi ATCC 51908] gi|169809884|gb|ACA84468.1| response regulator receiver protein [Shewanella woodyi ATCC 51908] Length = 120 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ GF V EA EA + + + ++ D +M + Sbjct: 1 MKKILAVDDSASMRQMVGFTLKTAGFDVTEACDGDEALKAA-QGGEFDLVISDVNMPVMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++R +P + L E +K G AGA +++KPFN + L +R++ Sbjct: 60 GLTLIRNLRTLPAYKFTPLLMLTTESGVDKKHEGRSAGATGWIVKPFNPDQLLATVRKVL 119 >gi|332307092|ref|YP_004434943.1| response regulator receiver protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174421|gb|AEE23675.1| response regulator receiver protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 548 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 8/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + R + H+ G+ +EA S EA ++ + P +++D ME + Sbjct: 2 RILIVDDDSLNRFLLVHMLEQNGYPDCYEAESGHEALSLAKR-IQPELVLLDVMMEDMSG 60 Query: 62 FIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ + + ++ D + ++ G + F+ KPFN+ L + + Sbjct: 61 FEVAPLLKAQTDEIYLPIIFITALDDEDSLVRCLDVGGDDFVAKPFNKTILAAKISAHAR 120 Query: 120 MQKSK----DENQFL 130 ++ ++NQ L Sbjct: 121 TRELSKKSYEQNQQL 135 >gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 231 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME--G 58 +++LLV+ + + V A EA + + + +++D + Sbjct: 3 NTILLVEDEEALSSYLIPELKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPKLD 62 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + +R+ D+ V + +AG +GA+ ++ KPF E L +R + Sbjct: 63 GLEVLRRIRKND---DIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVL 119 Query: 119 QMQKSKDENQFL 130 + + + L Sbjct: 120 RHESHHHQQSEL 131 >gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550] gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550] Length = 243 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 15 NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 73 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 74 IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 130 Query: 120 MQKSKDEN 127 ++N Sbjct: 131 RYTYFNQN 138 >gi|89890994|ref|ZP_01202502.1| putative two-component response regulator [Flavobacteria bacterium BBFL7] gi|89516638|gb|EAS19297.1| putative two-component response regulator [Flavobacteria bacterium BBFL7] Length = 351 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +R+ L + V A + E +K P+ +V D M Sbjct: 3 MKKVLIIEDDTALRENTAELLELSDYEVITAPNGRAGIELAKKNK-PDVVVCDIMMPEVD 61 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + +L D +++ G GA+ +L KPF E L A+ Sbjct: 62 GYGVLEALSLDTSTNQIPFIFLSARTDHKEVRKGMDLGADDYLTKPFEEEELLKAIETRL 121 >gi|332342032|gb|AEE55366.1| transcriptional regulatory protein KdpE [Escherichia coli UMNK88] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 Q + Sbjct: 119 QSA 121 >gi|329769101|ref|ZP_08260522.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325] gi|328839447|gb|EGF89024.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + + + V + +A ++ + + ++D M + Sbjct: 2 RILLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDY-DGAILDVMMPKMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + E + G +GA+ +L KPF + L +R + + Q Sbjct: 61 TVVQKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQ 119 >gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 231 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D + + + + L G+ V A++ E +K N +++D ++ + Sbjct: 4 KILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSY-NLILLDLNLPDIAGE 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L + + GA+ ++ KPF L ++ + + Sbjct: 63 QLCKAIRKNSE---LPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRR 119 >gi|312887562|ref|ZP_07747156.1| two component transcriptional regulator, AraC family [Mucilaginibacter paludis DSM 18603] gi|311299932|gb|EFQ77007.1| two component transcriptional regulator, AraC family [Mucilaginibacter paludis DSM 18603] Length = 1363 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + R R + V EAT+ E + P +V D M LE Sbjct: 1105 ILIVEDNEDFRFFMRDNLQQH-YKVIEATNGLEGWQKALA-CHPELIVSDVMMPYLDGLE 1162 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V L K + ++GAN +L KPF+ E L ++ L + Sbjct: 1163 LSRKLKTDKRTNHIPVILLTASSGEAKQLECLKSGANDYLNKPFSFEILNVRIKNLLTLN 1222 Query: 122 KSKDE 126 ++ + Sbjct: 1223 RTLRK 1227 >gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + GF V A + E E + ++D + G+ Sbjct: 2 RILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPY-DAAMVDIMLPGLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V L + + + G + G + ++ KPF+ L + L + Sbjct: 61 TLIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRST 120 Query: 123 SKDENQFLDA 132 E L A Sbjct: 121 RVAEPSALSA 130 >gi|295705391|ref|YP_003598466.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803050|gb|ADF40116.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL D +R++ RH G++V EA EA K+ + V+D M Sbjct: 1 MIHILLADDDEHMRQLVRHYLQLEGYVVHEAKDGEEASGLLAKQH-IHLAVVDIMMPHKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R D + L + E G AG + ++ KPF + L F ++ L Sbjct: 60 GYEVCEEIRS---YYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALL 116 Query: 119 QMQKSKDE 126 + + +E Sbjct: 117 RRYEVVNE 124 >gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 246 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 14/141 (9%) Query: 1 MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M +L+++ + K+ G+ V A + + P+ L++D + Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRF-ASIHPHLLLVDLML 67 Query: 57 E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 E VRQ V + + I GA+ ++ KPF+ L + Sbjct: 68 PKVDGFEVCRQVRQQSE---VPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARV 124 Query: 115 RELPQMQK----SKDENQFLD 131 + + K++ + L Sbjct: 125 KSHLRRYHRYNGLKEQEKVLS 145 >gi|257486804|ref|ZP_05640845.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988679|gb|EGH86782.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010275|gb|EGH90331.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LLVD + ++ F V S E + +V+D M + Sbjct: 1 MTRVLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGENEALSGRH-DIVVLDIMMPRMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R + V V L D I+G GA+ ++ KP + L +R + Sbjct: 60 GIEVLRRIRAQ---SQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIM 116 Query: 119 QMQKS 123 + ++ Sbjct: 117 RRVRA 121 >gi|229829584|ref|ZP_04455653.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM 14600] gi|229791573|gb|EEP27687.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM 14600] Length = 237 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL D +R++ R + + V EA EA + +KE + + V+D M + F Sbjct: 4 TILLADDEAEIRELLRLYLDHESYRVLEANDGLEALDLLKKEHV-DLCVLDVMMPKMDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ +++ V L + I G GA+ +L KPFN + + Sbjct: 63 C-LLKEIRKKSNMPVLMLSAKDGDSDKILGLNLGADDYLSKPFNPLEAVARINASIRR 119 >gi|224537465|ref|ZP_03678004.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM 14838] gi|224520903|gb|EEF90008.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM 14838] Length = 1390 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R L + +FEA EA E +K + + +V D M + Sbjct: 1140 TILIVEDNKDMRSYIRTLLVG-DYRLFEAGDGQEALEIVQKHTV-DLIVSDLMMPVMDGM 1197 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + L + G + +L KPF+ E LR +R + + Sbjct: 1198 ELSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNILSL 1257 Query: 121 QKSKDEN 127 ++ + Sbjct: 1258 RRKYKKM 1264 >gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|323491863|ref|ZP_08097037.1| putative two-component response regulator [Vibrio brasiliensis LMG 20546] gi|323313880|gb|EGA66970.1| putative two-component response regulator [Vibrio brasiliensis LMG 20546] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLV+ + V + F G + A + + E + +++D + + Sbjct: 1 MNRVLLVEDNREVAGILFDYFECEGMELDYADNGELGLKLAL-EGNFDLILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + L + + M+ G GA+ +L KPF+ E L + L + Sbjct: 60 GLTVCNKLREAGNSTPILMLTALDNRDDMLRGFEHGADDYLTKPFDLEILEARIMALIKR 119 Query: 121 QKSK 124 + + Sbjct: 120 YRGQ 123 >gi|315606859|ref|ZP_07881868.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae ATCC 33574] gi|315251524|gb|EFU31504.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae ATCC 33574] Length = 975 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ S V + + +F A E +L+P+ ++ D M + Sbjct: 706 TRVLIVEDSAAVAEYIGQQLGGE-YRLFYAADGESGWEKAL-QLVPDIIITDVMMPRLDG 763 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ L V V + +V E + G AGA+++L KPF+ + L + L + Sbjct: 764 CSLCRRIRRSDLLGHVPVVMVTAKVTHEDKMQGLEAGADAYLEKPFHGDELNRRVERLLE 823 Query: 120 MQKSKDENQFLDAI 133 Q+ + + L + Sbjct: 824 QQQLMRK-KLLAEL 836 >gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] Length = 226 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + + GF A E +E P+ +++D + G+ Sbjct: 1 MKARILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAF-RESNPDLVLLDLMLPGI 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I + + +DV V L + D ++ G +GA+ ++ KPF L +R + Sbjct: 60 DG-IKVCKLISAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLR 118 >gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 222 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V + E + + +V+D + + Sbjct: 1 MTCVLLAEDDVSISEPLARALRREGYTVDVTVNGVETLDRARAGD-IDLMVLDLGLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRAEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 Query: 121 QKSK 124 ++ Sbjct: 120 GGAE 123 >gi|284039172|ref|YP_003389102.1| histidine kinase [Spirosoma linguale DSM 74] gi|283818465|gb|ADB40303.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1355 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 SLLLVD + V F + + +A + EA ++ P+ ++ D +M + Sbjct: 1101 SLLLVDDNVEVLNYLEQTFQAQ-YTIRKAENGQEALRLIQQHE-PDVIICDVAMPVMDGV 1158 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + + + + L E + G AGA+ ++ KPF+ + L + +L + Sbjct: 1159 TFCRRLKTDVVTSHIPLVLLTARTAVESELIGLNAGADDYIAKPFHPQLLAVRIEKLIEN 1218 Query: 121 QKS 123 ++ Sbjct: 1219 RRL 1221 >gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|163853174|ref|YP_001641217.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218531978|ref|YP_002422794.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240140593|ref|YP_002965073.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Methylobacterium extorquens AM1] gi|254563083|ref|YP_003070178.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression [Methylobacterium extorquens DM4] gi|163664779|gb|ABY32146.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218524281|gb|ACK84866.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240010570|gb|ACS41796.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Methylobacterium extorquens AM1] gi|254270361|emb|CAX26357.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Methylobacterium extorquens DM4] Length = 241 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + V A E + + + +V+D + G Sbjct: 11 ILVVEDDREISALVARYLRANECRVSVAGDGRE-MDRVLADARVDLIVLDLMLPGEDGLS 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V + L + + I G GA+ +L KPFN L +R + + + Sbjct: 70 LCRRLRA---ASQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRK 126 Query: 122 KSKDEN 127 ++ ++ Sbjct: 127 GAEPQD 132 >gi|117618843|ref|YP_855862.1| two-component response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560250|gb|ABK37198.1| two-component response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 242 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 6/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+ + + + G A EA + P+ L++D M + Sbjct: 16 VLIAEDEAEIADILAAYLQRHGLRTLHAADGREALAM-HQTCKPDLLLLDVQMPQLDGWQ 74 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ +R D+ V L + G R GA+ +++KPFN + ++ + + Sbjct: 75 VLSEIRARG---DMPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRS 131 Query: 122 KSKDE 126 ++ + Sbjct: 132 QAAKQ 136 >gi|56752288|ref|YP_172989.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|56687247|dbj|BAD80469.1| two-component response regulator [Synechococcus elongatus PCC 6301] Length = 411 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+ + + I R V G V S EA ++ + L +D M G Sbjct: 174 RLLVAEDNEINRDVLERRLRRLGHDVVCVASGQEALNQLAQQP-FDLLFLDLMMPGLTGF 232 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + ++ P ++ V + D E +I R GA +L KPF L+ + Q Sbjct: 233 EVLQQLKADPTLAELPVLMISALDDLESVIRCLRLGATDYLTKPFEPTLLQTRLETCLQH 292 Query: 121 QKSKDEN 127 ++ +D Sbjct: 293 KRLRDRE 299 >gi|27377710|ref|NP_769239.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350855|dbj|BAC47864.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 2095 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + LLVD + G V AT+ EA E +++D M + Sbjct: 1975 KTALLVDDDARNIFALSSVLERRGMKVLTATTGREAVTLVESNPEIAIVLMDIMMPQMDG 2034 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +R+ P + + L + AGA+ +L KP N + L A+R Sbjct: 2035 YQTIGVIRENPAFLRLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTDQLLLAIRMWLH 2094 Query: 120 M 120 Sbjct: 2095 R 2095 Score = 90.3 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ +V L D GF V A EA E K+ P + +D + +L Sbjct: 1709 LLIVEDDPHYARVLVDLARDKGFKVLVAARGAEALELA-KQYQPRAVSLDVFLPDMLGWT 1767 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ PL + V + E GA SF+ KP E + A+ ++ + Sbjct: 1768 VLSQLKHNPLTRHIPVQIIT---LDEDRQHALARGALSFVNKPTTTEGVSAALTQIKEYA 1824 Query: 122 KSKDE 126 + + + Sbjct: 1825 RPRRK 1829 Score = 73.3 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 5/93 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+V+ + + R L + + + A +E + +V+D + + Sbjct: 1829 KRLLIVEDNEAEQLSIRELLHHDDIEIVTTDTGAGALSTL-REAPCDCVVLDLRLPDMSG 1887 Query: 62 F--IAHVRQMPLGTDVFVYYLLME--VDFEKMI 90 F + +R +++ V E Sbjct: 1888 FEVLDQIRHDEALSNIPVVVFTGRELSAEEDAE 1920 >gi|298485836|ref|ZP_07003914.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159660|gb|EFI00703.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 705 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S E + P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L + ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|312115264|ref|YP_004012860.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC 17100] gi|311220393|gb|ADP71761.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC 17100] Length = 121 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L VD S +R + + GF V EA + + + ++ D +M + Sbjct: 3 KRVLTVDDSKTMRDMVAFTLKNAGFDVVEAEDGQKGLSVLGSANV-DVIITDVNMPNMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 FI HVR P + L E E G AGA +++KPF+ E L + ++ Sbjct: 62 MTFIRHVRAQPQFKATPILVLTTEGSDETKQKGREAGATGWIVKPFSPEKLLQVVNKV 119 >gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424] gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis LMG 19424] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + R D G+ V A +A E + +++D + + Sbjct: 2 RILLVEDEATLAAQVRASLADAGYAVDTAADGLDAW-HLGAEEPYDAVILDLGLPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + + G AGA+ +L KPF E L +R L + Sbjct: 61 SVLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRR 118 >gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185] gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|158520639|ref|YP_001528509.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158509465|gb|ABW66432.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 240 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + + + G+ V A + + P+ +V+D + G+ Sbjct: 7 KQILIIEDEAHIAQGLQLNLSLKGYDVMVAENGSRGLAAWKAHN-PDLIVLDIMLPGMDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + H+R + + L + + G G + +L KPF+ E + L Sbjct: 66 LSVLQHIRLEDE--KIPILILSAKKEPIDKRKGLTYGVDDYLTKPFDLEEFLLRVDRLLT 123 Query: 120 M 120 Sbjct: 124 R 124 >gi|156740269|ref|YP_001430398.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156231597|gb|ABU56380.1| response regulator receiver sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 407 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 51/127 (40%), Gaps = 3/127 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++V+ + + + G+ + EA C + + +++D + + Sbjct: 5 TRIMVVEDDPTIAGLIEFVLRGAGYRTLLTATATEAL-ACIETGDIDLVILDWMLPDIPG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +++ + + L + + I +GA+ +L KPF E L +R L + Sbjct: 64 VQICLALKERSGRGFLPILMLTAKGEVSDRITALDSGADDYLAKPFYIEELLARVRALLR 123 Query: 120 MQKSKDE 126 ++ ++ E Sbjct: 124 IRAAESE 130 >gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + + G+ + E + + +++D + Sbjct: 1 MSRILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQD-FDVILLDLMLPELN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E VR++ + + ++G GA+ +++KPF E L +R L Sbjct: 60 GIEVARRVREV---KSTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALL 116 Query: 119 QMQKSKDENQ 128 + + E + Sbjct: 117 RRIHLEGEQK 126 >gi|94480746|emb|CAK02710.1| putative response regulator [Escherichia coli] Length = 239 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + + + R D G+ + AR +K+ + +++D + Sbjct: 5 KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121 Query: 120 MQKSKDENQFLD 131 Q++ +N L Sbjct: 122 RQEAMGQNILLA 133 >gi|85860826|ref|YP_463028.1| response regulator [Syntrophus aciditrophicus SB] gi|85723917|gb|ABC78860.1| response regulator with sigma 54 interaction domain [Syntrophus aciditrophicus SB] Length = 502 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+VD +R V + + G+ V +A EA E EKE + +V D M + Sbjct: 1 MEKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKE-QIDVVVTDLKMPKLS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V + E + + GA ++ KPF+R+ L + + + Sbjct: 60 GLGLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRT 119 Query: 121 Q 121 + Sbjct: 120 R 120 >gi|75911110|ref|YP_325406.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704835|gb|ABA24511.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 238 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR + + + V A A E + P+ +++D ++ V+ F Sbjct: 5 KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFE-QFNPDLVILDVNLPDVIGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++M VFV L D I G GA+ +L KPF L + + + Q+ Sbjct: 64 -NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQR 122 Query: 123 --SKDENQFL 130 + E + L Sbjct: 123 VVTTAEQKRL 132 >gi|93006072|ref|YP_580509.1| two component transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92393750|gb|ABE75025.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + F GF + A + + +++D + G+ Sbjct: 1 MYKILIIEDNPDIVANIYAFFEPKGFELDNAHNSLSGLALASSNRY-DVILLDVMLPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ L V L +AG +GA+ +L+KPF+ L ++ L Sbjct: 60 GTKLCKTLRE-ELHDKTPVLMLTARDTVLDKVAGFDSGADDYLVKPFSLVELEARIKALI 118 Query: 119 QMQK 122 + + Sbjct: 119 RRHQ 122 >gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|147671709|ref|YP_001214988.1| chemotaxis protein CheY [Vibrio cholerae O395] gi|153816752|ref|ZP_01969419.1| chemotaxis protein CheY [Vibrio cholerae NCTC 8457] gi|153821179|ref|ZP_01973846.1| chemotaxis protein CheY [Vibrio cholerae B33] gi|229506834|ref|ZP_04396343.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae BX 330286] gi|229510372|ref|ZP_04399852.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae B33] gi|229514501|ref|ZP_04403962.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae TMA 21] gi|229517497|ref|ZP_04406942.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae RC9] gi|229528021|ref|ZP_04417412.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae 12129(1)] gi|229605307|ref|YP_002876011.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae MJ-1236] gi|255746179|ref|ZP_05420126.1| chemotaxis regulator CheY [Vibrio cholera CIRS 101] gi|262158668|ref|ZP_06029782.1| chemotaxis regulator CheY [Vibrio cholerae INDRE 91/1] gi|262168922|ref|ZP_06036616.1| chemotaxis regulator CheY [Vibrio cholerae RC27] gi|262192316|ref|ZP_06050471.1| chemotaxis regulator CheY [Vibrio cholerae CT 5369-93] gi|126512771|gb|EAZ75365.1| chemotaxis protein CheY [Vibrio cholerae NCTC 8457] gi|126521238|gb|EAZ78461.1| chemotaxis protein CheY [Vibrio cholerae B33] gi|146314092|gb|ABQ18632.1| chemotaxis protein CheY [Vibrio cholerae O395] gi|229334383|gb|EEN99868.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae 12129(1)] gi|229345533|gb|EEO10506.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae RC9] gi|229348481|gb|EEO13439.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae TMA 21] gi|229352817|gb|EEO17757.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae B33] gi|229357185|gb|EEO22103.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae BX 330286] gi|229371793|gb|ACQ62215.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae MJ-1236] gi|255735933|gb|EET91331.1| chemotaxis regulator CheY [Vibrio cholera CIRS 101] gi|262022621|gb|EEY41328.1| chemotaxis regulator CheY [Vibrio cholerae RC27] gi|262029548|gb|EEY48198.1| chemotaxis regulator CheY [Vibrio cholerae INDRE 91/1] gi|262031809|gb|EEY50392.1| chemotaxis regulator CheY [Vibrio cholerae CT 5369-93] gi|327486053|gb|AEA80459.1| Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae LMA3894-4] Length = 119 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A EA +K + ++ D +M + Sbjct: 1 MAKVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKA-RFDVIISDVNMPVMT 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 EF+ VR + L E EK G GA +L+KPFN ETL ++ + Sbjct: 60 GFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119 >gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 246 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + GF V A A + E P+ LV+D + G Sbjct: 20 RRVLVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEA-WQPDLLVLDVMLPGFDG 78 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE V+ V V L D M+ G GA+ ++ KPF+ L + L + Sbjct: 79 LEVCRRVQAR---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLR 135 Query: 120 MQKSKD 125 + Sbjct: 136 RVERAA 141 >gi|298374437|ref|ZP_06984395.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_19] gi|298268805|gb|EFI10460.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_19] Length = 573 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L++D S +R RH+F + V EA + E E E P++++ D M Sbjct: 319 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 376 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ +P V V L +V+ E +IAG GA+ ++ KPF+ E LR + L + Sbjct: 377 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 436 Query: 120 MQKSKDENQF 129 + DE + Sbjct: 437 RR---DEMRR 443 >gi|256783375|ref|ZP_05521806.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] Length = 1331 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + E +++D M + Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1270 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R++P ++ + + + +GA+ ++ KP + + L +R Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329 >gi|315500124|ref|YP_004088927.1| response regulator receiver modulated diguanylate cyclase [Asticcacaulis excentricus CB 48] gi|315418136|gb|ADU14776.1| response regulator receiver modulated diguanylate cyclase [Asticcacaulis excentricus CB 48] Length = 454 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD ++ + + V A S EA E E P+ +++D M G Sbjct: 4 KVLVVDDIPANVRLLQAKLEADYYDVVTAHSGQEAIETAIIE-QPDIILLDVMMPGVDGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++++ + + + + ++G AGA+ FL KP + L ++ L ++ Sbjct: 63 EVTRQLKELAETRHIPIILVTALDGRDDRLSGLEAGADDFLTKPLDDVILFARLKALVRL 122 Query: 121 QKSKDENQFLD 131 + DE + + Sbjct: 123 KHLSDELRQRE 133 Score = 55.6 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60 ++L++D + + T A + + LV++ + Sbjct: 156 NVLILDDQVRQAERLMVALGEQ-HRCAYETDPKAALKIAL--GRVDLLVLNLAARDFDPL 212 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F+AH+R L + V L + ++ G G + L +P + + L R + Sbjct: 213 RFVAHLRSSELTRQLPVLGLFNPDERPTLLKGLELGVSDVLPRPVDIQELLARARGQIRR 272 Query: 121 QKSKD 125 ++ D Sbjct: 273 KRYAD 277 >gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 236 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 73 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131 >gi|227885266|ref|ZP_04003071.1| response regulator [Escherichia coli 83972] gi|227837792|gb|EEJ48258.1| response regulator [Escherichia coli 83972] gi|307556495|gb|ADN49270.1| putative response regulator [Escherichia coli ABU 83972] Length = 239 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + + + R D G+ + AR +K+ + +++D + Sbjct: 5 KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121 Query: 120 MQKSKDENQFLD 131 Q++ +N L Sbjct: 122 RQEAMGQNILLA 133 >gi|227892745|ref|ZP_04010550.1| two component response regulator [Lactobacillus ultunensis DSM 16047] gi|227865386|gb|EEJ72807.1| two component response regulator [Lactobacillus ultunensis DSM 16047] Length = 221 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + +V G+ V + +A E KE + +++D M + Sbjct: 2 RILVAEDEPQLLRVLTAAMKHAGYDVDPVDNGLKAVEHA-KESSYDVIILDIMMPVMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A G +V L + + + + G +GA+ ++ KPF+ + L +R + Sbjct: 61 TALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYITKPFSLKELLARLRSKERRAD 120 Query: 123 SKDENQF 129 N+ Sbjct: 121 DYTPNEL 127 >gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTKQTI 127 >gi|150025871|ref|YP_001296697.1| two-component system response regulatory protein RprY [Flavobacterium psychrophilum JIP02/86] gi|149772412|emb|CAL43892.1| Two-component system response regulatory protein RprY [Flavobacterium psychrophilum JIP02/86] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + R + F V A + E E +K+ + ++D M Sbjct: 5 KKILLVEDDPNFGSILRDYLSMNDFEVTLAKNGMEGFEKFKKDNY-DLCILDVMMPYKDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +V + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 64 YTLAKEIREKNKEVPIVFLTAKSMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 123 Query: 122 KSK 124 S+ Sbjct: 124 ASE 126 >gi|153834901|ref|ZP_01987568.1| transcriptional regulatory protein CpxR [Vibrio harveyi HY01] gi|148868672|gb|EDL67754.1| transcriptional regulatory protein CpxR [Vibrio harveyi HY01] Length = 221 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + G+ V A ++ EK + + +++D + + Sbjct: 1 MSRVLIVDDDVPLCELLETVLQEEGYTVSSVHCGESALQYMEKTPV-DLVLLDVMLPNLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L D M+ G +AGA+ ++ KPFN L ++ + + Sbjct: 60 GMQVARRICQRFA-TPILMLTALNDENSMLDGYKAGADQYIGKPFNVAELLMRIKAILRR 118 Query: 121 QKSKDENQFL 130 + + Q + Sbjct: 119 VGLERQRQAM 128 >gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] Length = 304 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD S G V ATS A C K + P+ +++D M G+ F Sbjct: 8 TVLVVDDSPETLGFVTEALKKTGVAVLVATSGETALNICSK-VTPDTILMDAVMPGLDGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P V V ++ + E ++ +G FL KP + + L+ ++ + Sbjct: 67 ETCRQIKENPALQHVPVIFMTGLSETEHVVKALESGGVDFLTKPIDVDELKARIKVHLKN 126 Query: 121 QKS 123 +S Sbjct: 127 ARS 129 >gi|159900821|ref|YP_001547068.1| response regulator receiver modulated diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159893860|gb|ABX06940.1| response regulator receiver modulated diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 552 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 2 DSL---LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 ++ L+++ +++V ++ G+ + TS E ++ + +++D + Sbjct: 236 KTIAELLVIEDDQEIQQVVSQGLSNAGYSITVTTSGEEGLRLAMRQP-FDLIMLDLMLPD 294 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + +R+ + + E+ + G + GA+ ++ KPF+ L + Sbjct: 295 IDGWTVLRQLRERTQTATTPLMLVSALGKPEEKVRGFQLGADDYITKPFDWNELLARISA 354 Query: 117 LPQMQKSK 124 + ++ + Sbjct: 355 SLRRREVE 362 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 3/81 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +LL++ S R V G+ V A + P +++D + + Sbjct: 116 VLLIEDSQTYRAVVSARLTQSGYNVVTAPDGMAGLDLARA-YQPVAIILDLMLPHLNGEQ 174 Query: 62 FIAHVRQMPLGTDVFVYYLLM 82 + + P + + Sbjct: 175 VAFVLGEDPETKHIPIIIYTG 195 >gi|83745618|ref|ZP_00942676.1| OmpR [Ralstonia solanacearum UW551] gi|83727695|gb|EAP74815.1| OmpR [Ralstonia solanacearum UW551] Length = 245 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R + GF V + + P +V+D M V Sbjct: 4 TKILVVDDDVELRDLLREYLSQQGFAVSVMHDG-DGLAARLERERPALVVLDLMMPKVDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A D+ V L D I G GA+ +L KPF+ L + + + + Sbjct: 63 LSALRDLRARNDDMPVILLTARGDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122 Query: 122 KS 123 ++ Sbjct: 123 QA 124 >gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + K+ + G+ + A+ EA E + + + + +++D M + Sbjct: 5 TILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKV-DLIILDVMMPQMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + + L + IAG GA+ ++ KPF+ L ++ + K Sbjct: 64 EACMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRRYK 122 >gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L++D + + + G+ V E +A K+ + ++D M Sbjct: 3 TRILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDAL-RFIKDNPVDLAMLDIMMPKING 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ V L +++ I G GA+ ++ KPFN + ++ + Sbjct: 62 FEICKIIREKYTF---PVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLR 118 Query: 120 MQK 122 K Sbjct: 119 RYK 121 >gi|262403141|ref|ZP_06079701.1| chemotaxis regulator CheY [Vibrio sp. RC586] gi|262350640|gb|EEY99773.1| chemotaxis regulator CheY [Vibrio sp. RC586] Length = 119 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L VD S +R++ H D G+ V A+ +A +K + ++ D +M G Sbjct: 1 MTKVLAVDDSISIRQMVSHTLQDAGYEVETASDGRDALTKAQK-TRFDVIISDVNMPVMG 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +F+ VR + + L E EK G GA +L+KPFN ETL ++ + Sbjct: 60 GFDFVKAVRMQSQYKFIPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119 >gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 241 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + +++ +V+D M G+ Sbjct: 12 MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 71 GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 129 >gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+++ + + + + GF + A E EK + P+ +++D + Sbjct: 3 KRILIIEDEEQIALLLKDYLSQAGFEAHMHGTGKGALETVEK-ISPDAVILDIMLPEVDG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ +R+ + + L +V+ + G GA+ ++ KPF+ + ++ + + Sbjct: 62 LDICRGIRKKSA---LPIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVLR 118 Query: 120 MQKSKDENQFLD 131 + Q + Sbjct: 119 RTSPEKPVQSIS 130 >gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+V+ H R+ ++ GF+V + E + +++D + + Sbjct: 1 MK-LLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDY-DLIILDVMLPDIN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + + L + E + G GA+ +L+KPF+ L +R L + Sbjct: 59 GWEIAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRR 118 >gi|188534447|ref|YP_001908244.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188029489|emb|CAO97366.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 226 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R R GF + +A ++ P +++D + Sbjct: 1 MTTILIVEDEKEIRHFLRVALEGEGFRIVDAETLKRGL-IEAATRKPQLVILDLGLPDGD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 FI +RQ + + V L D + IA AGA+ FL KPF L +R Sbjct: 60 GSQFIREIRQ---WSTIPVIVLSARSDEQDKIAALDAGADDFLTKPFGVGELLARVRVAL 116 Query: 119 QMQ 121 + Sbjct: 117 RHH 119 >gi|218246869|ref|YP_002372240.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|218167347|gb|ACK66084.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] Length = 481 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ K+ ++ D G+ V +A A P+ +++D + + Sbjct: 11 ILVVEDQLDNLKLLSNILWDEGYQVRQAIDGEMAL-IAIDTKYPDLILLDIKIPRLDGYQ 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ V +L + + + GA ++ KP+ + + ++ Sbjct: 70 LCQTLKAKETTANIPVIFLSAFDELWEKVKAFEMGAVDYITKPYQAPEVLARVENQVKLS 129 Query: 122 KSKDENQ 128 + + + Sbjct: 130 LLQKQLK 136 >gi|218245591|ref|YP_002370962.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|257058637|ref|YP_003136525.1| response regulator receiver protein [Cyanothece sp. PCC 8802] gi|218166069|gb|ACK64806.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|256588803|gb|ACU99689.1| response regulator receiver protein [Cyanothece sp. PCC 8802] Length = 121 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++LLV+ S + +++ + D G+ V A +A + EK P+ +V+D M G+ Sbjct: 1 MRAVLLVEDSPVQQEMISGILEDNGWRVIIAEDGFKALKEIEK-FSPDVIVLDIVMPGMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V V + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRLKSDPKLKNVPVVICSSKGEEFDRYWGIKQGADAYVAKPFEPIELVGTIKKLL 119 Query: 119 QM 120 + Sbjct: 120 RK 121 >gi|194476803|ref|YP_002048982.1| two component transcriptional regulator, LuxR family protein [Paulinella chromatophora] gi|171191810|gb|ACB42772.1| two component transcriptional regulator, LuxR family protein [Paulinella chromatophora] Length = 254 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LLLVD +R + D GF + A+ E E +E+LP+ ++ D M Sbjct: 30 RLLLVDDEPGLRSAVQAYLEDEGFQITTASDGQEGWEKA-QEILPDLVISDVMMPRCDGY 88 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + +R V +L + I G +AG + ++ KPF+ + L Sbjct: 89 KLLKLLRTDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDEL 138 >gi|154251472|ref|YP_001412296.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155422|gb|ABS62639.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 7/129 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L++D +RK+ R + G+ + EA + A + + P+ +++D + L Sbjct: 7 RVLVIDDEPPIRKLLRMGLSAHGYEIQEAPNGRTALDMLAQN--PDLIILDLGLPDIQGL 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R V + L D + GA+ ++ KPF + L MR Sbjct: 65 DLLRTIRSRNE--SVPIVVLSSRGDETGKVEALDLGADDYVTKPFGMDELLARMRAAL-R 121 Query: 121 QKSKDENQF 129 + + + + Sbjct: 122 HRLQMQGER 130 >gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 234 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++++VD +R++ + G+ V +A + E E +K + + +V+D M + Sbjct: 5 TIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEV-HLIVLDIMMPKIDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR++ + + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREIAE---MPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|27367550|ref|NP_763077.1| Chemotaxis regulator [Vibrio vulnificus CMCP6] gi|37677352|ref|NP_937748.1| chemotaxis protein CheY [Vibrio vulnificus YJ016] gi|320159405|ref|YP_004191783.1| chemotaxis regulator [Vibrio vulnificus MO6-24/O] gi|27359122|gb|AAO08067.1| Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio vulnificus CMCP6] gi|37201898|dbj|BAC97718.1| chemotaxis protein CheY [Vibrio vulnificus YJ016] gi|319934717|gb|ADV89580.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio vulnificus MO6-24/O] Length = 119 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A +A + K + ++ D +M + Sbjct: 1 MVKILAVDDSVSIRQMVSHTLKDAGYDVETANDGSDALQK-SKTTKFDVVISDVNMPNMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R +P + + L E EK + G AGA +L+KPFN +TL ++ + Sbjct: 60 GFELVRAMRAIPQYKFIPILMLTTETSPEKKMEGKSAGATGWLVKPFNPDTLLKTLKRVL 119 >gi|297171130|gb|ADI22141.1| HD-GYP domain [uncultured myxobacterium HF0200_19H16] Length = 496 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD V + G+ V S A + + E + ++ D M + Sbjct: 13 RVLVVDDEEAVLDIVNEFLVLEGYYVKPVGSARAALDQLKTEP-FDVILTDLKMPDMDGI 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R D + + E I + GA ++LKPF + + ++ + ++ Sbjct: 72 ELIQRIRDWNPDPVLVMMTGFGTVETAIEAMKLGAFDYILKPFKPDDVVAVLKRALEKRR 131 Query: 123 SKDEN 127 + EN Sbjct: 132 LRREN 136 >gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+VD +RK+ RH G++V EA +A E + +++D M + Sbjct: 1 MANLLVVDDDGAIRKLVRHFMETEGYIVEEAVDGLDAIRKLET-FKADLVILDVMMPNMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R D+ + L + + + I G G + +++KPF E L ++ L Sbjct: 60 GYRLCQELR--DYYADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALL 117 Query: 119 QMQK 122 + + Sbjct: 118 KRYR 121 >gi|299147147|ref|ZP_07040214.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298515032|gb|EFI38914.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1338 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + R ++ F V A++ EA E KE + + +V D M + Sbjct: 1082 TVLLVEDNVDLLNLTRESLAEW-FRVLRASNGREALEVLAKENV-DVIVSDVMMPEMDGL 1139 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V+ + + V L + E + G GA+ ++ KPF+ + LR + L ++ Sbjct: 1140 ELCSKVKSEISYSHIPVILLTAKTTLESKVEGLECGADVYVEKPFSVKQLRMQIENLLKL 1199 Query: 121 QKS 123 ++S Sbjct: 1200 RQS 1202 >gi|291612955|ref|YP_003523112.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291583067|gb|ADE10725.1| two component transcriptional regulator, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 242 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R + + G+++ A A + + +V+D ++ G L Sbjct: 9 RILIVDDDEDIRNLLADYLGEQGWLISTAQDG-TAMQQVLDSTPIDLIVLDLTLPGSDGL 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V L I G GA+ +L KPF L +R + + Sbjct: 68 TLCRDLRARSA---IPVIMLTARSAPLDRILGLEMGADDYLCKPFEPRELLVRIRNVLRR 124 Query: 121 QKSKDE 126 S Sbjct: 125 SGSAAR 130 >gi|261342991|ref|ZP_05970849.1| hypothetical protein ENTCAN_09593 [Enterobacter cancerogenus ATCC 35316] gi|288314742|gb|EFC53680.1| transcriptional regulatory protein CpxR [Enterobacter cancerogenus ATCC 35316] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L + GF V A +A + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALSLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|224588363|gb|ACN58987.1| GAF sensor hybrid histidine kinase [uncultured bacterium BLR19] Length = 2129 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 2/116 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +F F V A S EA + +++D M + Sbjct: 2009 KNILVVDDDVRNLFALTTVFERFNINVITAESGKEAINILNENPKIEMVLMDIMMPEMDG 2068 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +R+ + + + + + AGA+ ++ KP + L MR Sbjct: 2069 YETTQKIRREHKNSSLPIIAVTAKAMKGDRQKCIEAGASDYITKPVKIDQLLSLMR 2124 Score = 67.9 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 6/111 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++ ++ G AT+ E +F + +P + +D + Sbjct: 1742 KVVLVVEDDLRFGRIIIEKAHENGLKAIVATNYLEVFDFINR-FMPIAITLDVKLPETSG 1800 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 I +R + ++ + E + + GA SF+LKP N + L Sbjct: 1801 WKVIDLLRNDLTYRHIPIHVISG---EENKVLALKRGARSFILKPLNNDIL 1848 Score = 52.5 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 4/85 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 S+L+V+ + + + +D ++ A + EA E E + +++D ++ + Sbjct: 1864 KSILIVEDNELDSSQIAKMHDDEKLLITIAGTAKEALEKVATED-FDCIILDYTLPDMPG 1922 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEV 84 E ++ V V + Sbjct: 1923 QELLSEV-SKAKKNLTPVIVYSAKD 1946 >gi|153869802|ref|ZP_01999327.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073730|gb|EDN70671.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 151 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ D S I K + F V A + + + P+ +++D M G+ Sbjct: 7 TILIADDSLINIKFLLYYLTNKVEFRVLVANNGKSVLQIA-SQANPDLILLDVMMPGIDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ D+ + ++ E I R GA ++ KP E L + Sbjct: 66 FQVCEQLKSEEHTRDIPIIFMTALDKTEDKIKAFRLGAADYITKPLQPEELLARVTTQLT 125 Query: 120 MQKSKDE 126 ++K + + Sbjct: 126 IRKQQKQ 132 >gi|114797342|ref|YP_762221.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737516|gb|ABI75641.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +R+ F GF A S EA +E + + +++D M G+ Sbjct: 7 ILIVDDEEDLRETLAEQFELTDGFTAMVAASGEEALRKAAEERV-DLVILDVDMPGMNGR 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R G V V L +AG AGAN ++ KPF+ L +R + Sbjct: 66 EVCRQLR--EKGIRVPVIMLTGRSGESDTVAGLEAGANDYVAKPFSFAVLLARVRSQLR 122 >gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 + +VD +R + G+ V + + EK+ P+ L++D M G+ Sbjct: 5 IYIVDDDKNIRDLMVKYVEKEGYTVKSFENAEAVLDNFEKDK-PDMLILDIMMPGMDGYE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ +DV + + + I G G++ ++ KPF+ L M+ + + Sbjct: 64 LCRQIRKK---SDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRV 120 Query: 122 KSKDENQFL 130 K N + Sbjct: 121 KMPKRNDEI 129 >gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 49/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + G+ A +E+ P+ +++D + + Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKF-REVNPDLVILDLMLPVLDGLE 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++ + L + + + + G +GA+ +L+KPF+ E L +R + Sbjct: 66 VA-RRIRKTSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRR 121 >gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25] gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25] Length = 223 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + G+ V A + E + +V+D M + + Sbjct: 2 NILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQAL-ETPFDVIVLDVMMPKMDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ D V +L D I G GA+ +L+KPF+ L +R L + Sbjct: 61 -EVLRRLRKEADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119 Query: 123 SKDENQF 129 S++E Q Sbjct: 120 SREEEQL 126 >gi|229526361|ref|ZP_04415765.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae bv. albensis VL426] gi|229336519|gb|EEO01537.1| chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY [Vibrio cholerae bv. albensis VL426] Length = 119 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A EA +K + ++ D +M + Sbjct: 1 MAKVLAVDDSISIRQMVSHTLKDAGYEVETAADGREALAKAQKA-RFDVIISDVNMPVMT 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 EF+ VR + L E EK G GA +L+KPFN ETL ++ + Sbjct: 60 GFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119 >gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 245 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + F V++ S +A EKE L + ++D + F Sbjct: 18 NILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKL-DLAILDVMLPETDGF 76 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V L + + I G GA+ ++ KPF L ++ + Sbjct: 77 QICRKIREKYNY---PVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQLRR 133 Query: 121 QK 122 K Sbjct: 134 YK 135 >gi|156977967|ref|YP_001448873.1| transcriptional regulatory protein CpxR [Vibrio harveyi ATCC BAA-1116] gi|156529561|gb|ABU74646.1| hypothetical protein VIBHAR_06763 [Vibrio harveyi ATCC BAA-1116] Length = 221 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + G+ V A ++ EK + + +++D + + Sbjct: 1 MSRVLIVDDDVPLCELLETVLQEEGYTVSSVHCGESALQYMEKTPV-DLVLLDVMLPNLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L D M+ G +AGA+ ++ KPFN L ++ + + Sbjct: 60 GMQVARRICQRFA-TPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRR 118 Query: 121 QKSKDENQFL 130 + + Q + Sbjct: 119 VGLERQRQAM 128 >gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905] gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905] Length = 220 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 53/123 (43%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ ++++ + + + A+ E + + + +++D M + F Sbjct: 4 NILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQS-FDLILLDVMMPNLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + +++ + +L + + + G G + ++ KPF+ L ++ + + Sbjct: 63 EVA-KMLRNQSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSN 121 Query: 123 SKD 125 K+ Sbjct: 122 HKN 124 >gi|86159891|ref|YP_466676.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776402|gb|ABC83239.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C] Length = 351 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD S + + V A +A E P+ +++D + + Sbjct: 35 KILVVDDSRTQLDWLVRVLEREEYDVRTAADGKDAIRKVRGEP-PDLVLLDMILPDMDGL 93 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V+ P + V L ++ D + +AG R GA+ FL KPF + + ++ Sbjct: 94 EVLRIVKARPEDQFIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRI 153 Query: 121 QKSKDENQ 128 + +D+ + Sbjct: 154 KTLQDQLR 161 >gi|21225602|ref|NP_631381.1| two-component system sensory histidine kinase [Streptomyces coelicolor A3(2)] gi|8246822|emb|CAB92873.1| putative two-component system sensory histidine kinase [Streptomyces coelicolor A3(2)] Length = 1331 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + E +++D M + Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1270 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R++P ++ + + + +GA+ ++ KP + + L +R Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329 >gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 249 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A A +E P+ +V+D + + Sbjct: 24 RVLVVDDELSITELLSMALRYEGWRIRSAGDGQGAV-RAAREFRPDAVVLDLMLPDMDGL 82 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R DV V +L + E IAG AG + ++ KPF E + +R L + Sbjct: 83 SALGRLRRELPDVPVLFLTAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRGLIRRSG 142 Query: 123 SKDENQFLDAI 133 + D + DA+ Sbjct: 143 AAD--RRSDAV 151 >gi|317473954|ref|ZP_07933233.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316909796|gb|EFV31471.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 245 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G++V A S EA + N L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYVVDTANSAEEALKL--DISAYNLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + + + + I Sbjct: 123 TQQGEGERAPEQI 135 >gi|309791249|ref|ZP_07685780.1| response regulator receiver modulated diguanylate cyclase [Oscillochloris trichoides DG6] gi|308226675|gb|EFO80372.1| response regulator receiver modulated diguanylate cyclase [Oscillochloris trichoides DG6] Length = 321 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ D +R+V L G+ + + + + + ++P+ L+ID M + Sbjct: 11 QTILIADDDESIRQVLMILLRSVGYRIELVGNGSDLIQRAQV-IMPHLLLIDVMMPDMDG 69 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R + L + + ++ G +GA+ +++KPFN L +R + Sbjct: 70 YEALRQLRNDTRTAHIPAIMLTARGEPKDLVHGFDSGADDYVIKPFNTVELIARVRSQLR 129 Query: 120 M 120 Sbjct: 130 R 130 >gi|301017928|ref|ZP_07182553.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300399923|gb|EFJ83461.1| response regulator receiver domain protein [Escherichia coli MS 69-1] Length = 239 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + + + R D G+ + AR +K+ + +++D + Sbjct: 5 KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 64 LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121 Query: 120 MQKSKDENQFLD 131 Q++ +N L Sbjct: 122 RQEAMGQNILLA 133 >gi|294667110|ref|ZP_06732335.1| two-component system regulatory protein, OmpR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603120|gb|EFF46546.1| two-component system regulatory protein, OmpR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 259 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 28 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 86 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + ++ Sbjct: 87 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146 Query: 124 KDEN 127 +E Sbjct: 147 SNEQ 150 >gi|283769507|ref|ZP_06342403.1| response regulator receiver domain protein [Bulleidia extructa W1219] gi|283103775|gb|EFC05161.1| response regulator receiver domain protein [Bulleidia extructa W1219] Length = 222 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R + G++ A++ EA E + + +V+D M + Sbjct: 1 MATILIVDDEEKIRFLIDTYAKHEGYLTVLASNGLEALEKLKMHS-IDLVVMDVMMPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F A + L ++ V L + G G + ++ KPF+ + L MR + Q Sbjct: 60 GFSALEKMKALQPNLPVILLTALGQEYDKVHGFELGVDDYVEKPFSPKVLLLRMRAILQR 119 >gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ +R+ L + A + F E + +ID + + Sbjct: 2 RLLVVEDEQSLREQIASLVAAEKYACDTAADGRDGL-FLGCEYDYDLAIIDLGLPLMDGT 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + + L +++ + G AGA+ +L KPF+ E L+ + L + Sbjct: 61 TVIRELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRAS 120 Query: 123 SKDENQF 129 +Q Sbjct: 121 GHASSQL 127 >gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 1319 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + I R+V L N+ G ++ A + EA E + + +++D M + Sbjct: 964 RVLLVEDNAINREVVLELLNNSGLIIETAVNGQEALERVSQHP-FDLILMDIQMPLMDGY 1022 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +P + L E A AG N F+ KP L A+++ Sbjct: 1023 TATRAIRTLPGWEQTPILALTASAFEEDRKACKAAGMNDFIAKPVTPAKLFEALQQWL 1080 >gi|325684936|gb|EGD27080.1| response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD H + ++ + G+ A + EA +++D M Sbjct: 1 MK-ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + VR+ +D+ + + + I G GA+ ++ KPFN + +R L Sbjct: 60 GIDVVKEVRKD---SDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLL 116 Query: 119 QMQKSKDENQ 128 + + + + + Sbjct: 117 RRSQKQVKEE 126 >gi|304391317|ref|ZP_07373261.1| protein PetR [Ahrensia sp. R2A130] gi|303296673|gb|EFL91029.1| protein PetR [Ahrensia sp. R2A130] Length = 246 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +R++ + GF V A+ EAR + L + L++D M G + Sbjct: 27 ILVVDDDSRIRELLTRYLAEQGFRVSSASDASEARRQL-QGLSFDLLIVDVMMPGERGTD 85 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +R+ DV V L + + IAG AGA+ +L KPF+ L + + + Sbjct: 86 FTRSIREDL---DVPVMMLTALGETDSRIAGLEAGADDYLAKPFSPRELLLRINAILKRV 142 Query: 122 KSKD 125 ++++ Sbjct: 143 QTEE 146 >gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] Length = 243 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 15 NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 73 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 74 IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 130 Query: 120 MQKSKDEN 127 ++N Sbjct: 131 RYTYFNQN 138 >gi|218682484|ref|ZP_03530085.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 430 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD +R+ GF V ++ E P +V D M G+ Sbjct: 5 KILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYS-FPGVVVSDIRMPGMDGM 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + +V V + D + + R GA F+ KPF E L +R + + Sbjct: 64 TLMQKIREIDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAMERRG 123 Query: 123 SKDENQFLDAI 133 EN+ L A+ Sbjct: 124 LVLENRLLKAV 134 >gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555] gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + GF ++++ + +A E E ++D + + F Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESE-QLELAILDVMLPDIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + I G GA+ ++ KPF L ++ + Sbjct: 63 TLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 119 >gi|94501162|ref|ZP_01307685.1| DNA-binding response regulator [Oceanobacter sp. RED65] gi|94426738|gb|EAT11723.1| DNA-binding response regulator [Oceanobacter sp. RED65] Length = 247 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ V + + G+ + A + KE + +++D + + Sbjct: 14 KRILIIEDDRSVNDLLCGNLSKKGYQIEAAFDGDRGLKKAIKED-FDIILLDVMLPKIDG 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + V L + E I G ++GA+ +L+KPF+ L ++ + + Sbjct: 73 L-KLLTLLRSEKQTPVLMLTAKGGEEDRIYGFKSGADDYLIKPFSMTELDLRIKAILRRT 131 Query: 122 KSKDE 126 + + E Sbjct: 132 QIQRE 136 >gi|83643354|ref|YP_431789.1| CheY-like receiver protein [Hahella chejuensis KCTC 2396] gi|83631397|gb|ABC27364.1| FOG: CheY-like receiver [Hahella chejuensis KCTC 2396] Length = 120 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ G+ V EA + EA + + ++ D +M + Sbjct: 1 MAKILAVDDSASMRQMVTFTLKGAGYQVDEAANGQEALSKAKSGKY-DLVITDVNMPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I ++R + L E +K G AGA +++KPFN + L ++++ Sbjct: 60 GISLIKNLRAEGAYKFTPLLMLTTESGADKKAEGKAAGATGWIVKPFNPDQLVATVKKVL 119 >gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K G+ + + + +++D + + Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDY-DVILLDLMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + ++G GA+ +L+KPF E L +R L + Sbjct: 60 GLEVARRLREV-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118 Query: 121 QKSKDE 126 + E Sbjct: 119 IAIETE 124 >gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437] Length = 237 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 8/131 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++L VD + + R F + F V A + EA + + + +++++D + G+ Sbjct: 12 MRTILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSV-DFVILDIMLPGL 70 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +RQ V + L + G GA+ +L KPF+ L ++ Sbjct: 71 DGMETCRRIRQQ---HTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAH 127 Query: 118 PQM-QKSKDEN 127 + ++ K E Sbjct: 128 FRRVERMKREM 138 >gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 226 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 1 MK-ILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 59 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 Query: 121 Q 121 Sbjct: 118 H 118 >gi|289767250|ref|ZP_06526628.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] gi|289697449|gb|EFD64878.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] Length = 1333 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + E +++D M + Sbjct: 1213 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1272 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R++P ++ + + + +GA+ ++ KP + + L +R Sbjct: 1273 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1331 >gi|257790764|ref|YP_003181370.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474661|gb|ACV54981.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 235 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + ++ + D G+ A E E+E P+ +++D M + Sbjct: 1 MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAERE-APDLVIMDVMMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F G V +L + D G +AG + +++KPF+ L + + Sbjct: 60 GFTTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRR 119 >gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R + G++V + E E + LV+D + G Sbjct: 1 MMRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEY-DLLVLDVMLPGQD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V +L D + G GA+ +L KPF+ L ++ + + Sbjct: 60 GWT-LLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRR 118 Query: 121 QKSKDENQFLDA 132 + +D N A Sbjct: 119 GQPRDSNTLRAA 130 >gi|330006922|ref|ZP_08305793.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS 92-3] gi|328535638|gb|EGF62088.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS 92-3] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 + LV+ + ++ GF V A E P+ ++D + + F Sbjct: 5 RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAA-AHQAPDVAILDVGLPDISGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + V +L D + G GA+ ++ KPF+ + +R + + Sbjct: 64 ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121 >gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007] Length = 290 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ ++ G+++ + + K+ +++D + G+ Sbjct: 38 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L + + G +GAN +L+KPF+ L +R + Sbjct: 96 GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 Query: 121 QKSKD 125 + + Sbjct: 155 HHALN 159 >gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 315 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD V ++ GF V A + A E P +++D M G+ F Sbjct: 14 VLIVDDVPDNLAVLHDALDESGFTVLVANNGEAALVAAI-EAQPGIILLDAIMPGMDGFE 72 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + ++ + E ++A +AG ++ KP + + Q Sbjct: 73 VCRKLKADINTRHIPIIFMTGLTESEHVVAAFQAGGTDYITKPIRAIEVLARIDAHMQTS 132 Query: 122 KSKDENQ-FLDA 132 + ++ + LDA Sbjct: 133 RLMNQARGALDA 144 >gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 226 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ R ++ G++V A + E E + L++D + G + Sbjct: 2 RILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDY-DLLILDVMLPGQDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + V +L D + G GA+ +L KPF+ L +R + + K Sbjct: 61 T-LLQNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGK 119 Query: 123 SKDENQF 129 ++ Sbjct: 120 PRESMSL 126 >gi|260170293|ref|ZP_05756705.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1464 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1263 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1264 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1324 RKLFRERIRQQMENQ 1338 >gi|253567761|ref|ZP_04845172.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841834|gb|EES69914.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1420 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 4/129 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+V+ + +R R + + + V EA + EA ++++ D M + Sbjct: 1170 LVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNP-IDFIISDLMMPVMDGIEL 1227 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V++ + + L + E + R G + +LLKPF+ L ++ + + +K Sbjct: 1228 SRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILENRK 1287 Query: 123 SKDENQFLD 131 LD Sbjct: 1288 RYQRKFTLD 1296 >gi|229118514|ref|ZP_04247867.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228664895|gb|EEL20384.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] Length = 231 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V E + +A E E+ + + +++D + G+ Sbjct: 1 MTTILVLEDDITIRSFITLNMQRAGFNVLETDTGEKALELLEQNNV-DIVILDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ + L V + + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFRVCKSIRKNNE--DIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLL 117 Query: 119 QM-QKSKDENQFL 130 + QK+K E + + Sbjct: 118 RRIQKNKKELELI 130 >gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 799 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLLV+ + +V + ++V AT E E + +++D + + Sbjct: 1 MK-LLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEM-FEYDLIMLDLMLPKLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F R+ G + + + D + AGA+ +L+KPFN + L +R L Sbjct: 59 GIQFCQQRRK--KGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++VD + K+ + +GF + + E+ P+ L++D M + Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTT-PDLLILDVEMPEISGI 557 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 E VR P + + +L + + + G +AGA+ ++ KP L + Sbjct: 558 ELCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 65.2 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 7/120 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG----V 59 LL+VD+ I+ + + +G + AT + +A+E + P+ +++D Sbjct: 375 LLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARS-RPDVILLDMGFPDREEIC 433 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE + +RQ+ + + +F + AR GA FL KP E + + ++ Q Sbjct: 434 LELLKDIRQL--IPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPERIIETIVKVVQ 491 >gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 567 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +LLVD R + +G+ + EAT+ EA E+E + +++DE M G+ +E Sbjct: 445 ILLVDDDVFNRTIIGAWLRRWGYRLREATNGKEALAVLEEE-RFDLILMDEQMPGMSGIE 503 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R ++ V + AG N +L KPF+ L +R Sbjct: 504 TVDRIRADARWKNIPVIAVTANAMKGDRERFLAAGMNDYLSKPFSPADLLHVVR 557 >gi|167628686|ref|YP_001679185.1| two component diguanylate cyclase [Heliobacterium modesticaldum Ice1] gi|167591426|gb|ABZ83174.1| two component diguanylate cyclase [Heliobacterium modesticaldum Ice1] Length = 324 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L++D + R + + GF V+ S EA + + +++D M G +E Sbjct: 3 ILIIDDAEDTRLYLQAVLASDGFEVYATASAQEALAHLQDRPSIDLILLDVIMPGIDGIE 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 ++ DV V + + E + AGA +++KP + L +R + Sbjct: 63 LCQQIKSDAAWRDVPVIMVTALTNIEDLDRAFAAGAMDYIMKPVKKRELLARIRSALALK 122 Query: 121 ----QKSKDENQFL 130 ++ + E + L Sbjct: 123 TEMDRRKEREEELL 136 >gi|162147183|ref|YP_001601644.1| regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544237|ref|YP_002276466.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785760|emb|CAP55331.1| putative regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531914|gb|ACI51851.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 263 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 10/127 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ +R + + G+ V E + +V+D + G L Sbjct: 20 RILVVEDDPGMRTLLVRVLQGDGYRVRGVQDGREMWSALATSPA-DLIVLDVMLPGTNGL 78 Query: 61 EFIAHVRQ-------MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + +R+ + + V + + + G GA+ ++ KPF ++ L Sbjct: 79 DLCRSLRRGGVPVDGVVPDPQIPVIMVSARGEELDRVVGLELGADDYVAKPFGQKELLAR 138 Query: 114 MRELPQM 120 +R + + Sbjct: 139 VRAVLRR 145 >gi|121997014|ref|YP_001001801.1| response regulator receiver protein [Halorhodospira halophila SL1] gi|121588419|gb|ABM60999.1| response regulator receiver protein [Halorhodospira halophila SL1] Length = 395 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 14/142 (9%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD I ++ L D + V A S +A + +E LP+ +++D +M G + Sbjct: 14 VLVVDDEPINLELLGRLLGDA-YRVLVARSGEQALDIVARERLPDLVLLDITMPGISGYD 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 + ++ P V V ++ D+E G GA ++ KPFN +R + ++ Sbjct: 73 VLDALQGEPRTRGVPVIFISARGDWEDEADGLARGAVDYITKPFNSAVVRARVGAHVKLK 132 Query: 121 ----------QKSKDENQFLDA 132 ++ + + Q ++ Sbjct: 133 VRSDLLAANYRQLEAQQQRIEE 154 >gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 234 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + + + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAY-DLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|257785036|ref|YP_003180253.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473543|gb|ACV51662.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + L + V T A + + + ++D M + F Sbjct: 2 RVLLAEDEKRMAAAIVALLKQEKYDVDHMTDGASAL-LALESNMYDIAILDVMMPKMSGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + + L + + + G GA+ +L KPF L +R L + Sbjct: 61 EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRSS 120 Query: 123 SKDEN 127 S EN Sbjct: 121 SFQEN 125 >gi|291456488|ref|ZP_06595878.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM 20213] gi|291381765|gb|EFE89283.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM 20213] Length = 240 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A A + +L P+ +++D + + Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAAL-QLKPDLVIMDIMLPVMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R + V V L D + G AGA+ ++ KPF+ L + L + Sbjct: 72 LEATKRIVAERP-VPVLILTARDDETDKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130 Query: 122 KSKD 125 + Sbjct: 131 ERAK 134 >gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL++ + + GF V E E E + +++D + + Sbjct: 4 RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSE-QWDLILLDVMLPSLNGM 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + + G GA+ +++KPF E L +R L + Sbjct: 63 EVCRRIRA---AKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119 Query: 121 QKSKDENQFL 130 + Q L Sbjct: 120 VHPEANAQVL 129 >gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 887 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + VR + R G+ + EA + + + ++L P+ +++D M G+ F Sbjct: 13 ILVVDDAKTVRALLREHLESVGYQLAEAVNGEDCLKSF-QQLRPDIVLLDAVMPGMDGFN 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A +R++P G D + + D + AGA ++ KP + LR + L + Sbjct: 72 CCARLRRLPQGMDTPILMITGLDDPSSVERAFAAGATDYITKPIHWAVLRMRVSRLIEAS 131 Query: 122 KSKDENQFLDA 132 ++ + + A Sbjct: 132 RAMIKLRQQSA 142 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 4/117 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + + +KV HL G+ A + + E ++ + +++D M + Sbjct: 763 RILLAEDNAVNQKVALHLLKRLGYGADVAKNGIQVLEALRQQSY-DVILMDVQMPEMDGL 821 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R + + A AG + ++ KP L A+++ Sbjct: 822 TATQQIR-RSGLPQPRIIAMTANAVQGDREACLEAGMDDYVSKPIRLPDLVEALQKC 877 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 4/119 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + RK+ +G + + + EA +++ + +ID+ + + Sbjct: 620 KRLLIVDDNPTYRKILSLYSQFWGTLPYTFAAGSEALRRLQQQPGFDLAIIDDRLADMDG 679 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ+P + + +L E++ + + G L KP + L+ A+ +L Sbjct: 680 LSLVEQIRQLPQTATLPLIFLTNTSQRERVASHLQNGL--ILTKPLRQSQLQDALLKLL 736 >gi|315644147|ref|ZP_07897317.1| integral membrane sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315280522|gb|EFU43811.1| integral membrane sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 1048 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 LL+VD + +V + + V ATS E + + + ++ D M + Sbjct: 721 RLLIVDDDPVNLQVLEAILPPDEYDVTMATSGKEVLAVLDAQEW-DLVISDIMMPQMSGY 779 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ T++ V L + + +G AGAN ++ KP +R + L + Sbjct: 780 ELTRRIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPVEAIEIRSRIEALTTI 839 Query: 121 QKSKDENQFLDA 132 +++ E L+A Sbjct: 840 KQTVREQLRLEA 851 >gi|304406061|ref|ZP_07387719.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304345304|gb|EFM11140.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + V + + + +++D + + Sbjct: 2 RLLIVEDEIHLAEALTQILKKQNYSVDAVHDGQAGLDNALSGIY-DLILLDIMLPEMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G V L + + I+G GA+ ++ KPF+ E L +R + + Sbjct: 61 TVLKTMRSKGIATPVILLTAKGEISDKISGLDYGADDYVAKPFSTEELLARIRAALRRK 119 >gi|300867480|ref|ZP_07112131.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300334474|emb|CBN57299.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 378 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 S+L+VD + ++ + + G+ V +A + A +E P +++D M + Sbjct: 12 SILVVDDTPDNVRLLSTILTEEGYQVRKALNGQRALTTI-QEFPPALILLDVMMPDMNGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P + + V +L + G ++ KPF + + + Sbjct: 71 EVCKKLKDSPQTSSIPVIFLSALDHVLDKVKAFEVGGVDYITKPFQEREVLVRVANQLMI 130 Query: 121 QKSKDENQ 128 Q + Q Sbjct: 131 QNQQRLLQ 138 >gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas albilineans GPE PC73] gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas albilineans] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LLV+ +R+ GF V A E + +E+ + +ID + + + Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGL-YMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R G V L ++ + G + GA+ +L+KPF+ E L + L + Sbjct: 61 ELIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118 >gi|34541418|ref|NP_905897.1| DNA-binding response regulator/sensor histidine kinase [Porphyromonas gingivalis W83] gi|34397735|gb|AAQ66796.1| DNA-binding response regulator/sensor histidine kinase [Porphyromonas gingivalis W83] Length = 961 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + + L D + V A + E E +P+ ++ D M + Sbjct: 698 TILLVEDNKDINLLVKLLLCDR-YNVLSAANGKEGIALA-TEHIPDIIITDIMMPIMDGI 755 Query: 63 IAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R Q PL + + L + + + G ++G S+L KPF+ E L + +L + Sbjct: 756 EMTIRMKQSPLLCHIPIVALTAKSTEQDRLEGIKSGVVSYLCKPFSPEELLMRIEQLLKD 815 Query: 121 QKSKDE 126 ++ + Sbjct: 816 RELLKK 821 >gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 5/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + ++ G+ V RE P+ +++D + G+ Sbjct: 1 MPNILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNP-PDLVILDLMLPGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + L D + G GA+ ++ KP L +R L Sbjct: 60 GLQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 117 Query: 119 QMQKS 123 + Sbjct: 118 RRSSL 122 >gi|325123756|gb|ADY83279.1| osmolarity response regulator [Acinetobacter calcoaceticus PHEA-2] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 1/115 (0%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHV 66 VD +R + + D GF+V A + + + L + +V+D + Sbjct: 2 VDDDVRLRTLLQRFLEDKGFVVKTAHDASQ-MDRLLQRELFSLIVLDFMLPVEDGLSICR 60 Query: 67 RQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R D + L IAG AGA+ +L KPFN L +R + + Q Sbjct: 61 RLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 115 >gi|311281631|ref|YP_003943862.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308750826|gb|ADO50578.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L + GF V A +A + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALALLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|293394600|ref|ZP_06638894.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291422909|gb|EFE96144.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 231 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 1/123 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 + LV+ + + GF V A + + P +++D + + F Sbjct: 5 IWLVEDEPSIADTLVYTLESEGFQVRWFERGEPALQAL-AQGEPALIILDVGLPDINGFE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + D+ + +L D + G GA+ ++ KPF+ + +R + + Sbjct: 64 LCRRLLAQSADLPILFLTARSDEIDRLLGLEIGADDYVAKPFSPREVSARVRTILRRLHK 123 Query: 124 KDE 126 + Sbjct: 124 QQR 126 >gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 231 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + + + D + V +A S EA EKE + +++D + + Sbjct: 5 KILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKES-FDLIILDIMLPDIDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R LGT + +L + I G GA+ ++ KPF+ L ++ + Sbjct: 64 DVCRKIRDKFLGT---IIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAHLRK 120 Query: 121 QK 122 QK Sbjct: 121 QK 122 >gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V + G+ A + EA E + +++D + + Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKF-GNGNWDLILLDVMLPNISGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L ++G GA+ ++ KPF E L +R ++ Sbjct: 63 EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122 Query: 123 SKDENQ 128 E Q Sbjct: 123 VVKEEQ 128 >gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + + L GF AT A K + +++D + G+ Sbjct: 1 MATVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKND-IDLVLLDLMLPGMS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ+ + V V + + G GA+ ++ KP++ L +R + Sbjct: 60 GTDVCRRLRQV---STVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|170077481|ref|YP_001734119.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885150|gb|ACA98863.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 266 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ R V GF A++ + E E PN +V D M + Sbjct: 1 MTKILIIEDEAETRNVFLKCLEFEGFKTCAASNALDGIELALNE-QPNLIVCDILMPDMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +R+ P T + +L +V ++ G + GA+ +L KP E A+ Sbjct: 60 GYFVLSKIRRSPKTTAIPFIFLTAKVTMAELRYGMQLGADDYLTKPCTVEQFLGAINVRL 119 Query: 119 QMQKSKDENQFLDA 132 + Q+ EN LD+ Sbjct: 120 KRQQDTIENHHLDS 133 >gi|85058306|ref|YP_454008.1| KDP operon transcriptional regulatory protein [Sodalis glossinidius str. 'morsitans'] gi|84778826|dbj|BAE73603.1| KDP operon transcriptional regulatory protein [Sodalis glossinidius str. 'morsitans'] Length = 241 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++D + + R VFEA ++ P+ +++D + Sbjct: 1 MKTLLIIDDEKHICRFLRASLESDDIKVFEAETLARGLSTA-ASRQPDLVILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-ELPQ 119 +R+ +D + +L V + I AGA+ FL KPF L+ +R + Sbjct: 60 GVT-FIREFRQWSDKPIIFLSARVGEDDKIEALDAGADDFLCKPFGMGELQARVRWRSLR 118 Query: 120 MQKSKDEN 127 ++ E Sbjct: 119 RGENAREQ 126 >gi|150017636|ref|YP_001309890.1| response regulator receiver protein [Clostridium beijerinckii NCIMB 8052] gi|149904101|gb|ABR34934.1| response regulator receiver protein [Clostridium beijerinckii NCIMB 8052] Length = 156 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ I+R+V + G+ V EA +A E + + +++D + + Sbjct: 1 MNKILVVEDEDILREVIVDYLIEDGYQVLEAADGEKALELFQSNSV-ELVILDIVLPKID 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + + L D + + G GA+ +L+KP++ L ++ Sbjct: 60 GWSVCRRIRKNSS---IPIIMLTARSDEDDSLMGYELGADDYLIKPYSPRILMVKVKRFL 116 Query: 119 QM 120 + Sbjct: 117 EK 118 >gi|315606849|ref|ZP_07881858.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] gi|315251514|gb|EFU31494.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] Length = 1298 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D H ++ F V +A + E + LP+ +V D M + Sbjct: 1055 TILVIDDEHDTVELLERNL-AADFKVIKAYDGRQGLEEAAR-TLPDIIVCDLMMPNMDGM 1112 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F+ ++ + V + E MI GA+++L KP + LR + L Sbjct: 1113 EFLHMLKSDKKLAHIKVIIFTAKTSEEDMIEAFDQGADAYLTKPISLRLLRKRIDRLVAQ 1172 Query: 121 QKSKD 125 + + Sbjct: 1173 SNTAE 1177 >gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 226 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D +R + + GF + ++ E++ + + +++D M + Sbjct: 1 MKDRILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEV-DLIILDIMMPQM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + ++ + L + + I+G AGA+ +L KPFN L ++ + Sbjct: 60 NGIDAAFKIREE-KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIR 118 Query: 120 MQKSKDE 126 K +E Sbjct: 119 RYKKYNE 125 >gi|260222272|emb|CBA31670.1| Response regulator mprA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 248 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 1/123 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+V+ ++R G V A+ +A+ E + +V+D + V Sbjct: 16 MAHLLIVEDDELLRDGLCAQLVHAGHSVSSASDGAQAQGLLES-TRFDGVVLDLGLPVVD 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V L + + G AGA+ +L KPFN L ++ + + Sbjct: 75 GIAVLQWIRQRLAALPVLILTARDGVDDRVQGLNAGADDYLTKPFNMAELLARLQAMLRR 134 Query: 121 QKS 123 + Sbjct: 135 SRL 137 >gi|256843524|ref|ZP_05549012.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|293381453|ref|ZP_06627449.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|312978303|ref|ZP_07790046.1| DNA-binding response regulator DltR [Lactobacillus crispatus CTV-05] gi|256614944|gb|EEU20145.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|290921970|gb|EFD98976.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|310894822|gb|EFQ43893.1| DNA-binding response regulator DltR [Lactobacillus crispatus CTV-05] Length = 221 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + +V G+ V + +A E KE + +++D M + Sbjct: 1 MK-ILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHA-KENSYDVIMLDIMMPVMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + G ++ L + + + + G +GA+ +L KPF+ + L +R + Sbjct: 59 GITALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERR 118 Query: 121 Q 121 + Sbjct: 119 E 119 >gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 623 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 3/116 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + G V A S EA + P+ +++D M G+ Sbjct: 495 RVLLVDDNPGNLDMFATYLRIRGCDVRTAGSGAEAI-ALSRMPRPDVILMDVQMPGMDGL 553 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R P V + L AG + +L KP + L + + Sbjct: 554 ETTRRLRSDPALRAVPIIALTALAMPGDREQCLEAGMDDYLTKPLGLKELHATVAQ 609 >gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 236 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 73 HVLQRLRGDNNETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131 >gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803] gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803] Length = 226 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + + + V S +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATY-DLIVLDIMIPGIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 7/130 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M ++L+ D VR++ R G+ V EA + E+E + ++D M G Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESV-QLAIVDVMMPGK 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +R+ D+ V L + + G AG + +L KPF L + ++ L Sbjct: 60 NGWELCREIRE---FYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKAL 116 Query: 118 PQMQKSKDEN 127 + + + Sbjct: 117 LRRYQMVSKQ 126 >gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + GF V A + EA + + +++D + + Sbjct: 4 KILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQK-FEVILLDLMLPKIDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + V V + + + G GA+ ++ KPF+ + ++ + ++ Sbjct: 63 -ECLRMIRSKSMVPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRER 121 >gi|149279746|ref|ZP_01885874.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] gi|149229544|gb|EDM34935.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] Length = 1300 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+LLV+ + + K + + +A EA E EK + +V D M + Sbjct: 1051 SILLVEDHNDILKYISQELRGE-YFILKANDGMEALELLEKHPV-QLVVSDIMMPRMNGL 1108 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + V L + + I G GA++++ KPF+ L ++ L + Sbjct: 1109 DLCRRIKTDLTYSHIPVILLTAKTSVDSRIEGLGTGADAYIDKPFSMSHLEMQIKSLLRN 1168 Query: 121 QKSKDE 126 +K E Sbjct: 1169 RKLVKE 1174 >gi|39996595|ref|NP_952546.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983476|gb|AAR34869.1| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505611|gb|ADI84334.1| sigma-54-dependent transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 458 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 1/127 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R+ L + G+ V +A S EA E++ + ++ D M G+ Sbjct: 5 VLVVDDELSMREFLAILLDREGYTVDQAASAEEALACLERKTY-DLVISDVKMPGLDGIT 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + D V + E+ + + GA ++ KPF E ++ R + + Sbjct: 64 LLGRIKEMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKILARNALEKRDL 123 Query: 124 KDENQFL 130 K EN L Sbjct: 124 KRENLRL 130 >gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R] gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R] Length = 241 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ + GF A + L P+ +++D + G+ Sbjct: 15 RVLIVEDERPLARMISLYLSKAGFDTTTIHDGAAAPDKV-AHLRPDVVILDLGLPGLDGL 73 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R TD ++ L I G GA+ ++ KPFN L ++ + + Sbjct: 74 EVCKRIRA---FTDCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRR 130 Query: 121 QKSKDE 126 + DE Sbjct: 131 PRKIDE 136 >gi|15614576|ref|NP_242879.1| hypothetical protein BH2013 [Bacillus halodurans C-125] gi|10174632|dbj|BAB05732.1| BH2013 [Bacillus halodurans C-125] Length = 914 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD + V +++ + + TS E + ++ + ++ D M + Sbjct: 587 KILIVDDDAVNLHVLKNIICSEAYTIEAVTSGEEVLDRLDQGW--DLILADVMMPSMSGY 644 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +++ V L E++ G +GAN +L+KP + L+ +R + ++ Sbjct: 645 ELTREIRNQFSISELPVLLLTARGQPEEVYTGFMSGANDYLVKPIDALELKVRIRAVIEL 704 Query: 121 QKSKDENQFLDA 132 + S E ++A Sbjct: 705 KHSIQERLRMEA 716 >gi|115526887|ref|YP_783798.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520834|gb|ABJ08818.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 221 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + G++V EA + E +++D + G+ Sbjct: 2 RVLVVEDDRRIAADLTRGLEAAGYVVEVVGDGEEAWFRGDTEDY-AAIILDLGLPGMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + + G AGA+ +L KPF E L +R + + Sbjct: 61 TVLKRWRSNDRRIPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR 118 >gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 8 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 123 SKDENQFL 130 S Q + Sbjct: 126 SLTTKQTI 133 >gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + ++ R F V S + +E + +++D + + Sbjct: 5 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMNG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 64 FEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 120 Query: 120 MQK 122 + Sbjct: 121 RYE 123 >gi|330817555|ref|YP_004361260.1| response regulator receiver protein [Burkholderia gladioli BSR3] gi|327369948|gb|AEA61304.1| response regulator receiver protein [Burkholderia gladioli BSR3] Length = 324 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + G+ V A S +A C + P+ +++D M G+ F Sbjct: 23 VLIVDDTPDNLALLSDTLRADGYAVLVALSGDDAL-KCLARVTPDVVLLDAMMPGLDGFE 81 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V ++ + E ++ G R G ++ KP E + + Q Sbjct: 82 TCRRLKLDRRHEHLPVIFMTALAESEHVVQGFRVGGIDYVTKPVRPEEVCARIAAHVQRS 141 Query: 122 KSKD 125 +++ Sbjct: 142 RAQR 145 >gi|304392753|ref|ZP_07374693.1| transcriptional regulatory protein ChvI [Ahrensia sp. R2A130] gi|303295383|gb|EFL89743.1| transcriptional regulatory protein ChvI [Ahrensia sp. R2A130] Length = 234 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ LVD + G+ V T A + P+ V D M + Sbjct: 1 MATIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLTA-KRPDLAVFDIKMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L ++ + + Sbjct: 60 GM-ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 118 Query: 121 QKSKDE 126 ++ E Sbjct: 119 TAARAE 124 >gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ + + + + + + V +A + E + +++D M + Sbjct: 2 RILVAEDEIDLAEALKMMLEMQKYSVEMVHDGEDALFYAESTPY-DLILLDVMMPKKSGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R G V L + E + G GA+ +L KPF L ++ L + Sbjct: 61 EVVRELRSN--GIHTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRR 118 >gi|255281631|ref|ZP_05346186.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] gi|255267698|gb|EET60903.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 5/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+ + ++ G+ A +A + E E + +V+D M G+ Sbjct: 1 MFQILVVDDDKNIRRFLCAVLSNAGYRPIGAACAEDALKIME-EKRIDLIVLDVMMPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R D+ V L + E + G AG + ++ KP N E L + L Sbjct: 60 GYAFTKLLR--DCRNDLPVLMLTAKQLPEDLKQGFLAGTDDYMTKPVNEEELLLRIGALL 117 Query: 119 QMQKSKDENQF 129 + + + Q Sbjct: 118 RRARIASDRQL 128 >gi|226325933|ref|ZP_03801451.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758] gi|225205475|gb|EEG87829.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + + G+ V +A EA + ++ + + L++D M + Sbjct: 1 MAKILVCDDDKDIVEAIDIYLTQEGYEVLKAYDGDEAIKVLKRNEV-DLLIMDVMMPRLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRATLKIRENMS-LPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRR 118 >gi|218709130|ref|YP_002416751.1| putative two-component response regulator [Vibrio splendidus LGP32] gi|218322149|emb|CAV18263.1| putative two-component response regulator [Vibrio splendidus LGP32] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + V F G + A + + E + +++D + + Sbjct: 5 MKRVLLVEDNREIAGVLFDYFECIGMELDYADNGELGLQLAL-ENSFDIIILDLMLPRMD 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + L + M+ G GA+ +L KPF+ + L M L + Sbjct: 64 GLTVCNKLRDQGNATPILMLTALDSRDDMLKGFEHGADDYLTKPFDLDILEARMNALVRR 123 Query: 121 QKSK 124 + K Sbjct: 124 YRGK 127 >gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991] gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991] Length = 235 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R+ + G+ V+ A + E +KE + ++D M + Sbjct: 4 NILIVEDEVGIRETISVFMKNQGYHVYVAENGMAGLELLQKED-IHLAIVDIMMPVMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ D+ V +L + + I G GA+ ++ KPF L + + + Sbjct: 63 TMTMKLRENY-DIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQ 121 Query: 123 S 123 Sbjct: 122 Q 122 >gi|156936224|ref|YP_001440140.1| DNA-binding transcriptional regulator CpxR [Cronobacter sakazakii ATCC BAA-894] gi|156534478|gb|ABU79304.1| hypothetical protein ESA_04123 [Cronobacter sakazakii ATCC BAA-894] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L + GF V A +A + + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 226 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD V ++ + V A A E+ + L P+ +++D + + Sbjct: 6 ILVVDDEPDVAQLLSLQLTMEKYRVQIAYDGPTAIEYV-RSLTPDLIILDVMLPAMDGYE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + L + +++++G +GA+ ++ KP++ L +R L + Sbjct: 65 TCRRIRE---FSNVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRR 120 >gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W] gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W] gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 2 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTKQTI 127 >gi|322391284|ref|ZP_08064755.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145888|gb|EFX41278.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + G+ V A E E K + ++ D M + Sbjct: 3 KTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 122 SRGGETEQIE 131 >gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 238 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + ++ + GF+V EA+ A ++ KE + ++D M + Sbjct: 3 KTILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYV-KENHIDLAIVDIMMPKMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++++ + L + I G GA+ F++KPF+ + ++ + Sbjct: 62 Y-QLIKKVRETLKFPILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHLRR 119 >gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L++D +R + + G+ VF+A++ +A E +KE + +V+D M G+ Sbjct: 3 NNILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEE-IHLMVLDIMMPGMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++ + L + + I G GA+ ++ KPFN L +R L + Sbjct: 62 LEVCRRVREKY-NIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRR 119 >gi|261343520|ref|ZP_05971165.1| KDP operon transcriptional regulatory protein KdpE [Providencia rustigianii DSM 4541] gi|282568669|gb|EFB74204.1| KDP operon transcriptional regulatory protein KdpE [Providencia rustigianii DSM 4541] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ +R+ R G+ VFEA + P+ +++D + Sbjct: 6 ILIIEDEKEIRRFVRLALEGEGWKVFEAENCQRGLIEAGT-RQPDLVILDLGLPDGDGL- 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + + L + + +A AGA+ +L KPF L +R + Sbjct: 64 DLIRDLRKWSSIPLIVLSAREEESQKVAALDAGADDYLTKPFGISELLARVRVALRR 120 >gi|237654345|ref|YP_002890659.1| response regulator receiver protein [Thauera sp. MZ1T] gi|237625592|gb|ACR02282.1| response regulator receiver protein [Thauera sp. MZ1T] Length = 121 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S + R + + G+ V A + +A + P+ +++D M G+ Sbjct: 4 RKILVVDDSPVERLALQEVLGRNGYQVLTAENGEQAIAR-SRSDHPDLILMDVVMPGMNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + D+ + + I G R GA +L+KP + + L +R + Sbjct: 63 YQATRTISRDDETRDIPIIMCTSKGQETDKIWGMRQGALDYLVKPVDHDELLARIRAM 120 >gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483] gi|156111849|gb|EDO13594.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483] Length = 1464 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1263 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1264 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1324 RKLFRERIRQQMENQ 1338 >gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] Length = 236 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 131 >gi|89891604|ref|ZP_01203108.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7] gi|89516151|gb|EAS18814.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7] Length = 238 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + F V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLKDYLMMNDFDVVHAKNGMEGFEKFKKDNY-DLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +V + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNEEVPIIFLTAKAMKEDVLRGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124 Query: 122 KS 123 + Sbjct: 125 GA 126 >gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + + G+ V A + + + +E + +++D + G+ Sbjct: 2 RILVVEDEAKTADYLKRGLEESGYRVEVARNGVDG-KHLIEEETFDLVILDVMLPGLDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VRQ V +L E + G GA+ +L+KPF+ L +R L + Sbjct: 61 QLVQVVRQRSA--HTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRR 118 >gi|324114804|gb|EGC08772.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|323135689|ref|ZP_08070772.1| two component transcriptional regulator PhoB, winged helix family [Methylocystis sp. ATCC 49242] gi|322398780|gb|EFY01299.1| two component transcriptional regulator PhoB, winged helix family [Methylocystis sp. ATCC 49242] Length = 247 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + + G+ V + EA E E P+ +++D + G L Sbjct: 19 RILVVEDEASLALLLTYNLEAEGYQVEHVDNGDEA-ELRIAETPPDLVILDWMLPGVSGL 77 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 E +R D+ + L + + + G GA+ +++KPF+ L Sbjct: 78 EICRRLRAREACRDMPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELM 128 >gi|300869422|ref|ZP_07114007.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria sp. PCC 6506] gi|300332552|emb|CBN59205.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria sp. PCC 6506] Length = 237 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 3/117 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LL + + G+ + A + EA + E PN +++D M G+ Sbjct: 119 ILLAEDNEANISTVSSYLKAKGYRIVLAKNGEEAIALAKSEN-PNLILMDIQMPGMDGLE 177 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R P V + L AGAN ++ KP + L +++L Sbjct: 178 AMQQIRLDPKLVKVPIIALTALAMSSDRDRCLAAGANDYISKPVKLKQLAATIQQLL 234 >gi|258625652|ref|ZP_05720531.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603] gi|258581890|gb|EEW06760.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF + EA + +++D M + Sbjct: 1 MAHILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAV--TDQIDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKS 123 ++ Sbjct: 118 TQN 120 >gi|227875996|ref|ZP_03994118.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269977100|ref|ZP_06184074.1| transcriptional regulatory protein WalR [Mobiluncus mulieris 28-1] gi|306819276|ref|ZP_07452986.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307700171|ref|ZP_07637214.1| putative Transcriptional regulatory protein WalR [Mobiluncus mulieris FB024-16] gi|227843420|gb|EEJ53607.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269934931|gb|EEZ91491.1| transcriptional regulatory protein WalR [Mobiluncus mulieris 28-1] gi|304647942|gb|EFM45257.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307614630|gb|EFN93856.1| putative Transcriptional regulatory protein WalR [Mobiluncus mulieris FB024-16] Length = 238 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 7/122 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L+VD + ++ R + G+ V A+S A + P ++D + Sbjct: 9 RRILIVDDEPDILELVRTTLENEGYTQVETASSARAA-GQILRTTKPEAAILDVMLPDGN 67 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ V +L + G GA+ ++ KPF E L + + Sbjct: 68 GFVLCDEIRK---TRDIPVIFLTARDEPTDKFQGLGMGADDYITKPFYPEELALRLAAVL 124 Query: 119 QM 120 + Sbjct: 125 RR 126 >gi|227514219|ref|ZP_03944268.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|227087415|gb|EEI22727.1| response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ A + +A + +++D M + Sbjct: 18 KILIVDDDKEIVQLLEIYARNEGYEPVTAYNGRDAITKLNTMPDISLVILDLMMPEMNGM 77 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +RQ+ + + + L + I G GA+ ++ KPFN + ++ L + + Sbjct: 78 -DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136 Query: 123 SKDEN 127 ++ N Sbjct: 137 NQVTN 141 >gi|160932717|ref|ZP_02080106.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753] gi|156867791|gb|EDO61163.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753] Length = 219 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + K+ + G+ EA E + +++D + G+ Sbjct: 1 MPKILIVEDDQTISKLIAASLSISGYESVPCFDGNEAVHMVRNEE-FDLILLDIMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + G V +L D + G ++GA +++KPF L + + + Sbjct: 60 GFQVMEKIRETG--TPVIFLTAMGDVSDRVKGLKSGAEDYIVKPFEPLELLARIEIVLRR 117 Query: 121 QKSKDEN 127 + +N Sbjct: 118 FNREQKN 124 >gi|156603224|ref|XP_001618796.1| hypothetical protein NEMVEDRAFT_v1g66793 [Nematostella vectensis] gi|156200390|gb|EDO26696.1| predicted protein [Nematostella vectensis] Length = 188 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + + + + A E K + ++D M Sbjct: 4 KKILLVEDDPNFGTILKDYLALHDYNITHAKDGIEGLIEF-KNNDFDLCILDVMMPRKDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + +L + E ++ G +AGA+ +L KPF+ E L F ++ + Q + Sbjct: 63 FSLAADIRATNKEIPIIFLTAKTMKEDVLKGYQAGADDYLNKPFDSEVLLFKIKAILQRK 122 Query: 122 KSKDENQ 128 ++ + Sbjct: 123 ETDKSKE 129 >gi|154492193|ref|ZP_02031819.1| hypothetical protein PARMER_01827 [Parabacteroides merdae ATCC 43184] gi|154087418|gb|EDN86463.1| hypothetical protein PARMER_01827 [Parabacteroides merdae ATCC 43184] Length = 372 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + + G+ + S +A +E PN +++D M + Sbjct: 9 TVLVVDDVPTNVMLVQAILKKEGYTLLTTDSGAKALRIA-QERHPNLILLDIMMPEMDGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117 + H++ P ++ V + D + ++ G + GA ++ KPF RE L + EL Sbjct: 68 EVLQHLKSNPETNNIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVAHRYEL 127 Query: 118 PQMQKSKDENQ 128 +++ K E + Sbjct: 128 FSIKRIKQELE 138 >gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + ++ R F V S + +E + +++D + + Sbjct: 6 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMNG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 65 FEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 121 Query: 120 MQK 122 + Sbjct: 122 RYE 124 >gi|23099970|ref|NP_693436.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778201|dbj|BAC14471.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 8/129 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + +V + G+ V + A + K + P+ +++D + GV Sbjct: 1 MKKILIIEDEYPISQVIKVYLKKAGYDVEQVFDGSNAMDTF-KHVEPDLVILDVMLPGVD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R V L D + G GA+ ++ KPF+ E L ++ + Sbjct: 60 GWTLLQDIRSKCA-----VIMLTALGDVNYRLDGLNQGADDYIAKPFHGEELVARVQAVL 114 Query: 119 QMQKSKDEN 127 + +K+ N Sbjct: 115 RRIGNKNNN 123 >gi|332760947|gb|EGJ91235.1| KDP operon transcriptional regulatory protein kdpE [Shigella flexneri 4343-70] gi|333007932|gb|EGK27408.1| KDP operon transcriptional regulatory protein kdpE [Shigella flexneri K-218] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 234 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + + + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAY-DLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|320329810|gb|EFW85798.1| sensory box protein/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 705 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S E + P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L + ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073503|gb|ADJ62902.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + ++ R GF AT V +AR+ E LP+ +++D + Sbjct: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHI-AESLPHVVLLDWMLPDSSGLV 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R+ + V L + E + G GA+ ++ KPF+ + L ++ L + + Sbjct: 67 LLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRK 126 >gi|254784921|ref|YP_003072349.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237685780|gb|ACR13044.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 300 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 7/139 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + D GF V A + E + KE P+ +++D M G Sbjct: 1 MTKVLVVDDVEDNIVLLTFELEDEGFEVIAAHNGRECLDLVHKEW-PDIILLDIRMPGIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + ++ D+ V + ++ GA+ F+ KP L MR Sbjct: 60 GLETLEQLKADESTRDIPVVMVSANTGDNSIVRALDMGAHDFVCKPIEYPVLSARMRSAL 119 Query: 119 Q----MQKSKDENQFLDAI 133 + + N+ L+ + Sbjct: 120 RLVNARRALVRANEELERL 138 >gi|153870478|ref|ZP_01999872.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073055|gb|EDN70127.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 402 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 3/115 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 ++LLVD +V + + G+ + TS A + + LP+ +++D M + Sbjct: 7 NILLVDDIPTNLQVLTQMLTEHGYKIRPTTSGQLALKSAQF-TLPDLVLLDIQMPEMNGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 E ++ D+ V ++ + + G ++ KPF E + + Sbjct: 66 EVCEKLKADEKTCDIPVIFISALSEVFDKVKAFSVGGVDYVTKPFQAEEVLARVE 120 >gi|170020961|ref|YP_001725915.1| DNA-binding transcriptional activator KdpE [Escherichia coli ATCC 8739] gi|169755889|gb|ACA78588.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|110834570|ref|YP_693429.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110647681|emb|CAL17157.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] Length = 222 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ S + + + G+ V +A + + +++D + G+ Sbjct: 2 RILLVEDSIALADQLMPMLREHGYAVDWLADGRDALPALNDDP-FDLVILDLGLPGLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V V L + + I G ++GA+ +L KPF+ + L ++ L + Sbjct: 61 QVLEQWRVEGQAVPVLILTARDSWAERIEGLQSGADDYLAKPFHPDELLLRVQALLRRTH 120 Query: 123 SKDENQFLDA 132 + L A Sbjct: 121 GRANTSQLTA 130 >gi|81300624|ref|YP_400832.1| response regulator receiver domain-containing protein [Synechococcus elongatus PCC 7942] gi|81169505|gb|ABB57845.1| response regulator receiver domain protein (CheY-like) [Synechococcus elongatus PCC 7942] Length = 411 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+ + + I R V G V S EA ++ + L +D M G Sbjct: 174 RLLVAEDNEINRDVLERRLRRLGHDVVCVASGQEALNQLAQQP-FDLLFLDVMMPGLTGF 232 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + ++ P ++ V + D E +I R GA +L KPF L+ + Q Sbjct: 233 EVLQQLKADPTLAELPVLMISALDDLESVIRCLRLGATDYLTKPFEPTLLQTRLETCLQH 292 Query: 121 QKSKDEN 127 ++ +D Sbjct: 293 KRLRDRE 299 >gi|310823306|ref|YP_003955664.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309396378|gb|ADO73837.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 397 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D RK+ L + + ATS E +E P+ +++D M G+ Sbjct: 20 RQVLIADDDAASRKIAAALLAASDYRIRFATSGEETLAAVGEE-RPDLVLLDVMMPGLDG 78 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ G + + + ++ G +AGA+ FL KP + LR + L + Sbjct: 79 FEVCRRLRERLSGEYIPIILVTSLDGRSDVVQGLKAGADDFLHKPVHGAELRARVSNLLK 138 Query: 120 MQKSKDENQFLDA 132 ++ Q L A Sbjct: 139 VRAYH---QLLAA 148 >gi|294667833|ref|ZP_06733043.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602459|gb|EFF45900.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + V + G+ +A + P+ +++D + G L+ Sbjct: 10 VLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQ-QPDLVLLDLMLPNRGGLD 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V V + V+ + G GA+ ++ KPF+ + ++ + + Sbjct: 69 ICRDLRKESA---VPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRH 125 Query: 122 K 122 + Sbjct: 126 R 126 >gi|297196322|ref|ZP_06913720.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197722900|gb|EDY66808.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1150 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 2/123 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD L G V A + E +V+D M G Sbjct: 1028 RTVLVVDDDTRNVFALTELLEHEGVHVITADNGRTGIELVRTRHDIGLVVMDVMMAGTDG 1087 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R++P DV + + + AGA+ ++ KP + + L +R + Sbjct: 1088 YSAMQAIRKLPHAADVPIIVVTAKAMAGDRAEALAAGADDYVSKPVDTDRLVAKIRLWLE 1147 Query: 120 MQK 122 + Sbjct: 1148 QGR 1150 >gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187] gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1] gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187] gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1] gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 234 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++++VD +R++ + G+ V +A E E +K + + +V+D M + Sbjct: 5 TIMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEV-HLIVLDIMMPKIDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR++ + + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREIAE---MPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|146343754|ref|YP_001208802.1| chemotaxis protein CheY [Bradyrhizobium sp. ORS278] gi|146196560|emb|CAL80587.1| Chemotaxis protein cheY [Bradyrhizobium sp. ORS278] Length = 129 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + L+VD S +VRK+ R + + GF V EA +A E C K LP+ +++D +M + Sbjct: 1 MKTCLVVDDSSVVRKIARRILEELGFSVVEAEDGEQALELCTKS-LPDAILLDWNMPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F+ +R++P G V + E D + + AGAN +++KPF++E + +E+ Sbjct: 60 GYDFLGRLRRLPGGDGPKVVFCTTENDIDHISRALNAGANEYIMKPFDKEIVAAKFQEVG 119 Query: 119 QMQKSKDE 126 +Q E Sbjct: 120 LIQALSAE 127 >gi|305016|gb|AAB03045.1| similar to S. typhimurium OmpR [Escherichia coli str. K-12 substr. MG1655] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF V A +A + + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + Sbjct: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILXR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLVD + + + G+ V A +A + + ++ D M + Sbjct: 1 MTYKILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKF-NQYQYDLIISDIMMPNM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + + ++ +V I GA+ F+ KPF+ L ++ + Sbjct: 60 DGYDFIGEVLLAKPNQPFLFITAKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILN 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|254448684|ref|ZP_05062142.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] gi|198261692|gb|EDY85979.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] Length = 244 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S+L+V+ + GF A A + + +V+D + G Sbjct: 19 SILIVEDHQDLAANIGDYLEAGGFAPDFAADGPSAVNLAAENPY-DAIVLDIMLPGFDGY 77 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + V + L + I G GA+ +L+KPF + L ++ + Sbjct: 78 EVCRRLRQQVGLS-VPIIMLTARDQLDDKILGFEQGADDYLIKPFEMKELEARLKAHIRR 136 Query: 121 QKSKDENQFLD 131 + + E L Sbjct: 137 NRGELEGNTLQ 147 >gi|182413825|ref|YP_001818891.1| response regulator receiver protein [Opitutus terrae PB90-1] gi|177841039|gb|ACB75291.1| response regulator receiver protein [Opitutus terrae PB90-1] Length = 404 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 7/139 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + R+V + V A A + P ++D M G+ Sbjct: 1 MK-ILIADDEPVARRVLMGFLEKEKYEVVVAEDGQAALKLLSAPEAPTIAILDWMMPGLN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R L +V + + + + AGA+ ++ KPFN L +R Sbjct: 60 GLQVCRRIRTTNLKIRPYVMMVSAKSGANDITSALDAGADDYISKPFNPGELMARLRVAR 119 Query: 119 QMQKSKDENQ----FLDAI 133 + + + E Q L+++ Sbjct: 120 RSIEYQVELQNHITQLESL 138 >gi|171060372|ref|YP_001792721.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170777817|gb|ACB35956.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 863 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD ++ + ATS +A + P+ +++D M G+ Sbjct: 10 RILIVDDVPENLHALMNILRS-DHAIVAATSGEKALALARAQPQPDMILLDIKMPGMDGY 68 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++H++ P + V ++ + G + G ++ KP N + LR + ++ Sbjct: 69 SVLSHLKADPATAAIPVIFVTALTEAADEARGLKLGVADYITKPVNPDLLRLRIATQLEL 128 Query: 121 QKSKD 125 ++ + Sbjct: 129 RRHRR 133 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+VD D + + A+S +A + + + P+ +++D M + Sbjct: 151 TLLVVDDVPDNIHELIEALRDE-YRITVASSGPKALQIVQGDDPPDLVLLDIVMPDMDGY 209 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +PLG + V ++ + EK + G GA ++ KPF+ + +R +R ++ Sbjct: 210 EVCRRIKALPLGPRLPVIFVTVVDASEKKVQGFGLGAADYITKPFDIDEVRARVRTHIEL 269 Query: 121 QKSKDENQFLDA 132 + + + L A Sbjct: 270 SRLQRCLEELVA 281 >gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1] gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1] gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 223 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R + + + V EA ++ E + +++D + G F Sbjct: 2 RILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSY-DGVLLDIMLPGKDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +G D + L E + G GA+ +L+KPF E L +R + + + Sbjct: 61 AVLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120 Query: 123 SKDENQF 129 NQ Sbjct: 121 QFVTNQL 127 >gi|87200632|ref|YP_497889.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87136313|gb|ABD27055.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 240 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 S++LV+ +R + + G+ V A + E E E + +V+D + G + Sbjct: 5 SIVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPA-DLVVLDIMLPGTSGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +DV + ++ E + G GA+ +L KPF+ L + + + Sbjct: 64 ELFRRLRRQ---SDVPIIFVSARGSEEDRVLGLELGADDYLPKPFSTRELVARIGAVLRR 120 >gi|329955055|ref|ZP_08296036.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328526345|gb|EGF53360.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 390 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + L + F + A + +A E EKE P+ +++D M Sbjct: 26 KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVEKEH-PDLVLLDVMMPDLSGF 84 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 85 EVAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 144 Query: 121 QKSKD 125 +K Sbjct: 145 VAAKR 149 >gi|312960750|ref|ZP_07775255.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas fluorescens WH6] gi|311284408|gb|EFQ62984.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas fluorescens WH6] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + GF V A + K P+ +++D + + Sbjct: 4 KRILIVEDDADSANILEAYLRRDGFEVALAEDGQRGLD-LHKSWRPDLILLDVMLPRLSG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + +D V + D + + R GA+ +++KP++ + + + + Sbjct: 63 -TEVLSAVRRSSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYSPREVVARVHAVLRRT 121 Query: 122 KSKDENQFL 130 + L Sbjct: 122 TGSQPVEQL 130 >gi|289623551|ref|ZP_06456505.1| sensory box protein/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649158|ref|ZP_06480501.1| sensory box protein/response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330867854|gb|EGH02563.1| sensory box protein/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 705 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S E + P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L + ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260622611|gb|EEX45482.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1476 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1218 TLLLVEDNRDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLSE 1335 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1336 RKLFRERIRQQMENQ 1350 >gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652] Length = 223 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G++V +A E F + +++D + + Sbjct: 2 RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G V V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118 >gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ ++++ + D G+ V A + + K P+ +++D + + Sbjct: 1 MKTILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGN-PDLILLDIMLPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ + V + E + G + ++ KP + + + + Sbjct: 60 GYTVCEMIRQESE---IPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVI 116 Query: 119 QMQKSK 124 + ++K Sbjct: 117 RRYENK 122 >gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 236 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 73 QVLQRLRADNNTTPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131 >gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 222 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ GF A+ EA ++E + + ++D M + Sbjct: 2 RILVVDDDAFIRKLIGIHLKKEGFEALFASDGMEALNLLQQEPV-DLAIVDVMMPKMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +G V V L + + G AGA+ +++KPF + L F +R + + + Sbjct: 61 TLTKNLVEIG--VPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRRFQ 118 Query: 123 SKDENQ 128 + +Q Sbjct: 119 KTERSQ 124 >gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein [polymorphum gilvum SL003B-26A1] gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein [Polymorphum gilvum SL003B-26A1] Length = 305 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD S G V ATS A E+ + P+ +++D M + F Sbjct: 11 VLVVDDSPETLGFLTQALERSGVTVLVATSGQAALSVAER-VTPDMVLMDAVMPEMDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P V V ++ + E ++ +G FL KP N + L+ +R Sbjct: 70 TCRRIKTRPALQHVPVIFMTGLSETEHVVHALESGGVDFLTKPINIDELQARIRVHLANA 129 Query: 122 KSKDENQF-LDA 132 + + LDA Sbjct: 130 RQVQSARIALDA 141 >gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 236 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L V+ ++R+ + GF+V A E + P+ ++D + G+ Sbjct: 4 THVLFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRAD-RPDIALLDVMVPGLDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 63 VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271] Length = 236 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L+KPF + L +R L + Sbjct: 73 QVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130 >gi|163815933|ref|ZP_02207303.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759] gi|158448743|gb|EDP25738.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ I+ + G+ V A S EA E + +++D ++ Sbjct: 1 MKRILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCL--EHGFDLILLDRNLPDGR 58 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L++ +R+ V + +L MI G RAG + ++ KPF+ E L + + Sbjct: 59 GLDYCRELRKSTK---VPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVL 115 Query: 119 QMQKS 123 + ++ Sbjct: 116 RRSEN 120 >gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3] gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++LL++ +R + R F GF + EA E F + +++D M Sbjct: 7 KNILLIEDETRIRFLLRDYFLKEGFNIIEAADGDEGLNFFISNK-IDLVILDIMMPKVDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +R++ + V V L + E + G GA+ ++ KPF+ + L ++ L + Sbjct: 66 ITVLEMIRKV---STVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALLK 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 246 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + +V G+ + A A +ELLP+ +V+D + F Sbjct: 20 RVLVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAA-RELLPDAVVLDVMLPDTDGF 78 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + DV V +L E I G AG + ++ KPF+ E + +R L + Sbjct: 79 AVLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRRAG 138 Query: 123 SKDEN 127 + Sbjct: 139 LARQL 143 >gi|218261992|ref|ZP_03476633.1| hypothetical protein PRABACTJOHN_02304 [Parabacteroides johnsonii DSM 18315] gi|218223650|gb|EEC96300.1| hypothetical protein PRABACTJOHN_02304 [Parabacteroides johnsonii DSM 18315] Length = 372 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + + G+ + S +A +E PN +++D M + Sbjct: 9 TVLVVDDVPTNVMLVQAILKKEGYTLLTTDSGAKALRIA-QERHPNLILLDIMMPEMDGY 67 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117 + H++ P ++ V + D + ++ G + GA ++ KPF RE L + EL Sbjct: 68 EVLQHLKSNPETNNIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVAHRYEL 127 Query: 118 PQMQKSKDENQ 128 +++ K E + Sbjct: 128 FSIKRIKQELE 138 >gi|254391838|ref|ZP_05007033.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|294815467|ref|ZP_06774110.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] gi|197705520|gb|EDY51332.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|294328066|gb|EFG09709.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] Length = 1804 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1684 KVLIVDDDIRNVFALTSVLEQQGLTVLYAENGREGIEVLEQHDDVQVVLMDIMMPEMDGY 1743 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1744 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWVRA 1803 Query: 121 Q 121 + Sbjct: 1804 R 1804 >gi|146313692|ref|YP_001178766.1| DNA-binding transcriptional regulator CpxR [Enterobacter sp. 638] gi|145320568|gb|ABP62715.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L + GF V A +A + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLDMEGFNVIVAHDGEQALSLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQ---TYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|118445101|ref|YP_879164.1| two-component response regulator [Clostridium novyi NT] gi|118135557|gb|ABK62601.1| two-component response regulator [Clostridium novyi NT] Length = 231 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + K + + F V +A S + + E P +++D + G+ F Sbjct: 6 KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTEN-PIVVILDIMLPGIDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + L I G GA+ +++KPFN L + L + Sbjct: 65 KVCEILRKN--YPSIGIIMLTALGQDIDKIKGLENGADDYMIKPFNPLELAARITSLIRR 122 >gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 243 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD VR GF V A + EA E + LV+D M + Sbjct: 18 RTVLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESH-DALVLDVQMPELDG 76 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 LG D+ + L IAG AGA+ +L KPF+ L + L + Sbjct: 77 VAVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRA 136 Query: 122 KSKDE 126 D Sbjct: 137 HHSDR 141 >gi|26988605|ref|NP_744030.1| histidine kinase [Pseudomonas putida KT2440] gi|24983381|gb|AAN67494.1|AE016376_4 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 785 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G V AT EA E +E + +++D +M + + Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREE-FDLVLMDCNMPVMDGY 723 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +RQ ++ + L E+ AG N +L KPF RE L + Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALV 777 >gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 4/127 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+ + + + GF V A EA E + + + +++D M Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGA-DLIIMDLMMPR 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++++ + V + L + + + G GA+ ++ KPFN L + Sbjct: 60 LSG-EEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNL 118 Query: 119 QMQKSKD 125 + S D Sbjct: 119 RRYHSYD 125 >gi|283852211|ref|ZP_06369484.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283572437|gb|EFC20424.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 305 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD S + F V ATS EA + E P+ +++D M + Sbjct: 9 RVLVVDDSPSHLAILTESLRSE-FDVRVATSGAEALRLVD-ETPPDLILLDILMPDMDGY 66 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ V +L + D G GA +++KP ++ +R ++ Sbjct: 67 EVCRRLKADFATRNIPVIFLTAKNDVADETQGLAIGAVDYIIKPVTVPIVQARVRTHVEL 126 Query: 121 QKSKDENQFLD 131 ++ D + L Sbjct: 127 KRRGDLLETLS 137 >gi|269958888|ref|YP_003328677.1| response regulator [Anaplasma centrale str. Israel] gi|269848719|gb|ACZ49363.1| response regulator [Anaplasma centrale str. Israel] Length = 456 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD K+ + + V A S EA + +E P+ +++D M G+ Sbjct: 4 RILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLA-REKHPDLILLDVMMPGMDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R P T + V + + + G +GA+ FL KP N L +R L + Sbjct: 63 ETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISSGADDFLTKPINDVALFSRIRSLTR 122 Query: 120 MQKSKDENQF 129 + DE + Sbjct: 123 FKILVDELRL 132 Score = 56.0 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 41 CEKELLPNYLVIDESMEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGA 97 + + ++D + G ++ R + LL E D +++ G Sbjct: 195 FQNAESYDLFIVDLNF-GGDGLRLCSNFRSNNNTRYTPILVLLDESDDTEILSRAFEIGI 253 Query: 98 NSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129 + +++ P + L + ++ +D + Sbjct: 254 SDYIMAPIDSNELLARANVQVKRKRYQDALRM 285 >gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1511 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + ++V R L G+ V A + A E ++ + + +D M + Sbjct: 1172 RLLVVEDNEVNQQVARELLTQAGYTVDVAENGEVALEMVQRTPY-DLVFMDMQMPVMDGL 1230 Query: 63 IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R++P + + + + AG N F+ KP + + L + Sbjct: 1231 AATIAIRKLPGFAALPIVAMTANAMRQDREKCLAAGMNDFVAKPIDPQALFAVLTAWIAP 1290 Query: 121 QKSKD 125 + +D Sbjct: 1291 KAGQD 1295 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 11/137 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESME 57 +L+VD + R V + F V A S EA E K +++D M Sbjct: 1025 RRVLVVDDNESARTVLTDMLAAMSFSVEAAASGQEALSVLEAARGKNQPFEVVLLDWQMP 1084 Query: 58 GVLEFIAHVRQMPLGTDVF--VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ R + + E + G + LLKP L + Sbjct: 1085 GMDGLETAERIRAKFDAPPPHLVMVTAFGREEVLRGAEDGGFEAVLLKPVTPSLLFDTLM 1144 Query: 116 ELP-----QMQKSKDEN 127 + +++ D Sbjct: 1145 RALGGFHEERRQAPDAQ 1161 >gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATY-DLIVLDIMIPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|163803007|ref|ZP_02196893.1| putaive two-component response regulator [Vibrio sp. AND4] gi|159173181|gb|EDP58010.1| putaive two-component response regulator [Vibrio sp. AND4] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + F G + A + + E + +++D + + Sbjct: 1 MKRVLLVEDNREIAGMLFDYFEYAGMELDYADNGELGLKLAM-ENAFDIILLDLMLPRMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + M+ G + GA+ +L KPF+ + L M L + Sbjct: 60 GLALCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMTALIRR 119 Query: 121 QK 122 + Sbjct: 120 YR 121 >gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R G V A + + + +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLL-REQRPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 RRGEREA 123 >gi|329907282|ref|ZP_08274600.1| Two-component response regulator [Oxalobacteraceae bacterium IMCC9480] gi|327547047|gb|EGF31933.1| Two-component response regulator [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 2/131 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + + GF F A++ E R+ + + +V+D ++ G Sbjct: 5 TQILVVDDDRDIRTLLADYLDGNGFRTFTASNGTEMRKMLDTA-RIDLVVLDLTLPGEDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + + V L + I G GA+ +L KPF L +R + + Sbjct: 64 LTLC-RNLRAQSSLPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRT 122 Query: 122 KSKDENQFLDA 132 + N L Sbjct: 123 NALPPNMALSE 133 >gi|319954538|ref|YP_004165805.1| transcriptional regulator, crp/fnr family [Cellulophaga algicola DSM 14237] gi|319423198|gb|ADV50307.1| transcriptional regulator, Crp/Fnr family [Cellulophaga algicola DSM 14237] Length = 350 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++LL++ +R+ L + G+ V A + KEL+P+ ++ D M Sbjct: 1 MKTILLIEDDRALRENTEELLDLAGYAVTTAPNGKIGI-LAAKELVPDIILCDIMMPEVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + + + +L + + +++ G GA+ +L KPF E L A+ Sbjct: 60 GYGVLKALNEDKITKQIPFIFLSAKTEHKEIRKGMDLGADDYLTKPFEEEDLISAIESRL 119 Query: 119 QMQKSKDEN 127 + N Sbjct: 120 AKHEILKLN 128 >gi|262401977|ref|ZP_06078542.1| copper-sensing two-component system response regulator CpxR [Vibrio sp. RC586] gi|262351949|gb|EEZ01080.1| copper-sensing two-component system response regulator CpxR [Vibrio sp. RC586] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF + +A E + +++D M + Sbjct: 1 MAHILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKS 123 ++ Sbjct: 118 TQN 120 >gi|238755039|ref|ZP_04616387.1| Response regulator receiver modulated diguanylate cyclase [Yersinia ruckeri ATCC 29473] gi|238706743|gb|EEP99112.1| Response regulator receiver modulated diguanylate cyclase [Yersinia ruckeri ATCC 29473] Length = 315 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD I ++ F+ + V ATS +A + C + P+ +++D M G+ F Sbjct: 5 KILIVDDHPINIQILYQAFS-ADYHVCMATSGKQAIDVCINQH-PDLILLDIEMPGMNGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ P D+ + ++ +D E GA F+ KP NR T+R ++ + Sbjct: 63 DVCARLKSSPDTQDIPIIFITAHIDEETETRCFNEGAVDFISKPINRNTVRARVKTHLLL 122 Query: 121 QKSKDENQFL 130 + D + L Sbjct: 123 KAQSDLLREL 132 >gi|182678198|ref|YP_001832344.1| response regulator receiver modulated diguanylate cyclase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634081|gb|ACB94855.1| response regulator receiver modulated diguanylate cyclase [Beijerinckia indica subsp. indica ATCC 9039] Length = 457 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + K+ F V AT+ +A CE + +++D M G+ F Sbjct: 4 RILVVDDNPLNLKLLEARLTAEYFTVTTATNGFDALAICEAGGC-DIVLLDVMMPGLDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++Q P + V + +AG AGA+ FL KP + L +R L ++ Sbjct: 63 NVCRHIKQSPNTMHISVVIVTSLDQTADRLAGLEAGADDFLNKPIDEIALIARVRSLARL 122 Query: 121 QKSKDENQF----LDAI 133 DE + L AI Sbjct: 123 HLVLDELRRRTQNLAAI 139 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 10/130 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLV+ + + D + + + + P+ +I + Sbjct: 155 VLLVEDRVSTIERVQAALEDL-YPLEIVSDPGLVLSR-GENNPPDLCIISLGLADYDGLR 212 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIA---GARAGANSFLLKPFNRETLRFAMRELP 118 + +R + LL V+ E G N +L++PF+ L R Sbjct: 213 LCSQLRTGERTRNS---MLLALVEREDRQRLLTALDLGVNDYLIRPFDNHELIARTRTQM 269 Query: 119 QMQKSKDENQ 128 ++ D + Sbjct: 270 LRKRYVDRLR 279 >gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G++V +A E F + +++D + + Sbjct: 2 RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPDLDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 123 SKDENQFL 130 ++ + Sbjct: 121 GHSSSEII 128 >gi|188583239|ref|YP_001926684.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179346737|gb|ACB82149.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 240 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + V A E + + + +V+D + G Sbjct: 10 ILVVEDDREISALVARYLRANECRVSLAGDGRE-MDRVLADARVDLIVLDLMLPGEDGLS 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V + L + + I G GA+ +L KPFN L +R + + + Sbjct: 69 LCRRLRAS---SQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRK 125 Query: 122 KSKDEN 127 ++ ++ Sbjct: 126 GAEPQD 131 >gi|89901044|ref|YP_523515.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89345781|gb|ABD69984.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 853 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ D + + A + +A E + P+ +++D M G+ Sbjct: 9 ILIVDDVNENLHALMNILRD-DYAILAANTGEKALELARRVPQPDLILLDIKMPGMDGYS 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +AH++ P D+ V ++ D G G ++ KP N + L +R ++Q Sbjct: 68 VLAHLKADPKTADIPVIFVTALADAADEARGLTLGVADYITKPVNPDLLHLRVRIQLELQ 127 Query: 122 KSKDE 126 + + + Sbjct: 128 RHRRQ 132 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 SLL+VD + + + A S +A E + P+ +++D M G+ Sbjct: 147 SLLVVDDVPENIHELLDALKEE-YRIMVANSGPKALELVQGPTPPDLVLLDIVMPGMDGY 205 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ G + V ++ + ++ + G GA F+ KPF+ + +R +R ++ Sbjct: 206 EVCQRIKASAAGNGIPVIFVTVVDATDQKVKGFDLGAADFISKPFDIDEVRARVRTHLEL 265 Query: 121 QKSKDENQFLDA 132 + + + L A Sbjct: 266 ARLRFSLEQLVA 277 >gi|114321576|ref|YP_743259.1| response regulator receiver modulated metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1] gi|114227970|gb|ABI57769.1| response regulator receiver modulated metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1] Length = 480 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + ++ + + G+ V A S A + + + +++D M E Sbjct: 14 VLVVDDNPANLRLMVSVLREGGYAVRVAPSGRLALDSVQARPA-DLILLDIRMPDLDGYE 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P D+ V +L + + G GA ++ KPF E + ++ + Sbjct: 73 VCRRLKADPARHDIPVIFLSALCEPADKVRGFAVGAVDYITKPFVAEEVLVRVQSHLALH 132 Query: 122 KSKDENQFLDA 132 S+ + L A Sbjct: 133 ASQQRLEALVA 143 >gi|23013751|ref|ZP_00053613.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 238 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 2/124 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + ++D +R + R + +G+ V S AR+ +E P+ ++D + + Sbjct: 5 KRIYVIDDEPDIRALLRQVLEGYGYQVTPLASGALARQAIRREP-PDLCIVDLGLPDMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR++ V L + G GA+ +++KPF L + + + + Sbjct: 64 LT-LVRELWEDVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRR 122 Query: 122 KSKD 125 Sbjct: 123 DQLA 126 >gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + G+ A +E+ P+ +V+D + + Sbjct: 7 VLVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKF-REVAPDLVVLDLMLPVLDGLE 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++ + L + + + G +GA+ +L+KPF+ E L +R + Sbjct: 66 VA-RRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRR 121 >gi|312959933|ref|ZP_07774448.1| putative two component response regulator transcription regulator protein [Pseudomonas fluorescens WH6] gi|311285880|gb|EFQ64446.1| putative two component response regulator transcription regulator protein [Pseudomonas fluorescens WH6] Length = 263 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+ + + + GF A A E + L P+ +++D M + Sbjct: 36 VLIAEDEPEIADILTAYLKRAGFRTAHAQDGRRALE-LHQLLKPDLVLLDVMMPKLDGWM 94 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R + V L + G R GA+ +++KPFN + ++ + + Sbjct: 95 VLAELRHRG---NTAVIMLTAHDQDMDKLMGLRIGADDYIVKPFNPAEVIARIQAVLRR 150 >gi|295095071|emb|CBK84161.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L + GF V A +A + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALSLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|289424081|ref|ZP_06425867.1| transcriptional regulatory protein ResD [Peptostreptococcus anaerobius 653-L] gi|289155506|gb|EFD04185.1| transcriptional regulatory protein ResD [Peptostreptococcus anaerobius 653-L] Length = 224 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D ++ + F + V A + E + L + +++D M + Sbjct: 5 RILIIDDDLSIQDLLAEFFTANDYSVDCANNGVEGIKLFRDNLGYDLILLDIMMPNLDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + ++ + G G + ++ KPF+ L + + + Sbjct: 65 TTCKMIR---NTSKVPIIFMSALNAENDQLKGYELGCDDYITKPFSFNLLVKKVEAVLKR 121 >gi|269926249|ref|YP_003322872.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789909|gb|ACZ42050.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + V + GF V A+ +A + + P+ +V+D +M + Sbjct: 1 MK-VLVADDDLDMLDVTAYALRREGFNVIAASDGLQALRRWQMDH-PDVVVLDANMPKMN 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ ++ V L D + ++ G GA+ ++ KPF+ L +R + Sbjct: 59 GFEVCKRIREQ---SNTPVILLTALNDEDHIVQGFHIGADDYVTKPFSHRQLAMRIRAVA 115 Query: 119 QM 120 + Sbjct: 116 KR 117 >gi|255282781|ref|ZP_05347336.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] gi|255266802|gb|EET60007.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] Length = 217 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 54/132 (40%), Gaps = 7/132 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + R G+ A EA + ++ + +++D + Sbjct: 1 MIKILIVEDEEAIANLIRMNLVKAGYQCELAFDGEEAADKIAQKSY-DLILLDIMLPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + + + + D+ V +L + ++ + G R GA ++ KPF L + + Sbjct: 60 GYEVLEYAKSV----DIPVIFLTAMGETQQKVKGLRLGAEDYIAKPFEIAELLARVETVL 115 Query: 119 QMQKSKDENQFL 130 + K ++ L Sbjct: 116 RRYKKTEQKLRL 127 >gi|197336880|ref|YP_002157952.1| sensory transduction protein kinase [Vibrio fischeri MJ11] gi|197314132|gb|ACH63581.1| sensory transduction protein kinase [Vibrio fischeri MJ11] Length = 864 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGVL 60 ++L+V+ + I +KV L GF V A + EA + + P + +++D M + Sbjct: 742 KTVLVVEDNAINQKVASLLLKKAGFSVEIANNGQEALDMVMSKTSPYSLVLMDCMMPIMD 801 Query: 61 EF--IAHVRQMPLG---TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 F +R+ + + L V E + ++G + ++ KPF +E + + Sbjct: 802 GFAATEAIRKWEENQEKKRLPIIALTASVFVEDIDKCYQSGMDDYVAKPFRKELILEKLE 861 Query: 116 E 116 Sbjct: 862 A 862 >gi|307153686|ref|YP_003889070.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983914|gb|ADN15795.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 1/132 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61 +LLV+ + + + N ++V EA E + N ++D + G+ Sbjct: 2 RILLVEDEPDLGEALKKALNQKKYIVDWVQDGAEAWTCLESQWTEYNLAIVDWLLPGISG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V L + E + G AGA+ +L+KPF L +R L + Sbjct: 62 LDIIKRLRKQKNSLPVLMLTAKDQMEDKVIGLDAGADDYLIKPFGMAELLARLRALGRRS 121 Query: 122 KSKDENQFLDAI 133 QF + Sbjct: 122 PQLQPQQFQRGL 133 >gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ +R R F F V E S E E P+ ++D + G+ Sbjct: 1 MK-ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEK-PDIAILDVMLPGMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + L + + I G + GA+ ++LKPFN + ++ L + Sbjct: 59 GFEVCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118 Query: 121 QKSKDEN 127 + +E Sbjct: 119 LEGINEE 125 >gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 240 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D ++ K R F GF V A EA E +++++D + + Sbjct: 17 MK-VLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGS-FDFIILDLMLPKID 74 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ +DVF+ L + I G GA+ ++ KPFN L MR L Sbjct: 75 GITLCNRIRQQ---SDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLI 131 Query: 119 QMQK 122 + Q+ Sbjct: 132 RRQE 135 >gi|167645552|ref|YP_001683215.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167347982|gb|ABZ70717.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 261 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R V G+++ A+ E + +V+D + G Sbjct: 29 RILIVDDDPGIRDVVSDFLGRHGYVIDTASDSRT-MEQALARGPVDLIVLDIMLPGEDGL 87 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R++ + L + I G GA+ +L KP N L +R + + ++ Sbjct: 88 -AICRRLSAADGPAIIMLSAMGEETDRIVGLELGADDYLPKPCNPRELLARIRAVLRRRQ 146 >gi|56479148|ref|YP_160737.1| osmolarity response regulator [Aromatoleum aromaticum EbN1] gi|56315191|emb|CAI09836.1| Transcriptional regulatory protein similar to OmpR [Aromatoleum aromaticum EbN1] Length = 248 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD +R + + GF V + + +V+D + G Sbjct: 11 RVLLVDDDARLRDLLSRYLQEQGFTVKAVVDAPS-MDRALHREHFDLMVLDLMLPGEDGL 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + + L + D I G GA+ +L KPFN L + + + Q Sbjct: 70 TICRRLRADENAMPIIMLTAKGDDVDRIIGLEMGADDYLAKPFNPRELVARIHAVMRRQ 128 >gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71] gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71] Length = 258 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+V+ + ++ D + +A + + +V+D + G+ L Sbjct: 23 RILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAW-DLIVLDLRLPGMGGL 81 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G + L + + G GA+ +L KPF+ L + L + Sbjct: 82 DICRQLR--ERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRR 139 Query: 121 QKS--KDENQFLD 131 + EN L+ Sbjct: 140 TRMNRHQENAELE 152 >gi|325268223|ref|ZP_08134856.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella multiformis DSM 16608] gi|324989365|gb|EGC21315.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella multiformis DSM 16608] Length = 878 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 11/139 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D + +R R + + V EA E + ++P+ ++ D M + Sbjct: 635 VLVIDDNGDIRTYLRSALSPI-YKVSEAVDGKNGLEMARR-IVPDLIISDIMMPVMDGLE 692 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + ++Q + + V L ++ + G GA++++ KPF+ L + L Q + Sbjct: 693 FCSQLKQDKAISHIPVILLTARSLDDQRVEGYEHGADAYIAKPFSLRLLLSRIDNLIQSR 752 Query: 122 K-------SKDENQFLDAI 133 + + DEN L+ + Sbjct: 753 RKLSQLFSNSDENDVLEKL 771 >gi|313499963|gb|ADR61329.1| Histidine kinase [Pseudomonas putida BIRD-1] Length = 785 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G V AT EA E +E + +++D +M + + Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREE-FDLVLMDCNMPVMDGY 723 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +RQ ++ + L E+ AG N +L KPF RE L + Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALV 777 >gi|310657554|ref|YP_003935275.1| DNA-binding response regulator [Clostridium sticklandii DSM 519] gi|308824332|emb|CBH20370.1| DNA-binding response regulator [Clostridium sticklandii] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 43/116 (37%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 ++++ + +R G+ V EA S +A E ++D + G+ F Sbjct: 1 MVLEDEYAIRSFVTLNLKREGYEVIEAESGEQAIELYNANPDIKVAILDVMLPGIDGFEV 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V L + + G GA+ ++ KPF+ L +R L + Sbjct: 61 LKYLREKNPQMGVIMLTARTHEQDKVLGLEYGADDYISKPFSPTELVARIRSLIRR 116 >gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|156743249|ref|YP_001433378.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus castenholzii DSM 13941] gi|156234577|gb|ABU59360.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Roseiflexus castenholzii DSM 13941] Length = 900 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L+VD +R + L G AT EA + ++ + +++D M + + Sbjct: 4 RILVVDDHDYIRHLLVRLLTSQGHQTSVATGGREALDLLSQQS-FDLVLLDLMMPDMNGI 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ + V + D + + GA+ +L KPFN LR + + Sbjct: 63 EVLEQLRQQNVIYHTPVIVVSGVHDLDMVAQCIELGADDYLFKPFNDVLLRARVNASLER 122 Query: 121 QKSKDENQ 128 + +D + Sbjct: 123 KMLRDHER 130 >gi|78045890|ref|YP_362065.1| two-component system response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927350|ref|ZP_08188603.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325928590|ref|ZP_08189775.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|78034320|emb|CAJ21965.1| two-component system response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541023|gb|EGD12580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325542273|gb|EGD13762.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 227 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + V + G+ +A + P+ +++D + G L+ Sbjct: 10 VLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQ-QPDLVLLDLMLPNRGGLD 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V V + V+ + G GA+ ++ KPF+ + ++ + + Sbjct: 69 ICRDLRKESA---VPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRH 125 Query: 122 K 122 + Sbjct: 126 R 126 >gi|127514347|ref|YP_001095544.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126639642|gb|ABO25285.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 242 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + ++ R V + ++ +AR+ + + L++D + Sbjct: 14 RRILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQL-RSKCFDLLLLDRMLSDGDG 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + G + + ++ G +GA+ +L+KPF+ LR ++ L + Sbjct: 73 LTLCQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRS 132 Query: 122 KSKDENQ 128 + +Q Sbjct: 133 AQQAADQ 139 >gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + + GF V A +V A + LP+ +V+D + Sbjct: 5 RILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRA-RLPDLMVLDWMLPDCDGV 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 IA +R+ + + L + G GA+ +L KPF+ L + + Sbjct: 64 SWIAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHARLRR 123 >gi|290769859|gb|ADD61631.1| putative protein [uncultured organism] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + +++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|264677348|ref|YP_003277254.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533046|ref|ZP_07046432.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262207860|gb|ACY31958.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718931|gb|EFI59902.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LLLV+ +R + G V A A + P+ +V+D S+ G+ Sbjct: 7 LLLVEDDSAMRTTLQRTLMRRGLHVDVAADGPSALAHWQT-REPDAVVLDLSLPGLDGLQ 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R LG V L + G AGA+ +L KPF+ + L +R L + + Sbjct: 66 VLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124 >gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 221 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + G++V AT A E + + +++D + + Sbjct: 3 KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGE-FDLIILDVMLPKIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ + + L + E + G + +++KPF+ L + + + Sbjct: 62 FVVCEIIRKESS---MPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLR 118 Query: 120 MQKSKDEN 127 +EN Sbjct: 119 RANGLEEN 126 >gi|602401|gb|AAB36611.1| OmpR [Xenorhabdus nematophila] Length = 239 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + ++ GF V A + + + +++D + G + Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQ-MDRLLTRESIQLIILDLMLPGEDDC 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + + + I G GA+ +L KPFN L MR + + Q Sbjct: 65 LSAEELRSQNNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRLVLRRQ 123 >gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 247 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + G+ V A A ++ P+ +V+D + + F Sbjct: 22 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAI-RAARQFQPDAVVLDVMLPDLDGF 80 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + V V +L E+ +AG G + ++ KPF+ E + +R L + Sbjct: 81 EVLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 138 >gi|293370623|ref|ZP_06617175.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292634357|gb|EFF52894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1339 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ +R F D F + E+ + EA E K+ P+ ++ D M + F Sbjct: 1085 VLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGFT 1142 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120 ++Q + V L + E + G GA+++++KPFN E L+ + L Sbjct: 1143 LCRKIKQNVNLNHIPVILLTSKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINTR 1202 Query: 121 QKSKD 125 Q+ + Sbjct: 1203 QQLRK 1207 >gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 1 MDSL---LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M S+ LL++ +R + G V A + + E +E P+ +V+D + Sbjct: 1 MTSVPFLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLP 59 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ F +R + + L D ++ G +GA+ +++KP L +R Sbjct: 60 GIDGFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIR 116 Query: 116 ELPQMQKSKDEN 127 + + + + + Sbjct: 117 AVLRRGERESTD 128 >gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676] gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676] Length = 226 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1] gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1] Length = 1838 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1718 KVLIVDDDVRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1777 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+MP + + L + +GA+ ++ KP + L M + + Sbjct: 1778 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVEPDYLLSVMEQWMRG 1837 Query: 121 Q 121 + Sbjct: 1838 K 1838 >gi|188590423|ref|YP_001919717.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|251779363|ref|ZP_04822283.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500704|gb|ACD53840.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|243083678|gb|EES49568.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 230 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 6/134 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R VF+A EA E E + +V+D M + Sbjct: 1 MYNVLVVDDEKEIRDAIEIYLRGENLKVFKAADGLEALEILNNEK-IHVIVLDIMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ +++KPFN L ++ + Sbjct: 60 GIRTCLKIRE-TENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRR 118 Query: 121 Q----KSKDENQFL 130 +DE Q L Sbjct: 119 YDKPLNIEDEEQIL 132 >gi|146280447|ref|YP_001170600.1| response regulator receiver [Pseudomonas stutzeri A1501] gi|145568652|gb|ABP77758.1| response regulator receiver [Pseudomonas stutzeri A1501] gi|327478664|gb|AEA81974.1| response regulator receiver [Pseudomonas stutzeri DSM 4166] Length = 129 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + + R++ GF+V A +A + + P+ ++D + Sbjct: 7 KRILMVEDEEDIAFLIRYMLERHGFVVDHAADGRQALDHFAQAAPPDLTLMDIMLPYHDG 66 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109 LE I +R V V L + ++ GA+ ++ KPF E Sbjct: 67 LELIERLRAQAGWESVPVLMLTAKAREVDIVRALELGADDYVTKPFQPEE 116 >gi|117168636|gb|ABK32300.1| Jer7 [Sorangium cellulosum] Length = 1762 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + A E ++ +++D M + Sbjct: 1642 KKVLVVDDDVRNIFAMTTILDAQQMKTVYVETGRAAIEMLQRTPDIEIVLMDIMMPEMDG 1701 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +R P + + + + AGAN ++ KP + E L +R Sbjct: 1702 YDTIRAIRAKPEHHALPIIAVTAKAMKGDREKCFEAGANDYISKPVDPEHLLAMLRLWLH 1761 Query: 120 M 120 Sbjct: 1762 R 1762 Score = 78.7 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 7/117 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V++ + +D GF A A +E N + +D ++ + Sbjct: 1375 VLIVENDASFAHFVMDVAHDHGFKAILAYRGGAALSIV-RERRVNAITLDINLPDMDGWR 1433 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMREL 117 + V++ + V + E+ R GA L KP R+ L R L Sbjct: 1434 VLDRVKRDLATRHIPVQVITT---DEERERALRMGATGVLCKPLKTRDALDETFRRL 1487 Score = 46.0 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 8/91 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +++L + R+ L + S EA + E + L++ + + Sbjct: 1496 RTVVLAEPDEAERQELVELLGGDDVTIRSVASGEEALDALLTEGA-DVLILHLDLPDMRC 1554 Query: 60 LEFIAHVRQMPLGTDVFVYY-----LLMEVD 85 + I + Q T++ V + + Sbjct: 1555 FDLIGQLAQGSGPTELPVLVYAPEEISAADE 1585 >gi|159899985|ref|YP_001546232.1| response regulator receiver modulated diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159893024|gb|ABX06104.1| response regulator receiver modulated diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 412 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D + + ++ + + G+ V A + + + +P+ +++D M Sbjct: 4 RILVADDNEALSQLLELILVEHGYEVTLANDGGDLLAKAQLQ-IPDLMIVDILMPRIDGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R + + L E ++ G GA+ +++KPF L +R Sbjct: 63 EAIRQLRNDTRLAHIPIIVLTARTAIEDVVTGFELGADDYIVKPFQMPELLARVRAQLLR 122 Query: 121 QKSK 124 + Sbjct: 123 ATRR 126 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + + V + A E + + +++D + + Sbjct: 1 MK-ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQT-YDYDLILLDVILPRLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G + + L + G AGA+ +++KPF+ E L +R L Sbjct: 59 GISLCRQIR--SSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L VD + + + L + +G V + E +++ P+ L++D M + Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETL-RDVNPDLLILDVEMPYTNGI 440 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR P +++ + +L + D E + GA+ F+ KP L + + Sbjct: 441 ELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 500 Query: 121 QKS 123 K Sbjct: 501 VKL 503 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 15/128 (11%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+ D ++R + L G+ V + EA + P+ +V+D M G+ + Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQH-PDVIVLDLLMPGMNGWE 1439 Query: 64 --AHVRQMPLGTDVFVYYL-----LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 A +++ + + ++ KP L ++R+ Sbjct: 1440 TMAMLKESTETKHIPIVICSVYKPTTNNQPSSD-------FVDWISKPVQESYLLHSLRQ 1492 Query: 117 LPQMQKSK 124 + Sbjct: 1493 AIAKSSRR 1500 Score = 69.8 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ LF F A + EA +E+ P+ L++D + F Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAI-HLSQEVNPDLLILDLILPETDGF 1560 Query: 63 IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRELPQ 119 +++ ++ V + E + G FL K + + EL Q Sbjct: 1561 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQ 1620 Query: 120 M 120 Sbjct: 1621 R 1621 >gi|67920984|ref|ZP_00514503.1| GGDEF [Crocosphaera watsonii WH 8501] gi|67857101|gb|EAM52341.1| GGDEF [Crocosphaera watsonii WH 8501] Length = 595 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD ++ + G V TS A K + P+ +++D M + Sbjct: 12 NILIVDDKPANLRILSTILTKAGHKVRAVTSGNMAL-ITAKTMPPDIILLDVKMPDIDGY 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q P ++ + +L D E + AG +++KPF E + + + Sbjct: 71 QVCQKLKQFPETAEIPIIFLSALQDVENKVKAFEAGGVDYIIKPFQFEEVLARVSIHISL 130 Query: 121 QKSKDENQFLD 131 + + ++ Q L+ Sbjct: 131 KHAHNQLQKLN 141 >gi|332297448|ref|YP_004439370.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332180551|gb|AEE16239.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LV+ + ++R+ G E + + +E + + +++D + Sbjct: 1 MSCIMLVEDNTLIREAVAGYLQLDGHKTVEFDTGAGVLDAVRRE-IADLIILDVMLPDGN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + V + +L + I G GA+ ++ KPF+ + L ++ L + Sbjct: 60 GFALA-KSIRAVSAVPIIFLTAKDSESDRILGFELGADDYICKPFSAKELVLRVQALLRR 118 Query: 121 QKSKDE 126 E Sbjct: 119 SGGSAE 124 >gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + G+ V S +A + + V+D + + Sbjct: 3 THILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQE-FDLAVLDIMLPDIDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + +R V L I G GA+ +++KPF L ++ + Sbjct: 62 FELLRTIRADRTY---PVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|309798826|ref|ZP_07693089.1| response regulator SaeR [Streptococcus infantis SK1302] gi|308117552|gb|EFO54965.1| response regulator SaeR [Streptococcus infantis SK1302] Length = 205 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ VF A EA E +++ + ++ D M + Sbjct: 3 KTILLVDDEVEITDIHQRYLVQAGYQVFVAHDGVEALEIFKRKP-IDLIITDIMMPRMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D ++ + + I G GA+ F+ KPF+ L + + Sbjct: 62 YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILHR 120 >gi|261211256|ref|ZP_05925545.1| transcriptional regulator CpxR [Vibrio sp. RC341] gi|260839757|gb|EEX66368.1| transcriptional regulator CpxR [Vibrio sp. RC341] Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF + EA E + +++D M + Sbjct: 1 MAHILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAVSDE--VDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKS 123 ++ Sbjct: 118 TQN 120 >gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|71280786|ref|YP_269105.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71146526|gb|AAZ26999.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 236 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + +R+ D G V +A K + + +++D M G Sbjct: 1 MTHILIVDDNPDIRQPLARYLGDHGMRVTSV-DGGKAMRETLKNSVIDLILLDIMMPGED 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R + + V L + + G GA+ ++ KPFN L ++ + + Sbjct: 60 GL-SLCRFVQSNLKIPVILLTALTEDTDRVVGLEMGADDYVAKPFNPRVLLAKIKAVLRR 118 Query: 121 QKS 123 +S Sbjct: 119 SQS 121 >gi|13472734|ref|NP_104301.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14023481|dbj|BAB50087.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ R G+ + EA + A E E+E P+ +++D + G+ Sbjct: 7 RILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMEQEK-PDLVLLDLGLPGMGGH 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G D+ V L D ++ GA+ ++ KPF L +R + + Sbjct: 66 ELLRKWRDEGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKF 125 Query: 123 SKD 125 + Sbjct: 126 QQQ 128 >gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLV+ + + ++ + V A EA +KE + +++D + Sbjct: 3 KRILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEK-FDLILLDLMLPKVNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E + H+R+ + V V + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MELLKHIRE---TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIR 118 Query: 120 MQKSKDENQ 128 E + Sbjct: 119 RATLYAETE 127 >gi|315649484|ref|ZP_07902569.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315274957|gb|EFU38332.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 1219 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + V A + EA E + + +++D M + Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQDNPDYDLVLMDMMMPEMDG 1158 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+MP + + L + E AGA+ ++ KP E L MR Sbjct: 1159 YEAMRLLREMPEFEKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217 Score = 77.5 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M LL+V+ I R L + A++ EA K+ + +V+D + + Sbjct: 952 MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRY-DCMVLDLMLTDMT 1010 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + +R D+ + + K R A S ++K + E L Sbjct: 1011 GFELLDQIRDDENLMDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065 Score = 72.1 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ ++ + GF A E K P+ +++D + + Sbjct: 833 LLIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMA-KSYRPDAIILDIQLPVIDGWS 891 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + ++ + + V+ + + +++ G GA ++L KP +RE L A Sbjct: 892 VMGELKSSAVTRHIPVHVISV---VDEVKQGLMMGAIAYLKKPSSREALENA 940 >gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 545 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 46/121 (38%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESME--GV 59 +L+ + + + +K+ + + GF V A + EA + ++ + +++D M Sbjct: 423 RILIAEDNKVNQKLIKMMLTKEGFQVDIAANGQEAVDKLQESPENFDLVLMDIQMPVKDG 482 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ ++ + + +G + ++ KP + + A+ Sbjct: 483 FEATKAIRE-AGFHNLPIIAITAHALKGYREKCLASGMDDYVTKPIKKNEVISAIERQMT 541 Query: 120 M 120 Sbjct: 542 R 542 >gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 227 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL++ + ++ R F + S + E E + +++D + Sbjct: 1 MKKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEH-FDLVILDIMLPKVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEVCKQIRA---AKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHL 116 Query: 119 QMQKSKDENQ 128 + + Q Sbjct: 117 ARYERLSDKQ 126 >gi|257487365|ref|ZP_05641406.1| sensory box protein/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009036|gb|EGH89092.1| sensory box protein/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 705 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S E + P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L + ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|239942886|ref|ZP_04694823.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 256 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+V+ +R+ + +G+ V A E + L++D + + Sbjct: 26 SVLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAH-DLLILDVMLPALDGI 84 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V V + D ++AG AGA+ +++KP + + +R L + Sbjct: 85 GLCHRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRR 141 >gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 243 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 15 NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 73 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 74 IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 130 Query: 120 MQKSKDEN 127 ++N Sbjct: 131 RYTYFNQN 138 >gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|218130473|ref|ZP_03459277.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697] gi|217987352|gb|EEC53682.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697] Length = 229 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G++V A S EA + N L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYVVDTANSAEEALKL--DISAYNLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122 Query: 121 QKSKDENQFLDAI 133 + + + + I Sbjct: 123 TQQGERERAPEQI 135 >gi|307151036|ref|YP_003886420.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306981264|gb|ADN13145.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 121 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + +++ G+ V A EA E + P+ +V D M + Sbjct: 2 MTTVLVVEDTLSEQELISLYLRKAGYTVITANDGKEAIEKTLAQK-PDVIVTDVVMPNMN 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +++ P + V + + G + G + ++ KPF E L A++ + Sbjct: 61 GFELCRSIKKNPQTQKLPVIACTSKTQDLDRLWGMKQGIDVYVTKPFTPEELIRAVKSV 119 >gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 234 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 8/131 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + GF+V A A + + P+ +V+D + G+ Sbjct: 5 TILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALA-RSVKPDLVVLDVMLPGLDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQ+ T VFV L D + G GA+ +L KPF+ L ++ + + Sbjct: 64 EVC-RQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR-- 120 Query: 123 SKDENQFLDAI 133 N+ + AI Sbjct: 121 ----NRVIRAI 127 >gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] Length = 832 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + +V L ++ V A S +A +E + +++D + G+ F Sbjct: 8 TVLLVEDDPRMHEVLSALLHEDNITVIHAPSGQQAIAMV-QEKHYDLMLLDLGLPGMNGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + PL + V L + G GA +L KPF LR + + Sbjct: 67 EVLKQLHDHPLERPIPVIVLTAWNSTTDKLRGFELGAVDYLTKPFEAAELRARLCAALRT 126 Query: 121 QKSKDEN 127 + +D+ Sbjct: 127 KHLQDQL 133 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 11/128 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL D + I +KV L G+ A + E + E++ + + +D M + Sbjct: 551 RVLLCDDNLINQKVALRLLQQMGYKADVANNGLECLKALERQPY-DLIFMDVQMPEMDGL 609 Query: 63 --IAHVRQMPLGTDVF--------VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 +R+ + + AG + +L KP + +R Sbjct: 610 QATQQIRRRQQDPSHPAHFKSPIFIIAITANAMQGDRDKCIAAGMDDYLAKPVRTDDIRL 669 Query: 113 AMRELPQM 120 + Sbjct: 670 IIERWGSR 677 Score = 90.6 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 4/119 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + R++ + +G + A+S +A ++ K + ++D M + Sbjct: 408 RLLIVDDNPTNRRILTLQTSKWGMIPRSASSGSQALDWMAKGEAFDLAILDMQMPDMDGL 467 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANS-FLLKPFNRETLRFAMRELP 118 + +R++P + + L G + A + L KP L + + Sbjct: 468 MLAKRIRELPGSQMMPLVLLTSMGLRTD-SPGFTSVAFASCLTKPIKPAQLHEVLMRVV 525 >gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans] Length = 231 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 + +L+VD H + + + + VF+ + EA + C + + ++D + G Sbjct: 3 NKILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALD-CIDKTELDLAILDIMLPGASG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L +R + L + I G GA+ ++ KPF L ++ + Sbjct: 62 LSICQKIRDKYTY---PIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLR 118 Query: 120 MQK 122 K Sbjct: 119 RYK 121 >gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33] Length = 651 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ ++ KV ++V + + +++D + + Sbjct: 1 MK-ILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTY-GSTFEYDLIILDIMLPNLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V + L + + + G AGA+ +++KPF+ L +R L + Sbjct: 59 GISLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRR 118 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 3/124 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 + ++++D + L +GF V + + + P+ LV+D +M Sbjct: 526 NKVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQA-VTPDALVLDVNMPQING 584 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R P + V +L + D G + +L KP L + Q Sbjct: 585 FELCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQ 644 Query: 120 MQKS 123 ++ Sbjct: 645 RVRA 648 Score = 40.6 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 13/133 (9%), Positives = 35/133 (26%), Gaps = 25/133 (18%) Query: 9 SSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-------LPNYLVIDESMEGV-- 59 + + + G + A + A E P+ +++ + + Sbjct: 391 DNEFNQSIVAVA-ASRGIRIQIAPTPDIAPAMLTNEPVLDGFGEDPDVILM--RLPSMPS 447 Query: 60 ---------LEFIAHVRQM----PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106 E + + + + + + + R G FL+ P Sbjct: 448 RAEVIEQPNSELSNIWKTLQTFAERYPKLPIVVIGDRGEMSDRLEAMRRGGKLFLVTPTP 507 Query: 107 RETLRFAMRELPQ 119 E + + L + Sbjct: 508 PEQIVDTVVNLLR 520 >gi|315128019|ref|YP_004070022.1| chemotaxis response regulator [Pseudoalteromonas sp. SM9913] gi|315016533|gb|ADT69871.1| chemotaxis response regulator [Pseudoalteromonas sp. SM9913] Length = 120 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ GF V EA EA +++ + ++ D +M + Sbjct: 1 MKRILAVDDSASMRQMVSFTLKTAGFDVTEAKDGSEALAIAKQQG-FDAVISDVNMPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R +P + L E +K + G AGA +++KPFN + L ++++ Sbjct: 60 GITLIRELRGLPNYKFTPLLMLTTESGMDKKVEGKAAGATGWIVKPFNPDQLLAVLKKVI 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family) [Raphidiopsis brookii D9] gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family) [Raphidiopsis brookii D9] Length = 236 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLVD + + G++V + E + + L++D + Sbjct: 1 MK-ILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTY-DLLILDWMLPEKT 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ G ++ V +L + + + G AG + +L+KPF L +R L Sbjct: 59 GLEICQELRRQ--GKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|207724862|ref|YP_002255259.1| two component response regulator protein [Ralstonia solanacearum MolK2] gi|206590087|emb|CAQ37048.1| two component response regulator protein [Ralstonia solanacearum MolK2] Length = 245 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R + GF V + + P +V+D M V Sbjct: 4 TKILVVDDDVELRDLLREYLSQQGFAVSVMHDG-DGLAARLERERPALVVLDLMMPKVDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A D+ V L D I G GA+ +L KPF+ L + + + + Sbjct: 63 LSALRDLRARNDDMPVILLTARGDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122 Query: 122 KS 123 ++ Sbjct: 123 QA 124 >gi|154484485|ref|ZP_02026933.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC 27560] gi|149734333|gb|EDM50250.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC 27560] Length = 234 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + + G+ V +A EA E +KE L+ID M + Sbjct: 5 MYNILVCDDDKDIVEAIDIYLSKEGYNVIKAYDGMEAMEILKKED-IQLLLIDVMMPRLD 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 GIRATLKIREK-SSIPIIILSAKSEDSDKIIGLDVGADDYITKPFNPLELIARVKSQIRR 122 >gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola DG893] gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola DG893] Length = 236 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ + + ++ R D G E +E + +V+D + G+ Sbjct: 1 MTRNVLIVEDNPGIGELVRMHVADLGMNAVLCDRGDTGLERF-REGDIDLVVLDLMLPGM 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R P V V L + + G GA+ +L KPF+ L ++ L Sbjct: 60 DGLSVCREIRSGPGY--VPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKAL 117 Query: 118 PQM 120 + Sbjct: 118 FRR 120 >gi|119896995|ref|YP_932208.1| DNA-binding response regulator CreB [Azoarcus sp. BH72] gi|119669408|emb|CAL93321.1| two-component system regulatory protein [Azoarcus sp. BH72] Length = 235 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + + + G+ +A +++D + Sbjct: 3 RRILIVDDEPAIADMLAYALRTEGYEPDCVGLGGDALAALRGGADYALVILDVGLPDQSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ +DV V +L D I G GA+ ++ KPF+ + +R + + Sbjct: 63 FDVCRALRRE---SDVPVIFLTARSDEVDRIVGLELGADDYVPKPFSPREVASRVRAILR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] Length = 246 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD VR GF V A S EA E + LV+D M + Sbjct: 21 RTVLMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESH-DALVLDVQMPELDG 79 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 LG D+ + L IAG AGA+ +L KPF+ L + L + Sbjct: 80 VAVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRA 139 Query: 122 KSKDE 126 ++ Sbjct: 140 SHTEQ 144 >gi|92113096|ref|YP_573024.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796186|gb|ABE58325.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 227 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + ++ G+ E + + P +++D + G Sbjct: 4 TILIVEDEPKIARLVADYLQQSGYATHHLAHGDEVMPWL-ADHAPALILLDLMLPGTDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V L V+ + G GA+ ++ KPF+ + ++ + + Sbjct: 63 TLCRRIGDQYPALPVIMLTARVEEVDRLLGLELGADDYICKPFSPREVVARVKAVLRRLH 122 Query: 123 SKDEN 127 + E Sbjct: 123 PQTEE 127 >gi|17227925|ref|NP_484473.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17129774|dbj|BAB72387.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 276 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 3/124 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+++ + R + GF V A + + +E LP+ ++ D M + Sbjct: 6 NTILVIEDDTVTRNLYLKGLKIEGFNVIGAENGVVGVQKA-QEHLPDIIICDIMMPQMDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +RQ L + +L + G GA+ ++ KP + L A+ + Sbjct: 65 YSVLTILRQDSLTAGIPFIFLTASDMRGDLRKGMELGADDYITKPSTLDELLKAIATRLR 124 Query: 120 MQKS 123 Q S Sbjct: 125 KQAS 128 >gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + GF ++ A E +E + +++D + G+ Sbjct: 5 TRVLIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEK-FDIVLLDVMLPGMDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR++ ++V + L E + G GA+ ++ KPF L + + Sbjct: 64 IEICRRVREI---SNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALR 120 Query: 120 MQKSKD 125 + + Sbjct: 121 RRDLAE 126 >gi|254881198|ref|ZP_05253908.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254833991|gb|EET14300.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1408 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + ++ + V EA+ EA + + + +++V D M + Sbjct: 1155 TILVVEDNKDMRAYIRSILAEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E I R G + +LLKPF+ L + + + Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272 Query: 121 QKSKDE 126 +K + Sbjct: 1273 RKRFQQ 1278 >gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+V+ I+R++ + + G+ + EA EA E E + +++D + + Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFE-EYEVHLIILDIMLPEL 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ ++V + L VD + + G GA+ ++ KP++ L + L Sbjct: 60 DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116 Query: 118 PQMQ 121 + + Sbjct: 117 MESR 120 >gi|297588714|ref|ZP_06947357.1| response regulator [Finegoldia magna ATCC 53516] gi|297574087|gb|EFH92808.1| response regulator [Finegoldia magna ATCC 53516] Length = 239 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ VR + + F A + EA + + +D + + Sbjct: 5 TRILIIEDDRAVRNLISNTLKINRFNYDLAVNGSEAL-LLFTTNKYDIVFVDLGLPDIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 I +++ + + + + E I AGA+ FL KPFN E L +R + Sbjct: 64 -IDLIKKFREFSTTPIIVISARSNDEDKIEALDAGADDFLTKPFNVEELLARVRSTIRRL 122 Query: 122 KSKDENQ 128 + N+ Sbjct: 123 NYSENNR 129 >gi|254285882|ref|ZP_04960844.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226] gi|150424064|gb|EDN16003.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF + +A E + +++D M + Sbjct: 1 MAHILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKS 123 ++ Sbjct: 118 TQN 120 >gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI] gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|86144202|ref|ZP_01062538.1| two-component system, transcriptional regulatory protein [Leeuwenhoekiella blandensis MED217] gi|85829332|gb|EAQ47798.1| two-component system, transcriptional regulatory protein [Leeuwenhoekiella blandensis MED217] Length = 238 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + + V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLKDYLSMNDYDVTHAKNGMEGFEKFKKDD-FDLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F DV + +L + E ++ G + GA+ +L KPF+ E L ++ + + Sbjct: 65 FTLAKEIREKNEDVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMLRK 124 >gi|332880752|ref|ZP_08448424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681260|gb|EGJ54185.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 937 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 LL+V+ + R H F+ F V EA E E +E P+ ++ D M Sbjct: 680 KKLLIVEDNADFRAYLVHEFSS-DFDVVEAGDGAEGEEMVREEW-PDLVISDLMMPKRDG 737 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + F ++ + + L ++ + I +AGA+S++ KPFN E L+ +++L + Sbjct: 738 IAFCQRMKNDIHTSHIPFILLTAKMSDDARIESYKAGADSYISKPFNFEMLQVRVQKLIE 797 Query: 120 MQKSKDE 126 ++++ E Sbjct: 798 QRETRKE 804 >gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673] gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673] Length = 235 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + V++ S EA C + ++D + + Sbjct: 4 KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEAL-VCIGSTDFDLAILDIMLPDISGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V L + I G GA+ ++ KPF L ++ + Sbjct: 63 SICQSIRSKEYTY--PVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRR 120 Query: 121 QK 122 K Sbjct: 121 YK 122 >gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein [Edwardsiella tarda ATCC 23685] gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella tarda ATCC 23685] Length = 996 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 3/119 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLE 61 +L+V+ + +++ R L D G +V A EA + + + +++D M + Sbjct: 635 RILVVEDNQNNQQIARELLEDEGAIVTLAAHGQEAIDRLKATPQGFDLVLMDLQMPVMDG 694 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++R + + + A AG N + KPFN L +++ Sbjct: 695 INATQYIRSHLTLHTLPIIAMTANAMVSDRQACLAAGMNDHIGKPFNLRELIQTIQKHL 753 Score = 86.8 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 9/132 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE----LLPNYLVIDESMEGV 59 +L+VD + R + + + G+ V A +A ++ + L ID M G+ Sbjct: 486 VLMVDDNPTARSLLQQMALTLGWRVDCAAEGEQALTLIAQQQQAGDPYDVLFIDWLMPGL 545 Query: 60 LE--FIAHVRQMPLGTDVF-VYYLLMEVDFEKMIA-GARAGA-NSFLLKPFNRETLRFAM 114 I +R + + + + G + FLLKP L ++ Sbjct: 546 DGWQTIQRLRSRLHEKQLPLLVMVTANDRECLLQRSSEEQGILDGFLLKPVTPLMLLDSV 605 Query: 115 RELPQMQKSKDE 126 + +++ + Sbjct: 606 AGALRERQNLTQ 617 >gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei 87.22] Length = 225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R G V A + + + +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLL-REQRPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKD 125 + + + Sbjct: 117 RRGEREA 123 >gi|237799880|ref|ZP_04588341.1| sensory box protein/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022735|gb|EGI02792.1| sensory box protein/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 464 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD VR + L + + A S +A + E P+ +++D M G+ Sbjct: 7 TILIVDDDVHVRDLLEVLLRNQHYETLTAESGEQALAMID-ERAPDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L + ++G AGA +L KP L +R L ++ Sbjct: 66 EVASQLKARKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVESAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|108763029|ref|YP_631993.1| sigma-54 dependent DNA-binding reponse regulator [Myxococcus xanthus DK 1622] gi|34329404|gb|AAQ63906.1| mutant NtrC-like activator [Myxococcus xanthus] gi|108466909|gb|ABF92094.1| sigma-54 dependent DNA-binding reponse regulator [Myxococcus xanthus DK 1622] Length = 477 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 2/131 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDF-GFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +L+VD VR R + G V EA +A E ++ D M + Sbjct: 11 TRVLVVDDDAGVRFTLREMLKSLSGVEVDEAVDGEDALEKLSARPY-ELVISDLRMPRMD 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V + + +AGA + KPF+ + L + + Sbjct: 70 GMELVRRLSLFSRSPRVIVITAHGSERFAVEAMKAGAYDYFRKPFDVDELLAVVSRALES 129 Query: 121 QKSKDENQFLD 131 + ++EN L Sbjct: 130 VRLREENARLS 140 >gi|26249400|ref|NP_755440.1| putative response regulator [Escherichia coli CFT073] gi|26109808|gb|AAN82013.1|AE016766_101 Putative response regulator [Escherichia coli CFT073] Length = 240 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +LL++ + + + R D G+ + AR +K+ + +++D + Sbjct: 6 KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 64 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++RQM + V + + G GA+ +L KPF+ L ++ L + Sbjct: 65 LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 122 Query: 120 MQKSKDENQFLD 131 Q++ +N L Sbjct: 123 RQEAMGQNILLA 134 >gi|148261169|ref|YP_001235296.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|146402850|gb|ABQ31377.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] Length = 262 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +R++ F V EA +V+D + G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREA-RRAYLNGHYQLVVLDLMLPGES 85 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F +R + V + L + I G GA+ ++ KPFN L +R + Sbjct: 86 GIDFARWLR---GESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVL 142 Query: 119 QM 120 + Sbjct: 143 RR 144 >gi|148549046|ref|YP_001269148.1| histidine kinase [Pseudomonas putida F1] gi|148513104|gb|ABQ79964.1| histidine kinase [Pseudomonas putida F1] Length = 785 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G V AT EA E +E + +++D +M + + Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREE-FDLVLMDCNMPVMDGY 723 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +RQ ++ + L E+ AG N +L KPF RE L + Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALV 777 >gi|325282380|ref|YP_004254921.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324314189|gb|ADY25304.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 229 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 5/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M+ +++++ VR+V R G V +V EA + + LV+D + G Sbjct: 1 MNHVVVIEDEATVREVLRFHLERAGLTVSAYAAVAEAEDALAGA---DALVLDWMLPGES 57 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L + +R + V L + + G GA+ +L KPF L +R L Sbjct: 58 GLGLLRRLRSHSELRRLPVLMLTARAAEAERVEGLETGADDYLTKPFGAAELVARVRALL 117 Query: 119 QMQKSKDENQF 129 + + + Q Sbjct: 118 RRTQPEQPQQL 128 >gi|313159142|gb|EFR58517.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 392 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 8/138 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L VD + + + + + + A+ EA E KE P+ +++D M Sbjct: 12 TILAVDDIATNIMLLKAVLSRAKYKIVTASGGYEAIEKASKE-APDLILLDIMMPDLDGY 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR----- 115 E I H++ P D+ V +L + E ++ G + GA+ ++ KPFN E L + Sbjct: 71 EVIKHLKADPATQDIPVIFLTALHNPEDIVKGFKLGASDYVSKPFNHEELITRVTHHIYL 130 Query: 116 ELPQMQKSKDENQFLDAI 133 Q + ++ + Sbjct: 131 AAAQRTIMQQRDELQATV 148 >gi|317051506|ref|YP_004112622.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] gi|316946590|gb|ADU66066.1| sigma-54 factor interaction domain-containing protein [Desulfurispirillum indicum S5] Length = 487 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R R G+ V A + + ++ D M + Sbjct: 6 KTVLVVDDEDQMRLALRETLTRAGYEVITAFDGNNGLSKL-QNNSIDAVITDLRMPVMDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + + + + ++GA +++KPF+ E + + + Q Sbjct: 65 MEFLQKALQEKPGLPIVLMTAYATVNTAVDAMKSGAFDYIMKPFSPEVIESTLERVFQYH 124 Query: 122 KSKDEN 127 + ++N Sbjct: 125 GALEQN 130 >gi|282165251|ref|YP_003357636.1| putative response regulator [Methanocella paludicola SANAE] gi|282157565|dbj|BAI62653.1| putative response regulator [Methanocella paludicola SANAE] Length = 128 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD + +V + + G+ V A S EA + EKE +P+ +++D M + Sbjct: 1 MTKIMVVDDEPDLLEVVKLILESDGYQVVTANSGQEALDKIEKE-MPDLVLLDIIMPRMD 59 Query: 61 EFIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGAR-AGANSFLLKPFNRETLRFAMREL 117 + ++ D+ V L + + G + ++ KPF R L ++ + Sbjct: 60 GWEVFSRIKGNTKTHDIPVIMLTAKDQRIDKLIGLHVVRVDDYITKPFGRAELLERIKRV 119 Query: 118 PQMQKSKDE 126 + + + Sbjct: 120 LEEKHKVAQ 128 >gi|300769838|ref|ZP_07079718.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300763289|gb|EFK60105.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 234 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLV+ V ++ + G+ V A +A E + + + +++D + + Sbjct: 1 MNEILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAV-DLVILDILLPQMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R TD+ V L E ++ G GA+ ++ KPF L+ +R L Sbjct: 60 GLDVCKAIR-DSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLL 118 Query: 119 QMQ 121 + + Sbjct: 119 RRK 121 >gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 220 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL++ + G+ V A E + +V+D + + Sbjct: 2 RLLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSET-FDAVVLDLGLPRMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V V L E IAG AGA+ +L+KPF+ L+ +R L + Sbjct: 61 EVLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120 Query: 123 SKDE 126 + Sbjct: 121 GRAR 124 >gi|197116683|ref|YP_002137110.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086043|gb|ACH37314.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 456 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD H++R G+ V A + +A +E P+ +++D + G+ Sbjct: 5 KIMVVDDEHLIRWSLEQNLKKQGYEVVTAGTGEDALRLA-REEQPDLVLLDYHLPGINGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R L D+ V + + E + R GA ++ KPFN + + +R+ + + Sbjct: 64 EVLQRIKELDEDILVIMVTAQGGLETAVNTMRHGAYDYINKPFNLDEMALVIRKALETSE 123 Query: 123 SKDENQFLDA 132 + E L + Sbjct: 124 LRREVVQLRS 133 >gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 5/135 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ R + L ++ GF V EA+S EA E C P+ +++D M + Sbjct: 1008 RSILIVEDQPNNRLLMIKLLSEIGFEVREASSGQEAIEIC-STWQPDLILMDMRMPVMNG 1066 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118 F + M + L + A AG + F+ KPF RE L +R+ Sbjct: 1067 FEATQQINAMSFAKKPIIIALTANTFEAEKQAIFNAGCDDFIGKPFQREELLEMIRKYLG 1126 Query: 119 -QMQKSKDENQFLDA 132 + +KDE++ L++ Sbjct: 1127 VEYIYAKDESETLNS 1141 >gi|70731371|ref|YP_261112.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345670|gb|AAY93276.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 222 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+V+ + N G+ V +A E + +++D + G L Sbjct: 2 RLLVVEDHVSLADELLEGLNRQGYAVDWLADGRDALYQGASEPY-DLIILDLGLPGVPGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + R G V L + + I G +AGA+ +L KPF+ E L ++ L + Sbjct: 61 EVLRKWRAD--GLATPVLVLTARGSWAERIEGLKAGADDYLSKPFHPEELHLRVQALLRR 118 Query: 121 QKSKDENQFLDA 132 + Q L A Sbjct: 119 SHGQANQQTLQA 130 >gi|83950753|ref|ZP_00959486.1| response regulator [Roseovarius nubinhibens ISM] gi|83838652|gb|EAP77948.1| response regulator [Roseovarius nubinhibens ISM] Length = 405 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD S + R++ L +G+ V EA S EA C+ E LP+ ++ D M G+ F Sbjct: 2 LIVDDSRLQRRIAGGLLRRWGYRVREAGSGAEALALCD-EALPDLVLSDWMMPGMSGPEF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RELPQ 119 R++ + L + D E++ AG AGA+ FL KP N LR + + + Sbjct: 61 CTAFRRLAGARYGYFILLTAKSDKEEVAAGLDAGADDFLTKPVNGGELRARISAGERILR 120 Query: 120 MQKSKDENQFL 130 MQ+ E L Sbjct: 121 MQREMVEKNRL 131 >gi|332880933|ref|ZP_08448603.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681107|gb|EGJ54034.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1366 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 4/120 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 LLVD + + V +F+ V A EA E + + ++ D M + Sbjct: 1116 LLVDDNVDLLDVMCRVFSHR-HKVLLAHDGIEAVAVIENNAV-DVIISDVMMPNMDGLEL 1173 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 H++ + + V L + E I +AG + ++ KPF L + + ++ Sbjct: 1174 CRHLKADINTSHIPVILLTAKNAPEDRIECYKAGCDGYVAKPFELRVLEARVESFLEHKR 1233 >gi|325916362|ref|ZP_08178637.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325537410|gb|EGD09131.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 242 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ + G+ V A +V + R + P+ +V+D M G Sbjct: 10 RVLVVDDDPDLRKLIGEFLSTHGYQVDVAENVADMRTRMAQH-RPDLIVLDVMMPGEDGL 68 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A V L + I G GA+ +L KP N L +R L + + Sbjct: 69 SAARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQ 128 Query: 123 SKDEN 127 + +E Sbjct: 129 ASNEQ 133 >gi|294627682|ref|ZP_06706264.1| two-component system regulatory protein, OmpR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598034|gb|EFF42189.1| two-component system regulatory protein, OmpR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 259 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 28 VLVVDDDPDLRKLIGEFLSAHGYQVDMAGNVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 86 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + ++ Sbjct: 87 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146 Query: 124 KDEN 127 +E Sbjct: 147 SNEQ 150 >gi|293393586|ref|ZP_06637896.1| transcriptional regulatory protein CpxR [Serratia odorifera DSM 4582] gi|291423921|gb|EFE97140.1| transcriptional regulatory protein CpxR [Serratia odorifera DSM 4582] Length = 232 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L GF + A +A + + L I + + Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFTIVVAHDGEQALSLLDSSIDLLLLDIMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQFLD 131 ++ Q +D Sbjct: 118 SNWSEQQQNVD 128 >gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|291286699|ref|YP_003503515.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290883859|gb|ADD67559.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 229 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L++D + ++ GF + + E + + +++D + G+ Sbjct: 6 KILVIDDDVELCELLSEYLEAEGFSIKAVHNGKEGASTVI-DSDFDLIILDVMLPGMGGF 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R + + L + D I G GA+ +L KP+N L ++ + + Sbjct: 65 DVLKTIRSV---KMTPILMLTAKGDDIDKILGLEIGADDYLPKPYNPRELLARIKAILRR 121 >gi|255657538|ref|ZP_05402947.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452790|ref|ZP_06894477.1| response regulator [Clostridium difficile NAP08] gi|296879958|ref|ZP_06903930.1| response regulator [Clostridium difficile NAP07] gi|296258338|gb|EFH05246.1| response regulator [Clostridium difficile NAP08] gi|296429072|gb|EFH14947.1| response regulator [Clostridium difficile NAP07] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + K L N GF+V ++ EA K + +ID S+ Sbjct: 1 MKRIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNK-FDLALIDISLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++ D+ V +L D ++ G GA+ ++ KPF L +R Sbjct: 60 GFTICTEIKEN---QDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTAL 116 Query: 119 QM 120 + Sbjct: 117 RK 118 >gi|187779726|ref|ZP_02996199.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC 15579] gi|187773351|gb|EDU37153.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC 15579] Length = 234 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + G VF+A +A E + + +++D M + Sbjct: 9 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDQD-IHLIIMDIMMPKMDGI 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 68 KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 124 >gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 8/134 (5%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +L+V+ ++++ + + V A+ E K+ + +++D M Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQS-FDLILLDVMMPN 59 Query: 59 VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F +R ++V + L + E + G G + ++ KPF+ L + Sbjct: 60 LNGFEVSKMIRSQ---SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEA 116 Query: 117 LPQMQKSKDENQFL 130 + + K+ N L Sbjct: 117 VLRRSYDKNVNNHL 130 >gi|158337064|ref|YP_001518239.1| two-component response regulator [Acaryochloris marina MBIC11017] gi|158307305|gb|ABW28922.1| two-component response regulator [Acaryochloris marina MBIC11017] Length = 363 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +R + + F V EA +E +P+ ++ D M Sbjct: 1 MSKVLVIEDQDDIRSIVCEILIAESFNVIEAEDGHIGV-LLAQEEMPDLVICDIMMPEFD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ P V +L + + G GAN +L KPF R+ L A+ Sbjct: 60 GYSVMTQLRQNPYLQSVPFIFLTAKASKTDLRLGMELGANDYLTKPFTRDELLGAVNAQI 119 Query: 119 Q 119 + Sbjct: 120 E 120 >gi|160893166|ref|ZP_02073954.1| hypothetical protein CLOL250_00712 [Clostridium sp. L2-50] gi|156865249|gb|EDO58680.1| hypothetical protein CLOL250_00712 [Clostridium sp. L2-50] Length = 229 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59 M+S+L++D + + + A E EK + +++D M + Sbjct: 1 MNSVLIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDM 60 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++++ +V V L + D E ++G R GA+ +L KPF L + L + Sbjct: 61 NGF-QVLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|150003574|ref|YP_001298318.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931998|gb|ABR38696.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1408 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + +R R + ++ + V EA+ EA + + + +++V D M + Sbjct: 1155 TILVVEDNKDMRAYIRSILAEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + L + E I R G + +LLKPF+ L + + + Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272 Query: 121 QKSKDE 126 +K + Sbjct: 1273 RKRFQQ 1278 >gi|325922587|ref|ZP_08184341.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546937|gb|EGD18037.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 242 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 11 VLVVDDDPDLRKLIGEFLSAHGYQVDVAENVAE-MRKSIAQRRPDLIVLDVMMPGEDGLS 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + ++ Sbjct: 70 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 129 Query: 124 KDEN 127 +E Sbjct: 130 SNEQ 133 >gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 223 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L + +R+V GF V E ++ + + +++D M G+ Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDY-DVVILDIMMPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V V L + G AGA+ +L KPF L +R L + Sbjct: 61 TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118 >gi|281177839|dbj|BAI54169.1| two-component response regulator [Escherichia coli SE15] gi|315299204|gb|EFU58458.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 16-3] gi|323976334|gb|EGB71424.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] Length = 225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|260599905|ref|YP_003212476.1| DNA-binding transcriptional regulator CpxR [Cronobacter turicensis z3032] gi|260219082|emb|CBA34437.1| Transcriptional regulatory protein cpxR [Cronobacter turicensis z3032] Length = 232 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + + L + GF V A +A + + + L + + + Sbjct: 1 MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SHWSEQQQ 125 >gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 788 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + G+ + G+ V A EA +F E + +++D + + Sbjct: 662 RILIAEDDPVSLLSGKRMLEKSGYSVTAAKDGLEALQFL-TEQDFDLILMDVQLPTMDGV 720 Query: 63 --IAHVRQMPLGTD---VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R+ G D + + + AG N ++ KP ETL+ + + Sbjct: 721 DATRAIREGRAGEDKASIPIIAMTAYAMTGDKEKFLEAGMNDYISKPVEMETLKEVIERV 780 Query: 118 PQM 120 + Sbjct: 781 MEK 783 >gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 904 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 10/135 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-----EKELLPNYLVIDESMEG 58 +L+V+ + R + + GF V A + EA +F + + + +++D M Sbjct: 769 VLVVEDDDMNRMAAQRMLVKLGFTVHTACNGQEALDFLAGQTPQAQPSVDLILMDIQMPV 828 Query: 59 VLEF--IAHVRQMPLG---TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + +R+ G + L +AG + L KP + A Sbjct: 829 MDGLEATRRIRENADGRFDPLTPIIALTAYAMAGDRERFLQAGLDDHLAKPVKVAEMLDA 888 Query: 114 MRELPQMQKSKDENQ 128 M+ + + Sbjct: 889 MKRALDRRAEAARKK 903 >gi|218130934|ref|ZP_03459738.1| hypothetical protein BACEGG_02536 [Bacteroides eggerthii DSM 20697] gi|217987278|gb|EEC53609.1| hypothetical protein BACEGG_02536 [Bacteroides eggerthii DSM 20697] Length = 390 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + L + F + A + +A E +KE P+ +++D M Sbjct: 26 KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVDKEH-PDLVLLDVMMPDLSGF 84 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 85 EVAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 144 Query: 121 QKSKD 125 +K Sbjct: 145 VAAKR 149 >gi|220907440|ref|YP_002482751.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864051|gb|ACL44390.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 240 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 16/138 (11%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL------------PNYL 50 +LLV+ + + N G+ V A+ A E + L Sbjct: 2 RILLVEDETELALPLSRVLNHEGYSVDIASDGETAIEKLRSAQSNPATQASTSPSTYDLL 61 Query: 51 VIDESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108 ++D + LE VR + L + ++ + G AGA+ +L+KPF Sbjct: 62 ILDWILPRLSGLEICQWVRSQR--QATPILMLTAKDTLDERVQGLDAGADDYLVKPFELR 119 Query: 109 TLRFAMRELPQMQKSKDE 126 L +R L + + DE Sbjct: 120 ELLARVRALLRRTAAIDE 137 >gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676] gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550] gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550] gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676] gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|167968526|ref|ZP_02550803.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis H37Ra] Length = 226 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + + R G+ V A++ A E P+ +++D + + Sbjct: 1 MTLVLVIDDEPQILRALRINLTVRGYQVITASTGAGAL-RAAAEHPPDLVILDLGLPDMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I + + V L D + AGA+ ++ KPF + +R + Sbjct: 60 G-IDVLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRR 118 Query: 121 QKSKDENQF 129 + E + Sbjct: 119 NTAAAELEQ 127 >gi|167761025|ref|ZP_02433152.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704] gi|167661404|gb|EDS05534.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + K L GF V A+S EA + + ++D S+ Sbjct: 1 MKRIFLVEDDKEIAKNLALLLRTEGFNVTHASSQSEAISVLDGN-RFDLALVDISLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++Q ++ V +L D ++ G GA+ +++KPF L +R Sbjct: 60 GFTVCTEIKQ---AQNIPVIFLTASGDEASVVTGLNMGADDYIIKPFRPRELTARIRTAL 116 Query: 119 QM 120 + Sbjct: 117 RK 118 >gi|158522749|ref|YP_001530619.1| two component, sigma54 specific, Fis family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511575|gb|ABW68542.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Desulfococcus oleovorans Hxd3] Length = 451 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + L +D GF + A++ EA + E P+ +++D M G+ Sbjct: 4 SVLIVDDEPSILQSLGGLLSDEGFEILTASNGYEALKLIETAS-PDIVLLDIWMPGIDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V + E + + GA F+ KP + + + A+ ++ Sbjct: 63 ETLKEIKAASPHIPVVIITGHGTIETAVNATKIGAFDFIEKPLSIDKVIVAIHNALNFRR 122 Query: 123 SKDENQ 128 ++EN+ Sbjct: 123 LEEENR 128 >gi|221068464|ref|ZP_03544569.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220713487|gb|EED68855.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LLLV+ +R + G V A A + P+ +V+D S+ G+ Sbjct: 7 LLLVEDDSAMRTTLQRTLMRRGLNVDVAADGPSALAHWQT-REPDAVVLDLSLPGLDGLQ 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R LG V L + G AGA+ +L KPF+ + L +R L + + Sbjct: 66 VLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124 >gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 230 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + ND G+MV A A E+ P+ +++D M G+ F Sbjct: 13 VLIVDDTPDNLAMLSDALNDAGYMVLVALDGLSALNRIER-RRPDLILLDAMMPGLDGFE 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ P D+ V ++ + ++ G G + ++ KP + + + + Sbjct: 72 TCRRIKEHPANADIPVLFMTALTESRHVVQGFEVGGSDYVTKPIQTDEVLARVAAHLRTS 131 Query: 122 K 122 + Sbjct: 132 R 132 >gi|325263000|ref|ZP_08129736.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. D5] gi|324032094|gb|EGB93373.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. D5] Length = 240 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ V+ + + A + +A P+ +++D + + I Sbjct: 9 ILVVEDDMPVKNLITTTLESQDYKYETAATGNQAV-MAAASGNPDIILMDLGLPDMDG-I 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ + V + D + AGA+ +L KPF+ E L +R + + Sbjct: 67 EVIRKIRTWSVAPVIVISARSDDRDKVEALDAGADDYLTKPFSVEELLARLRSTLRRIQ 125 >gi|320334816|ref|YP_004171527.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM 21211] gi|319756105|gb|ADV67862.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM 21211] Length = 1838 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD + VF A + +A E + +++D M Sbjct: 1718 KRVLVVDDDIRNIFALTAVLERHHMTVFTAENGRDAINMLESTPDIDVILMDVMMPELDG 1777 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ ++ + L + +GA+ ++ KP + E L +R Sbjct: 1778 YETTRLIRQNRKFKNLPIISLTAKAMPGDREKSIASGASDYISKPVHSEKLLSLLRVWLY 1837 Query: 120 M 120 Sbjct: 1838 R 1838 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL+V+ R+ L + +S EA + +V+D + + Sbjct: 1572 KNLLVVEDDLTQRENIVDLIGNGDVKTTAVSSGAEALGALAT-TAFDCIVLDLKLPDMSG 1630 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELP 118 F I +++ P + + + + R A S +LK + E L + Sbjct: 1631 FDLITTLQKNPAFRAIPIIVYTAQDLTRQQETQLRKAAKSIILKDVRSPERLLDEVTLFL 1690 Query: 119 QMQKS---KDENQFLD 131 ++ + + Q L+ Sbjct: 1691 HRVEANLPEAKRQILE 1706 Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 6/118 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + L ++ GFM A+ +A + P+ + +D S+ Sbjct: 1450 RTVLIVEDDATFAGILLDLAHERGFMALIASRGEQAITLAQT-YRPSAITLDLSLPDTSG 1508 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + H++ P+ + V+ + E + G + GA + K +R L A L Sbjct: 1509 WAVLDHLKHDPVTRHIPVHIISG---EEATLLGRKLGALDHVTKSGDRAALHQAFENL 1563 >gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli MS 187-1] gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli MS 187-1] gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120] Length = 290 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ ++ G+++ + + K+ +++D + G+ Sbjct: 38 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L + + G +GAN +L+KPF+ L +R + Sbjct: 96 GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 Query: 121 QKSKD 125 + + Sbjct: 155 HHALN 159 >gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|326790349|ref|YP_004308170.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541113|gb|ADZ82972.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 234 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + +V L G+ V + + EA ++ +++D M + Sbjct: 5 NILVVDDDLQIMEVLCKLLELEGYKVHSSFNGFEAIDYI-NNNSIQLVILDVMMPHLNGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ +V + L + + + G GA+ ++ KPFN L ++ + Sbjct: 64 TALLKIREKH-NVPIIMLSAKTEETDKVCGLSLGADDYIEKPFNTAELLARVKAQLRR 120 >gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + F V E E + +++D + + Sbjct: 4 RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEP-FDVVILDIMLPVHDGW 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + V L D E + G GA+ +L KPF+ L +R L + + Sbjct: 63 EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 Query: 123 SKDENQF 129 + Sbjct: 123 ESKSTKL 129 >gi|227537308|ref|ZP_03967357.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242811|gb|EEI92826.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 234 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLV+ V ++ + G+ V A +A E + + + +++D + + Sbjct: 1 MNEILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAV-DLVILDILLPQMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R TD+ V L E ++ G GA+ ++ KPF L+ +R L Sbjct: 60 GLDVCKAIR-DSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLL 118 Query: 119 QMQ 121 + + Sbjct: 119 RRK 121 >gi|225568924|ref|ZP_03777949.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM 15053] gi|225162423|gb|EEG75042.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM 15053] Length = 217 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+V+ + + + +D G++ F A +A + E++ + +++D + Sbjct: 1 MNKILIVEDEVPISNLIKESLSDAGYLCFCAFDGIQAADMVEQKRY-DLVLLDIMLPEIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + ++R + + V +L D + G ++GA ++ KPF L + + Sbjct: 60 GYELLEYIRPL----GIPVIFLTARSDVRDKVKGLKSGAEDYITKPFEIAELLARVETVL 115 Query: 119 QMQKSKDE 126 + Sbjct: 116 RRYGKTQR 123 >gi|154495137|ref|ZP_02034142.1| hypothetical protein PARMER_04184 [Parabacteroides merdae ATCC 43184] gi|154085687|gb|EDN84732.1| hypothetical protein PARMER_04184 [Parabacteroides merdae ATCC 43184] Length = 230 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LLV+ + + + + F V A + + + K P+ ++ D M + Sbjct: 5 KSILLVEDEASLSMIIKDALEEEDFQVITAGNGLQGIDRFYK-YAPDLIIADVMMPEIDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R +V V +L + ++ G GAN ++ KPF+ L + L Sbjct: 64 FEMIRRIRKENKEVPVLFLSARSSTDDIVFGFELGANDYVRKPFSLRELVVRAKALLIKY 123 Query: 122 KSKD 125 K ++ Sbjct: 124 KQEE 127 >gi|78185337|ref|YP_377772.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78169631|gb|ABB26728.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] Length = 244 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + R + G+ V A + P+ +++D ++ + Sbjct: 10 RVLVVDDEQKLTDLLRLELDVEGYDVQVAGDGASGLIQSQTNPTPDLIILDWNLPDFSGI 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G + L + + AG + +L+KPF+ + L +R + + Sbjct: 70 DICQRIRAH--GVTTPILMLTGHDEVTDRVKALDAGVDDYLIKPFSIDELMARLRAMHRR 127 >gi|301161481|emb|CBW21021.1| Putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1345 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M + +L+V+ + + L +D + +++A++ E + KE+LP+ ++ D M Sbjct: 1088 MTTLSVLVVEDNEDINNYITSLLDDK-YRIYQASNGEEGIKIA-KEILPSLIISDIMMPI 1145 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 EF +R + + +L + + +I G + +L KPFN E L+ + Sbjct: 1146 KDGFEFSQEIRSNLSTAHIPIIFLTAKAEDIDIIHATHIGIDDYLTKPFNSEILKAKVDN 1205 Query: 117 LPQMQKSKDE 126 L +K + Sbjct: 1206 LISQRKQLKK 1215 >gi|294675361|ref|YP_003575977.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] gi|294472978|gb|ADE82367.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] Length = 1334 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++ + +R + + + T+ EA + P+ ++ D M + Sbjct: 1082 TLVIAEDDEEIRNYLESELSK-DYDIHACTNGREALGEVIRTK-PDLVLSDIMMPEMDGN 1139 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + V L + E + GA+++++KPFN E LR + L Sbjct: 1140 TLCTRIKTNPNTNSIPVVLLTAKNRDEDKLESLETGADAYIVKPFNMEILRRTIMNLINK 1199 Query: 121 QKSKD 125 + Sbjct: 1200 HRLLR 1204 >gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + R GF V A + + ++ + +V+D M G+ + Sbjct: 2 RILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRY-DAIVLDIMMPGMNGY 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + L + + GA+ FL KPF+ L +R L + Sbjct: 61 TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRR-G 119 Query: 123 SKDENQFLDA 132 S++ L+A Sbjct: 120 SRERPVVLEA 129 >gi|253564225|ref|ZP_04841682.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_2_5] gi|251948001|gb|EES88283.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_2_5] Length = 1347 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57 M + +L+V+ + + L +D + +++A++ E + KE+LP+ ++ D M Sbjct: 1090 MTTLSVLVVEDNEDINNYITSLLDDK-YRIYQASNGEEGIKIA-KEILPSLIISDIMMPI 1147 Query: 58 -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 EF +R + + +L + + +I G + +L KPFN E L+ + Sbjct: 1148 KDGFEFSQEIRSNLSTAHIPIIFLTAKAEDIDIIHATHIGIDDYLTKPFNSEILKAKVDN 1207 Query: 117 LPQMQKSKDE 126 L +K + Sbjct: 1208 LISQRKQLKK 1217 >gi|238757995|ref|ZP_04619176.1| KDP operon transcriptional regulatory protein kdpE [Yersinia aldovae ATCC 35236] gi|238703749|gb|EEP96285.1| KDP operon transcriptional regulatory protein kdpE [Yersinia aldovae ATCC 35236] Length = 229 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R+ R G+ VFE+ ++ P+ +++D + Sbjct: 6 TNILIVEDEKEIRRFVRIALESEGWRVFESDTLQRGLIEAGT-RKPDLIILDLGLPDGDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + + + L E +A AGA+ +L KPF L +R + Sbjct: 65 LT-YIQDLRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH 123 >gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] Length = 268 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + + GF V + EA + V+D + G + Sbjct: 47 RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPY-DAAVLDIMLPGPDGI 105 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R G + + L + I G +GA+ +L KPF+ + L +R L + Sbjct: 106 SVLRSLR--ERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRR 163 >gi|166368457|ref|YP_001660730.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090830|dbj|BAG05538.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 9/128 (7%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------LLPNYLVIDE 54 LLL+D + + + G+ V A + EA E E+ +P+ ++ D Sbjct: 9 KQLLLIDDDPNLILLVKDYLEFRGYRVTTAENGPEALEILERGANTAKAAEIPDMIICDL 68 Query: 55 SMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 M + F+ +RQ + + V +L + + I G GA+ +++KPF E L Sbjct: 69 IMPEMDGHAFLEKIRQDSRFSCIPVIFLSPKGQSQDKITGLITGADVYMVKPFEPEELVA 128 Query: 113 AMRELPQM 120 + + Sbjct: 129 RVESSLKQ 136 >gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + +++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|146306940|ref|YP_001187405.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145575141|gb|ABP84673.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 787 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G V A EA E E+E + + +++D +M + + Sbjct: 665 RVLLVEDNPVNQMVAKGMLAKLGCQVLVAGHGGEALEALEREPV-DLVLMDCNMPVMDGY 723 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R ++ + L ++ AG N +L KPF RE L + Sbjct: 724 EASRRIRANGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDSWL 781 >gi|91215802|ref|ZP_01252772.1| two component transcriptional regulator, winged helix family protein [Psychroflexus torquis ATCC 700755] gi|91186268|gb|EAS72641.1| two component transcriptional regulator, winged helix family protein [Psychroflexus torquis ATCC 700755] Length = 225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+ + + K+ + + G+ + E + K + +++D M + Sbjct: 7 TILIAEDQVDIAKLLKKGLTEEGYQCLVVKNGEEVLKLV-KHNSISLILLDWMMPKLKGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + +L + E I G ++GAN ++ KPFN E L + ++ Sbjct: 66 DVCKQLR--SEHISTPIIFLTAKDTIEDTIEGLKSGANDYIKKPFNFEELLARIETHLRL 123 Query: 121 QKSKDE 126 DE Sbjct: 124 YYKIDE 129 >gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLL++ +R G V A S + KE P+ +V+D + G+ F Sbjct: 7 LLLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLF-KEQRPDLIVLDVMLPGIDGFE 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + L D ++ G +GA+ +++KP L +R + + Sbjct: 66 VCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRG 122 Query: 122 KSKDEN 127 + ++ + Sbjct: 123 ERENSD 128 >gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + +V + G+ V + E E + +++D + G+ Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAA-AEGRYSLVLLDVMLPGLSGLE 64 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R V L + G GAN ++ KPF E L +R + + Sbjct: 65 VLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQNGT 124 Query: 124 KDEN 127 K E+ Sbjct: 125 KTED 128 >gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC 10379] gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC 10379] Length = 238 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D +RK+ G++V EA++ + E + + +++D + + Sbjct: 4 RILIIDDEERIRKLLIMYLEKEGYIVDEASNGHDGLERLKYMDY-SCVLLDVQLPMLNGK 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +R+ V + + D + + G GA+ +++KPF+ L + + Q Sbjct: 63 SILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAILQR 119 Query: 121 QK 122 K Sbjct: 120 TK 121 >gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656] gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656] Length = 257 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + G+ V EA E E + +V+D ++ G+ Sbjct: 33 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENY-DLIVLDLNLPGMDGM 91 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + G AGAN ++ KPF+ + L +R L + + Sbjct: 92 ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 150 >gi|148254647|ref|YP_001239232.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406820|gb|ABQ35326.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 241 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+V+ + ++ R GF + A + A + + L P+ +++D + G Sbjct: 7 TLLMVEDDPEISRLVRDFMRREGFEIEVAENAA-AMDAVLRRLRPDLIILDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ D+ + L + D + G GA+ +++KPF L +R L + Sbjct: 66 SICRRLRQSD---DIPILMLSAKSDEIDRVVGLELGADDYMVKPFGPRELLARVRALLRR 122 Query: 121 QKSKDENQ 128 ++ + Sbjct: 123 AQASPRRE 130 >gi|15599296|ref|NP_252790.1| BfmR [Pseudomonas aeruginosa PAO1] gi|107103618|ref|ZP_01367536.1| hypothetical protein PaerPA_01004688 [Pseudomonas aeruginosa PACS2] gi|254236989|ref|ZP_04930312.1| hypothetical protein PACG_03014 [Pseudomonas aeruginosa C3719] gi|254242786|ref|ZP_04936108.1| hypothetical protein PA2G_03552 [Pseudomonas aeruginosa 2192] gi|9950302|gb|AAG07488.1|AE004826_6 BfmR [Pseudomonas aeruginosa PAO1] gi|126168920|gb|EAZ54431.1| hypothetical protein PACG_03014 [Pseudomonas aeruginosa C3719] gi|126196164|gb|EAZ60227.1| hypothetical protein PA2G_03552 [Pseudomonas aeruginosa 2192] Length = 246 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF+ L + + + Sbjct: 66 LCRELR-VGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 7/125 (5%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + + + VF+ + EA C + + ++D + + Sbjct: 1 MQEKILVVDDEQEISDLLELYLQNENYSVFKFYTAKEAL-ACIETTEIDIAILDIMLPDM 59 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R + L + I G GA+ ++ KPF + ++ Sbjct: 60 SGFTLCQKIRVNHAY---PIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQ 116 Query: 118 PQMQK 122 + K Sbjct: 117 LRRYK 121 >gi|300697830|ref|YP_003748491.1| OmpR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074554|emb|CBJ54105.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum CFBP2957] Length = 245 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R + GF V + + P +V+D M V Sbjct: 4 TKILVVDDDVELRDLLREYLSQQGFAVSVMHDG-DGLAARLERERPALVVLDLMMPKVDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A D+ V L D I G GA+ +L KPF+ L + + + + Sbjct: 63 LSALRDLRARNDDMPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122 Query: 122 KS 123 ++ Sbjct: 123 QA 124 >gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 1476 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1336 RKLFRERIRQQMENQ 1350 >gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] Length = 226 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + + GF + + + +++D + + F Sbjct: 4 NILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQP-FDAIILDVMLPKLNGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + + V L D I G GA+ +L KP N L +R + + + Sbjct: 63 -EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQ 121 >gi|224535913|ref|ZP_03676452.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM 14838] gi|224522473|gb|EEF91578.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM 14838] Length = 1344 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+V+ + +R+ + + F + EA + +A + KE + +V D M + Sbjct: 1098 TLLVVEDNKELRQYLVNGLSGL-FNMLEAENGQKALDIL-KEKEVDLIVTDVMMPVMDGA 1155 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+Q + +Y L + D + + G + GA+ ++ KPF+ L+ + + + Sbjct: 1156 KLCKLVKQNLRTCHIPIYMLSAKADIKYQLEGLQVGADDYIAKPFSMAILKAKIMNMLRT 1215 Query: 121 QK 122 + Sbjct: 1216 RH 1217 >gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 245 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + + + D + + + EA + + E + +++D M V Sbjct: 19 RRILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFD-ESKFDVVILDVMMPYVDG 77 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F A R +DV + L + ++ G GA+ ++ KPF L + + + Sbjct: 78 FEACQRIRER-SDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRV 136 Query: 122 K 122 + Sbjct: 137 E 137 >gi|157155566|ref|YP_001461856.1| DNA-binding transcriptional activator KdpE [Escherichia coli E24377A] gi|191167185|ref|ZP_03029004.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli B7A] gi|193065513|ref|ZP_03046581.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli E22] gi|193070665|ref|ZP_03051602.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli E110019] gi|194429076|ref|ZP_03061607.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli B171] gi|209917945|ref|YP_002292029.1| DNA-binding transcriptional activator KdpE [Escherichia coli SE11] gi|218553225|ref|YP_002386138.1| DNA-binding transcriptional activator KdpE [Escherichia coli IAI1] gi|256020632|ref|ZP_05434497.1| DNA-binding transcriptional activator KdpE [Shigella sp. D9] gi|260842907|ref|YP_003220685.1| DNA-binding response regulator KdpE in two-component regulatory system with KdpD [Escherichia coli O103:H2 str. 12009] gi|260853932|ref|YP_003227823.1| DNA-binding response regulator KdpE in two-component regulatory system with KdpD [Escherichia coli O26:H11 str. 11368] gi|260866828|ref|YP_003233230.1| DNA-binding response regulator KdpE in two-component regulatory system with KdpD [Escherichia coli O111:H- str. 11128] gi|293418793|ref|ZP_06661228.1| DNA-binding transcriptional activator KdpE [Escherichia coli B088] gi|300817790|ref|ZP_07098004.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 107-1] gi|300824873|ref|ZP_07104975.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 119-7] gi|300907869|ref|ZP_07125482.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 84-1] gi|300927203|ref|ZP_07142938.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 182-1] gi|301302170|ref|ZP_07208303.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 124-1] gi|301329222|ref|ZP_07222208.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 78-1] gi|307312601|ref|ZP_07592233.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309795444|ref|ZP_07689861.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 145-7] gi|331667042|ref|ZP_08367916.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli TA271] gi|331676348|ref|ZP_08377060.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli H591] gi|332281827|ref|ZP_08394240.1| KDP operon transcriptional regulatory protein KdpE [Shigella sp. D9] gi|157077596|gb|ABV17304.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli E24377A] gi|190902733|gb|EDV62463.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli B7A] gi|192926802|gb|EDV81428.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli E22] gi|192956053|gb|EDV86519.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli E110019] gi|194412907|gb|EDX29198.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli B171] gi|209911204|dbj|BAG76278.1| two-component response regulator [Escherichia coli SE11] gi|218359993|emb|CAQ97538.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli IAI1] gi|257752581|dbj|BAI24083.1| DNA-binding response regulator KdpE in two-component regulatory system with KdpD [Escherichia coli O26:H11 str. 11368] gi|257758054|dbj|BAI29551.1| DNA-binding response regulator KdpE in two-component regulatory system with KdpD [Escherichia coli O103:H2 str. 12009] gi|257763184|dbj|BAI34679.1| DNA-binding response regulator KdpE in two-component regulatory system with KdpD [Escherichia coli O111:H- str. 11128] gi|291325321|gb|EFE64736.1| DNA-binding transcriptional activator KdpE [Escherichia coli B088] gi|300400433|gb|EFJ83971.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 84-1] gi|300416820|gb|EFK00131.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 182-1] gi|300522647|gb|EFK43716.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 119-7] gi|300529487|gb|EFK50549.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 107-1] gi|300842722|gb|EFK70482.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 124-1] gi|300844459|gb|EFK72219.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 78-1] gi|306907303|gb|EFN37808.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|308120819|gb|EFO58081.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 145-7] gi|315059937|gb|ADT74264.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli W] gi|315255007|gb|EFU34975.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 85-1] gi|320198187|gb|EFW72791.1| DNA-binding response regulator KdpE [Escherichia coli EC4100B] gi|323153585|gb|EFZ39833.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli EPECa14] gi|323158861|gb|EFZ44872.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli E128010] gi|323179836|gb|EFZ65393.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli 1180] gi|323379501|gb|ADX51769.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323945072|gb|EGB41135.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|324016054|gb|EGB85273.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 117-3] gi|324116632|gb|EGC10548.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|331066266|gb|EGI38150.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli TA271] gi|331076406|gb|EGI47688.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli H591] gi|332104179|gb|EGJ07525.1| KDP operon transcriptional regulatory protein KdpE [Shigella sp. D9] Length = 225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|329889207|ref|ZP_08267550.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] gi|328844508|gb|EGF94072.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] Length = 453 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + V A E P+ +++D M G+ F Sbjct: 4 RILVVDDVEANVRLLEAKLTLEYYDVLTCHDGATAIALAGAE-QPDLILLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + I G AGA+ FL KP + L +R L ++ Sbjct: 63 ETCRRIKAAADTRHIPVVLVTALDGRHDRIKGLEAGADDFLSKPLDDVILMARVRSLTRL 122 Query: 121 QKSKDENQFLDA 132 + DE + + Sbjct: 123 KMVMDELREREE 134 Score = 76.4 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + +V + S E + ++++ + E Sbjct: 155 RVLIVDDNTLQAQVMAQELSRE-HRPLIEPSAEAGLETAR--GPVDLVIVNITSERFDGL 211 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 IA +R + + ++ D +++ GA+ L++P + E L +R + Sbjct: 212 RLIAQLRSKEPTRRLPILAVVDTQDRPRLLKALELGAHDLLIRPIDPEELAARVRTQVRR 271 Query: 121 QK 122 ++ Sbjct: 272 KR 273 >gi|312897331|ref|ZP_07756757.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310621549|gb|EFQ05083.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 224 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL + + + N G+ + +A E E+ + +V D M G Sbjct: 2 RLLLAEDEKELSTAVATILNASGYETDIVSDGVQAVEAAERNSY-DCMVFDIMMPGKDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A G V L + + + I G AGA+ +L KPF + L +R + + Sbjct: 61 TALSEIREKGDVTPVIMLTAKSEVDDRITGLDAGADDYLTKPFAVKELLARIRSVTRR 118 >gi|309778833|ref|ZP_07673604.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA] gi|308922357|gb|EFP67983.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + R GF V + + P +V+D M V Sbjct: 4 TKILVVDDDVELRDLLREYLTQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A DV V L D I G GA+ +L KPF+ L + + + + Sbjct: 63 LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122 >gi|293608084|ref|ZP_06690387.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828657|gb|EFF87019.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122199|gb|ADY81722.1| two component transcriptional regulator, winged helix family [Acinetobacter calcoaceticus PHEA-2] Length = 243 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + + + H G V A + +A E + + +++D M Sbjct: 13 KLILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHAAQP-IDLVILDIKMPELSG 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + +RQ V L + R GA+ F++KPFN + ++ + + Sbjct: 72 WEVLNKIRQKAA---TPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLR 128 Query: 120 MQKSKDE 126 + + Sbjct: 129 RTQQNQQ 135 >gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 223 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G++V +A E + + +++D + + Sbjct: 2 RILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEG-HYLGDAEPYDAIILDIGLPEMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R G + V L + +AG AGA+ ++ KPF+ + + +R L + Sbjct: 61 TALERWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRR 118 >gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From Mycobacterium Tuberculosis Length = 230 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+V+ + L GF T A ++ + +++D + G+ Sbjct: 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMSG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V V + + G GA+ ++ KP++ L +R + + Sbjct: 64 TDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1] gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92] gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92] gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] Length = 235 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + +R + G+ A + +A ++ P+++++D M + Sbjct: 1 MK-ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQ-QPDFIILDIMMPELD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + +L + + + G GA+ ++ KPF +R ++ + Sbjct: 59 SYKVCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIV 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|330810400|ref|YP_004354862.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378508|gb|AEA69858.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 236 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLLVD V + R G+ V A A + +P+ +++D + G Sbjct: 1 MSHLLLVDDDLEVLALLRKFLEQHGYSVDVAADG-TALWQAVERRVPDLIILDVMLPGDN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R V + L + + G GA+ +L KPF+ L +R + Sbjct: 60 GLVLCQRLRAE---HTVGIIMLTAMGELSDRVVGLELGADDYLTKPFDARELLARVRAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|307294458|ref|ZP_07574300.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306878932|gb|EFN10150.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 236 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++LV+ +R + + G+ V A+S E + + + +V+D + G + Sbjct: 5 TIILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPV-DLVVLDVMLPGTNGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +DV + ++ + I G GA+ +L KPF L +R + + Sbjct: 64 DLCRQIRRK---SDVPIIFISAKGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRR 120 Query: 121 QKSKD 125 + Sbjct: 121 VGVER 125 >gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] Length = 413 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + V A E+ E + +++D + + Sbjct: 1 MK-VLLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEA-FTYDLILLDVVLPKLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + L I G AGA+ +++KPF+ L +R + Sbjct: 59 GISLCRQLRSRHTT--TPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAIL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 4 NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 63 IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 119 Query: 120 MQKSKDEN 127 ++N Sbjct: 120 RYTYFNQN 127 >gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273] gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273] Length = 226 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTY-DLIVLDIMIPGIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC 43243] gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC 43243] Length = 239 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + G+ V EA E E + +V+D ++ G+ Sbjct: 15 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENY-DLIVLDLNLPGMDGM 73 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + G AGAN ++ KPF+ + L +R L + + Sbjct: 74 ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 132 >gi|148977382|ref|ZP_01813982.1| putaive two-component response regulator [Vibrionales bacterium SWAT-3] gi|145963334|gb|EDK28599.1| putaive two-component response regulator [Vibrionales bacterium SWAT-3] Length = 225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + V F G + A + + + +++D + + Sbjct: 1 MKRVLLVEDNREIAGVLFDYFECIGMELDYADNGELGLQLAMDNS-FDIIILDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + L E M+ G GA+ +L KPF+ + L M L + Sbjct: 60 GLTVCNKLRDQGNATPILMLTALDSREDMLKGFDHGADDYLTKPFDLDILEARMNALVRR 119 Query: 121 QKSK 124 + K Sbjct: 120 YRGK 123 >gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 243 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD VR GF V A + EA E + LV+D M + Sbjct: 18 RTVLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESH-DALVLDVQMPELDG 76 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 LG D+ + L IAG AGA+ +L KPF+ L + L + Sbjct: 77 VAVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRA 136 Query: 122 KSKDE 126 D Sbjct: 137 HHSDR 141 >gi|92117426|ref|YP_577155.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91800320|gb|ABE62695.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 221 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + G++V + +A F +++D + G+ Sbjct: 2 RVLVVEDDQRIAADVSRTLEASGYVVETVANGEDAW-FLGDTEDYGAVILDLGLPGMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L + + + G AGA+ +L KPF E L +R + + Sbjct: 61 AVLKRWRANGRHMPVLVLTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR 118 >gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 226 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G+MV A + +E + +++D + G+ Sbjct: 1 MK-ILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V L E + G AGAN +L+KPF+ L +R + Sbjct: 59 GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 Query: 121 Q 121 Sbjct: 118 H 118 >gi|121601666|ref|YP_989580.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis KC583] gi|12830428|emb|CAC29081.1| putative regulatory protein [Bartonella bacilliformis] gi|120613843|gb|ABM44444.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis KC583] Length = 240 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LVD + G+ V T+ A + P+ + D M + Sbjct: 9 QTIVLVDDDRNILTSLSFALETEGYRVESYTNGVSALKSLTLHP-PHLAIFDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L ++ + + Sbjct: 68 M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRF 126 Query: 122 KSKDE 126 ++++ Sbjct: 127 NARNQ 131 >gi|319943631|ref|ZP_08017912.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC 51599] gi|319742864|gb|EFV95270.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC 51599] Length = 237 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L++VD +R + + F V A + + +++D+ + G Sbjct: 6 RKLVVVDDDAKLRDLLNRYLTEQQFEVTLAADSAS-LNRLMQRESFDLIILDQMLPGEDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L + D I G GA+ ++ KPFN L + + + Q Sbjct: 65 LSIIRRLRAANDRTPIIMLTAKGDDVDRIIGLEMGADDYMQKPFNPRELVARVHAVLRRQ 124 >gi|317503555|ref|ZP_07961577.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315665297|gb|EFV04942.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 1372 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+VD S + + + + V A EA E + + P+ ++ D M + Sbjct: 1127 LLIVDDSEDYLAFMAEVLSQY-YHVRVAHHGKEALEDIKVQ-RPDVILSDVMMPEMDGNM 1184 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ D+ L V + G GA+ ++ KPF+ E L + L + Sbjct: 1185 LCKTLKGDRNTCDIPFIMLTARVADAHKLEGLALGADDYITKPFSIELLILRINNLIK 1242 >gi|315918654|ref|ZP_07914894.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313692529|gb|EFS29364.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1476 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1336 RKLFRERIRQQMENQ 1350 >gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 1476 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1336 RKLFRERIRQQMENQ 1350 >gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment'] Length = 683 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + + R + L G V A + E E+E + +++D M + Sbjct: 379 RILLAEDNPVNRILAVRLLEKAGHTVAVAGTGREVLVTLERE-QFDLVMMDVQMPEMDGI 437 Query: 63 --IAHVRQMPLGT--DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R+ G+ + + L AG + +L KP + L A+ L Sbjct: 438 SATAAIRERERGSGAHLPILALTAHAMNGDRERCLAAGMDDYLSKPIQAKALYEAIARLC 497 Query: 119 QMQKSKDENQFL 130 D N+ L Sbjct: 498 ARASGLDHNESL 509 >gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 227 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + R + GF V +A E+ + +V+D + + F Sbjct: 2 RVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQA-TEITYDVIVLDLMLPSLDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L + G GA+ +L KPF+ + L +R L + Sbjct: 61 EVCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRR 118 >gi|222107067|ref|YP_002547858.1| two component response regulator [Agrobacterium vitis S4] gi|221738246|gb|ACM39142.1| two component response regulator [Agrobacterium vitis S4] Length = 229 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + D GF V + F + + +V+D M + Sbjct: 1 MTRVLLIDDDLEFTGLLCEYLTDEGFDVLSTDDGAKGLAFVDSGAT-DIIVLDVMMPIMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + +++ + L D + I G GA+ ++ KP + L +R + + Sbjct: 60 GV-DVLQNIRKSSEIPIVMLTARGDDKDRITGLDLGADDYVSKPCSPGELVARLRAILRR 118 >gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLV+ + + ++ + V A EA +KE + +++D + Sbjct: 3 KRILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEK-FDLILLDLMLPKVNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E + H+R+ + V V + + G GA+ ++ KPF+ L ++ + Sbjct: 62 MELLKHIRE---TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIR 118 Query: 120 MQKSKDENQ 128 E + Sbjct: 119 RATVYAETE 127 >gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 230 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+V+ V + G+ V A + E +++D + G+ L+ Sbjct: 6 ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEA-ALVILDVMLPGMTGLD 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R G V V L E +AG + GA+ +L KPF E L + L + Sbjct: 65 LCQSLRA--EGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRG 122 Query: 122 KSKD 125 + + Sbjct: 123 REQR 126 >gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia] gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LLV+ +R+ GF V A E + +E+ + +ID + + + Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGL-YMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R G V L ++ + G + GA+ +L+KPF+ E L + L + Sbjct: 61 ELIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118 >gi|94264089|ref|ZP_01287888.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455505|gb|EAT05695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 493 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + G V A + A E E++ P+ +V D M + Sbjct: 3 RKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQP-PDLVVTDIRMPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + V + E + + GA ++LKPF E + +R++ + + Sbjct: 62 IEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQR 121 Query: 122 KSKD 125 + + Sbjct: 122 QGEA 125 >gi|94269909|ref|ZP_01291598.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451023|gb|EAT01990.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 493 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + G V A + A E E++ P+ +V D M + Sbjct: 3 RKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQP-PDLVVTDIRMPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + V + E + + GA ++LKPF E + +R++ + + Sbjct: 62 IEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQR 121 Query: 122 KSKD 125 + + Sbjct: 122 QGEA 125 >gi|24373973|ref|NP_718016.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24348419|gb|AAN55460.1|AE015683_7 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 237 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 4/120 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + R + G V A + E C + P+ +++D M + Sbjct: 11 MSRILLVDDDPLFRVWLTDVLKAQGHEVKCAVNGVEGLT-CIRSFAPDIVMLDLVMPQMD 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + L + E I GA+ FL KPF+ + L ++ + + Sbjct: 70 GFELL---QARECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFSIKELLVRLQAIERR 126 >gi|93007292|ref|YP_581729.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] gi|92394970|gb|ABE76245.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] Length = 974 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 5/119 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLEF 62 +L+V+ S +K+ + G+ A +A + + + + +++D M + Sbjct: 857 ILVVEDSPTNQKIACKMLAKLGYRSVVAEDGQQALDILQAQRQEIDLILMDCRMPVMDGL 916 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R G D+ + L E A + G + FL KP N++ L+ + L + Sbjct: 917 QATQAIRAQ--GDDIPIVALTANNTEEDRSACLKVGMDEFLAKPINKDKLQDVLTALIK 973 >gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 7/135 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + G+ V + E E + +++D + G Sbjct: 1 MQHILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVAL-ETNYDLILLDLMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + + L + G +GA+ +L KPF E L MR + Sbjct: 60 GLEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116 Query: 119 QMQKSKDENQFLDAI 133 + ++ EN+ + ++ Sbjct: 117 RREEHI-ENKHVSSL 130 >gi|325291487|ref|YP_004277351.1| two component response regulator [Agrobacterium sp. H13-3] gi|325059340|gb|ADY63031.1| two component response regulator [Agrobacterium sp. H13-3] Length = 249 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ LVD + G+ V T A + P + D M + Sbjct: 8 MQTIALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARP-PQLAIFDIKMPRMD 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ V +L + + + G + GA+ F+ KPF++ L ++ + + Sbjct: 67 GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 125 Query: 121 QKSKD 125 S++ Sbjct: 126 ASSRE 130 >gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V A E + + +V+D + + Sbjct: 1 MTCVLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDV-DLIVLDLGLPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVCRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|311893560|dbj|BAJ25968.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ +R+ +G+ V A E + + L++D + + Sbjct: 22 RVLLVEDDETIRRSIALALERYGYRVATAPDGLSGLEAFREGGH-DLLILDVMLPHLDGI 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + + + +++G AGA+ +++KP + L +R L + Sbjct: 81 GLCRRIRES---SQAPILMMSARGHSLDVVSGLEAGADDYVVKPVDTTVLVARIRSLLRR 137 >gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] Length = 234 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + GF + A E +E + +++D + G+ Sbjct: 11 TRVLIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQEN-FDIILLDVMLPGMDG 69 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR + T+V + L + E + G GA+ ++ KPF L ++ + Sbjct: 70 IEICRRVRAV---TNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALR 126 Query: 120 MQKSKDEN 127 + E+ Sbjct: 127 RRDISTED 134 >gi|291537655|emb|CBL10767.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291537790|emb|CBL10901.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 223 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ +V+ +R++ R+ + G+ V E + EK +P+ +++D + G Sbjct: 1 MATIYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKN-IPSLILLDIMLPGED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R DV V + + + G GA+ ++ KPF L ++ L Sbjct: 60 GLDILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALL 119 Query: 119 QMQKSKDENQFL 130 + +E+ L Sbjct: 120 RRTSRMNEDSQL 131 >gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 227 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V + G+ A + EA E + +++D + + Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKF-GNGNWDLILLDVMLPNISGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L ++G GA+ ++ KPF E L +R ++ Sbjct: 63 EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122 Query: 123 SKDENQ 128 E + Sbjct: 123 VVKEEE 128 >gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803] gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232] gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|330988050|gb|EGH86153.1| sensory box protein/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 705 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D VR + L + G+ A S E + P+ +++D M G+ Sbjct: 7 TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ ++ + L + ++G AGA +L KP + L +R L ++ Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEHSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125 Query: 121 Q 121 + Sbjct: 126 K 126 >gi|330820701|ref|YP_004349563.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] gi|327372696|gb|AEA64051.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] Length = 248 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ V A + E R E P+ +V+D M G Sbjct: 9 VLIVDDDRGIRELVGQYLEKNSIRVSLAANGREMRATLEYG-APDLIVLDVMMPGDDGLV 67 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L + I G GA+ +L KPF L +R + + Sbjct: 68 LCRELRA-GKFRSVPVVMLTARDEETDRIVGLEMGADDYLTKPFAVRELYARIRAVLRRA 126 Query: 122 KS 123 + Sbjct: 127 RM 128 >gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 237 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L++D + ++ G++V E + ++V+D + Sbjct: 3 KRILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDY-AFVVLDVMLPTLNG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +RQ T V V L D I G GA+ +L KPFN L +R + + Sbjct: 62 FDVLRRIRQN---TQVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQR 118 Query: 120 MQKS 123 + Sbjct: 119 RSDA 122 >gi|326443818|ref|ZP_08218552.1| putative two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 1763 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1643 KVLIVDDDIRNVFALTSVLEQQGLTVLYAENGREGIEVLEQHDDVQVVLMDIMMPEMDGY 1702 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1703 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWVRA 1762 Query: 121 Q 121 + Sbjct: 1763 R 1763 >gi|209520041|ref|ZP_03268818.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209499526|gb|EDZ99604.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 246 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +VR + GF + E+E P+ +V+D M Sbjct: 5 VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G D+ V ++ I G GA+ +L KPF+ L ++ + + + Sbjct: 64 ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLVRIQTVLRRR 121 >gi|253698922|ref|YP_003020111.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251773772|gb|ACT16353.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 456 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD H++R G+ V A + +A +E P+ +++D + G+ Sbjct: 5 KIMVVDDEHLIRWSLEQNLKKQGYEVVTAGTGEDALRLA-REEQPDLVLLDYHLPGINGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R L D+ V + + E + R GA ++ KPFN + + +R+ + + Sbjct: 64 EVLQRIKELDEDILVIMVTAQGGLETAVNTMRHGAYDYINKPFNLDEMALVIRKALETSE 123 Query: 123 SKDENQFLDA 132 + E L + Sbjct: 124 LRREVVQLRS 133 >gi|172039491|ref|YP_001805992.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700945|gb|ACB53926.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 335 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD ++ + + G+ A S +A E K P+ +++D M + Sbjct: 14 ILVVDDIRKNLQLLIEILDTSGYGTTFAISGKQALERA-KVTEPDLILLDLMMPEMNGLE 72 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + V +L + +I +GA ++ KPF L ++ ++ Sbjct: 73 VCKQLKKNAKTEQIPVIFLTAATETNYLIEAFESGAVDYVTKPFKTPELLARIKTHLDLK 132 Query: 122 KSKDENQ 128 ++KDE + Sbjct: 133 RTKDELK 139 >gi|162453117|ref|YP_001615484.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161163699|emb|CAN95004.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 153 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + D F AT+ + ++E P+ +++D M + Sbjct: 33 KRILVVEDEQDTAAMIARFLGDE-FDTVVATNGVDGLALAQQEPRPDLVIVDIMMPKLDG 91 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ V + +L + D +IAG +AGA ++ KPF + L+ +R+ Sbjct: 92 VSMTKRLREHEPTRRVPIIFLTAKSDPMDVIAGIQAGARHYITKPFVLDDLKKKVRKAV 150 >gi|119952783|ref|YP_950374.1| putative two-component system response regulator [Arthrobacter aurescens TC1] gi|119951913|gb|ABM10822.1| putative two-component system response regulator [Arthrobacter aurescens TC1] Length = 259 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAH 65 +++ +R +F GF V A+S E E KE P+ + ID + A Sbjct: 9 VIEDDEDIRAAVAEIFRQSGFAVHAASSGSEGLERV-KEHNPDIVTIDIGLPDFDGLEAS 67 Query: 66 VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125 R++ +D +V + D + G AGA+ ++ KPF LR ++ + + +S Sbjct: 68 -RRIRTFSDAYVIIVSGRADEADALMGFEAGADDYITKPFRPRELRARIKAMLRRPRSTH 126 Query: 126 EN 127 +N Sbjct: 127 QN 128 >gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATY-DLIVLDIMIPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + G+ V A E KE + +V+D + + + Sbjct: 2 RILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGL-ILAKESEYDVIVLDVMLPSIDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V +L D + G GA+ +L+KPF L +R L + Sbjct: 61 TV-LKTLRATQTTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARR 117 >gi|170748891|ref|YP_001755151.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655413|gb|ACB24468.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 251 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 10/133 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + V A + + E + +V+D + G Sbjct: 21 ILVVEDDREISALIARYLRGNDCRVTLAGDGTD-MDRVLAEARIDLIVLDLMLPGEDGLS 79 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + + L + + I G GA+ +L KPFN L +R + + Sbjct: 80 LCKRLR---GTSQIPILILTAKSEDVDRILGLELGADDYLAKPFNPRELLARIRAILRRV 136 Query: 122 KSK----DENQFL 130 ++ DE + L Sbjct: 137 AAEAPDADERRRL 149 >gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42] gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42] Length = 227 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 7/128 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + V + F GF E + +E + +++D + + Sbjct: 1 MK-ILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDW-DLVILDIMLPSMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L + + G GA+ ++ KPF+ TL ++ + Sbjct: 59 GVTICRKIRE---TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVI 115 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 116 RRYRATGQ 123 >gi|149178311|ref|ZP_01856903.1| putative response regulator [Planctomyces maris DSM 8797] gi|148842837|gb|EDL57208.1| putative response regulator [Planctomyces maris DSM 8797] Length = 157 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ D +H ++ D G+ F A E E E+ P+ +++D M Sbjct: 11 KILIADDNHQNCELLDAYLLDEGYETFMAYDGKETLEKV-AEIDPDLILLDIMMPKLSGY 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A ++Q D+ + + + + +AG + FL KP NR L +R L ++ Sbjct: 70 EVCAQLKQSDETKDIPILVITALNEMGDIEKSVQAGCDDFLTKPVNRIELTTRVRSLLRV 129 Query: 121 QKSKDENQFLDA 132 + E L A Sbjct: 130 RHLTHERDRLLA 141 >gi|154250536|ref|YP_001411360.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154486|gb|ABS61703.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 257 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM--EGVL 60 SLLLVD +R+ R + G ++ EA A E + +++D + + Sbjct: 20 SLLLVDDDPDIREEMRTYLSANGMIITEAADAASALEMF-SGGKFDLVILDLLLGADNGF 78 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +RQ + + + + G GA+ +++KP N L +R L + Sbjct: 79 DVLREIRQ---THSTPCIMVTGQSEATDKVVGLELGADDYVVKPVNLRELLARIRALLRR 135 >gi|150021690|ref|YP_001307044.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149794211|gb|ABR31659.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 222 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R + + G+ V EA + E R+ KE + +++D + L Sbjct: 1 MKRILIVEDDETLRDLLKRYIKSEGYEVDEAENNFEMRKKLSKERY-DLVLLDIMLPDGL 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 L + + + + + I G GA+ ++ KPFN + ++ + Sbjct: 60 STDELPEIKVLYPKLGIIIVSAKDNDSDKIYGLEIGADDYVTKPFNPREVVARIKAFFRR 119 Query: 121 QKSKDE 126 + E Sbjct: 120 ISGERE 125 >gi|121998947|ref|YP_001003734.1| response regulator receiver protein [Halorhodospira halophila SL1] gi|121590352|gb|ABM62932.1| response regulator receiver protein [Halorhodospira halophila SL1] Length = 120 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ + G+ V EA +A + + ++ D +M + Sbjct: 1 MAKILAVDDSASMRQMVTYTLKQQGYEVTEAVDGTDALTKAKAGG-FDLVITDVNMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R +P + L E EK G AGA +L+KPF+ + L ++++ Sbjct: 60 GITLVRELRGLPAFKFTPILLLTTESAPEKKQEGKAAGATGWLVKPFDPDQLVNTIKKVV 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|116493790|ref|YP_805524.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116103940|gb|ABJ69082.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ +A S EA +++D M + Sbjct: 1 MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + + + I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDEN 127 +++ N Sbjct: 119 SQNEVTN 125 >gi|331090774|ref|ZP_08339621.1| hypothetical protein HMPREF9477_00264 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399882|gb|EGG79541.1| hypothetical protein HMPREF9477_00264 [Lachnospiraceae bacterium 2_1_46FAA] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+VD +R + + ++ + + P+ L++D + Sbjct: 1 MNKPLILVVDDDKAIRSLITTTLETQEYRYHAVSNGMQGILEVASQK-PDVLLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I ++++ ++V + + + + I GA+ +L KPF+ + + +R + Sbjct: 60 MDG-IKVIQKVRSWSNVPIIVISSRSEDKDKIQALDLGADDYLTKPFSIDEILARIRVVL 118 Query: 119 QMQK 122 + ++ Sbjct: 119 RRER 122 >gi|295132769|ref|YP_003583445.1| two-component system sensor histidine kinase/response regulator,hybrid ('one-component system') [Zunongwangia profunda SM-A87] gi|294980784|gb|ADF51249.1| two-component system sensor histidine kinase/response regulator,hybrid ('one-component system') [Zunongwangia profunda SM-A87] Length = 1351 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 5/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LL+D + + + + + A + E K +P+ +V D M ++ Sbjct: 1098 ILLIDDNPDIHHYLSSIL-KEKYDLLHALNGQEGINMAIKH-VPDLIVSDIMMPEKSGID 1155 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ T + + L + E +I G GA+ ++ KPF+ L+ +R L + Sbjct: 1156 LTNTLKSKKETTHIPIILLSAKDAQESIITGYNEGADDYITKPFSTAILQARIRNLLDRK 1215 Query: 122 KSKDENQFLD 131 S + + L Sbjct: 1216 FSL-QKELLQ 1224 >gi|262166699|ref|ZP_06034436.1| transcriptional regulator CpxR [Vibrio mimicus VM223] gi|262170378|ref|ZP_06038056.1| transcriptional regulator CpxR [Vibrio mimicus MB-451] gi|261891454|gb|EEY37440.1| transcriptional regulator CpxR [Vibrio mimicus MB-451] gi|262026415|gb|EEY45083.1| transcriptional regulator CpxR [Vibrio mimicus VM223] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF + EA + +++D M + Sbjct: 1 MAHILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAV--TDQIDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKS 123 ++ Sbjct: 118 TQN 120 >gi|256425390|ref|YP_003126043.1| Fis family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256040298|gb|ACU63842.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Chitinophaga pinensis DSM 2588] Length = 394 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 1/130 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L++D +RK + + G+ V EA E + K+ + ++ D M + Sbjct: 1 MASILIIDDEKSIRKTLSEILSYEGYKVEEAADGAEGFKLF-KDKQYDAVLCDIKMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + TDV + + + + + + GA ++ KP + L +R Sbjct: 60 GLEFLEKAREINTDVPIIMVSGHGNIDTAVEAVKKGAYDYISKPPDLNRLLITLRNAMDK 119 Query: 121 QKSKDENQFL 130 E + L Sbjct: 120 TNLVTETKTL 129 >gi|254519614|ref|ZP_05131670.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226913363|gb|EEH98564.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 234 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+V+ + + G+ VF+ + E E KE + ++D M Sbjct: 1 MKSYNVLVVEDEKEIADAIEIYLKNQGYNVFKGYNGIEGLEIISKEE-IHLAIVDIMMPR 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ D V L + + I G GA+ ++ KPF L + Sbjct: 60 MDGIAMTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPLELLARVNSQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|224372199|ref|YP_002606571.1| chemotaxis response regulator [Nautilia profundicola AmH] gi|223588330|gb|ACM92066.1| chemotaxis response regulator [Nautilia profundicola AmH] Length = 125 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD S +R++ + G+ V +A EA E + ++ D +M + Sbjct: 1 MK-ILVVDDSSTMRRIIVNTLARLGYKDVVQAADGVEAWEVMQANPDIGVVITDWNMPNM 59 Query: 60 --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 LE + +R D+ + + E ++I +AG N++++KPF + L+ ++ + Sbjct: 60 NGLELVKKIRAEEKYKDIPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLQAV 119 Query: 118 P 118 Sbjct: 120 L 120 >gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermomicrobium roseum DSM 5159] gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermomicrobium roseum DSM 5159] Length = 239 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ ++ R+ G+ V A + A E P+ +++D + G+ Sbjct: 1 MPTILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFA-RPDLVILDIMLPGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 F +R+ + V + L + G GA+ +L KPF+ L ++ Sbjct: 60 GFQVCRQLREQ---STVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVK 113 >gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1] gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1] Length = 243 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 5/119 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD VR G+ V A P+ +V+D M Sbjct: 19 QRILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAA-WEPDAVVLDVMMPVLDG 77 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L +R M G + L + + G AGA+ +L+KPF + L +R L Sbjct: 78 LGVCRQLRAM--GDRTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALL 134 >gi|261407257|ref|YP_003243498.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283720|gb|ACX65691.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 224 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD +RK+ F G+ V A EA EL P+ +++D +M Sbjct: 1 MHKILIVDDEADLRKLLTDYFEINGYFVMTAKDSREAMRKV--ELGPDLVLLDINMPEES 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + +L ++ IAG RAG + ++LKPF+ L + Sbjct: 59 GLEICERIR---GFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHL 115 Query: 119 QMQK 122 + ++ Sbjct: 116 RREQ 119 >gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 224 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + K+ + G+ V +A E + E + +++D + + F Sbjct: 2 KVLIVEDDKNLSKLIAKRLKEEGYDVVQAYDAEEGLNYANYEN-FDIIILDLMLPKMSGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + L + E + G GA+ +L KPF+ L ++ L + K Sbjct: 61 YIIESLRNKKIKTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSK 120 Query: 123 SKDENQFLD 131 DE L Sbjct: 121 DIDEISKLK 129 >gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W] gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|332652704|ref|ZP_08418449.1| regulatory protein VanR [Ruminococcaceae bacterium D16] gi|332517850|gb|EGJ47453.1| regulatory protein VanR [Ruminococcaceae bacterium D16] Length = 238 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +++VD + + + G+ V + + +A E C ++ + ++D + + F Sbjct: 11 IMIVDDEAAIADLVDVYLKNEGYTVHKFYTATQALE-CVEQKRLDLAILDVMLPDMDGFT 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ L + L +V+ I G GA+ ++ KPFN L ++ + Sbjct: 70 LCQKIRESHLF---PILMLTAKVEDMDKITGLTLGADDYITKPFNPLELVARVKTQLRR 125 >gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + + + + +++ S EA + + E+ + ++D M + Sbjct: 3 TNILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSID-EIKYDLAILDVMMPVMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R+ V L +V+ I G GA+ ++ KPF+ + ++ + Sbjct: 62 FKLCQKIREKYNF---PVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 226 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + + + D G++V A EA F + +++D + + Sbjct: 2 RILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEA-HFLGDTEPYDCVILDLGLPKIDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V L + ++G AGA+ +L KPF+ E L +R L + Sbjct: 61 SVLERWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120 Query: 123 SKDE 126 + Sbjct: 121 GHAQ 124 >gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016] gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 242 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + GF ++++ + +A E E ++D + + F Sbjct: 14 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESE-QLELAILDVMLPDIDGF 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + V L + + I G GA+ ++ KPF L ++ + Sbjct: 73 TLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 129 >gi|194434012|ref|ZP_03066283.1| KDP operon transcriptional regulatory protein KdpE [Shigella dysenteriae 1012] gi|194417777|gb|EDX33875.1| KDP operon transcriptional regulatory protein KdpE [Shigella dysenteriae 1012] gi|320182572|gb|EFW57462.1| DNA-binding response regulator KdpE [Shigella boydii ATCC 9905] gi|332096623|gb|EGJ01616.1| KDP operon transcriptional regulatory protein kdpE [Shigella dysenteriae 155-74] Length = 225 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|197116776|ref|YP_002137203.1| response regulator [Geobacter bemidjiensis Bem] gi|197086136|gb|ACH37407.1| response regulator [Geobacter bemidjiensis Bem] Length = 204 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 8/137 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + + + + V A S EA E P+ +++D M + Sbjct: 4 KKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEAL-LALAENRPDLILLDVMMPEMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ D+ V ++ D G +AGA FL KP N L + + Sbjct: 62 LEVCRILKDDSRYRDIPVIFVTALSDEVDESRGFKAGAVDFLSKPVNPVILSHRVAVHLE 121 Query: 120 MQKSKD----ENQFLDA 132 +Q K+ +NQ L Sbjct: 122 LQSQKEALTRKNQELQE 138 >gi|110634491|ref|YP_674699.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285475|gb|ABG63534.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 240 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD +R + + + GF V A + EAR L + LV+D M G + Sbjct: 21 LLVVDDDTRIRTLLKRFLTEEGFRVTVAANAAEARRKL-AGLDFDLLVLDVMMPGEDGVG 79 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ DV + L + E + G +AGA+ +L KPF+ L + + + Sbjct: 80 LTRSLRQE---RDVPILMLTALSETESRVTGLQAGADDYLPKPFDPRELVLRVNNILRR 135 >gi|332876941|ref|ZP_08444694.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685049|gb|EGJ57893.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 249 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + GF V A + E E +KE + ++D M Sbjct: 15 KRILLVEDDPNFGTVLKDYLVMSGFDVVLAKNGMEGFEKFKKET-FDMCILDVMMPYKDG 73 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + +L E +I G R+G + +L KPF+ E L +R + Q + Sbjct: 74 FTLAKEIREKNEKIPIIFLTARTMREDVIKGYRSGGDDYLNKPFDSEILLMKIRSMLQRK 133 >gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] Length = 231 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLLV+ +R + + V A EA EF E + +V+D ++ + Sbjct: 1 MK-LLLVEDETALRNIIAKGLRRCNYSVDLAADGEEALEFYEV-YDYDLIVLDLNLPKID 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R ++ + L + E +I G GAN +L+KPF+ L +R L + Sbjct: 59 GIEVLRRVRSNNNEIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRR 118 >gi|295101441|emb|CBK98986.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R++ G EA S A E+ + ++D + G+ Sbjct: 1 MVKVLVVEDEASIREMIALNLRLAGMEAVEADSAEAALPLLEQRPGCDAAILDVMLPGMN 60 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + + L + + I G GA+ ++ KPF+ L + L Sbjct: 61 GFSLCETIRRTD--QKIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALC 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|255525634|ref|ZP_05392568.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185521|ref|ZP_06853931.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255510724|gb|EET87030.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050355|gb|EFG89779.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 224 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + V A + EA + E + +V+D M + Sbjct: 5 TILVVDDDKDIRDMINIYLVNQDMNVHTAANGIEALDILE-NTKVDLIVLDVMMPKMDGM 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ +V + L ++D I G GA+ ++ KPFN L ++ + K Sbjct: 64 KACMKIREKL-NVPIIILSAKIDDADKILGLTIGADDYVGKPFNPLELLARIKSQLRRYK 122 Query: 123 SKDEN 127 + N Sbjct: 123 QLNNN 127 >gi|255527239|ref|ZP_05394121.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188327|ref|ZP_06856719.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509063|gb|EET85421.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047453|gb|EFG86895.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 226 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + + + G+ + + + E E +KE P+ +++D + + Sbjct: 1 MK-ILVIDDEKSILNLIKMNLKLEGYEIIVSMNGIEGIEKFKKEK-PDLVILDIMLPDIS 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + D+ V + + + G + GA+ ++ KPFN L ++ + + Sbjct: 59 GHEVIQKFQEVNNDIPVIMVTAKSQINDKLLGLQLGADDYITKPFNSTELILRIKAITKR 118 Query: 121 QKSKDENQ 128 KD + Sbjct: 119 ITKKDREE 126 >gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W] gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 233 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|198284942|ref|YP_002221263.1| winged helix family two component transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666606|ref|YP_002427627.1| transcriptional regulator OmpR, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249463|gb|ACH85056.1| two component transcriptional regulator, winged helix family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518819|gb|ACK79405.1| transcriptional regulator OmpR, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 245 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD +R + GF+V A S + E+E L+ M G F Sbjct: 6 KILLVDDDPRLRTMLVRYLEGQGFIVHAAASGVQMDRQLEREYYDLLLLD-VLMPGEDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L D + G GA+ +L KPF + L +R + + Sbjct: 65 SICQRLRVQE--PHLPIIMLTARGDLADRVQGLDVGADDYLSKPFEPQELVARIRAVLRR 122 Query: 121 QK 122 + Sbjct: 123 SQ 124 >gi|182412958|ref|YP_001818024.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177840172|gb|ACB74424.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1896 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ V A + +A E + +++D M + Sbjct: 1776 RKILVVDDDARNIFALTTMLENYEMEVISAMNGRQAIELLQSHGEIGAVLMDIMMPEMDG 1835 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ P + + + L + AGA+ ++ KP N L +R Sbjct: 1836 YETMREIRKDPRFSTLPILALTAKAMKGDRDKCLAAGASDYIAKPVNTNELLSLLRVWLY 1895 Query: 120 M 120 Sbjct: 1896 R 1896 Score = 80.2 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ + I R L + A + EA E + + V+D + + Sbjct: 1630 KRLLIVEDNAIERDSIVQLLAHDDIEIVTAGTGAEALEQLLDRPV-DCCVLDLRLPDMSG 1688 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + V++ P +V V + + + A S L+K + E L Sbjct: 1689 FELLDRVQREPALREVPVVVFTGKDLSTEEEHRLKTVAKSVLVKDVQSPERLFD 1742 Score = 68.3 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 9/122 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+V+ +V L + GF AT ++ P + +D + +L + Sbjct: 1509 TLLIVEDDPHYARVLLGLARERGFKGIVATRGAA-ALALARQHQPTAITLDVLLPDMLGW 1567 Query: 63 IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMREL 117 ++ P + V + + E+ GA ++ +KP E L ++ Sbjct: 1568 TVLNNLKLDPATRHIPVQIISV---EEERSHALAHGAFAYTVKPTTTEGLQQCFDRIKRY 1624 Query: 118 PQ 119 + Sbjct: 1625 VE 1626 >gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 891 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD V A + + ++ + +++D + + Sbjct: 771 KKVLIVDDDMRNIYATTIALESKQVEVLFAENGLSCLKVLKEHPDVDLILMDIMLPEMDG 830 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +RQMP + + L + + AGA+ ++ KP E L + Sbjct: 831 YETMRALRQMPGFGTLPIIALTAKAMKDDKDKCLEAGASDYMSKPVKLEQLFARIHSWLS 890 Query: 120 M 120 Sbjct: 891 R 891 >gi|91772837|ref|YP_565529.1| response regulator receiver [Methanococcoides burtonii DSM 6242] gi|91711852|gb|ABE51779.1| Response regulator receiver domain-containing protein [Methanococcoides burtonii DSM 6242] Length = 204 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD ++ + + + A+ EA E K+ P+ +++D M + Sbjct: 7 KILVVDDEPWNLELMEAYLSG-DYEIALASDGVEALEKV-KDFDPDIILLDVRMPKMDGY 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + E I G AGA+ FL KP + L+ + L ++ Sbjct: 65 QTCEKLKNDERTKFIPVVLVTALSEKEDRIKGIAAGADEFLSKPVDMLELKTRVHSLLKI 124 Query: 121 QKSKDENQ 128 ++ D + Sbjct: 125 KQQHDTIR 132 >gi|71909179|ref|YP_286766.1| phosphate regulon transcriptional regulatory protein phoB [Dechloromonas aromatica RCB] gi|71848800|gb|AAZ48296.1| Phosphate regulon transcriptional regulatory protein phoB [Dechloromonas aromatica RCB] Length = 228 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ ++++ GF+V A S EA E + LP+ +++D + G Sbjct: 4 TILVVEDEPAIQELVTINLKHAGFLVVRAGSAEEA-ESAIRAALPDLVILDWMLPGQSGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 +R ++ + L V E + G AGA+ ++ KPF+ + + Sbjct: 63 ALAKKIRADERTRELPIIMLTARVHEEDKVQGLEAGADDYITKPFSPKEM 112 >gi|24375490|ref|NP_719533.1| response regulator [Shewanella oneidensis MR-1] gi|24350350|gb|AAN56977.1|AE015831_1 response regulator [Shewanella oneidensis MR-1] Length = 357 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD S ++ L +D + + ATS +A E +P+ +++D M + F Sbjct: 10 VLVVDDSADNIQILHGLLSDK-YSIRAATSGAKALALAAIEPMPDLILLDVMMPEMDGFQ 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ PL + + ++ + D G GA ++ KP L ++ + Sbjct: 69 TCIRLKHNPLTRHIPIIFVTAKTDIVDERTGFELGAVDYISKPVKPAILEARVKTHLTLA 128 Query: 122 KSKDENQFLDAI 133 ++ + L + Sbjct: 129 SRANQLESLVQL 140 >gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae] gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LLV+ +R+ GF V A E + +E+ + +ID + + + Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGL-YMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R G V L ++ + G + GA+ +L+KPF+ E L + L + Sbjct: 61 ELIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118 >gi|114561672|ref|YP_749185.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332965|gb|ABI70347.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 244 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + K+ + V AT++ +A E + +++D + Sbjct: 14 QHILLVEDEQDLAKLIILNLKALNYSVDHATTLKQAMHIIE-HKKLDLILMDRMLPDGDG 72 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ G +V + L + ++ G AGA+ +L+KPF+ LR ++ L + Sbjct: 73 IMLCEQLRQD--GKEVPLMLLTAKDSEADVVLGLEAGADDYLVKPFSVLELRARVKALLR 130 Query: 120 MQKSKDEN 127 K++ E Sbjct: 131 RGKTQHEQ 138 >gi|295696488|ref|YP_003589726.1| response regulator receiver protein [Bacillus tusciae DSM 2912] gi|295412090|gb|ADG06582.1| response regulator receiver protein [Bacillus tusciae DSM 2912] Length = 168 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +R++ G+ A + A E +E P+ L++D + Sbjct: 5 QKVLVVDDDEELRELVELYLRSHGYRTASAENGRRALELLCRE-QPDLLILDVLLPDVNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +R +DV V +L + ++AG G + +L KPF+ L ++ + Sbjct: 64 VELCRMIR---RSSDVPVLFLSWKGTPGDIVAGLEEGGDDYLTKPFDPMVLVARVKARLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 242 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + GF V S A P+ LV+D + + F Sbjct: 19 KVLVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSP-PDLLVLDVMLPDIDGF 77 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + R G + +L E + G G + ++ KPF L +R + + Sbjct: 78 MLCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRRAG 137 Query: 123 SKD 125 + D Sbjct: 138 AAD 140 >gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++++VD +R++ + G+ V +A + E E +K + + +V+D M + Sbjct: 5 TIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEV-HLIVLDIMMPKIDGI 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR++ + + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREIAE---MPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] Length = 224 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + + G+ V + E E + +++D + G Sbjct: 1 MHHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAI-EKNYDIILLDLMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + + L + G +GA+ +L KPF E L +R + Sbjct: 60 GIEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIF 116 Query: 119 QMQKSKD 125 + ++ ++ Sbjct: 117 RREQKEE 123 >gi|298493108|ref|YP_003723285.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] gi|298235026|gb|ADI66162.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] Length = 338 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 3/115 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + ++ + GF V + S A + + E P+ +++D +M + E Sbjct: 13 ILIVDDNPDNLRLLSKMLESKGFKVKKTVSGEIAIQAAKIEP-PDLILLDINMPDMNGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 ++ ++ + ++ I G ++ KPF + +R Sbjct: 72 VCRQLKSQEKTANIPIIFISALDQTTDKIIAFEIGGGDYITKPFQELEVLARVRN 126 >gi|224536905|ref|ZP_03677444.1| hypothetical protein BACCELL_01781 [Bacteroides cellulosilyticus DSM 14838] gi|224521493|gb|EEF90598.1| hypothetical protein BACCELL_01781 [Bacteroides cellulosilyticus DSM 14838] Length = 472 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + + + + V AT+ EA E + N +V D M + F Sbjct: 228 VLVVEDNPEMLAFIERQLSSQ-YAVITATNGKEALEALDSN-FVNLVVSDVVMPLMDGFE 285 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L + + + I G GA+S++ KPF+ E L + L + Sbjct: 286 LCKTIKSNVGYSHIPIILLTAKTNIQSKIEGMELGADSYIEKPFSPEYLLAVVSNLINNR 345 Query: 122 KSKDEN 127 + + Sbjct: 346 EKLRRD 351 >gi|42523020|ref|NP_968400.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100] gi|39575225|emb|CAE79393.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100] Length = 468 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+VD +R+ + G+ + A +A++ K+ + ++ D M Sbjct: 1 MKSRILVVDDEESIREFLEIMLKKEGYEITLAEDGQKAKDLLAKKT-FDMIISDLQMPHV 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E + HV+ D + E + + GA +L KPF + +R ++ Sbjct: 60 TGIELLKHVK--ESYPDTVFMLITAFGTTETAVEAMKMGAYDYLTKPFKIDEVRLNIQNA 117 Query: 118 PQMQKSKDENQFLD 131 + + + EN+ L Sbjct: 118 LRSRNLEVENRSLK 131 >gi|37528607|ref|NP_931952.1| DNA-binding transcriptional regulator CpxR [Photorhabdus luminescens subsp. laumondii TTO1] gi|36788046|emb|CAE17166.1| Two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 231 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + + + L GF V A +A +F + + L I + + Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALKFLDDSIDLLLLDIMMPRKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R V L + G GA+ +L KPFN L +R + + Sbjct: 61 TTLKELRLH---HQTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQ 128 ++ Q Sbjct: 118 SNWSEQQQ 125 >gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546] gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546] Length = 221 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + V + G+ E ++ ++ P+ +++D + Sbjct: 2 ILIVEDEPSLASVVADYLSHSGYQTHIIGDGAEVIDWV-RQYNPDLILLDLMLPNRDGL- 59 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ +D+ + +VD + G GA+ ++ KP++ L ++ + + Sbjct: 60 DIYRELRSFSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRR 116 >gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2] gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2] Length = 229 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+++ + ++ R + A + E E ++ +++D + + Sbjct: 1 MERILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYR-LVLLDLMLPDMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++ + + + + + MI G GA+ ++ KPFN L ++ Sbjct: 60 GYEICRQIREISE---IPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHI 116 Query: 119 QM 120 Sbjct: 117 AR 118 >gi|307300861|ref|ZP_07580636.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307320002|ref|ZP_07599424.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306894379|gb|EFN25143.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306904395|gb|EFN34980.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 230 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD +++ R G+ V EA + +A + P+ +++D + + Sbjct: 5 RILVVDDEPQIQRFLRPALAAAGYEVIEAANGAQALKAAVTA-APDVVILDLGLPDMDGK 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A++R + V + L + IA GA+ ++ KPF L +R + Sbjct: 64 DVVANIRA---WSQVPIIILSARDRESEKIAALDLGADDYIEKPFGIGELTARIRAALRH 120 Query: 121 Q 121 + Sbjct: 121 R 121 >gi|254796867|ref|YP_003081704.1| Response regulator/GGDEF domain protein PleD [Neorickettsia risticii str. Illinois] gi|254590103|gb|ACT69465.1| Response regulator/GGDEF domain protein PleD [Neorickettsia risticii str. Illinois] Length = 457 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD K+ + V A+S A E + P+ +++D M + F Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGVAAIELARQH-QPDVILLDVMMPEMDGFE 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V + D E + G +GA+ FL+KP TL ++ L + + Sbjct: 64 TCRRLKSDYSTMHIPVIIVTALNDIENKVEGLSSGADDFLVKPAKDFTLFIRIKSLLRFK 123 Query: 122 KSKDENQF 129 DE + Sbjct: 124 TVLDEVRL 131 Score = 48.3 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 6/83 (7%) Query: 47 PNYLVIDESME-GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEK---MIAGARAGANSFLL 102 + L+++ S+ +L + ++ + + + D + + G N ++ Sbjct: 196 FDVLIVNISLSKDLLRLCSAIKSQLKTRSIPIIAI--VDDEDDESLITEITELGINDYIC 253 Query: 103 KPFNRETLRFAMRELPQMQKSKD 125 P N+ + + +K +D Sbjct: 254 VPVNKSEFIARVTTQVKRKKYQD 276 >gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803] gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D M + F Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRNEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTKQTI 132 >gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112] gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112] Length = 237 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A EA +++D M + Sbjct: 9 MK-ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEID 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ +D+ + L + I G GA+ ++ KPFN + ++ L + Sbjct: 68 GM-DVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 126 Query: 121 QKSKDEN 127 + + N Sbjct: 127 SQGEVTN 133 >gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 228 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + G+ + + E + +++D + + Sbjct: 1 MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDEN-FDVILLDLMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + ++G GA+ +++KPF E L +R L + Sbjct: 60 GMEVARRLREK-KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 118 Query: 121 QKSKDENQ 128 + +++ Q Sbjct: 119 IQIENDQQ 126 >gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] Length = 234 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + VF+ + EA E +K + ++D + V Sbjct: 7 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-AIDLAILDIMLPDVSGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L + I G GA+ ++ KPF L ++ + Sbjct: 66 TICQKIREKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 122 Query: 121 QK 122 K Sbjct: 123 YK 124 >gi|188995632|ref|YP_001929884.1| putative DNA-binding response regulator/sensor histidine kinase [Porphyromonas gingivalis ATCC 33277] gi|33411668|dbj|BAC81440.1| regulator of gingipain and black pigmentation [Porphyromonas gingivalis] gi|188595312|dbj|BAG34287.1| putative DNA-binding response regulator/sensor histidine kinase [Porphyromonas gingivalis ATCC 33277] Length = 961 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + + L D + V A + E E +P+ ++ D M + Sbjct: 698 TILLVEDNKDINLLVKLLLCDR-YNVLSAANGKEGIALA-TEHIPDIIITDIMMPIMDGI 755 Query: 63 IAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R Q PL + + L + + + G ++G S+L KPF+ E L + +L + Sbjct: 756 EMTIRMKQSPLLCHIPIVALTAKSTEQDRLEGIKSGVVSYLCKPFSPEELLMRIEQLLKD 815 Query: 121 QKSKDE 126 ++ + Sbjct: 816 RELLKK 821 >gi|330983029|gb|EGH81132.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 124 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + G+ V A E + +V+D + G+ Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ D V L + + G R+GA+ +LLKPF L + + + Sbjct: 61 TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119 Query: 121 QK 122 + Sbjct: 120 AQ 121 >gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M SLLL++ +R + G V A + + +E P+ +V+D + G+ Sbjct: 1 MPSLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKL-REERPDLIVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKDEN 127 + + + + Sbjct: 117 RRGERESSD 125 >gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 227 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+++ + + G+ V + E E E + +++D + G +E Sbjct: 6 VLIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAII-EGDFDLVLLDIMLPGLSGME 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR+ + + L + D + G GA+ ++ KPF E L MR + + Sbjct: 65 ICRRVRKESE---IPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRRN 121 Query: 122 K 122 K Sbjct: 122 K 122 >gi|300868652|ref|ZP_07113264.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300333346|emb|CBN58456.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 484 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD ++ + D G+ + A +A + + + +++D M G E Sbjct: 13 ILVVDDIPENLRLLAGILADRGYRIRPARDGFQALSIA-QNIPIDLILLDIMMPGISGYE 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + D+ V ++ + + G ++ KPF E + + QM+ Sbjct: 72 VCQKLKADEVTRDIPVIFISAINEVLDKVKAFAVGGVDYITKPFQAEEVLARVETQCQMR 131 Query: 122 KSKDENQF 129 + Q Sbjct: 132 FLQKHLQQ 139 >gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 237 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + +V + G+ +A EA + + + ++ID M + Sbjct: 4 QTILIVDDDREIVRVIAKILELEGYRTLKAYDGLEALDMLVGN-VVHLIMIDIMMPKMNG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ + L + + + G GA+ ++ KPFN + + ++ + Sbjct: 63 LAAVMKIRE-TNNIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRR 120 >gi|238756867|ref|ZP_04618055.1| Response regulator receiver modulated diguanylate cyclase [Yersinia aldovae ATCC 35236] gi|238704697|gb|EEP97226.1| Response regulator receiver modulated diguanylate cyclase [Yersinia aldovae ATCC 35236] Length = 309 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD I +V F+ V ATS +A + C + P+ +++D M + F Sbjct: 9 KILIVDDHPINIQVLYQAFS-ADHNVCMATSGKQALDVCHSQ-QPDLILLDIEMPDMNGF 66 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ +D+ V ++ +D E AGA F+ KP NR T+R ++ + Sbjct: 67 EVCAKLKACTETSDIPVIFVTAHIDEETETRCFSAGAVDFISKPINRNTVRARVKTHLLL 126 Query: 121 QKSKDENQFL 130 + D + L Sbjct: 127 KAQSDLLRQL 136 >gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 307 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LLVD S GF V ATS A E+ + P+ +++D M + F Sbjct: 11 VLLVDDSPEALGFLTDALEQSGFSVLIATSGSAALNIVER-ITPDLILLDAVMPSMDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V ++ + E ++ +G +L KP N + LR +R + Sbjct: 70 TCRRLKANVGVAQIPVIFMTGLTETEHVVHALESGGVDYLSKPINVDELRARIRVHLRNA 129 Query: 122 KSKDENQF-LDA 132 +S + LDA Sbjct: 130 RSAQSARVALDA 141 >gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 958 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + + GF V A + EA E KE + +++D M + Sbjct: 697 KEILVVEDNKANQVLIKKMLEKVGFKVDVAGNGKEALEKI-KEKTYSLIIMDMQMPVMDG 755 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + A + G V V L AG + +L KP ++ L A+ ++Q Sbjct: 756 YTATRKIREKGLKVPVIALTAHTLRGDEAKSLEAGCDGYLGKPVKQKELIDAIVYFLRIQ 815 Query: 122 KSKDENQF 129 + + +F Sbjct: 816 EELETTRF 823 >gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D +R++ + G+ VF A EA E + V+D M Sbjct: 1 MIHILIADDDAHIRELLLYHLQTEGYTVFTAADGEEA-SALLAEEQVHLAVVDVMMPNKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R DV V L + G G + +L KPF L F ++ L Sbjct: 60 GYQLCEEIR---RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALL 116 Query: 119 QMQKSKDENQ 128 + + ++ Sbjct: 117 RRYQMVSADK 126 >gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704] gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704] Length = 229 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + V + + V++ + EA + C + + ++D + + F Sbjct: 2 NILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALD-CIGGMKIDLAILDIMLPDIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++Q+ V L + ++ I G GA+ ++ KPFN L ++ + Sbjct: 61 -QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119 Query: 123 SKDE 126 +E Sbjct: 120 QYNE 123 >gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus] gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus] gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 231 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD + ++ + GF V A + EKE + + V+D + + F Sbjct: 4 KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETV-DVAVLDVMLPDIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++Q+ V L + + I G GA+ ++ KPFN + ++ + + Sbjct: 63 -QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQ 121 Query: 123 SKDE 126 ++ Sbjct: 122 RYNQ 125 >gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] Length = 226 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ R+ F + GF V A E + + +V+D + G+ Sbjct: 3 RRVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHA-TDGGFDAMVLDRMLPGLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G + V L ++ + G RAGA+ +L+KPF+ + L + L + Sbjct: 62 LALIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRP 121 Query: 122 KSKDENQFLD 131 + E L Sbjct: 122 QDTQEATVLA 131 >gi|87125700|ref|ZP_01081544.1| two-component response regulator [Synechococcus sp. RS9917] gi|86166676|gb|EAQ67939.1| two-component response regulator [Synechococcus sp. RS9917] Length = 246 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 4/124 (3%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M + +VD +R++ D G+ V + V + + + P+ +V+D M Sbjct: 6 MTRTTMIWVVDDDPELRQMVGTYLIDQGYEVRCLSDVKQFEARLDFQ-RPDLVVLDLMMP 64 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 G A R D+ V L + D I G GA+ +L KPF L + + Sbjct: 65 GDDGLTALRRLRDADDDLPVVMLTAKGDGIDRIIGLEQGADDYLAKPFLPRELSARIEAV 124 Query: 118 PQMQ 121 + + Sbjct: 125 LRRR 128 >gi|330721354|gb|EGG99427.1| Two component Transcriptional regulator2C Winged helix family [gamma proteobacterium IMCC2047] Length = 233 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 7/128 (5%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + L+VD ++R+ F +G A + EA + L +D M G Sbjct: 1 MKKVRYLIVDDDEVIRESLAAYFEKYGIECDLAANAEEA-RHFLSNGQYDLLTVDVVMPG 59 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +E ++ + V L D +AG GA+ ++ KPF+ L + Sbjct: 60 ESGIELTKWIKA--EFAHMPVILLTALDDAIDTVAGLEVGADDYVSKPFDFRVLLARAKA 117 Query: 117 LPQMQKSK 124 + + +++ Sbjct: 118 VLRRYEAE 125 >gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 233 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + ++ G+ V + RE + P+ +++D + G+ Sbjct: 1 MPNILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDP-PDLVILDLMLPGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + L D + G GA+ ++ KP L +R L Sbjct: 60 GLQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 117 Query: 119 QMQKSKDEN 127 + + Sbjct: 118 RRSSLTEPQ 126 >gi|239908802|ref|YP_002955544.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239798669|dbj|BAH77658.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 384 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 4/127 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD I + V A A + E P+ +++D M G+ Sbjct: 1 MGKVLIVDDERINIHILSAAL-KNDHSVIIAIDGTTAIDLALSE-RPDLILLDIMMPGMD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ P D+ + ++ D + G GA ++ KPFN ++ ++ Sbjct: 59 GYEACSKLKASPATRDIPIIFITALSDAKSESHGLECGAIDYITKPFNVALVKSRVKNHV 118 Query: 119 QMQKSKD 125 +++ ++D Sbjct: 119 ELKIARD 125 >gi|239907737|ref|YP_002954478.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239797603|dbj|BAH76592.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 305 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + V + V A+S +A E E P+ +++D M + Sbjct: 9 TILIVDDAPSNLAVLTEALRSE-YEVRIASSGSQALRLVE-ESAPDLILLDILMPDMDGY 66 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + +L + D G GA +++KP + ++ +R ++ Sbjct: 67 EVCRRFKARAATRNIPIIFLTAKGDVADETLGLALGAVDYIVKPVSVPIVQARVRTHVEL 126 Query: 121 QKSKDENQFLD 131 ++ D + L Sbjct: 127 KRRGDLLETLS 137 >gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676] gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676] Length = 243 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 15 NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 73 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 74 IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 130 Query: 120 MQKSKDEN 127 ++N Sbjct: 131 RYTYFNQN 138 >gi|172035362|ref|YP_001801863.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171696816|gb|ACB49797.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 121 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++LLV+ S +++ + G+ V A +A E KE P+ +V+D M + Sbjct: 1 MRAVLLVEDSPAQQRMIATILKKNGWQVIIAEDGIQALETI-KEASPDLIVLDIVMPKMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V + + + G + GA++++ KPF L +++L Sbjct: 60 GYEVCRRIKTNPSTQNVPIVMCSSKGEEFDRYWGIKQGADAYIAKPFEDIELIGTIQQLL 119 Query: 119 QM 120 + Sbjct: 120 RQ 121 >gi|157151302|ref|YP_001449801.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157076096|gb|ABV10779.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 228 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + +V G+ V + EA + N +++D M + Sbjct: 2 RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTY-NVIILDIMMPIMTGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A G V L + + + G AGA+ +L KPF+ + L +R + + Sbjct: 61 EALKEIRATGNTTHVIMLTAMAEVDDRVNGLDAGADDYLTKPFSLKELLARLRSMARRAD 120 Query: 123 SKDENQF 129 + Q Sbjct: 121 NYSPVQL 127 >gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 1198 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ D V AT EA + + + + +++D M + Sbjct: 1076 KTVLIADDDVRNIFSLTKALEQHKMKVLAATDGKEALQILKDNPMVDVVLMDMMMPEMDG 1135 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++ + + + + AGA+ ++ KP + + L +R Sbjct: 1136 YESTREIRKISAYKHLPILAVTAKAMMGDREKCIAAGASDYISKPVDVDQLISLLRVWL 1194 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 9/125 (7%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ K + + A E P +++D + Sbjct: 806 KVILIIEDDTNFAKTLLNFTRKRDYKGIVAVRGDVGIELA-NHYKPLAILLDIQLPVKDG 864 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF---AMRE 116 + ++ P+ + V+ + E GA F+ KP E ++ + + Sbjct: 865 WQVMEELKSNPVTKPIPVHIMSSL---EMRKKSLLRGAVDFINKPVALEQMKQIFTKLED 921 Query: 117 LPQMQ 121 Sbjct: 922 ALSRH 926 Score = 53.3 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 11/107 (10%), Positives = 42/107 (39%), Gaps = 9/107 (8%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + + + +++ A +V ++ K+ + + +++D + Sbjct: 928 KKVLIVEENKQHAEALSYFLSNYNIQTEIAGNVGDSIGALHKKEV-DCVILDMGIPDKNA 986 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEV---DFEKMIAGARAGANSFLLK 103 + + +++ ++ + + E I A+S ++K Sbjct: 987 YDTLETIKKSEGLENLPIIIFTGKNLSKGEETRIRQY---ADSIVVK 1030 >gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3] gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A] gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3] gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A] Length = 229 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ A EA +++D M + Sbjct: 1 MK-ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ +D+ + L + I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-DVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDEN 127 + + N Sbjct: 119 SQGEVTN 125 >gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 233 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + ++ R F V S + +E + +++D + + Sbjct: 6 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMNG 64 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 65 FEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 121 Query: 120 MQKSKDEN 127 + N Sbjct: 122 RYERLSGN 129 >gi|218889743|ref|YP_002438607.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58] gi|218769966|emb|CAW25728.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58] Length = 795 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + I + V R + G+ V A + EA E +E P+ +++D M + F Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 727 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +P ++ V L AG + ++ KP E L+ + + Sbjct: 728 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785 >gi|163756770|ref|ZP_02163880.1| transcriptional regulator [Kordia algicida OT-1] gi|161323287|gb|EDP94626.1| transcriptional regulator [Kordia algicida OT-1] Length = 348 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL++ I+R+ L + V A + E ++ P+ +V D M Sbjct: 1 MKKVLLIEDDTILRENTAELLELADYDVVTAPNGKVGVETALQDS-PDIIVCDIMMPALD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + + +L + + + + G GA+ ++ KPF E L A+ Sbjct: 60 GYGVLEALSKNDATKYIPFIFLSAKTERQDIRKGMDLGADDYITKPFEEEELISAIESRI 119 Query: 119 QMQKSKDENQ 128 + + Sbjct: 120 AKAAILKDER 129 >gi|152973317|ref|YP_001338463.1| DNA-binding response regulator CreB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892984|ref|YP_002917718.1| DNA-binding response regulator CreB [Klebsiella pneumoniae NTUH-K2044] gi|150958166|gb|ABR80196.1| catabolic regulation response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545300|dbj|BAH61651.1| catabolic regulation response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 229 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 + LV+ + ++ GF V A E P+ ++D + + F Sbjct: 5 RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAA-AHQAPDVAILDVGLPDISGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + V +L D + G GA+ ++ KPF+ + +R + + Sbjct: 64 ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121 >gi|15800395|ref|NP_286407.1| DNA-binding transcriptional activator KdpE [Escherichia coli O157:H7 EDL933] gi|15829976|ref|NP_308749.1| DNA-binding transcriptional activator KdpE [Escherichia coli O157:H7 str. Sakai] gi|168750624|ref|ZP_02775646.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4113] gi|168757145|ref|ZP_02782152.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4401] gi|168764936|ref|ZP_02789943.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4501] gi|168767133|ref|ZP_02792140.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4486] gi|168777018|ref|ZP_02802025.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4196] gi|168779177|ref|ZP_02804184.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4076] gi|168786846|ref|ZP_02811853.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC869] gi|168802543|ref|ZP_02827550.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC508] gi|195939038|ref|ZP_03084420.1| DNA-binding transcriptional activator KdpE [Escherichia coli O157:H7 str. EC4024] gi|208807283|ref|ZP_03249620.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4206] gi|208816300|ref|ZP_03257479.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4045] gi|208823237|ref|ZP_03263555.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4042] gi|209398256|ref|YP_002269320.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4115] gi|217324143|ref|ZP_03440227.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. TW14588] gi|254791844|ref|YP_003076681.1| DNA-binding transcriptional activator KdpE [Escherichia coli O157:H7 str. TW14359] gi|261224150|ref|ZP_05938431.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli O157:H7 str. FRIK2000] gi|261257844|ref|ZP_05950377.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli O157:H7 str. FRIK966] gi|291281629|ref|YP_003498447.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O55:H7 str. CB9615] gi|331651698|ref|ZP_08352717.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli M718] gi|12513597|gb|AAG55015.1|AE005247_6 regulator of kdp operon (transcriptional effector) [Escherichia coli O157:H7 str. EDL933] gi|13360180|dbj|BAB34145.1| transcriptional regulator of kdp operon [Escherichia coli O157:H7 str. Sakai] gi|187767648|gb|EDU31492.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4196] gi|188015200|gb|EDU53322.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4113] gi|189003036|gb|EDU72022.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4076] gi|189355800|gb|EDU74219.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4401] gi|189363566|gb|EDU81985.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4486] gi|189365151|gb|EDU83567.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4501] gi|189373100|gb|EDU91516.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC869] gi|189375482|gb|EDU93898.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC508] gi|208727084|gb|EDZ76685.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4206] gi|208732948|gb|EDZ81636.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4045] gi|208737430|gb|EDZ85114.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4042] gi|209159656|gb|ACI37089.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. EC4115] gi|209776678|gb|ACI86651.1| transcriptional regulator of kdp operon [Escherichia coli] gi|209776680|gb|ACI86652.1| transcriptional regulator of kdp operon [Escherichia coli] gi|209776682|gb|ACI86653.1| transcriptional regulator of kdp operon [Escherichia coli] gi|209776684|gb|ACI86654.1| transcriptional regulator of kdp operon [Escherichia coli] gi|209776686|gb|ACI86655.1| transcriptional regulator of kdp operon [Escherichia coli] gi|217320364|gb|EEC28788.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O157:H7 str. TW14588] gi|254591244|gb|ACT70605.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli O157:H7 str. TW14359] gi|290761502|gb|ADD55463.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli O55:H7 str. CB9615] gi|320193092|gb|EFW67732.1| DNA-binding response regulator KdpE [Escherichia coli O157:H7 str. EC1212] gi|320638130|gb|EFX07894.1| DNA-binding transcriptional activator KdpE [Escherichia coli O157:H7 str. G5101] gi|320643534|gb|EFX12704.1| DNA-binding transcriptional activator KdpE [Escherichia coli O157:H- str. 493-89] gi|320648869|gb|EFX17496.1| DNA-binding transcriptional activator KdpE [Escherichia coli O157:H- str. H 2687] gi|320654453|gb|EFX22500.1| DNA-binding transcriptional activator KdpE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660027|gb|EFX27561.1| DNA-binding transcriptional activator KdpE [Escherichia coli O55:H7 str. USDA 5905] gi|320664933|gb|EFX32068.1| DNA-binding transcriptional activator KdpE [Escherichia coli O157:H7 str. LSU-61] gi|326341436|gb|EGD65228.1| DNA-binding response regulator KdpE [Escherichia coli O157:H7 str. 1044] gi|326345783|gb|EGD69522.1| DNA-binding response regulator KdpE [Escherichia coli O157:H7 str. 1125] gi|331049976|gb|EGI22034.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli M718] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|25010196|ref|NP_734591.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76786780|ref|YP_328847.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77409199|ref|ZP_00785910.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77414552|ref|ZP_00790696.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|23094547|emb|CAD45766.1| Unknown [Streptococcus agalactiae NEM316] gi|76561837|gb|ABA44421.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77159393|gb|EAO70560.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77172207|gb|EAO75365.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 223 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + +K+ G+ A++ EA + E + ++ D M + Sbjct: 1 MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEV-QLIITDIMMPMMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R +V + + + E M G GA+ +++KP + L ++ L Sbjct: 60 GYQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALL 117 Query: 119 QMQKSKDENQFL 130 + ++Q + Sbjct: 118 RRANIVAQHQLI 129 >gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon 107 str. F0167] Length = 231 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+ D + + + GF V A EA + K + + L+ID M + Sbjct: 1 MELILVCDDDREIVDAIKIYLSGEGFEVLTAYDGEEAIKLMAKNRV-DLLIIDIMMPVLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++ + V + L + + I G GA+ +L KPFN L ++ + Sbjct: 60 G-IRATMKIRENSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRR 118 Query: 121 QK 122 K Sbjct: 119 YK 120 >gi|319900883|ref|YP_004160611.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415914|gb|ADV43025.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 1357 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + + + F V A EA EL+P+ +V D M + Sbjct: 1106 VLVVDDNGDFIDFMKDSLSLY-FSVQSAPDGAEAW-KVIPELMPDLIVSDLMMPEMDGNE 1163 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 VR ++ L + E + G GA+ ++ KPFN E L MR+L + Sbjct: 1164 LCRRVRADKRTANIPFVLLTAKQSVENKVEGLTIGADDYVTKPFNVEVLILRMRKLIDLS 1223 Query: 122 KSKDENQFLD 131 +D Sbjct: 1224 GRSKLRTRID 1233 >gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 233 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ + ++ G+ V + RE P+ +++D + G+ Sbjct: 1 MPNILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNP-PDLVILDLMLPGLD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G + + L D + G GA+ ++ KP L +R L Sbjct: 60 GLQVCRLLRDDSAG--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 117 Query: 119 QMQKSKDEN 127 + + Sbjct: 118 RRSSLSEPQ 126 >gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 250 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ + ++ R G V A + P+ +V+D M L Sbjct: 4 RILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRART-TRPDLIVLDVMMPQVDGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + V + L E M+ G GA+ ++ KP++ L +R L + Sbjct: 63 DVCRILRTD---SQVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRR 119 Query: 121 QKS 123 ++ Sbjct: 120 SRA 122 >gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759] gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759] Length = 229 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ R F V + E E + +++D + + Sbjct: 1 MSKILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEY-SLILLDLMLPDMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ + + + + I G G + ++ KPF+ L ++ Sbjct: 60 GFEICRQIREK---KDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Sinorhizobium meliloti 1021] gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 223 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G++V +A E + + +++D + + Sbjct: 2 RILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEG-HYLGDAEPYDAVILDIGLPEMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRR 118 >gi|187730233|ref|YP_001879307.1| DNA-binding transcriptional activator KdpE [Shigella boydii CDC 3083-94] gi|187427225|gb|ACD06499.1| KDP operon transcriptional regulatory protein KdpE [Shigella boydii CDC 3083-94] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|332521696|ref|ZP_08398149.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332042785|gb|EGI78985.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 235 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LL D + F VF A EA + + + +ID M + Sbjct: 4 KSILLADDDIDFGTTLKQYLELNKFEVFWAKDGAEALDLFKMHT-FDICIIDVMMPKLDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + +L E I G GA+ ++ KPF E L + + + Sbjct: 63 FKLSKKISKKNAETPFLFLTARKTKEDRIKGLSLGADDYITKPFEVEELILRINNIIKRT 122 Query: 122 KSKD 125 K Sbjct: 123 KQHK 126 >gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] Length = 1214 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D + G V A + E E E+ +++D M + Sbjct: 1074 KILIIDDDIRNVFALTSVLERHGATVVYAENGREGIEQLERNEDVALVLMDIMMPEMDGW 1133 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+MP D+ + L +V +GA+ ++ KP + + L +R Sbjct: 1134 ATTSAIRKMPQFADLPIIALTAKVMHGDREKSIASGASDYVPKPVDVDLLLDRLRGWLAQ 1193 Query: 121 QKSKD 125 +S+ Sbjct: 1194 SRSER 1198 >gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 268 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A +EL P+ +V+D + + Sbjct: 44 RVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGAL-RAARELRPDAVVLDMMLPDMDGL 102 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E+ +AG AG + ++ KPF E + +R L + Sbjct: 103 SVLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSG 162 Query: 123 SKDE 126 + D Sbjct: 163 AADR 166 >gi|170767948|ref|ZP_02902401.1| KDP operon transcriptional regulatory protein KdpE [Escherichia albertii TW07627] gi|170123436|gb|EDS92367.1| KDP operon transcriptional regulatory protein KdpE [Escherichia albertii TW07627] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V + L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPIIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 Q 121 Sbjct: 119 H 119 >gi|148239785|ref|YP_001225172.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147848324|emb|CAK23875.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 241 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 + +VD +R++ D G+ V + V + E + P+ +V+D M G Sbjct: 7 IWVVDDDPELRQMVGTYLIDQGYDVRSLSDVKQ-LEARLEFQRPDLIVLDLMMPGDDGLT 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A R G D+ V L + I G GA+ +L KPF L + + + + S Sbjct: 66 ALRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRSS 125 >gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + G+ V A + + L++D + + Sbjct: 2 RILLVDDEVELTLPLSRALTREGYAVDVADEGATGYNLATQHHY-DLLILDWMLPHQSGV 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + + +L + + G AGA+ +L+KPF L +R L + Sbjct: 61 EMCQQLRL--KNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB family [Candidatus Kuenenia stuttgartiensis] Length = 224 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + K + + + V A + + E + +V+D + G+ Sbjct: 1 MK-ILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENY-DLIVVDIMLPGIN 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R G +L + G GA+ +++KPF+ L +R Sbjct: 59 GKEVLKQIRN--TGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACM 116 Query: 119 QMQ 121 + + Sbjct: 117 RRR 119 >gi|82543127|ref|YP_407074.1| DNA-binding transcriptional activator KdpE [Shigella boydii Sb227] gi|81244538|gb|ABB65246.1| regulator of kdp operon [Shigella boydii Sb227] gi|320184398|gb|EFW59208.1| DNA-binding response regulator KdpE [Shigella flexneri CDC 796-83] gi|332097765|gb|EGJ02739.1| KDP operon transcriptional regulatory protein kdpE [Shigella boydii 3594-74] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|71906060|ref|YP_283647.1| PAS [Dechloromonas aromatica RCB] gi|71845681|gb|AAZ45177.1| PAS protein [Dechloromonas aromatica RCB] Length = 787 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 3/115 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LL + S + R+V + D +V + A E +E + +++D M + Sbjct: 661 RSVLLAEDSWVNREVVVEMLEDQLLVVDVVENGVAAVERV-RERDYDLVLMDVQMPEMDG 719 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +R MP + + L E A AG N +L KPF+ + L + Sbjct: 720 LEATRRIRAMPQRERLPIIALTANAFAEDRQACLEAGMNDYLAKPFSPDKLFARV 774 >gi|254229630|ref|ZP_04923041.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262393833|ref|YP_003285687.1| DNA-binding response regulator [Vibrio sp. Ex25] gi|151937829|gb|EDN56676.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262337427|gb|ACY51222.1| DNA-binding response regulator [Vibrio sp. Ex25] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + F G + A + + + +++D + + Sbjct: 1 MKRVLLVEDNREIAGMLFDYFECAGMQLDYADNGELGLKLAMDN-AFDIILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + ++ G + GA+ +L KPF+ + L M L + Sbjct: 60 GLTLCNKLRDAGNNTPVLMLTALDSRDDVLKGFQHGADDYLTKPFDLDILEARMTALIKR 119 Query: 121 QK 122 + Sbjct: 120 YR 121 >gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 4 NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 63 IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 119 Query: 120 MQKSKDEN 127 ++N Sbjct: 120 RYTYFNQN 127 >gi|323496265|ref|ZP_08101323.1| chemotaxis protein CheY [Vibrio sinaloensis DSM 21326] gi|323318542|gb|EGA71495.1| chemotaxis protein CheY [Vibrio sinaloensis DSM 21326] Length = 119 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L VD S +R++ H D G+ V A +A + ++ D +M + Sbjct: 1 MTKILAVDDSVSIRQMVSHTLRDAGYDVETANDGRDALSKI-TGTKFDVVISDVNMPNMG 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R+ P V + L E +K + G AGA +L+KPFN ETL ++ + Sbjct: 60 GFELVKALREKPQYKFVPILMLTTETSADKKMQGKSAGATGWLVKPFNPETLLKTLKRVV 119 >gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 230 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ R + V + +E +++D + Sbjct: 1 MKRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQED-FALILLDVMLPKED 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + +V + + + + I G GAN +++KPFN L ++ Sbjct: 60 GF-QVCRNLRASKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIAN 118 Query: 121 QKSKDE 126 + + Sbjct: 119 YERLTQ 124 >gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + +++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|315501605|ref|YP_004080492.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|315408224|gb|ADU06341.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 226 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R G+ V A S P+ +V+D + + Sbjct: 1 MTRILVVDDEPQILRALRINLRARGYDVEVADSGAA-ALKAAAGHPPDLVVLDLGLPDLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + T V + L E +A AGA+ ++ KPF + L +R + + Sbjct: 60 G-TDVIRGLRGWTAVPIIVLSGRAGSEDKVAALDAGADDYVTKPFGVDELLARIRAVTRR 118 >gi|256393258|ref|YP_003114822.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256359484|gb|ACU72981.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1588 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L++D + G V +A + + + + +++D M + Sbjct: 1468 RSVLVIDDDARNLFALTGMLEMHGMRVVDAEDGVKGIQALQNDPRIEVILMDVMMPEMDG 1527 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R MP D+ + + + AGAN ++ KP + L +++ + Sbjct: 1528 YEATARIRTMPEHADLPIIAVTAKAMNGDREKSLAAGANDYVTKPVDAAVLIESIQRVL 1586 >gi|225872108|ref|YP_002753563.1| two-component osmotic transcriptional regulator kdpE, winged helix family [Acidobacterium capsulatum ATCC 51196] gi|225794265|gb|ACO34355.1| two-component osmotic transcriptional regulator kdpE, winged helix family [Acidobacterium capsulatum ATCC 51196] Length = 231 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + +V R + +F A++ EA + E+ P ++ D +M + Sbjct: 2 RILVVDDEPQIVRVLRAALQSNDYEIFTASNGAEALQVYL-EVNPALVITDLAMPEMDGV 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ V + + + I GA+ ++ KPF + L +R + Sbjct: 61 ALTREIRQRAS---TPVIVVSVRNQEREKIRALDEGADDYITKPFAIQELLARVRVQLRR 117 Query: 121 QKSKD 125 ++ Sbjct: 118 ASERE 122 >gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G++V A E + E +++D + G+ F Sbjct: 2 RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEG-RYLATEGDYALILLDVMLPGIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A ++ + ++V V L E + G + GA+ +L+KPF+ L ++ L + K Sbjct: 61 -AVLQAIRRTSNVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRRGK 119 Query: 123 SKD 125 ++ Sbjct: 120 PQE 122 >gi|153873243|ref|ZP_02001890.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152070291|gb|EDN68110.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 716 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ V A + +A + E++ +++D M + Sbjct: 596 KKVLIVDDDSRNVFALATVLENYDMEVIFADNGKKALKLLEEQDNIAIVLMDIMMPEMDG 655 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R + + L + AGAN +L KP + + L MR Sbjct: 656 YEAMRKIRAQARFRQLPIIALTAKAMKGDKAKCIEAGANDYLAKPVDTDKLISLMRVWLY 715 Query: 120 M 120 Sbjct: 716 R 716 Score = 86.4 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 6/118 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ ++ L + F A + + E + P+ +++D + V Sbjct: 328 KVLLIIEDERKFSRLLMDLAQENAFKCLVAEDGETSLQLAE-QYKPHAIILDVGLPQVDG 386 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++ + VY++ + + GA +LLKP L A + + Sbjct: 387 WTVMERLKDNQDTRHIPVYFISASDQ---VQEAKKMGAIGYLLKPVGMAELEEAFQNI 441 Score = 39.4 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 4/116 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L++ + L + ++ A C + + +++D +E Sbjct: 450 KNVLVITDEKQYHQKIFDLLRSEEIQITPTITMAIAL-RCLHKTRFDCIILDVDIEQGTG 508 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET-LRFAM 114 F+ + + + + A A + L+K L + Sbjct: 509 INFLEQMEKRESLHQIPLIVYTERDLTTTEEALLLQCAENLLIKSVRTAERLLDEV 564 >gi|254242660|ref|ZP_04935982.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192] gi|126196038|gb|EAZ60101.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192] Length = 795 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + I + V R + G+ V A + EA E +E P+ +++D M + F Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 727 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +P ++ V L AG + ++ KP E L+ + + Sbjct: 728 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785 >gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1323 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + I R+V L N+ G ++ A + EA E + + +++D M + Sbjct: 964 RVLLVEDNAINREVVLELLNNSGLVIETAVNGQEALERV-SQHAFDLILMDIQMPLMDGY 1022 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +P V + L E A AG N F+ KP L A+++ Sbjct: 1023 SATRAIRALPGWEQVPILALTASAFEEDRKACESAGMNDFIAKPVTPAKLFEALQQWL 1080 >gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] Length = 228 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 8/134 (5%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +L+V+ ++++ + + V A+ E K+ + +++D M Sbjct: 8 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQS-FDLILLDVMMPN 66 Query: 59 VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F +R ++V + L + E + G G + ++ KPF+ L + Sbjct: 67 LNGFEVSKMIRSQ---SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEA 123 Query: 117 LPQMQKSKDENQFL 130 + + K+ N L Sbjct: 124 VLRRSYDKNVNNHL 137 >gi|163846005|ref|YP_001634049.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222523730|ref|YP_002568200.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667294|gb|ABY33660.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222447609|gb|ACM51875.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 493 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD ++R + + F + A +A + ++ LP+ +++D + + Sbjct: 4 NTILIVDDDELMRSLLIEIITPFNLRLITAQRGDQALQLAQQH-LPDLILLDVMLPDMNG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F +R P + + + D E I G AGA+ F+ KPF+ L+ + + Sbjct: 63 FEVCQRLRDDPATAQIPIVMITALNDREAKIHGFEAGADEFITKPFDPGELQARINTV 120 >gi|332969535|gb|EGK08554.1| transcriptional regulatory protein OmpR [Desmospora sp. 8437] Length = 245 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +++L+VD + ++ R + F V A +A E+ + ++ D M Sbjct: 21 NTVLVVDDDQSIVELLRDFLENENFRVITACDSAQAWAVFEQSTIHCLIL-DIMMPEQNG 79 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R ++V + +L D I G G + +++K + + ++ + + Sbjct: 80 FELCRRIRAK---SNVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 136 Query: 120 MQKSKDENQ 128 S+ + + Sbjct: 137 RSASQQQME 145 >gi|310643960|ref|YP_003948718.1| sensor protein [Paenibacillus polymyxa SC2] gi|309248910|gb|ADO58477.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 1238 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + V A + EA E E+ + +++D M + Sbjct: 1118 KKILLVDDDIRNVFALSSVLESYRMEVTFAENGREALEMLEQTPDFDLVLMDMMMPEMDG 1177 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R MP + + L + + AGA+ ++ KP E L MR Sbjct: 1178 YEAMRRIRLMPQFEKLPIIALTAKAMKDDRSKCIEAGASDYVKKPIQTEQLLSLMRVWL 1236 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 6/111 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ + + + GF A + LP+ +++D + + Sbjct: 850 KVLLIIEDDINFANILYDMAHSRGFKALIALKGDDGLNMA-HSYLPDAIILDIQLPVMDG 908 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + ++ + V+ + + + + G GA ++L KP ++E+L Sbjct: 909 WSILGELKGNSSTRHIPVHVISV---IDDVKQGLMMGAIAYLKKPSSKESL 956 Score = 73.7 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ RK L + + ++ EA + + +V+D + + Sbjct: 972 KRLLVVEDDDNQRKSIIELIDHDDVAITAVSTGKEALNELATQRY-DCMVLDLMLSDMTG 1030 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + +R+ TD+ + + K R A S ++K + E L Sbjct: 1031 FELLDRIRENEQLTDLPIIIYTGKDLDSKEETQLRKYAESIIIKDVKSPERLLD 1084 >gi|307545687|ref|YP_003898166.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307217711|emb|CBV42981.1| two component transcriptional regulator, winged helix family [Halomonas elongata DSM 2581] Length = 241 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++VD +R + G+ A EA P+ LV+D + G F Sbjct: 7 TLVVVDDDPEIRDLLADYLTRHGYRALMAED-AEALRALLATERPDLLVVDLMLPGDDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ V + L D I G GA+ +L KPFN L ++ + + Sbjct: 66 AICREVRRDSE---VPIIMLTASPDETDRILGLELGADDYLGKPFNPRELLARVKAVLRR 122 Query: 121 QKSK 124 + + Sbjct: 123 CRPR 126 >gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 1/122 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + G+ E E C E + +++D ++ GV Sbjct: 3 ILIIEDEKQLCQSIAEGLRMDGYEADTCFDGDEGLELCLVENY-DLILLDLNLPGVDGLE 61 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + T V L + + G GAN +L KPF+ E L +R L + + Sbjct: 62 ILRQFRESDTSTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFI 121 Query: 124 KD 125 + Sbjct: 122 QQ 123 >gi|323343098|ref|ZP_08083329.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463162|gb|EFY08357.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 231 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R + + G+ V A+ +A ++ + +++D M + Sbjct: 1 MKKILIVDDDKEIRDLMKRYLEIDGYEVVVASDGHDAMRALDESIK--LVILDVMMPEIT 58 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +V + ++ + + G G + +L KPF+ L ++ L Sbjct: 59 GFEVSEAIRKH---YNVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLL 115 Query: 119 QM 120 + Sbjct: 116 RR 117 >gi|256421717|ref|YP_003122370.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] gi|256036625|gb|ACU60169.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1013 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + + + + + V A++ EA +E P +V D M + F Sbjct: 607 ILVVDDNSQMANYIQKMLSRH-WKVITASNGREALSLIYQE-APALVVSDVMMPDMNGFE 664 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ +++ V L E I G GAN +++KPF + L + Q++ Sbjct: 665 LLNAIKSDVEISNIPVILLSARAGKEATIEGLEKGANDYIIKPFYADELIARVSTQLQLR 724 Query: 122 KSKDENQFLDA 132 K++ N L Sbjct: 725 KAELANTHLRE 735 >gi|239906625|ref|YP_002953366.1| putative NtrC family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239796491|dbj|BAH75480.1| putative NtrC family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 460 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + +V G+ V A + EA E ++ + ++ D M G+ Sbjct: 10 KTILVVDDDPHILEVLEVRLVSAGYDVVPAANGLEALEVLSRQPVR-LVISDMRMPGMDG 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G + + +L + + GA +L KPF+ + L + ++ Sbjct: 69 MRMLEEMERRGIKLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLARVTDVFAKA 128 Query: 122 KSKDENQFLDA 132 D + + A Sbjct: 129 AGLDAAKTIKA 139 >gi|255036502|ref|YP_003087123.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254949258|gb|ACT93958.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 228 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 5/121 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ + + F A ++ E + +++D ++ G+ Sbjct: 1 MKKILIVEDDRRIAQNIFRGLAAENFEAEIAYDGITGKQMAL-EKKFDLVLLDVNLPGMK 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R + + L + E + G +GA+ +++KPF+ L + Sbjct: 60 GYDVCQQLRVYK--PSLPIIMLTAFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAAL 117 Query: 119 Q 119 + Sbjct: 118 R 118 >gi|254411375|ref|ZP_05025152.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181876|gb|EDX76863.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 779 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 10/138 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+D K + G+ V A S + + E +L P+ +++D M + F Sbjct: 15 KILLIDDRVENLKPISDCLQNTGYEVRIAKSGIKGLKLLE-QLTPDLIILDVIMPEMDGF 73 Query: 63 --IAHVRQMPLGTDVFVYYLLME---VDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 H++ D+ V ++ + E + G GA ++ KP + + ++ Sbjct: 74 ETCRHLKTWEKTKDIPVIFMTAAMDTSNSEAKVKGLSLGAVDYITKPIQVDEVLARIKTH 133 Query: 118 PQMQ----KSKDENQFLD 131 ++ + + +N L Sbjct: 134 LHLRFLTLQLQQQNIRLQ 151 >gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 230 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+++ + + + V +A E + L P +V+D + G Sbjct: 1 MKTRILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNR-LHPALIVLDVMLPGL 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + +R + + + L + + G GA+ ++ KPF L ++ L Sbjct: 60 SGYDVCKQLRAKKI--NTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQAL 117 Query: 118 PQMQK 122 + + Sbjct: 118 LRRIE 122 >gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+V+ +R+ G++V +A E ++ + +ID + L Sbjct: 2 RLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMA-RDYPLDLAIIDLGLPRFSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R G + V L ++ + G AGA+ +L+KPF L ++ L + Sbjct: 61 ELIRALRAD--GRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRR 118 >gi|325859665|ref|ZP_08172795.1| response regulator receiver domain protein [Prevotella denticola CRIS 18C-A] gi|325482591|gb|EGC85594.1| response regulator receiver domain protein [Prevotella denticola CRIS 18C-A] Length = 716 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + +R + D + V A+ + + KE +P+ +V D M + Sbjct: 467 TVLVVDDNKDIRAYLQLTLQDT-YRVLLASDGRQGLQLA-KENIPDLIVSDVMMPVMDGL 524 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ L + V L + I G GA++++ KPF+ + L+ + L Q Sbjct: 525 ELCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKVRIGNLLQN 584 Query: 121 QKSKDEN 127 +K + Sbjct: 585 RKRLHQL 591 >gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + + G+ V A EA E E P+ +V+D M Sbjct: 1 MTKVLVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVES-FHPDVMVLDVMMPRLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + R++ + L ++ D + G GA+ ++ KPF+ + ++ L Sbjct: 60 GYDVC---RKLENRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALS 116 Query: 119 QMQKSKDENQF 129 + ++ + Q Sbjct: 117 RRSRTVENVQQ 127 >gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens DSM 7] gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens TA208] gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 227 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 7/128 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + V + F GF E + +E + +++D + + Sbjct: 1 MK-ILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDW-DLVILDIMLPSMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ + V + L + + G GA+ ++ KPF+ TL ++ + Sbjct: 59 GVTICRKIRE---TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVI 115 Query: 119 QMQKSKDE 126 + ++ + Sbjct: 116 RRYRATGQ 123 >gi|294675738|ref|YP_003576353.1| response regulator receiver domain/protein phosphatase 2C domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294474558|gb|ADE83946.1| response regulator receiver domain/protein phosphatase 2C domain protein [Rhodobacter capsulatus SB 1003] Length = 409 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S + R++ L + G+ V EA + EA + C + + P++++ D M G+ Sbjct: 3 RRVLVVDDSKMQRRILSALLSRSGYEVLEAGTAEEALDICGR-IEPDFVLSDWMMPGMSG 61 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116 +EF R MP + L + + + G ++GA+ FL KP N + LR + Sbjct: 62 IEFCQQFRAMPREGYGYFILLTSKTEKHDVAEGLQSGADDFLAKPVNGDELRARLMAGER 121 Query: 117 LPQMQKSKDE-NQFLD 131 + M+ + E N+ L Sbjct: 122 ILTMEHAMKEKNRQLS 137 >gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L++D +R + + GF + ++ E++ + + +++D M + Sbjct: 1 MKDRILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEV-DLIILDIMMPQM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + ++ + L + + I+G AGA+ +L KPFN L ++ + Sbjct: 60 NGIEAAFKIREE-KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIR 118 Query: 120 MQKSKDE 126 K ++ Sbjct: 119 RYKKYNQ 125 >gi|288959103|ref|YP_003449444.1| two-component response regulator [Azospirillum sp. B510] gi|288911411|dbj|BAI72900.1| two-component response regulator [Azospirillum sp. B510] Length = 134 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 4/121 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57 M ++L+VD + + L GF V A EA E P+ +++D M Sbjct: 1 MKPTILVVDDEPSIVLSLQVLMQRAGFDVRIARDGDEALRSVET-FTPDLILLDAMMPKR 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + +R P + + L + G GA ++ KPF+ L +R Sbjct: 60 DGFDVCQTLRTNPAWKTLPIIMLTARSRDVERQKGLALGATDYITKPFSTRDLLATVRRH 119 Query: 118 P 118 Sbjct: 120 L 120 >gi|227484933|ref|ZP_03915249.1| response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227237088|gb|EEI87103.1| response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 231 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +L++D +R+ + + G+ EA S EA ++E P ++D + G+ Sbjct: 3 NKILILDDEDPIRQFMKINLDYQGYQTVEAASGEEALRIFDEE-QPAVAILDIMLPGISG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + + + I G GA+ +++KPFN + L ++ L + Sbjct: 62 FEVCEKIRTKSPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVKSLMRRV 121 Query: 122 KS 123 Sbjct: 122 NL 123 >gi|119493892|ref|ZP_01624456.1| Response regulator receiver domain protein (CheY) [Lyngbya sp. PCC 8106] gi|119452369|gb|EAW33561.1| Response regulator receiver domain protein (CheY) [Lyngbya sp. PCC 8106] Length = 117 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 3/117 (2%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEF 62 ++V+ S R++ +L D G V A+ EA E +K P+ +V+D M + E Sbjct: 1 MVVEDSVTQREMISNLLKDSGLHVTVASDGVEALEQVQKHC-PDLVVLDIVMPRMNGYEL 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ P + V + + G + GA++++ KPF L +++L + Sbjct: 60 CRRLKSDPKTQSIAVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 116 >gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB [Myxococcus xanthus DK 1622] gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB [Myxococcus xanthus DK 1622] Length = 229 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L++D + ++ G + + EA +E P+ +++D + + Sbjct: 1 MPHVLIIDDERDLAELIDFNLRGSGLTTHVSHTGEEAL-VAAREQNPDLVLLDLMLPDMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +R P V + L + + I G GA+ +++KPF+ L ++ + Sbjct: 60 GIDVCRQLRASPQSRGVLIVMLTAKGEESDRIRGFEVGADDYVVKPFSVRELVLRLKAIL 119 Query: 119 QM 120 + Sbjct: 120 RR 121 >gi|305667235|ref|YP_003863522.1| two-component system transcriptional regulator [Maribacter sp. HTCC2170] gi|88708169|gb|EAR00407.1| two-component system, transcriptional regulatory protein [Maribacter sp. HTCC2170] Length = 237 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + F V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGIVLKDYLSMNNFDVTLAKNGMEGFEKFKKDNY-DVCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +V + +L + E ++ G +AGA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAREIREKNENVPIVFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLMKLKAILQRK 124 Query: 122 KS 123 S Sbjct: 125 AS 126 >gi|320101577|ref|YP_004177168.1| winged helix family two component transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319748859|gb|ADV60619.1| two component transcriptional regulator, winged helix family [Isosphaera pallida ATCC 43644] Length = 236 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L++D + +V GF V A + + LP+ +V+D + L Sbjct: 5 RILVIDDERSLVEVLAINLEREGFEVMTAFDGQDGLRQAQV-KLPDLIVLDLMLPVKPGL 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R DV V L + + + G GA+ ++ KP+ + L ++ Sbjct: 64 EVCRELRADSRTRDVPVIMLTAKTEETDELVGFAMGADDYVSKPYRMKVLIQRIKTQLNR 123 Query: 121 QKSKD 125 ++ + Sbjct: 124 RRQTE 128 >gi|319901471|ref|YP_004161199.1| integral membrane sensor hybrid histidine kinase [Bacteroides helcogenes P 36-108] gi|319416502|gb|ADV43613.1| integral membrane sensor hybrid histidine kinase [Bacteroides helcogenes P 36-108] Length = 1345 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+V+ + +R+ + F + EA + +A + K+ + ++ D M + Sbjct: 1099 TVLIVEDNRELRQYLMSSLSAL-FNMLEAENGQKALDIL-KDKEVDLIITDVMMPVMDGV 1156 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + VY L +VD + + G + GA+ ++ KPF+ E L+ + + + Sbjct: 1157 KLCKLMKQNLRTCHIPVYMLSAKVDVKYQLEGLQVGADDYIAKPFSMEVLKAKILNMLRT 1216 Query: 121 Q 121 + Sbjct: 1217 R 1217 >gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22] gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22] Length = 1793 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1673 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1732 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1733 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVDPDHLLGVMEQWMR 1791 >gi|239989346|ref|ZP_04710010.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 256 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+V+ +R+ + +G+ V A E + L++D + + Sbjct: 26 SVLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAH-DLLILDVMLPALDGI 84 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V V + D ++AG AGA+ +++KP + + +R L + Sbjct: 85 GLCHRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRR 141 >gi|222084364|ref|YP_002542893.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221721812|gb|ACM24968.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 239 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 SLLLV+ +R + + V EA A + P+ +++D + G Sbjct: 5 SLLLVEDDREIRALLEEFLTREDYTV-EAVDSAAAMDRALARGFPDLIILDLMLPGEDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L + + I G GA+ +L KPFN L +R + + Sbjct: 64 SACRRIRTRSR---VPILMLTAKSEDIDRILGLEMGADDYLGKPFNPRELLARIRAILRR 120 Query: 121 QKSKDENQ 128 + + Sbjct: 121 AGPERPEE 128 >gi|160879822|ref|YP_001558790.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428488|gb|ABX42051.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 224 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 57/132 (43%), Gaps = 5/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD R+ + + + ++VF A++ EA + + + +V+D M + Sbjct: 1 MIHILVVDDDKNTRRFMKAVLEEEQYIVFTASNGVEALDILDTTH-IDLVVLDIMMPKMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + ++ + + + G + G + F+ KP + E + ++ L Sbjct: 60 GYEFTEILRSVQN--ELPILMVSAKQLPADRKKGFQVGIDDFMTKPVDAEEMVLRIKALL 117 Query: 119 QMQKSKDENQFL 130 + K E + + Sbjct: 118 RRAKITSERKIM 129 >gi|91775069|ref|YP_544825.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91709056|gb|ABE48984.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 233 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL+D + ++ F + A E + +V+D M Sbjct: 1 MLRILLIDDDVELCQMMEEYLGAEDFSLTIAHDGEEGARLALSGEH-DLVVLDVMMPRFN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + +R + + V L + D I G GA+ +L KPFN L +R + Sbjct: 60 GFDTLRLIRAS---SQIPVIMLTAKGDEIDRIVGLELGADDYLSKPFNPRELVARLRAIQ 116 Query: 119 QMQKSKDE 126 + +DE Sbjct: 117 RRVVVRDE 124 >gi|86359025|ref|YP_470917.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86283127|gb|ABC92190.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 444 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 1/131 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD +R+ GF V ++ E P +V D M G+ Sbjct: 5 KILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYS-FPGVVVSDIRMPGMDGM 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + +V V + D + + R GA F+ KPF E L +R + + Sbjct: 64 TLMQKIREIDQEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAMERRG 123 Query: 123 SKDENQFLDAI 133 EN+ L A+ Sbjct: 124 LVLENRLLKAV 134 >gi|313889059|ref|ZP_07822717.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844932|gb|EFR32335.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 230 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + + G+ VF A A E KE + +ID M + Sbjct: 4 TILVCDDERDILDAIKIYLKAEGYKVFTAEDGARALEII-KENEIHLAIIDIMMPVMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ ++ KPFN L + L + Sbjct: 63 TLIMKMREKT-NIPIIVLSAKGEVTDKIVGLNVGADDYITKPFNAVELTARVNSLIRR 119 >gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 268 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 42 RVLVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARR-FSPDVVVLDLGLPELDGL 100 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 Query: 121 QK 122 + Sbjct: 158 PR 159 >gi|187934520|ref|YP_001884517.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722673|gb|ACD23894.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 230 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 6/134 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R VF+A EA E E + +V+D M + Sbjct: 1 MYNVLVVDDEKEIRDAIEIYLRGENLKVFKAADGLEALEILNNEK-IHVIVLDIMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ +++KPFN L ++ + Sbjct: 60 GIRTCLKIRE-TENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRR 118 Query: 121 Q----KSKDENQFL 130 +DE Q L Sbjct: 119 YDKPLNIEDEEQVL 132 >gi|163867364|ref|YP_001608558.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476] gi|161017005|emb|CAK00563.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476] Length = 240 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LVD + G+ V T A + P+ + D M + Sbjct: 9 QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHP-PHLAIFDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L +R + + Sbjct: 68 M-ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVRAILRRS 126 Query: 122 KSKDE 126 ++++ Sbjct: 127 NARNQ 131 >gi|160886208|ref|ZP_02067211.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483] gi|237723017|ref|ZP_04553498.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|260173666|ref|ZP_05760078.1| two-component system response regulator [Bacteroides sp. D2] gi|293372570|ref|ZP_06618952.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|299146715|ref|ZP_07039783.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|315921928|ref|ZP_07918168.1| two-component system response regulator [Bacteroides sp. D2] gi|156108093|gb|EDO09838.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483] gi|229447539|gb|EEO53330.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|292632379|gb|EFF50975.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|298517206|gb|EFI41087.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|313695803|gb|EFS32638.1| two-component system response regulator [Bacteroides sp. D2] Length = 229 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + +++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAMKMDISSY--HLILLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|126652243|ref|ZP_01724422.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905] gi|126590975|gb|EAZ85087.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905] Length = 234 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + + + A A + + P+ ++D + + Sbjct: 3 KRILVVEDDVAIANLIKMTLATQQYEFDIAQDGNRALQKAIT-MKPDVYILDLGLPDIDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ T + + + I AGA+ ++ KPF+ E L +R + Sbjct: 62 V-ELITKIRSWTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRR 119 >gi|92115368|ref|YP_575296.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798458|gb|ABE60597.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 229 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD +R++ + V EA + A + L+ M G Sbjct: 4 KTVLIVDDEASIREMIAVALEMADYRVLEADNAQAAHAMVVDDQPDLLLLD-WMMPGTSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E +++ ++ + L + + + I G AGA+ ++ KPF+ L ++ + + Sbjct: 63 IELARRLKRDTATAELPIILLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLR 122 Query: 120 M 120 Sbjct: 123 R 123 >gi|83646439|ref|YP_434874.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396] gi|83634482|gb|ABC30449.1| FOG: EAL domain [Hahella chejuensis KCTC 2396] Length = 568 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+VD K+ +F GF E P+ +++D M G Sbjct: 8 RLLIVDDEQRNTKLLTDIFRAQGFDAIPLNDANEVIGAV-ASYEPDLIILDVMMPGKTGF 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + L D + ++G GA ++ KPFNR L + L ++ Sbjct: 67 ELTREIKAQEHWKHIPIILLTALADRDSCVSGLECGAEDYVSKPFNRRELLARVNNLLKL 126 Query: 121 QKSKD 125 +K D Sbjct: 127 KKLHD 131 >gi|15893814|ref|NP_347163.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023387|gb|AAK78503.1|AE007567_5 Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum ATCC 824] gi|325507938|gb|ADZ19574.1| Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + K L GF V A++ +A + + +ID S+ Sbjct: 1 MKHIFLVEDDKAIAKNLTLLLRSEGFTVNHASTRSDAIGALDGNK-FDLALIDISLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++ DV V +L D ++ G GA+ ++ KPF L +R Sbjct: 60 GFTVCTEIKEK---QDVPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTAL 116 Query: 119 QMQKS 123 + S Sbjct: 117 RKSGS 121 >gi|71898251|ref|ZP_00680425.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71731990|gb|EAO34047.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] Length = 394 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 5/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + + G V A + +V+D ++ G+ Sbjct: 171 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHE-FDAIVLDLNLPGMDGI 229 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V L + + G +GA+ +L+KPF + + + L + Sbjct: 230 EVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 288 Query: 121 QKSKDENQFLD 131 K + + L+ Sbjct: 289 GKGL-QTRVLE 298 >gi|16128670|ref|NP_415222.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli str. K-12 substr. MG1655] gi|89107552|ref|AP_001332.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli str. K-12 substr. W3110] gi|170080361|ref|YP_001729681.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli str. K-12 substr. DH10B] gi|170682921|ref|YP_001742805.1| DNA-binding transcriptional activator KdpE [Escherichia coli SMS-3-5] gi|188495689|ref|ZP_03002959.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli 53638] gi|218699050|ref|YP_002406679.1| DNA-binding transcriptional activator KdpE [Escherichia coli IAI39] gi|238899960|ref|YP_002925756.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli BW2952] gi|256023705|ref|ZP_05437570.1| DNA-binding transcriptional activator KdpE [Escherichia sp. 4_1_40B] gi|300937843|ref|ZP_07152637.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 21-1] gi|300951198|ref|ZP_07165057.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 116-1] gi|300959271|ref|ZP_07171343.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 175-1] gi|301028821|ref|ZP_07191999.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 196-1] gi|301645940|ref|ZP_07245851.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 146-1] gi|307137300|ref|ZP_07496656.1| DNA-binding transcriptional activator KdpE [Escherichia coli H736] gi|312970765|ref|ZP_07784946.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli 1827-70] gi|331641191|ref|ZP_08342326.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli H736] gi|2507374|sp|P21866|KDPE_ECOLI RecName: Full=KDP operon transcriptional regulatory protein kdpE gi|1786911|gb|AAC73788.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli str. K-12 substr. MG1655] gi|85674742|dbj|BAA35351.2| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli str. K12 substr. W3110] gi|169888196|gb|ACB01903.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli str. K-12 substr. DH10B] gi|170520639|gb|ACB18817.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli SMS-3-5] gi|188490888|gb|EDU65991.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli 53638] gi|218369036|emb|CAR16790.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli IAI39] gi|238860865|gb|ACR62863.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli BW2952] gi|260450151|gb|ACX40573.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|299878183|gb|EFI86394.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 196-1] gi|300314143|gb|EFJ63927.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 175-1] gi|300449540|gb|EFK13160.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 116-1] gi|300457127|gb|EFK20620.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 21-1] gi|301075799|gb|EFK90605.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 146-1] gi|309700920|emb|CBJ00217.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli ETEC H10407] gi|310337414|gb|EFQ02552.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli 1827-70] gi|315135350|dbj|BAJ42509.1| DNA-binding transcriptional activator KdpE [Escherichia coli DH1] gi|315616391|gb|EFU97008.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli 3431] gi|323938337|gb|EGB34592.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323972049|gb|EGB67265.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|331037989|gb|EGI10209.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli H736] Length = 225 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|317493397|ref|ZP_07951818.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918340|gb|EFV39678.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 236 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 SLLL+D +R + F GF V + + +++ + + +++D M G+ F Sbjct: 6 SLLLIDDDAEIRSLLTEYFTRAGFSVIALPDGEKLMQTLQQQSV-DLIILDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + V + L D + G GA+ +L KPF+ L ++ L + + Sbjct: 65 TLC-RMVRNTSSVPIIMLTAASDETDKVIGLELGADDYLAKPFSARELLARVKALLRRNQ 123 Query: 123 SKD 125 Sbjct: 124 IAQ 126 >gi|315178867|gb|ADT85781.1| transcriptional regulator CpxR [Vibrio furnissii NCTC 11218] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + + + GF V EA + +++D M + Sbjct: 1 MAHILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAV--NDSVDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GM-ETLKKLREKWQTPALMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKSKDENQ 128 + +++ Sbjct: 118 TGNHTQSK 125 >gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + ++ G+ V +A E + +++D + + Sbjct: 4 KILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKY-DLVLLDIMLPQLSGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V L ++G +GA+ ++ KPF E L +R + + Sbjct: 63 -EVLRRLRRESDLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKR 120 >gi|303246260|ref|ZP_07332540.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio fructosovorans JJ] gi|302492323|gb|EFL52195.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio fructosovorans JJ] Length = 366 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + R + F V A + EA E P+ +++D M G+ Sbjct: 5 KSVLVVDDTPDNIFILREILAPE-FTVLAARNGPEALEVATNVPRPDCILLDVLMPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ M + + V ++ D G GA F+ KP + +R + Sbjct: 64 YEVCRRLKAMDITRRIPVLFVTTLDDVRDETRGLELGAVDFITKPVRPPVVLARVRTHLR 123 Query: 120 MQKSKD 125 ++ +D Sbjct: 124 LKAYQD 129 >gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG G + +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|254283593|ref|ZP_04958561.1| adenylate/guanylate cyclase [gamma proteobacterium NOR51-B] gi|219679796|gb|EED36145.1| adenylate/guanylate cyclase [gamma proteobacterium NOR51-B] Length = 479 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L VD R++ L + G V A S EA E + + +++D M G E Sbjct: 127 ILAVDDMPENRELISRLLHRSGHTVITAESGEEALELLGT-MAVDVVLLDLMMPGIGGAE 185 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ P V + D +++I +AGA+ +LLKPFN L+ + + + Sbjct: 186 VLRRLKDDPELRATPVVMISGRQDMQQIIGCIQAGADDYLLKPFNPVVLQARISAGIERK 245 Query: 122 KSKDENQF 129 + D Q Sbjct: 246 RWHDREQQ 253 >gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 234 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ + + G++V S EA E + E + +++D + G+ F Sbjct: 8 ILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEK-FDLIILDVMLPGIGGFE 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R L + V V L I G AGA+ +L+KPFN + + + + Sbjct: 67 VCERIRTLDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRR 123 >gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC 10782] gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC 10782] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L + + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] Length = 219 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + G+ V A A F + +V+D + + Sbjct: 2 RILVVEDEPTLAAQLADALRGAGYTVDVAGDGESA-RFLGDVETFDAVVLDLGLPVMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ V L ++ + +AG AGA+ +L KPF+ E L +R L + Sbjct: 61 TVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRST 120 Query: 123 SKDENQ 128 + Q Sbjct: 121 AHASAQ 126 >gi|289628311|ref|ZP_06461265.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647904|ref|ZP_06479247.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. aesculi str. 2250] gi|298488175|ref|ZP_07006212.1| Copper-sensing two-component system response regulator CpxR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157454|gb|EFH98537.1| Copper-sensing two-component system response regulator CpxR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869383|gb|EGH04092.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LLVD + ++ F V S E E + +V+D M + Sbjct: 1 MTRVLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEG-EIEALSGRHDIVVLDIMMPRMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R + V V L D I+G GA+ ++ KP + L +R + Sbjct: 60 GIEVLRRIRAQ---SQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIM 116 Query: 119 QMQKS 123 + ++ Sbjct: 117 RRVRA 121 >gi|302551257|ref|ZP_07303599.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302468875|gb|EFL31968.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 272 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 9/126 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL++ + + FG V + + + + +++D + + Sbjct: 4 RVLLIEDDETIAEPLTEGLGHFGLTVDHVATGTDGL----RGPYNDVVLLDLGLPDMDGI 59 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ+ +DV + L + + G GA+ +L KPF+ L +R + + Sbjct: 60 DVCRGIRQV---SDVPIVILSARGEEADRVLGLELGADDYLAKPFSVRELVARVRAVTRR 116 Query: 121 QKSKDE 126 + + Sbjct: 117 TQRGRQ 122 >gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 232 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ + G+ A A + + L P+ +V+D + G+ Sbjct: 1 MSTILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAAR-LQPDAVVLDVMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V V L D M+ G GA+ ++ KPF+ L ++ L + Sbjct: 60 GLEVCRRIQADRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRR 118 Query: 121 QKSKDE 126 + Sbjct: 119 VDRAAQ 124 >gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 246 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ +A S EA +++D M + Sbjct: 19 MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 77 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + + + I G GA+ ++ KPFN + ++ L + Sbjct: 78 GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 136 Query: 121 QKSKDEN 127 +++ N Sbjct: 137 SQNEVTN 143 >gi|188584893|ref|YP_001916438.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349580|gb|ACB83850.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 126 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + GF V AT+ + ++E P+ +++D + + Sbjct: 1 MPKILVIEDEKNIVIPLKLYLQKQGFEVLVATNGVDGVSLAQEEK-PDVILLDIILPKMN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +++ + + ++ + + ++ G + +L+KPF L +++ Sbjct: 60 GYLVCEALKENEETKHIPIIFITAKSNETEIEKALAMGGDDYLIKPFTHTKLYEVIKKYL 119 Query: 119 QMQKSKD 125 + + S + Sbjct: 120 KEENSHE 126 >gi|91774108|ref|YP_566800.1| response regulator receiver [Methanococcoides burtonii DSM 6242] gi|91713123|gb|ABE53050.1| PhoP-containing response regulator receiver [Methanococcoides burtonii DSM 6242] Length = 356 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ R + A + +A + +E LP+ +++D M + Sbjct: 227 KILVVDDEPDIPELIRLSLATEPYDFIVAYNGEDAVKKSIEE-LPDLILLDIMMPDMDGY 285 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ P D+ V + + + E + G G + ++ KPF++ + ++ + + Sbjct: 286 EVVERLKEDPYARDIAVIMVSAKTEIEDKLKGMELGIDDYISKPFDKREINARIKMVMKR 345 >gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium diphtheriae] Length = 240 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 73 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 Query: 121 QK 122 + Sbjct: 130 PR 131 >gi|260060660|ref|YP_003193740.1| two-component system sensor histidine kinase/response regulator [Robiginitalea biformata HTCC2501] gi|88784790|gb|EAR15959.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Robiginitalea biformata HTCC2501] Length = 969 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LLV+ + +R+ + + + V A + E E +P+ +V D M E Sbjct: 722 ILLVEDNADLRRFVGEVLQEK-YRVLYAEDGFQG-ERMAIEHIPDVVVSDVMMPRKDGYE 779 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + + L E + G GA ++L KPF L +R L Q Sbjct: 780 LCHALKTNTKTSHIPIILLTARAGQENKMEGLFQGAEAYLTKPFEARELLVRIRNLMGRQ 839 Query: 122 KS 123 K+ Sbjct: 840 KA 841 >gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1034 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LL + + + V + F V A + EA E +E P ++ID M + Sbjct: 901 TILLAEDNEMTIDVVSDYLHYLNFEVVVARNGYEAIERA-QEYRPALILIDIQMPVMDGL 959 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R +P + L AGAN +L KP + L ++++ + Sbjct: 960 HAIRELRALPAFRTTPIIALTALAMQGDRERCLAAGANEYLSKPISLHGLVEVIQQILRG 1019 Query: 121 QK 122 QK Sbjct: 1020 QK 1021 >gi|323342107|ref|ZP_08082340.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464532|gb|EFY09725.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ +R++ R+ GF V+ A E E + + +++D + Sbjct: 3 KKILIIEDEEGIRRLLRYDLKQMGFDVYSAKDGREGLEMALQGQY-DVIIVDWMLPYHDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + G + L + + ++ AG + +L KPF+ L + + Sbjct: 62 IELVAKFRDRGLKAILIMLTAKDEEADILEAFDAGVDDYLSKPFSPRELSARITAHLRRV 121 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 122 DMNHELRRIE 131 >gi|302877990|ref|YP_003846554.1| response regulator receiver modulated metal dependent phosphohydrolase [Gallionella capsiferriformans ES-2] gi|302580779|gb|ADL54790.1| response regulator receiver modulated metal dependent phosphohydrolase [Gallionella capsiferriformans ES-2] Length = 379 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L++D S + + L + + A S + +E +P+ +++D M G+ Sbjct: 10 TVLVIDDSPEILLIINELLKK-DYRIKAANSGEKGLRLAREEPIPDLILLDIMMPGINGH 68 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V +L + G + GA ++ KP + LR ++ M Sbjct: 69 EVCRTLKADRSTRDIPVIFLTAMHNECDEEQGLKLGAADYIGKPISGPILRARVKTHLAM 128 Query: 121 QKSKD 125 ++S D Sbjct: 129 KQSAD 133 >gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ + R+ + G+ + A+ EA + +++D + + Sbjct: 1 MQHILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALF-SSAHFDLILLDIMLPKID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + V + L E+ I G + ++ KPF+ L + + Sbjct: 60 GFTVCELIRKQ---SQVPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVL 116 Query: 119 QMQKSKDENQ 128 + E + Sbjct: 117 RRSSMIPEQE 126 >gi|182415664|ref|YP_001820730.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177842878|gb|ACB77130.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 378 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + G+ + +A S A E E P+ +++D M G+ Sbjct: 13 RKILVVDDDRLNIRILSGILKTQGYALADADSGERALELYP-EFRPDLVLLDVVMPGLNG 71 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ + ++ + + + ++ G AG +L KPF + + ++ + Sbjct: 72 FETCRKLKDTYGDACAPIVFITAKNESDDVVEGFSAGGVDYLPKPFQAKEVLVRIQTHLR 131 Query: 120 MQKSKDENQFL 130 Q ++ + L Sbjct: 132 NQLLTEQQKSL 142 >gi|197119652|ref|YP_002140079.1| sigma-54-dependent transcriptional response regulator AtoC [Geobacter bemidjiensis Bem] gi|197089012|gb|ACH40283.1| sigma-54-dependent transcriptional response regulator AtoC [Geobacter bemidjiensis Bem] Length = 458 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + D G+ A EA C +E LP +++D M + Sbjct: 4 TILIVDDEEGIRSSLAGILEDEGYRTVCAADGVEALALCARE-LPGLVLLDIWMPKMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V + E + + GA F+ KP + E + + M + Sbjct: 63 ETLQRLKESHPFLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALAMNR 122 Query: 123 SKDENQFL 130 K+EN L Sbjct: 123 LKEENAAL 130 >gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ R ++ G++V A + E E + L++D + G + Sbjct: 2 RILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDY-DLLILDVMLPGQDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L D + G GA+ +L KPF+ L +R + + K Sbjct: 61 T-LLHNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGK 119 Query: 123 SKDENQF 129 ++ Sbjct: 120 PRETMSL 126 >gi|21241099|ref|NP_640681.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106398|gb|AAM35217.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 227 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + V + G+ +A + P+ +++D + G L+ Sbjct: 10 VLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQ-QPDLVLLDLMLPNRGGLD 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V + V+ + G GA+ ++ KPF+ + ++ + + Sbjct: 69 ICRDLRNESA---VPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRH 125 Query: 122 K 122 + Sbjct: 126 R 126 >gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W] gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W] gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 227 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V + G+ A + EA E + +++D + + Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKF-GNGNWDLILLDVMLPNISGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L ++G GA+ ++ KPF E L +R ++ Sbjct: 63 EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122 Query: 123 SKDENQ 128 E + Sbjct: 123 VVKEEE 128 >gi|332829408|gb|EGK02062.1| hypothetical protein HMPREF9455_00184 [Dysgonomonas gadei ATCC BAA-286] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 2/134 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ + + + F V A + E E K L P+ +V D M + Sbjct: 1 MKIKVLLVEDEPALAMIIKDALEKREFTVDCAANGNEGLEMFHK-LHPDIIVADIMMPKL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + + +L + + ++ G G N +L KPF E L ++ L Sbjct: 60 DGFSMTQLIRQTDKHIPILFLSAKSKTDDVVQGFEIGGNDYLKKPFGMEELIVRIKSLLN 119 Query: 120 MQKSKDENQFLDAI 133 +++ + + I Sbjct: 120 RVQNEVRKEKIYQI 133 >gi|323701988|ref|ZP_08113657.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] gi|323533074|gb|EGB22944.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] Length = 448 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D + + G+ V T + +E+ P+ +V+D M + Sbjct: 4 RVLVIDDEERMCWALERALSHEGYQVITTTRGVQGVSLA-QEMDPSIVVLDLKMPDLDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + ++ V + E I + GA ++ KPF E L+ +++ + + Sbjct: 63 EVLRKIKDFNPNIPVIMITAHGTIETAIEAMKIGATDYITKPFKLEELKVVIKQALHVNQ 122 Query: 123 SKDENQF 129 +++ +F Sbjct: 123 LENQVEF 129 >gi|312112485|ref|YP_003990801.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217586|gb|ADP76190.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 232 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + + + V S EA + +++D MEG+ Sbjct: 4 KKILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALRII--NNNFDLIILDIMMEGIDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R D + ++ + E I G + ++ KPF+ + L+ + + Sbjct: 62 MELCSMIRDR---VDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLR 118 Query: 120 MQKSKDENQF 129 ++ N+ Sbjct: 119 REERIRSNER 128 >gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 1 MDSL---LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M S+ LL++ +R + G V A + + E +E P+ +V+D + Sbjct: 1 MTSVPFLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLP 59 Query: 58 GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ F +R + + L D ++ G +GA+ +++KP L +R Sbjct: 60 GIDGFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIR 116 Query: 116 ELPQMQKSKDEN 127 + + + + + Sbjct: 117 AVLRRGERESTD 128 >gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 227 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + GF+V A + E + +++D + G+ + Sbjct: 2 KILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAY-DLVILDVMLPGIDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G D+ V +L + + G GA+ +L+KPF L +R L + Sbjct: 61 SVLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGG 120 Query: 123 SKDENQFLDA 132 E++FL A Sbjct: 121 KATESEFLRA 130 >gi|240145147|ref|ZP_04743748.1| phosphate regulon response regulator PhoB [Roseburia intestinalis L1-82] gi|257202825|gb|EEV01110.1| phosphate regulon response regulator PhoB [Roseburia intestinalis L1-82] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ +V+ +R++ R+ + G+ V E + EK +P+ +++D + G Sbjct: 1 MATIYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKN-IPSLILLDIMLPGED 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R DV V + + + G GA+ ++ KPF L ++ L Sbjct: 60 GLDILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALL 119 Query: 119 QMQKSKDENQFL 130 + +E+ L Sbjct: 120 RRTSRINEDSQL 131 >gi|219854708|ref|YP_002471830.1| hypothetical protein CKR_1365 [Clostridium kluyveri NBRC 12016] gi|219568432|dbj|BAH06416.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 234 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSV-CEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +RK+ G+ A + E ++ P+ +++D + + Sbjct: 2 ILVVEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQ--PDIIILDLGLPDMDGV 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ ++V + + + I AGA+ +L KPF+ E L +R + + Sbjct: 60 -EIIKKVRTWSNVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVSLRRIR 118 >gi|218438132|ref|YP_002376461.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218170860|gb|ACK69593.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 227 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61 +LLV+ + + + N ++V EA + + N +ID + G+ Sbjct: 2 RILLVEDEPDLGEALKKALNQKKYIVDWVQDGTEAWNCLDSQWTEYNLAIIDWLLPGMSG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V L + E + G AGA+ +L+KPF L +R L + Sbjct: 62 IELIKRLRARQNSLPVLMLTAKDQMEDKVIGLDAGADDYLVKPFGMAELLARLRALGRRS 121 Query: 122 KSKDENQF 129 Q Sbjct: 122 PQLVPQQL 129 >gi|326777882|ref|ZP_08237147.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326658215|gb|EGE43061.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 250 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+V+ +R+ + +G+ V A E + L++D + + Sbjct: 20 SVLVVEDDATIRRAVQLALERYGYRVDVAADGLGGLEAFRAGAH-DLLILDVMLPELDGI 78 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V V + D ++AG AGA+ +++KP + + +R L + Sbjct: 79 GLCRRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRR 135 >gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 235 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + V++ S EA C + ++D + + Sbjct: 4 KILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEAL-VCIGSTDFDLAILDIMLPDISGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V L + I G GA+ ++ KPF L ++ + Sbjct: 63 SICQSIRSKEYTY--PVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRR 120 Query: 121 QK 122 K Sbjct: 121 YK 122 >gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ R + G+ V A+ +E + +V+D + G+ F Sbjct: 2 KLLIVEDESKTAHYLRTGLGEQGWAVDLASDGVTGLHLA-REFDYDVIVLDVMLPGMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ V L + + G GA+ +L+KPF+ L ++ L + + Sbjct: 61 -NVLRELRRSKQTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGR 119 Query: 123 SKDENQF 129 ++ + Sbjct: 120 QQEPTEL 126 >gi|152988681|ref|YP_001346380.1| two-component response regulator [Pseudomonas aeruginosa PA7] gi|150963839|gb|ABR85864.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 246 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 VLIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF+ L + + + Sbjct: 66 LCRELR-VGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1] gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 1616 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + ++V L D GF V A A + + +++D M + Sbjct: 1280 RILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAY-DMVLMDMQMPVMDGV 1338 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +R++ + + + AG N F+ KP + + L A+ Sbjct: 1339 AATREIRRLGQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAAL 1392 Score = 91.8 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEARE----FCEKELLPNYLVIDESME 57 +L+VD + R V L F V S EA + +++D M Sbjct: 1130 RRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDWRMP 1189 Query: 58 GVLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G+ H+ + L + + E + AG L+KP + L + Sbjct: 1190 GMDGIETAHHLMALGLDPAPRLLMVTAYGREEVLNLITEAGIEDVLIKPVSASILFDTIM 1249 Query: 116 ELP 118 L Sbjct: 1250 RLF 1252 >gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 246 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L+VD + +V F V A S +A +E+ P+ +++D ++ G+ Sbjct: 13 RALVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQA-REIDPDVVILDLALPGIDGV 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQ+ +D +V L I G GA+ ++ KPF+ L +R + + + Sbjct: 72 EVC-RQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPR 130 >gi|107103492|ref|ZP_01367410.1| hypothetical protein PaerPA_01004562 [Pseudomonas aeruginosa PACS2] Length = 777 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + I + V R + G+ V A + EA E +E P+ +++D M + F Sbjct: 651 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 709 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +P ++ V L AG + ++ KP E L+ + + Sbjct: 710 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 767 >gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185] gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185] Length = 221 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 8/134 (5%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +L+V+ ++++ + + V A+ E K+ + +++D M Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQS-FDLILLDVMMPN 59 Query: 59 VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F +R ++V + L + E + G G + ++ KPF+ L + Sbjct: 60 LNGFEVSKMIRSQ---SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEA 116 Query: 117 LPQMQKSKDENQFL 130 + + K+ N L Sbjct: 117 VLRRSYDKNVNNHL 130 >gi|227540417|ref|ZP_03970466.1| C4-dicarboxylate transport transcriptional regulatory protein [Sphingobacterium spiritivorum ATCC 33300] gi|227239741|gb|EEI89756.1| C4-dicarboxylate transport transcriptional regulatory protein [Sphingobacterium spiritivorum ATCC 33300] Length = 467 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 1/131 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L++D +R R + + VF+A + + E +KE + ++ D ME + Sbjct: 1 MTTILIIDDERAIRSTLREILEYEDYKVFDADNALDGLEILKKEK-IDLVLCDIKMEKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A L +V + E + + GA FL KP + + +R + Sbjct: 60 GLEALTFAQTLKPEVPFIMISGHGTVETAVEATKKGAYDFLSKPLDLNRILITVRNALER 119 Query: 121 QKSKDENQFLD 131 +E + L Sbjct: 120 GSLVEETKVLK 130 >gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ + +A + E EK + + +++D + + Sbjct: 1 MIKILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEV-DLVLLDIMLPEIN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ V L ++G AGA+ ++ KPF E L +R + Sbjct: 60 GL-EVLRRIRRSSDIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|256379954|ref|YP_003103614.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924257|gb|ACU39768.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + R + G+ V A E P+ +V+D + V Sbjct: 1 MTKVLVVDDEPQIVRALRINLSARGYQVLTAHDGAA-ALRAAAEGKPDVVVLDLGLPDVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + T V + L D + AGA+ ++ KPF + L +R + Sbjct: 60 G-TEVIAGLRGWTTVPIIVLSARADSTDKVEALDAGADDYVTKPFGMDELLARLRAAVRR 118 Query: 121 QKS 123 + Sbjct: 119 SAA 121 >gi|281421220|ref|ZP_06252219.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella copri DSM 18205] gi|281404755|gb|EFB35435.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella copri DSM 18205] Length = 1377 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LL VD + +RK R F D + V + S A ++ ++ + + +V D M G+ Sbjct: 1084 TLLFVDDNEDLRKYIRMTFGDS-YQVVDVESAEAALKYLKEGGVCDIVVSDVMMPGMHGD 1142 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 EF +++ + + V L + + MI G GA+ ++ KPF+ L + + + Sbjct: 1143 EFCRSIKENKETSWLPVILLTAKAGRDFMIEGLGLGADDYIAKPFDTAILASKVASILKN 1202 Query: 121 QKSKDE 126 ++ + Sbjct: 1203 RRRLSQ 1208 >gi|254445907|ref|ZP_05059383.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198260215|gb|EDY84523.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + V A EA E +E + +V+D S+ G Sbjct: 2 RILIVEDQADILRHVKRALERADHEVSVAIDGPEAVEVV-RERRFDLIVLDLSLPGFDGM 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R P+ V L + + + G AGA+ +L KPF+ + L + L + Sbjct: 61 EVMKRISPMDARPRVLMLTARGEIDDRVKGLNAGADDYLTKPFDMKELLARVEALGRR 118 >gi|120612957|ref|YP_972635.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120591421|gb|ABM34861.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 248 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 2/115 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + G +A EA ++L P+ +++D + G+ Sbjct: 14 VLVVEDEPGIATILSAYLQRDGLRARQAHDGLEALRLF-RQLKPDMVLLDIHLPGMDGL- 71 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + V + D + G R GA+ +++KPF+ + +R + Sbjct: 72 DLLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVL 126 >gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 241 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A + + +E+LP+ ++ D M Sbjct: 16 RLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGDDGWQKA-QEMLPDLVISDVMMPRCDGY 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + +R+ V +L + G AG + ++ KPF+ E L Sbjct: 75 GLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKPFDPEEL 124 >gi|22536308|ref|NP_687159.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|77412156|ref|ZP_00788478.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|22533130|gb|AAM99031.1|AE014196_27 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|77161774|gb|EAO72763.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + +K+ G+ A++ EA + E + ++ D M + Sbjct: 1 MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEV-QLIITDIMMPMMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R +V + + + E M G GA+ +++KP + L ++ L Sbjct: 60 GYQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALL 117 Query: 119 QMQKSKDENQFL 130 + ++Q + Sbjct: 118 RRANIVAQHQLI 129 >gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D +R++ ++ G+ V A+ EA E + V+D M Sbjct: 1 MIHILIADDDAHIRELLQYHLQTEGYTVLTASDGEEA-SVLLAEEQVHLAVVDVMMPNKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R DV V L + G G + +L KPF L F ++ L Sbjct: 60 GYQLCEEIR---RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALL 116 Query: 119 QMQKSKDENQ 128 + + ++ Sbjct: 117 RRYQMVSADK 126 >gi|325914197|ref|ZP_08176549.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539581|gb|EGD11225.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 238 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R+ G+ V +A + EA + +V+D + Sbjct: 12 RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEALALLAGQGA-ELVVLDIGLPDRDGH 70 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ ++V V L + + +A AGAN ++ KPF + L +R L + Sbjct: 71 EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQ 127 Query: 121 QKS 123 + Sbjct: 128 AGA 130 >gi|300118431|ref|ZP_07056177.1| two-component response regulator [Bacillus cereus SJ1] gi|298724216|gb|EFI64912.1| two-component response regulator [Bacillus cereus SJ1] Length = 208 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYISMTTY-DLIVLDIMIPGINGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] Length = 232 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M S+L+VD + ++ GF VF A + EA + + ++D M Sbjct: 1 MKQHSILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSND-IQLTILDIMMPA 59 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R+ ++ V +L + + G GA+ ++ KPF+ L ++ Sbjct: 60 MDGIEVCRRIREQ---YNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKA 116 Query: 117 LPQM 120 + Sbjct: 117 QLRR 120 >gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 241 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 5/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++LLV+ + G+ V A + ++ID + Sbjct: 17 RTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGG-IDLIIIDVMLPRLNG 75 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + +R + V L + G GA ++ KPF+ L ++ + + Sbjct: 76 FELLRILRNERRT--LPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLR 133 Query: 120 M 120 Sbjct: 134 R 134 >gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + F V E E + +++D + + Sbjct: 2 RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEP-FDVVILDIMLPVHDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + V L D E + G GA+ +L KPF+ L +R L + + Sbjct: 61 EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120 Query: 123 SKDENQF 129 + Sbjct: 121 ESKSTKL 127 >gi|160897316|ref|YP_001562898.1| response regulator receiver protein [Delftia acidovorans SPH-1] gi|160362900|gb|ABX34513.1| response regulator receiver protein [Delftia acidovorans SPH-1] Length = 123 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+ + +RK+ R + V EA + EA ++ P+ +++D M G Sbjct: 1 MKKILIAEDQADIRKLLRMTLESSAYEVMEAPTGDEAWALAQRS-QPDVVLLDMMMPGTL 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 LE ++ V L + AG AGA+ +LLKPF+ L + L Sbjct: 60 DGLEVCCRIKTSYDLRHTRVILLTARGSAQDREAGFNAGADEYLLKPFSPNRLLETLASL 119 Query: 118 PQ 119 + Sbjct: 120 YR 121 >gi|70732213|ref|YP_261969.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68346512|gb|AAY94118.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 465 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LL+VD + + + G VF A + A + E+E + ++ D M G+ Sbjct: 4 NLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQED-IDLVISDWRMPGMDGP 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++Q + V + + + R GA ++ KPF+ + L + + Q Sbjct: 63 QLLGEIKQR--YPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQF 120 Query: 121 QKSKDENQFLDA 132 + +NQ + A Sbjct: 121 RDILKDNQRMRA 132 >gi|75906290|ref|YP_320586.1| response regulator receiver domain-containing protein [Anabaena variabilis ATCC 29413] gi|75700015|gb|ABA19691.1| Response regulator receiver domain protein (CheY) [Anabaena variabilis ATCC 29413] Length = 196 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 5/134 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +R + + F V +A + + E +P+ ++ D +M Sbjct: 1 MTKILVIEDQEEIRSIIVEMLTAENFYVMDAENGQVGITLLQTE-IPDLIICDIAMPKID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ P + +L + + G GA+ +L+KPF R L A+ Sbjct: 60 GYEVVTWSRENPETEAIPFIFLTAKASQNDIRQGIELGADDYLVKPFTRAELLGAITARL 119 Query: 119 QMQK--SKDENQFL 130 + Q+ ++ Q L Sbjct: 120 EKQEIINRQTQQRL 133 >gi|88808835|ref|ZP_01124344.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88786777|gb|EAR17935.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 244 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 + +VD +R++ D G+ V + V + E + P+ +V+D M G Sbjct: 10 IWVVDDDPELRQMVGTYLIDQGYDVRSLSDVKQ-LEARLEFQRPDLVVLDLMMPGDDGLT 68 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A R G D+ V L + I G GA+ +L KPF L + + + + S Sbjct: 69 ALRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRSS 128 >gi|94312809|ref|YP_586018.1| winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356661|gb|ABF10749.1| two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 237 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + ++++D +R + + GF V + + + LV+D ME Sbjct: 5 NRIIVLDDEAELRNMLQRFLTGHGFHVRAVADGKQ-LNRYLQREPYDLLVLDLMMEPEDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G + + L + D + G GA+ +L KPF + L +R L + Q Sbjct: 64 LSVCRRLRAEGQTLPILMLTAKGDPADRVIGLDTGADDYLAKPFLPDELVARIRALLRRQ 123 Query: 122 KSKD 125 K Sbjct: 124 KIAA 127 >gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 239 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 7/130 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M LLLVD + ++ GF + A + E +E P+ +++D + Sbjct: 1 MAVLLLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLA-REGRPDLVLLDVMLPDL 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +R T V + +L + + G G + ++ KPFN + ++ Sbjct: 60 EGFEVCRRLRS---FTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQ 116 Query: 118 PQMQKSKDEN 127 + Q+ + Sbjct: 117 LRRQQLAGQQ 126 >gi|302546427|ref|ZP_07298769.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464045|gb|EFL27138.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1432 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD H+ G V A + E + + + +++D M + Sbjct: 1250 RRILIVDDDIRNVFALTHVLGRVGMTVKYAENGREGLDVLHRNPDVSLVLMDVMMPEMDG 1309 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R P D+ + L + +GAN ++ KP + + L + +L Sbjct: 1310 YETIRAIRGTPRLADLPIIALTAKAMPGDREKALESGANGYVPKPVDVDRLMSTVCDLL 1368 >gi|256420693|ref|YP_003121346.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035601|gb|ACU59145.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 236 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ H KV + G++V + E +E + ++D M G+ F Sbjct: 5 VLLVEDDHFFAKVIKSHLEKAGYLVVHCSDGEEGWNTF-QERPFDICLLDVVMPGMDGFA 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 ++ + + + + G G + +L+KPFN E L M + + Sbjct: 64 LAREIRDRNENIPIIFTTSRYMEQDKLNGFECGGDDYLVKPFNMEELLCRMDVFMKRSRL 123 Query: 124 KDENQFL 130 ++ + Sbjct: 124 LQNDKQI 130 >gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621] gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621] Length = 233 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + + G+ V +A E E+ + + +V+D M V Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEV-HLVVLDIMMPKVDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + I G GA+ ++ KPFN L ++ + Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|172035205|ref|YP_001801706.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171696659|gb|ACB49640.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 122 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++LL D S R++ L D GF V A EA E K L P+ +++D M Sbjct: 1 MPTILLADDSTAQRELIAGLLTDNGFSVTTAMDGAEALEKL-KSLAPDLIILDVVMPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++ P + V + G + GA+++++KPF E L +++L Sbjct: 60 GYQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIIKPFPHEELLGTVKQLL 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|319786347|ref|YP_004145822.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317464859|gb|ADV26591.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 238 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 4/129 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ + + ++ GF V A + E + +V+D + +E Sbjct: 11 VLVVEDNRNISEMIGEYLESRGFEVDYAADGLDGYRLA-AENSYDAVVLDLMLPRLDGIE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V L + + G GA+ +L KPF + L +R L + + Sbjct: 70 VCRRLRSDAR-KSTPVLMLTARDTLDDKLTGLGHGADDYLTKPFAIQELEARLRALIRRE 128 Query: 122 KSKDENQFL 130 + + ++ L Sbjct: 129 RRQVGSEVL 137 >gi|258517410|ref|YP_003193632.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257781115|gb|ACV65009.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 384 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD ++ G+ V+ A +A E +K + + +++D + L+ Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKK-VRIDAVILDWMLPDIQGLD 224 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ + + + + +F + G RAGA+ +++KPFN L + + Q Sbjct: 225 LCRRLREL---INPVIIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQ 281 Query: 122 KSKDENQFL 130 S E + L Sbjct: 282 TSSPEKEVL 290 >gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 8/136 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D +R + G+ V A + EA E P+ LV D M E Sbjct: 5 ILIADDDPGIRLAVKDYLELSGYSVVTAKNGQEALSLLET-YHPHLLVSDIKMPRTDGYE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +A VRQ P + V +L + + I G +AG + +L KPF E L +R L + Sbjct: 64 LVAQVRQRPEFRLLPVVFLTEKSTTHERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERS 123 Query: 122 KSKD-----ENQFLDA 132 + + +N+ L Sbjct: 124 QIMESEWRYKNRQLQE 139 >gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D +R + G+ V A + EA E P+ LV D M E Sbjct: 5 ILIADDDPGIRLAVKDFLELSGYSVVTAKNGQEALSLLET-YHPHLLVSDIKMPRTNGYE 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +A VRQ P + V +L + + I G +AG + +L KPF E L +R L + Sbjct: 64 LVAQVRQRPEFRLLPVVFLTEKSTTSERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERS 123 Query: 122 KSKD 125 + + Sbjct: 124 QIIE 127 >gi|74311219|ref|YP_309638.1| DNA-binding transcriptional activator KdpE [Shigella sonnei Ss046] gi|73854696|gb|AAZ87403.1| regulator of kdp operon [Shigella sonnei Ss046] gi|323163949|gb|EFZ49758.1| KDP operon transcriptional regulatory protein kdpE [Shigella sonnei 53G] gi|333010096|gb|EGK29531.1| KDP operon transcriptional regulatory protein kdpE [Shigella flexneri K-272] gi|333021048|gb|EGK40305.1| KDP operon transcriptional regulatory protein kdpE [Shigella flexneri K-227] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|157160174|ref|YP_001457492.1| DNA-binding transcriptional activator KdpE [Escherichia coli HS] gi|331662050|ref|ZP_08362973.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli TA143] gi|157065854|gb|ABV05109.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli HS] gi|284920479|emb|CBG33541.1| two-component response regulator [Escherichia coli 042] gi|331060472|gb|EGI32436.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli TA143] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + + R GF V + + L P +V+D + G+ Sbjct: 5 VLVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRR-LAPVAVVLDVGLPGLDGVE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V ++ D I G GA+ ++ KPF+ L +R + + Sbjct: 64 VCRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRR 120 >gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G++V +A E F + +++D + + Sbjct: 2 RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 123 SKDENQFL 130 ++ + Sbjct: 121 GHASSEII 128 >gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ +A S EA +++D M + Sbjct: 1 MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + + + I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDEN 127 +++ N Sbjct: 119 SQNEVTN 125 >gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 5/115 (4%) Query: 8 DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIAH 65 + +R G+ V + +A ++ P+ +V+D + G + Sbjct: 2 EDDAHIRLGLCDALRGEGYEVSDCRDGAQALPII-RQRRPDLVVLDIMLPGKSGFDLCRE 60 Query: 66 VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + L + + G GA+ ++ KPF+ L ++ L + Sbjct: 61 LRAEKNC--TPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRR 113 >gi|153811679|ref|ZP_01964347.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174] gi|149832420|gb|EDM87505.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174] Length = 233 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ +R + + A + EA P+ +++D + Sbjct: 1 MNKTSILIVEDDRPIRNLIVTTLKTHEYKYLTAENGREAILEASSHN-PDIILLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++++ +++ + + + I AGA+ ++ KPF+ E L +R Sbjct: 60 MEGV-DVIKKIRTWSNMPIIVISARSEDSDKIEALDAGADDYITKPFSVEELLARIRVTQ 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|154483201|ref|ZP_02025649.1| hypothetical protein EUBVEN_00902 [Eubacterium ventriosum ATCC 27560] gi|149736009|gb|EDM51895.1| hypothetical protein EUBVEN_00902 [Eubacterium ventriosum ATCC 27560] Length = 233 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + + A A P+ +++D + Sbjct: 1 MNKSLILVVEDDTSVRNLITTTLKAHEYRYLTAPDGQSAILEASSHN-PDIVLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++++ +++ + + + I AGA+ +L KPF+ E L +R Sbjct: 60 MDGV-EIIKKIRTWSNMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQ 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|332535746|ref|ZP_08411492.1| response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332034854|gb|EGI71386.1| response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 549 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 55/137 (40%), Gaps = 7/137 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + R + + G+ + A + +A ++E + +++D M + Sbjct: 1 MIHVLIVDDQALNRILLSKMLEQEGYKISVAYNGLDALNVLKRE-QIDIVLLDVLMPVMD 59 Query: 61 EFIAHVRQMPLGTDV--FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F A + ++V + ++ D G + F+ KPF + L ++ Sbjct: 60 GFEAAEKIKQQYSEVYLPIIFITSLDDQASFERCLEVGGDDFIHKPFEKVILHAKIKAHS 119 Query: 119 QMQKSKD----ENQFLD 131 + ++ + + L+ Sbjct: 120 RTRELSKKSNQQKKLLE 136 >gi|302339669|ref|YP_003804875.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301636854|gb|ADK82281.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 245 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD I + + GF + A EA E K P+ +++D M + Sbjct: 5 TKILIVDDEPINLDFFDVMLSKLGFEIGRAEDGEEALEQI-KSFNPDLIILDNVMPKMSG 63 Query: 62 --FIAHVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 V+Q P D+ + D + I G G ++ KPFN + +R Sbjct: 64 WQVTRIVKQDPLFEKYHDIPIIMFSAMDDVKDKIEGFELGVEDYITKPFNFSEVLARIRA 123 Query: 117 LPQMQKSKDE 126 + + ++ + Sbjct: 124 VLRGKELYQQ 133 >gi|255280825|ref|ZP_05345380.1| KDP operon transcriptional regulatory protein KdpE [Bryantella formatexigens DSM 14469] gi|255268762|gb|EET61967.1| KDP operon transcriptional regulatory protein KdpE [Bryantella formatexigens DSM 14469] Length = 233 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 5/134 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + + A + A P+ +++D + Sbjct: 1 MNKPLILVVEDDAPVRNLITTTLKTNDYRYLAAVNGATAILEASSHN-PDIILLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + +++ + + + I AGA+ +L KPF+ E L +R + Sbjct: 60 MDGV-EVIENIRSWSNLPIIVISARSEDTDKIKALDAGADDYLTKPFSVEELLARLR-VT 117 Query: 119 QMQKSKDENQFLDA 132 Q + S + L A Sbjct: 118 QRRLSFMSAEMLSA 131 >gi|257059245|ref|YP_003137133.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256589411|gb|ACV00298.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 715 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD ++ R G+ V + A + + + +++D + E Sbjct: 9 LLIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVT-DLILLDIKLPDYDGYE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V +L + + G G ++ KPF E + + +Q Sbjct: 68 ICRRLKADEQTAHIPVIFLSALNETFDKVQGFAVGGADYITKPFQIEEVLARVATHLSIQ 127 Query: 122 KSKDENQ 128 + + Q Sbjct: 128 RLQTSLQ 134 >gi|254410981|ref|ZP_05024759.1| hypothetical protein MC7420_459 [Microcoleus chthonoplastes PCC 7420] gi|196182336|gb|EDX77322.1| hypothetical protein MC7420_459 [Microcoleus chthonoplastes PCC 7420] Length = 127 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++L+V+ + + L G V A EA E ++ PN +++D + + Sbjct: 1 MSTVLVVEDDLTQQHLLSKLLERVGLTVIVAGDGVEALEKI-QQFHPNLVILDIVLPRMN 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P ++ V + + G + GA+++L KP + + + +++L Sbjct: 60 GYEVCRRLKSEPETENIPVLMCSAKKEDFDRYWGMKQGADAYLAKPCHPQEIVETVKKLL 119 Query: 119 QMQKSKD 125 + Sbjct: 120 KSHHQAA 126 >gi|218781281|ref|YP_002432599.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218762665|gb|ACL05131.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 208 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 7/132 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ + R + +G+ A + EA + ++ + ++D M + Sbjct: 2 NILIAEDDATSRHFLEAILTQWGYETTTAKNGAEAWQIL-QDKKFSLFLLDWMMPEMDGL 60 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + G + ++ L D + +++G AGA+ ++ KPFNR L+ ++ Sbjct: 61 ELCQKIRSLCEGDN-YIILLTARKDPKDIVSGLEAGADDYICKPFNRLELQARIKA---G 116 Query: 121 QKSKDENQFLDA 132 ++ D + L A Sbjct: 117 RRVLDLQRALAA 128 >gi|154500840|ref|ZP_02038878.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC 29799] gi|150270340|gb|EDM97666.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC 29799] Length = 233 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 13/135 (9%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + + A + A P +++D + Sbjct: 1 MNKPLILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVMEASSHN-PEIILLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + ++ +++ + + + I AGA+ +L KPF+ E L +R Sbjct: 60 MDGV-EVIHKVRSWSNMPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLRV-- 116 Query: 119 QMQKSKDENQFLDAI 133 + L A+ Sbjct: 117 -------TQRRLAAL 124 >gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ + F V S E KE +++D + + Sbjct: 1 MKKILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAA-KEKNYELIILDLMLPEID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R++ + + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRKI---KNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|293408805|ref|ZP_06652644.1| conserved hypothetical protein [Escherichia coli B354] gi|301025171|ref|ZP_07188744.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 69-1] gi|291471983|gb|EFF14466.1| conserved hypothetical protein [Escherichia coli B354] gi|300396171|gb|EFJ79709.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 69-1] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 236 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 73 HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131 >gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1044 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 S+L+VD R + + + G+ V EA S E E ++ P+ +++D + Sbjct: 26 RSILIVDDEPEQRIIIKKILTSAGYRVLEAESGVECTELIRRQ-QPDLVLLDVKLGDESG 84 Query: 60 LEFIAHVRQMPLGTDVFVYYLLM-EVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ ++ D + +L + ++ G RAGA+ +++KP N+E + L Sbjct: 85 LDICRQIKTDSDIADTHIMFLSGVKTSPQEQARGLRAGADGYIVKPVNKEEFLARIEALM 144 Query: 119 QMQKSKDENQ 128 ++ +++ + Sbjct: 145 RVVHTEERLK 154 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 7/80 (8%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL + ++ + + + G V A + EA + +++ + +++D M G+ Sbjct: 865 ILLAEDDNLNQLFMKKMLEKQGHNVVLANNGQEAVDLFQEQN-FDCILMDIQMPGMTGVE 923 Query: 63 -IAHVRQMPLG----TDVFV 77 +R M G ++ V Sbjct: 924 ATQRIRSMEHGAWGPSETPV 943 Score = 58.7 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 6/42 (14%), Positives = 12/42 (28%) Query: 69 MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + + + AG + ++ KP N E Sbjct: 991 QSPNPRIPIIAVTAHTQPGDRERFLEAGMDDYIGKPVNHEDF 1032 >gi|218245994|ref|YP_002371365.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|257059045|ref|YP_003136933.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] gi|218166472|gb|ACK65209.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|256589211|gb|ACV00098.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] Length = 308 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+VD ++ + + G+ A +A E K + P+ +++D M LE Sbjct: 11 ILVVDDISKNVQLLIEILDTVGYATTFAIGGKQALERV-KSVKPDLILLDLMMPEINGLE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ ++ + +L D E +I GA ++ KPF L ++ +++ Sbjct: 70 VCKILKSDEATANIPILFLTASNDKEHLIKAFEQGAVDYVTKPFKVPELLARVKTHVELK 129 Query: 122 KSKDENQ 128 + + + Q Sbjct: 130 QVQKQLQ 136 >gi|159028166|emb|CAO89773.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 9/128 (7%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------LLPNYLVIDE 54 LLL+D + + + G+ V A + EA E+ +P+ ++ D Sbjct: 9 KQLLLIDDDPNLILLVKDYLEFRGYRVTTAENGTEALAILERGANAAKAREMPDMIICDL 68 Query: 55 SMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 M + F+ +R+ + + V +L + + + G AGA+ +++KPF E L Sbjct: 69 MMPEMDGYAFLETIRRDIRFSGLPVIFLSPKGQSQDKVTGLTAGADFYMVKPFEPEELVA 128 Query: 113 AMRELPQM 120 + + Sbjct: 129 LVESSLKQ 136 >gi|160891307|ref|ZP_02072310.1| hypothetical protein BACUNI_03756 [Bacteroides uniformis ATCC 8492] gi|156859528|gb|EDO52959.1| hypothetical protein BACUNI_03756 [Bacteroides uniformis ATCC 8492] Length = 653 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ + + F+D F V A + +E KE +P+ +V D M + Sbjct: 397 LLVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKE-IPDIIVSDIMMPVMDGNE 454 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ + + + L + G + GA+S+L KPF+ L + L Q + Sbjct: 455 MCRELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLLQSR 514 Query: 122 KSKD 125 ++ Sbjct: 515 RNLA 518 >gi|149278518|ref|ZP_01884655.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] gi|149230888|gb|EDM36270.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] Length = 253 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + VR+ + + + EA E + E LP+ ++ D M + Sbjct: 4 RKILVIEDNDEVREFIKMCLEGE-YAIMEARDGKEGWQTA-AEHLPDLIISDIMMPEMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F VRQ + + V L +V E+ + G +GA+ +L KP+N + L+ + L + Sbjct: 62 NEFCKLVRQDERTSHIPVIMLTAKVALEQQLEGLESGADIYLTKPYNIQLLKSYISNLLR 121 Query: 120 MQKSKDE 126 +++ + Sbjct: 122 SKETLRQ 128 >gi|254236867|ref|ZP_04930190.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719] gi|313109414|ref|ZP_07795374.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016] gi|126168798|gb|EAZ54309.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719] gi|310881876|gb|EFQ40470.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016] Length = 795 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + I + V R + G+ V A + EA E +E P+ +++D M + F Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 727 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +P ++ V L AG + ++ KP E L+ + + Sbjct: 728 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785 >gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ ++ + G+ V A A C +E P+ +V+D + G Sbjct: 5 RRVLVVEDEPVINQAVSDRLTAEGYDVVRAWDGPGAVS-CFEETSPDLVVLDVMLPGYDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE ++ + V V L VD ++ G GA+ +L KPF L + L + Sbjct: 64 LEVCRRIQAV---RPVPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLR 120 Query: 120 MQKSKDEN 127 + E Sbjct: 121 RVERAAEL 128 >gi|302384082|ref|YP_003819905.1| Fis family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302194710|gb|ADL02282.1| two component, sigma54 specific, transcriptional regulator, Fis family [Brevundimonas subvibrioides ATCC 15264] Length = 481 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD R++ + + + G++V A S EA + K + +++D M G+ Sbjct: 3 KTVLVVDDDPTQRRLVQAVLDREGYVVVHAESGGEAIDRLTKGGGADVVLLDLVMPGMSG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A G V L E ++ +AGA F +KP + E + +R Q+ Sbjct: 63 MEALAEIRTAGVTTPVIVLTANGGIETVVKAMQAGAQDFFIKPASPERILVGIRNALQLT 122 Query: 122 KSKDENQFLD 131 + E L Sbjct: 123 QLTAEVGRLK 132 >gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+++ + + + + D F V A + + + + + +++D M G+ F Sbjct: 7 RLLVIEDTTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 123 SKDENQFL 130 S Q + Sbjct: 125 SLTTQQTI 132 >gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L+KPF + L +R L + Sbjct: 61 HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|15599169|ref|NP_252663.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1] gi|9950164|gb|AAG07361.1|AE004815_5 Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1] Length = 795 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + I + V R + G+ V A + EA E +E P+ +++D M + F Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 727 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +P ++ V L AG + ++ KP E L+ + + Sbjct: 728 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785 >gi|118579769|ref|YP_901019.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118502479|gb|ABK98961.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 319 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + +F VF ATS + E C+ P+ +++D M + Sbjct: 22 RLLIVDDEPTNIQSLYEIFRS-DHEVFIATSALQGLEMCDTNP-PDLIMLDIVMPSMNGL 79 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V ++ + E+ G AGA F++KPFN +R ++ M Sbjct: 80 EMCRQLKSDQRTRDIPVIFVTAYGNPEEETRGLEAGAVDFIMKPFNSAVVRARVQTHLTM 139 Query: 121 QKSKDENQFLDAI 133 + D + + I Sbjct: 140 KAQADLLRSMAFI 152 >gi|325279188|ref|YP_004251730.1| response regulator receiver sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] gi|324310997|gb|ADY31550.1| response regulator receiver sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] Length = 374 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD + + L G+ + A + EA E E P+ +++D M G+ F Sbjct: 9 KLLVVDDVQTNVLLLKALLGKEGYGILVANNGQEALEVIRNEN-PDLILLDVMMPGMDGF 67 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 ++ ++ + +L D + ++ G + G F+ KPF +E L ++ Sbjct: 68 EVAERLKSEEFRCEIPIIFLTALDDTQSIVNGFKLGVGDFISKPFRKEELMVRIKHQLSL 127 Query: 119 --QMQKSKDENQFL 130 + +++N+ L Sbjct: 128 VAARRIIEEKNEEL 141 >gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG] Length = 240 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L V+ ++R+ + GF V + E P+ ++D + G+ Sbjct: 12 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAG-APDIALLDVMVPGMDGV 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 71 SLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127 >gi|299769446|ref|YP_003731472.1| putative two component heavy metal response transcriptional regulator [Acinetobacter sp. DR1] gi|298699534|gb|ADI90099.1| putative two component heavy metal response transcriptional regulator [Acinetobacter sp. DR1] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ + E +++ + L++D + + Sbjct: 2 RILIIEDEIKIATYLVKGLKESGYQAECVHLGMQGLEMLKRDQY-DLLILDVMLPDIDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + V +L + + G GA+ +L KPF+ L ++ L + Sbjct: 61 SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117 Query: 121 QKSKDENQF 129 Q+ EN+ Sbjct: 118 QQYLQENEL 126 >gi|319764499|ref|YP_004128436.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826715|ref|YP_004390018.1| response regulator receiver protein [Alicycliphilus denitrificans K601] gi|317119060|gb|ADV01549.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329312087|gb|AEB86502.1| response regulator receiver protein [Alicycliphilus denitrificans K601] Length = 120 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M S+L VD S +RK+ G+ V EA +A E E + ++ D++M Sbjct: 1 MQSILAVDDSPSMRKMVSFTLTGAGYHVVEAVDGQDALEKAETHD-IDLVLADQNMPRLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R P + L E + AG AGA +L+KPF+ L ++++ Sbjct: 60 GIGLTRKLRAHPRFKSTPILILTTESSDQMKQAGRAAGATGWLVKPFDPTRLVEVIQKVI 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 246 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 52/123 (42%), Gaps = 6/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++LL++ + + GF V A + + P+ +++D + L Sbjct: 7 TVLLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAK-PDVVLLDIMLPKLSGL 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + V + L + + G + GA+ +++KPF+ + L ++ + + Sbjct: 66 EVCELIRRESV---VPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRR 122 Query: 121 QKS 123 ++ Sbjct: 123 RQL 125 >gi|257886294|ref|ZP_05665947.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257822150|gb|EEV49280.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 222 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ ++ + R + GF V A + +A + E ++ D M + Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ V + + DFE G + GA+ ++ KP + + + L + Sbjct: 60 GYDLVGSLRNARFDMPVLMITAKADFENKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119 Query: 121 QK 122 K Sbjct: 120 SK 121 >gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 60/128 (46%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ I+R++ + F ++VFEA EA E+E + + +++D + + Sbjct: 3 KIILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ ++V + L VD + + G GA+ ++ KP++ L + L + Sbjct: 62 WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 Query: 120 MQKSKDEN 127 +K + Sbjct: 119 SRKVTKQL 126 >gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115] gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115] Length = 234 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + G+ A +E+ P+ +++D + + Sbjct: 16 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKF-REVNPDLVILDLMLPVLDGLE 74 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++ + L + + + G +GA+ +L+KPF+ E L +R + Sbjct: 75 VA-RRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRR 130 >gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM 20098] gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM 20098] Length = 242 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ + G+ A A + +L P+ +++D + + Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAA-AQLRPDLVIMDIMLPVMDG 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R + V V L D + G AGA+ ++ KPF+ L + L + Sbjct: 72 LEATKRIVADRP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129 >gi|224535197|ref|ZP_03675736.1| hypothetical protein BACCELL_00058 [Bacteroides cellulosilyticus DSM 14838] gi|224523188|gb|EEF92293.1| hypothetical protein BACCELL_00058 [Bacteroides cellulosilyticus DSM 14838] Length = 1310 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + K + F + AT EA + E LP ++ D M G+ Sbjct: 1059 TILLVEDNEQILKYLAGKLAEH-FNIVTATHGEEALKLV-GEYLPEIVISDIMMPGMDGL 1116 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H+++ L D+FV L + E + G + GA+ ++ KPF+ E L + + Sbjct: 1117 TLCRHIKENSLYADIFVILLTAKTSSEDELRGYKEGADIYIKKPFDTEALINQIMNILNT 1176 Query: 121 QKSKDEN 127 ++ + E Sbjct: 1177 RQKRKEQ 1183 >gi|186475955|ref|YP_001857425.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184192414|gb|ACC70379.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 248 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD +R++ G A+ + R E P+ +V+D + G L+ Sbjct: 7 VLIVDDDRDIRELVGTYLTRNGVRATLASGGRQMRAALAAE-RPDLIVLDLMLPGESGLD 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V + L + + G GA+ +L KPF L +R + + Sbjct: 66 LCRELRAGE-FQTVPILMLTALSEETDRVVGLEMGADDYLAKPFAVRELLARIRAILRRS 124 Query: 122 KS 123 + Sbjct: 125 RM 126 >gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952] gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D + ++ + G+ +A + EA L++D M V Sbjct: 1 MK-ILVADDDKEIVELLSIYLKNEGYEPIQAYNGREALSKVRTINDIELLILDIMMPEVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + + L + I G AGA+ ++ KPFN + ++ L + Sbjct: 60 GM-QVVKILRKESQLPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSK 124 + Sbjct: 119 STMQ 122 >gi|293413973|ref|ZP_06656622.1| DNA-binding transcriptional activator KdpE [Escherichia coli B185] gi|291434031|gb|EFF07004.1| DNA-binding transcriptional activator KdpE [Escherichia coli B185] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 244 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + +R V D F V A A E ++ P +++D ++ G L Sbjct: 19 KVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELV-RQWDPEVVLLDLNIPGPDGL 77 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + +V L D + G AGA+ +L KPF+ L + + + Sbjct: 78 EVCRRLRQ---FSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRR 134 Query: 121 QK 122 + Sbjct: 135 PR 136 >gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23] gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23] gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W] gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + G+ +A S EA +++D M + Sbjct: 1 MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+++ + + + + + I G GA+ ++ KPFN + ++ L + Sbjct: 60 GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 121 QKSKDEN 127 +++ N Sbjct: 119 SQNEVTN 125 >gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 221 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ + ++ + F D G V AT E + + ++D + G+ Sbjct: 2 RILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQP-IDAAIVDIMLPGLDGR 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V L ++E G GA+ ++ KPF E L F ++ + + Sbjct: 61 ELCRRLKA---TLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRR 117 Query: 121 QKSKDENQ 128 + +Q Sbjct: 118 YQRSAASQ 125 >gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ ++V A+ AR+F + + +V+D + + Sbjct: 1 MK-ILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDV-FDYDLIVLDVMLPKLD 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G + L + + G AGA+ +L+KPF+ E L +R L Sbjct: 59 GIALCQQLRAN--GCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 256 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 13/134 (9%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF----CEKELLPN-----YLVID 53 ++L+++ ++R+ + G+ A+ EA +E P +++D Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 54 ESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 + G L+ +R+ G V + + + + G GA+ +L KPF + Sbjct: 83 VMLPGINGLDLCRLIRRQ--GCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREML 140 Query: 112 FAMRELPQMQKSKD 125 R L + + + Sbjct: 141 ARCRALLRRTRIQQ 154 >gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] Length = 244 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A + +A ++ P+ +V+D + Sbjct: 20 RVLVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAA-RDFTPDAIVLDWMLPDFDGL 78 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V +L + E +AG AG + ++ KPF+ E L +R L + Sbjct: 79 EVLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAG 138 Query: 123 SKDENQ 128 + + Sbjct: 139 ATRIEE 144 >gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1] gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 7/124 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + + + GF V++ + EA + + + + ++D + Sbjct: 1 MK-VLVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQD-IDLAILDIMLPDIS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + L + I G GA+ ++ KPF L ++ Sbjct: 59 GLEICQTIRENYNF---PIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQL 115 Query: 119 QMQK 122 + K Sbjct: 116 RRYK 119 >gi|302344896|ref|YP_003813249.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella melaninogenica ATCC 25845] gi|302149775|gb|ADK96037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella melaninogenica ATCC 25845] Length = 878 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D + +R R + ++ + V EA + E K ++P+ ++ D M + Sbjct: 637 VLIIDDNIDIRTYLRSVLSEK-YNVSEAANGKVGLELARK-IVPDIVLSDIMMPVMDGLA 694 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + + V L E+ G GA+++L KPF+ L + L Q + Sbjct: 695 FCQQLKTDKAISHIPVILLTARSLDEQRAEGYEHGADAYLSKPFSLRLLFSRIDNLIQSR 754 Query: 122 KSKDEN 127 K + Sbjct: 755 KKLSKL 760 >gi|221105902|ref|XP_002159225.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 232 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 1/125 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V R + F V A + E E +K+ + ++D M Sbjct: 4 KKILLVEDDPNFGSVLRDYLSLNDFEVTLAKNGMEGFEKFKKDTY-DLCILDVMMPYKDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +V + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 63 YTLAREIREKNAEVPIIFLTAKTLKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 122 Query: 122 KSKDE 126 S+ + Sbjct: 123 ASESK 127 >gi|86609720|ref|YP_478482.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558262|gb|ABD03219.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 364 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (10%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEA---REFCEKELLPNYLVIDESMEGV 59 + +VD +VR ++ + V S A + E+ P+ ++ D M + Sbjct: 37 RIWVVDDDPVVRCYIINVLKGSQYYVESWESARAAWDPLQSLEESEWPDMVICDWVMPEM 96 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++ G V+ L + E + G AGA+ F+ KP + E LR +R Sbjct: 97 SGVEFCCRLKGSAAGQFVYFILLTSRSEVEARVEGLDAGADEFITKPVDPEELRARVRAG 156 Query: 118 PQMQK-----------SKDENQFLDAI 133 ++Q+ + N+ L+++ Sbjct: 157 LRLQRLTQALAQANRQLRARNELLESL 183 >gi|49473740|ref|YP_031782.1| transcriptional regulator [Bartonella quintana str. Toulouse] gi|49239243|emb|CAF25563.1| Transcriptional regulator [Bartonella quintana str. Toulouse] Length = 240 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LVD + G+ V T A + P+ + D M + Sbjct: 9 QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHP-PHLAIFDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L ++ + + Sbjct: 68 M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRA 126 Query: 122 KSKDE 126 ++++ Sbjct: 127 NARNQ 131 >gi|332528620|ref|ZP_08404602.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332041936|gb|EGI78280.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 336 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + ++ G V A A + + P+ +++D M G+ F Sbjct: 17 VLIVDDVPDNLSLLHDALDESGCTVLVALDGASALQRA-AQARPDIVLLDAMMPGMDGFE 75 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + + ++ + E ++A AG ++ KP + + M Q Sbjct: 76 VARRLKADATTAHIPIIFMTGLTETEHLVAALEAGGTDYVTKPIRPKEVLARMHVHLQGA 135 Query: 122 KSKDENQ-FLDA 132 + + + + LDA Sbjct: 136 RERRQARNALDA 147 >gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + G+ V EA E E + +V+D ++ G+ Sbjct: 2 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENY-DLIVLDLNLPGMDGM 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + G AGAN ++ KPF+ + L +R L + + Sbjct: 61 ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 119 >gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+++ +RK+ R F GF VFE + E E + N +++D + + Sbjct: 2 NILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNN-INIVILDIMIPYLDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++R++ V + L + + E + G GA+ ++ KPF+ + L ++ L + Sbjct: 61 KVCKNIRELSK---VPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKR 117 >gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus PHEA-2] Length = 240 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L ++ + R+ G+ V A + +A ++ E +++++D + Sbjct: 5 KQILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYL-SEQAFDFIILDIGLPDLNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +RQ + + +L D + G GA+ + KPF+ + ++ + + Sbjct: 64 FEVCKQLRQK---SQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWR 120 Query: 120 MQKSKDE 126 + + + Sbjct: 121 RMEVQIQ 127 >gi|294012565|ref|YP_003546025.1| two-component system response regulator OmpR [Sphingobium japonicum UT26S] gi|292675895|dbj|BAI97413.1| two-component system response regulator OmpR [Sphingobium japonicum UT26S] Length = 236 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +++LV+ +R + + G+ V A+S E + + + +V+D + G + Sbjct: 5 TIILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPV-DLVVLDVMLPGTNGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +DV + ++ + I G GA+ +L KPF L +R + + Sbjct: 64 DLCRQIRRK---SDVPIIFISAKGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRR 120 Query: 121 QKSKD 125 + Sbjct: 121 VGVER 125 >gi|326201907|ref|ZP_08191777.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987702|gb|EGD48528.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + + + V++A + EA + ++ID M + Sbjct: 2 NILVCDDDKEIVDAIEIYLKNEDYCVYKAYNGAEAL-LVFDNYEIHLVIIDIMMPVMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ ++ V L + + I G GA+ ++ KPFN L ++ L + Sbjct: 61 RATMKIREKY-NIPVLMLSAKSEDTDKIIGLNMGADDYVTKPFNPLELVARVKSLLRR 117 >gi|153955231|ref|YP_001395996.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855657|ref|YP_002472779.1| hypothetical protein CKR_2314 [Clostridium kluyveri NBRC 12016] gi|146348089|gb|EDK34625.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569381|dbj|BAH07365.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + + L GF V A + +A + +ID S+ Sbjct: 1 MKRIFLVEDDKAIARNLVLLLRSEGFTVTHAPTRSDAFTAL-AGNKFDLALIDISLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++M D+ V +L D ++ G GA+ ++ KPF L +R Sbjct: 60 GFTVCTEIKEM---QDLPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELMARIRTAL 116 Query: 119 QM 120 + Sbjct: 117 RK 118 >gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + G++V A E + + +V+D + + Sbjct: 2 RILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEG-HYLGDTEPYDAVVLDIGLPQMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRAA 120 Query: 123 SKDENQF 129 ++F Sbjct: 121 GHASSEF 127 >gi|77461924|ref|YP_351431.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385927|gb|ABA77440.1| Two component Transcriptional regulator, Winged helix family [Pseudomonas fluorescens Pf0-1] Length = 246 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLEANTV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + L D I G GA+ +L KPF L + + + Sbjct: 66 LCRELRS-SKHRATPILMLTARNDETDRILGLEMGADDYLTKPFAARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium jeikeium K411] gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium jeikeium K411] Length = 240 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDE-TRRFSPDVVVLDLGLPELDGL 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 73 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 Query: 121 QK 122 + Sbjct: 130 PR 131 >gi|93006920|ref|YP_581357.1| CheA signal transduction histidine kinases [Psychrobacter cryohalolentis K5] gi|92394598|gb|ABE75873.1| CheA signal transduction histidine kinases [Psychrobacter cryohalolentis K5] Length = 2301 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD S VRKV GF V A +A E +E+ P+ +++D M + Sbjct: 2174 TTILVVDDSVTVRKVTSRFLERQGFNVVLAKDGIDALEIL-QEMTPDLMLLDIEMPRMDG 2232 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR + + + + G N ++ KPF L ++ L Sbjct: 2233 FEVATQVRHNGRLQHLPIIMITSRTGEKHRERALEIGVNDYMGKPFQENQLLDKIQSLL 2291 >gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71] gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227] Length = 253 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ ++ G+++ + + K+ +++D + G+ Sbjct: 1 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L + + G +GAN +L+KPF+ L +R + Sbjct: 59 GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 Query: 121 QKSKD 125 + + Sbjct: 118 HHALN 122 >gi|302552915|ref|ZP_07305257.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470533|gb|EFL33626.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 260 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 9/124 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ + +G+ V A + A P +++D + + Sbjct: 2 RVLLIEDDERIAGPLAEGLARYGYTVERARTGSAALAA----PEPEMVLLDLGLPDMDGL 57 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + + + + G GA+ ++ KPF L +R + + Sbjct: 58 DVCRALRRR---SDVPIIMITARGEEIDRVLGLELGADDYMAKPFGVRELVARIRAVTRR 114 Query: 121 QKSK 124 + + Sbjct: 115 TRPQ 118 >gi|218694120|ref|YP_002401787.1| DNA-binding transcriptional activator KdpE [Escherichia coli 55989] gi|218350852|emb|CAU96548.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli 55989] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|153938900|ref|YP_001390952.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934796|gb|ABS40294.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319014|gb|ADF99391.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + G VF+A +A ++ + +++D M + Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDAL-MLLEDHDIHLIIMDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|153933899|ref|YP_001383953.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937109|ref|YP_001387498.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226948941|ref|YP_002804032.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|152929943|gb|ABS35443.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933023|gb|ABS38522.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226842658|gb|ACO85324.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + G VF+A +A ++ + +++D M + Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDAL-MLLEDHDIHLIIMDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] Length = 219 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ R G++V EA E F + +V+D + + Sbjct: 2 RVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEG-HFLGDTEPYDAIVLDVGLPVMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 SVLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120 Query: 123 SKDENQF 129 ++ Sbjct: 121 GHATSEL 127 >gi|15608167|ref|NP_215543.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis H37Rv] gi|15840457|ref|NP_335494.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis CDC1551] gi|31792218|ref|NP_854711.1| transcriptional regulatory protein KdpE [Mycobacterium bovis AF2122/97] gi|121636956|ref|YP_977179.1| putative transcriptional regulatory protein kdpE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660809|ref|YP_001282332.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis H37Ra] gi|148822236|ref|YP_001286990.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis F11] gi|215402842|ref|ZP_03415023.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 02_1987] gi|215410630|ref|ZP_03419438.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 94_M4241A] gi|215426309|ref|ZP_03424228.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis T92] gi|215429888|ref|ZP_03427807.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis EAS054] gi|218752699|ref|ZP_03531495.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis GM 1503] gi|219556895|ref|ZP_03535971.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis T17] gi|224989428|ref|YP_002644115.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799943|ref|YP_003032944.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 1435] gi|254231318|ref|ZP_04924645.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis C] gi|254550012|ref|ZP_05140459.1| transcriptional regulator kdpE [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185938|ref|ZP_05763412.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A] gi|260204245|ref|ZP_05771736.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85] gi|289446608|ref|ZP_06436352.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A] gi|289555191|ref|ZP_06444401.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605] gi|289569007|ref|ZP_06449234.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17] gi|289573667|ref|ZP_06453894.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85] gi|289744763|ref|ZP_06504141.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 02_1987] gi|289749559|ref|ZP_06508937.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92] gi|289753088|ref|ZP_06512466.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis EAS054] gi|289761163|ref|ZP_06520541.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis GM 1503] gi|297633554|ref|ZP_06951334.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 4207] gi|297730539|ref|ZP_06959657.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN R506] gi|298524524|ref|ZP_07011933.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 94_M4241A] gi|306775163|ref|ZP_07413500.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001] gi|306781922|ref|ZP_07420259.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002] gi|306783723|ref|ZP_07422045.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003] gi|306788078|ref|ZP_07426400.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004] gi|306792411|ref|ZP_07430713.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005] gi|306796814|ref|ZP_07435116.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006] gi|306802700|ref|ZP_07439368.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008] gi|306806879|ref|ZP_07443547.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007] gi|306967079|ref|ZP_07479740.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009] gi|306971270|ref|ZP_07483931.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010] gi|307078999|ref|ZP_07488169.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011] gi|307083559|ref|ZP_07492672.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012] gi|313657868|ref|ZP_07814748.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN V2475] gi|1870001|emb|CAB06852.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium tuberculosis H37Rv] gi|13880629|gb|AAK45308.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis CDC1551] gi|31617806|emb|CAD93915.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium bovis AF2122/97] gi|121492603|emb|CAL71071.1| Probable transcriptional regulatory protein kdpE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600377|gb|EAY59387.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis C] gi|148504961|gb|ABQ72770.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis H37Ra] gi|148720763|gb|ABR05388.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis F11] gi|224772541|dbj|BAH25347.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321446|gb|ACT26049.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 1435] gi|289419566|gb|EFD16767.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A] gi|289439823|gb|EFD22316.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605] gi|289538098|gb|EFD42676.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85] gi|289542761|gb|EFD46409.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17] gi|289685291|gb|EFD52779.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 02_1987] gi|289690146|gb|EFD57575.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92] gi|289693675|gb|EFD61104.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis EAS054] gi|289708669|gb|EFD72685.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis GM 1503] gi|298494318|gb|EFI29612.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 94_M4241A] gi|308216312|gb|EFO75711.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001] gi|308325376|gb|EFP14227.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002] gi|308331505|gb|EFP20356.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003] gi|308335311|gb|EFP24162.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004] gi|308339119|gb|EFP27970.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005] gi|308342791|gb|EFP31642.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006] gi|308346700|gb|EFP35551.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007] gi|308350615|gb|EFP39466.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008] gi|308355248|gb|EFP44099.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009] gi|308359203|gb|EFP48054.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010] gi|308363105|gb|EFP51956.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011] gi|308366769|gb|EFP55620.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012] gi|323720527|gb|EGB29609.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CDC1551A] gi|328459686|gb|AEB05109.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 4207] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + + R G+ V A++ A E P+ +++D + + Sbjct: 1 MTLVLVIDDEPQILRALRINLTVRGYQVITASTGAGAL-RAAAEHPPDVVILDLGLPDMS 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I + + V L D + AGA+ ++ KPF + +R + Sbjct: 60 G-IDVLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRR 118 Query: 121 QKSKDENQF 129 + E + Sbjct: 119 NTAAAELEQ 127 >gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 1205 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + ++ G V +A A E K + +++D M + Sbjct: 1085 KKILLVDDDMRNVFALSKILSEKGMNVLKAEDGNSALELLSKNEDVDLVLMDIMMPEMDG 1144 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R++ ++ + L + AGAN ++ KP + E L MR Sbjct: 1145 YETMKKIREISKYKNLTIIALTAKAMQNDRQKCIEAGANDYIPKPVDVERLFSLMRVWL 1203 Score = 78.7 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 9/125 (7%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ V N+ GF A + + ++ P+ +++D + G+ Sbjct: 817 KVLLVIEDDLKFASVLIKQANEKGFKCISAATGEDGL-ILTRKYKPHAIILDLDLPGIKG 875 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRE 116 + ++ + V+ + E + R GA + KP +++ L + Sbjct: 876 QTVLNELKADQSIRHIPVHIVSAN---EYSLELIRGGAVEHIRKPIHKKELDEAFNRIEN 932 Query: 117 LPQMQ 121 + Sbjct: 933 FINRK 937 Score = 67.1 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +LL+++ RK+ L + FEA S EA E + +V+D + + Sbjct: 938 MKNLLIIEDDFNSRKMMLKLIGNGDVKCFEADSGKEAL-RVYAENHFDCIVLDIGLPDMS 996 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLME--VDFEKMI 90 E I + ++ G + + E Sbjct: 997 GFELIQEMEKIKNGRIPPIVIYTGKELTKEEDKE 1030 >gi|293397258|ref|ZP_06641530.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582] gi|291420176|gb|EFE93433.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R+ R G VFE+ ++ P+ +++D + Sbjct: 6 TNILIVEDEKEIRRFVRTALESEGLRVFESETLQRGLIEAGT-RKPDLIILDLGLPDGDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + V L E ++ AGA+ +L KPF L +R + Sbjct: 65 L-SFIRDLRQWSAIPVIVLSARNAEEDKVSALDAGADDYLSKPFGIGELLARVRVALRRH 123 Query: 122 KSKDENQFL 130 S + L Sbjct: 124 ASSQQENPL 132 >gi|255281730|ref|ZP_05346285.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] gi|255267797|gb|EET61002.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] Length = 234 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + ++ + + G+ + ++ RE E P+ +++D ++ Sbjct: 1 MTQIFFIEDDEALAEGISFALEREGYQISCFSTCRAGREAI-AERQPDLVLLDWNLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A R++ V V + + +GA+ ++ KPF+ L+ + L + Sbjct: 60 GL-ALCREIAGTAGVPVLMITARDMEIDQVMCLESGADDYIAKPFSLAVLKARIAALLRR 118 Query: 121 QKSKD 125 + +D Sbjct: 119 RGGQD 123 >gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 235 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + K G+ V A EA +E +P+ ++D M G Sbjct: 16 RVLVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKA-RESMPHVCILDVMMPGPDGF 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ M +V V L + + G GA+ +++KPF+ E L + + Sbjct: 75 EVCRMLKSMG---NVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHARVRN 131 Query: 121 Q 121 Q Sbjct: 132 Q 132 >gi|189462824|ref|ZP_03011609.1| hypothetical protein BACCOP_03522 [Bacteroides coprocola DSM 17136] gi|189430440|gb|EDU99424.1| hypothetical protein BACCOP_03522 [Bacteroides coprocola DSM 17136] Length = 1486 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 4/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++LL++ + +R R +F+ F + EA + E E K +P+ ++ D M Sbjct: 1226 KTMLLIEDNLELRFFLRSIFSQR-FRIIEAANGVEGLEKAIK-YVPDIIISDIMMPEKDG 1283 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + + +R+ + + + L + D + + GA+S++ KPF+ L + L Sbjct: 1284 ITLVKELREELTTSHIPIVLLTAKTDMDTKLQSLELGADSYITKPFSATYLEARVDNLLA 1343 Query: 120 MQKSKDE 126 ++ + Sbjct: 1344 RRQKLRQ 1350 >gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 2198 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 L+VD + + V A + E E + +++D M + Sbjct: 2078 KKALIVDDDVRNIFALTSMLERYQIQVLYAENGREGINVLENTPDIDVVLMDVMMPEMDG 2137 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +RQ + + L + AGA+ ++ KP + E L +R Sbjct: 2138 YETTSLIRQNEQFKSLPIIALTAKAMQGDREKCIEAGASDYITKPVDTEQLLSLLRVWLY 2197 Query: 120 M 120 Sbjct: 2198 R 2198 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 9/123 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+V+ ++ + GF V A + ++ P+ +++D M + Sbjct: 1812 LLIVEDDVNFARILIDMAQQHGFKVITAQNGSTGLALA-QQFYPSAVLLDIRMPEMDGWT 1870 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 + ++ P + V+ + + E + GA ++L KP + E + ++ Sbjct: 1871 VLDRLKHDPNTRHIPVHIMTV---EEGQQRSLQLGAIAYLQKPLSSEIISEALVKIKGFV 1927 Query: 119 QMQ 121 + Q Sbjct: 1928 ERQ 1930 Score = 74.8 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +LL+V+ R L + + EA E + + LV+D + + Sbjct: 1932 KNLLVVEDDDTQRHSIVELIGNSDVHTTAVATGAEALEAIRTKH-FDCLVLDLGLPDMTG 1990 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E I ++ +P G + + + R A + ++K + E L Sbjct: 1991 FELIEQIKLLPHGKTLPIIVYTGRDISKAQETELRRIAETIIIKDVRSPERLLD 2044 >gi|307328135|ref|ZP_07607315.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306886254|gb|EFN17260.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 257 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 LLLV+ ++R R +GF VF A E +E P+ L++D + + Sbjct: 22 LLLVEDDKVIRNTVRMALERYGFTVFTAGDGLTGLEIF-REKQPDLLLLDVMLPELDGIG 80 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR+ L + + D +++G AGA+ +++KP L +R L + Sbjct: 81 LCRRVREFSL---APILMMSARGDALDVVSGLEAGADDYVIKPCESAVLVARIRSLLRR 136 >gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + + + + +A +A E + +++D + + Sbjct: 5 KILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKY--DNTFQLIILDLMLPYIDG- 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R++ + V V L + + + G GA+ +++KPF+ L ++ + Sbjct: 62 IEVLRKIRENSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRR 119 >gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + V G+ V A + + +++D + G+ + Sbjct: 2 RLLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPY-DVIILDIMLPGMNGY 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + L + G GA+ +L KPF+ L+ +R L + Sbjct: 61 QVCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRR 118 >gi|256828716|ref|YP_003157444.1| response regulator receiver sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577892|gb|ACU89028.1| response regulator receiver sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 544 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R + GF + +A + E + + P+ L++D M + Sbjct: 10 TTVLVVDDDPFIRATTGASLSSRGFTILQAGNGQEGLDMFQAHG-PDLLIVDLKMPVMNG 68 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELPQM 120 R + V + E ++ + R GA +L+KP + L A+ + + Sbjct: 69 LELLSRLSGVTPHTPVLVVSGEGGLDEAVEALRLGAWDYLVKPIVSPTVLLHAVDKALER 128 Query: 121 QKSKDENQ 128 EN+ Sbjct: 129 AALIRENE 136 Score = 49.0 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 6/118 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVI-DESMEGVL 60 +L+++S VR G+ +++ SV E ++E + + ++ D + + Sbjct: 424 RILVIESHPEVRTTISSCLTKLGYQIWQTDSVAHGCELVQEEPMRFDLILTEDGPLNSLD 483 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A + + + ++ A + KP + TL A+ Sbjct: 484 MLCAT--AQKVNPALRIMLATA-SPLGNIVCSHHA-VCRIISKPVDMVTLGQALHHCL 537 >gi|226314402|ref|YP_002774298.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097352|dbj|BAH45794.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 459 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 2/133 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD R + G+ EA+ A + + +++D M G+ Sbjct: 5 TRILIVDDEADFRHLLTSRLKRKGYTTLEASDGISA-QKLVTSETIHVILLDLKMPGMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + E I + GA +L KP+N L + + + Q Sbjct: 64 LSFLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVEKQ 123 Query: 122 KSKDENQFL-DAI 133 + +ENQ L +A+ Sbjct: 124 QLTEENQQLREAL 136 >gi|253699596|ref|YP_003020785.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251774446|gb|ACT17027.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 458 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R + D G+ A EA C +E LP +++D M + Sbjct: 4 TILIVDDEEGIRSSLAGILEDEGYRTVCAADGVEALALCARE-LPGLVLLDIWMPKMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V + E + + GA F+ KP + E + + M + Sbjct: 63 QTLQRLKESHPFLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALAMNR 122 Query: 123 SKDENQFL 130 K+EN L Sbjct: 123 LKEENAAL 130 >gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D +R + G+ V A + EA E P+ LV D M Sbjct: 5 ILIADDDPGIRLAVKDYLELSGYSVITAQNGQEALSLLET-YRPHLLVSDIKMPQKDGYT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + H+RQ+P + V +L E+ I G G + +L KPF + L+ +R L + Sbjct: 64 LVRHLRQLPEFRLLPVVFLTERGTKEERIQGYEVGCDVYLPKPFEMDELKAVIRNLVEKT 123 Query: 122 K 122 + Sbjct: 124 Q 124 >gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC 29799] gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC 29799] Length = 227 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L V+ + ++ G+ V A +V EA + L++D ++ Sbjct: 1 MQKILYVEDDLSLIDGLQYTLESSGYAVDNARTVKEALSLFRSNHY-DLLLLDVTLPDGT 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR + + + +L ++ G G + ++ KPF L ++ L Sbjct: 60 GFDVCKEVRSS---STIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|309792432|ref|ZP_07686898.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308225542|gb|EFO79304.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 977 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ ++R+V + + G+ V + S EA + + + P+ +++D + G+ Sbjct: 7 ILIVEDDPLIRRVYHDVLANSGYRVSLSASGEEALAYLQL-ITPDIILLDLGLPGIDGNE 65 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+ + V L + D +A AGA+ FL+KP + L +R + ++Q Sbjct: 66 VTRQVKADRSKPFIPVMILSAQADLATSVASLDAGADDFLVKPVEIDALLARVRAMLRLQ 125 Query: 122 KSKD 125 +++ Sbjct: 126 RAQR 129 >gi|296447289|ref|ZP_06889217.1| response regulator receiver modulated diguanylate cyclase [Methylosinus trichosporium OB3b] gi|296255154|gb|EFH02253.1| response regulator receiver modulated diguanylate cyclase [Methylosinus trichosporium OB3b] Length = 455 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ F V AT+ +A C ++ + +++D M G+ F Sbjct: 4 RILIVDDLAANVKLLEARLTAEYFDVLSATNGTDALRLC-RDDRCDIVLLDAMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ P + V + + G AGA+ FL KP + L +R L ++ Sbjct: 63 EVCSRLKADPATAHLPVIMVTALDQPSDRVRGLDAGADDFLTKPVDEVALLARVRSLARL 122 Query: 121 QKSKDENQ 128 + DE + Sbjct: 123 KMMLDELR 130 Score = 86.0 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61 +LL++ + V EA E + +D S L Sbjct: 156 RILLIEDRAASAERIVSALRGL-HEVTIEADPQEALFRAAEGGFDMAAVSLDLSDFDALR 214 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + + D ++++ G G N ++++P +R L +R + + Sbjct: 215 LCSQMRSLERTRALPILIIADLDDRQRILRGLDLGVNDYIVRPIDRNELVARVRSQLRRK 274 Query: 122 KSKDENQ 128 + D + Sbjct: 275 RYADSLR 281 >gi|291560855|emb|CBL39655.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 203 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L++D ++ K + +D + V A S +A K ++P+ +++D M + Sbjct: 6 ILIIDDDLMLLKTAEEILSDQ-YNVSVAKSGIQALNLLNKNIIPDLILLDIDMPQMDGYE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++++ + + +L + + + G +AGA +++KPF +E L + + Sbjct: 65 TLEEIKKISGCELIPIIFLTGFSEMDYEVRGLKAGAVDYIVKPFAKEILLARVERHLERY 124 Query: 122 KSKDENQFLD 131 + + + ++ Sbjct: 125 QQRQHKKSME 134 >gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 240 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDE-TRRFSPDVVVLDLGLPELDGL 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 73 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 Query: 121 QK 122 + Sbjct: 130 PR 131 >gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11] gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11] Length = 1126 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 LL+ D + +V G+ V A E + E+E ++D M G+ E Sbjct: 721 LLVADDEPVNLQVLTSFLKLEGYRVKVANDGPETLKVFEEEKPELL-LLDVMMPGMSGYE 779 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ + + + L + I G +GAN +L KPFN++ L ++ + Sbjct: 780 VCQSLRETYSHSQLPIIMLTALNQTQDRIRGFESGANDYLSKPFNKQELAARIKAHLKAS 839 Query: 122 KSK---DENQFLD 131 K++ EN L Sbjct: 840 KAELFLSENDRLQ 852 >gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 1155 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD G +V + EA E E+ + +++D M + Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ P + + + + + +AGAN +L KP + + L +R Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1149 Score = 85.6 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+++ ++ L ++ G+ A E + +P+ +++D + L Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFALA-AQYIPDAILLDMRLPDHSGLT 823 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117 + ++++ + V+ + E + GA + +KP +RE L+ L Sbjct: 824 VLQRLKELAATRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876 Score = 47.9 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 3/85 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + R+ L D + + +E + + ++ID + +L Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVALAQD-ALALLRENIYDCMIIDLKLPDMLG 943 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEV 84 + + + + V Sbjct: 944 NELLKRMTAEDIRSFPPVIVYTGRN 968 >gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104] gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104] Length = 222 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLV+ + GF+V + + E + +++D + G Sbjct: 2 RVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEA-TENPFDVVILDIMLPGRSGY 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R + V L + GA+ +L KPF+ L +R L + Sbjct: 61 EVLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118 >gi|114797095|ref|YP_760220.1| putative diguanylate cyclase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114737269|gb|ABI75394.1| putative diguanylate cyclase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 313 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 6/135 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+VD ++ + D + V A S +A E +EL P+ +++D M Sbjct: 1 MTRATILVVDDEISNIEIINAILEDQ-YEVCFAISGAQALETM-RELQPDLVLLDVLMPE 58 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F ++ P D+ V + D + G GA ++ KP LR + Sbjct: 59 MDGFEVCKRIKNDPDLVDIPVIFTTGLGDTADEMRGLSLGAIDYVTKPIQPAILRARVTN 118 Query: 117 LPQMQKSKDENQFLD 131 +++ +D+ L Sbjct: 119 HMELKSLRDQLANLA 133 >gi|86610149|ref|YP_478911.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558691|gb|ABD03648.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 5/123 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLV+ ++ + + G +V A A + +E + L++D + G + Sbjct: 2 RILLVEDDPEQLELLQAALSKCGHVVDCAKEGEMA-AWLMEEKAYDLLILDWMLPGPSGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + RQ V L + ++ G AGA+ +L+KP + L +R L + Sbjct: 61 QLCRQYRQSGGCA--PVLMLTAKDATSDVVQGLDAGADDYLVKPVDLVELLARVRALGRR 118 Query: 121 QKS 123 Sbjct: 119 SHQ 121 >gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + R + V A E + VID + + Sbjct: 2 RILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHL-TEYPLDLAVIDLGLPKMNGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R ++ + L ++ + G AGA+ +L KPF+ E L L + Sbjct: 61 EVIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSA 120 Query: 123 SKDENQFLD 131 + + + Sbjct: 121 GQANPEMIA 129 >gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ + + K+ + V A ++ + +++D M L Sbjct: 2 RILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYL-AGAEYDVVILDIMMPKKDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ V V L + E + G AGAN +L+KPF E L +R L + Sbjct: 61 SVLREIRQ--KNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118 Query: 121 QKSKD 125 + + Sbjct: 119 PEKSE 123 >gi|308070736|ref|YP_003872341.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305860015|gb|ADM71803.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 1239 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + V A + EA E E+ + +++D M + Sbjct: 1119 KKILLVDDDIRNVFALSSVLESYRMEVTFAENGREALELLEQTPDFDLVLMDMMMPEMDG 1178 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R MP + + L + + AGA+ ++ KP E L MR Sbjct: 1179 YEAMRRIRLMPQFEKMPIIALTAKAMKDDRSKCIEAGASDYVKKPIQTEQLLSLMRVWL 1237 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 6/111 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+++ + + GF A + + LP+ +++D + + Sbjct: 851 KVLLIIEDDINFANILYDMARSRGFKALVALQGDDGLNMAQS-YLPDAIILDIQLPVMDG 909 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + ++ + V+ + + + + G GA ++L KP ++E+L Sbjct: 910 WSILGELKGNSSTRHIPVHVISV---IDDVKQGLMMGAIAYLKKPSSKESL 957 Score = 73.7 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ RK L + + ++ EA + + +V+D + + Sbjct: 973 KRLLVVEDDDNQRKSIIELIDHDDVAITAVSTGQEALNELAIQRY-DCMVLDLMLSDMTG 1031 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + +R+ D+ + + K R A S ++K + E L Sbjct: 1032 FELLDRIRENEQLADLPIIIYTGKDLDSKEETQLRKYAESIIIKDVKSPERLLD 1085 >gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 950 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 692 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 749 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D + GAN+++ KPF++E L + +L Sbjct: 750 EMLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 809 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 810 RKLFRERIRQQMENQ 824 >gi|224535938|ref|ZP_03676477.1| hypothetical protein BACCELL_00802 [Bacteroides cellulosilyticus DSM 14838] gi|224522448|gb|EEF91553.1| hypothetical protein BACCELL_00802 [Bacteroides cellulosilyticus DSM 14838] Length = 1345 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK F + E+T+ EA ++ P+ ++ D M+ + Sbjct: 1086 KVLIVDDDEEIRKYICRELAS-DFHMMESTNGREALSIVLRQT-PDLVISDIMMQEMDGL 1143 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + E + G GA+++++KPFN + LR + + + Sbjct: 1144 TLCHKIKQNVNINHIPVILLTAKTREEDNMEGLDMGADAYIIKPFNIDILRKTVINIVKG 1203 Query: 121 QKSKD 125 ++ Sbjct: 1204 REMLR 1208 >gi|161522839|ref|YP_001585768.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348324|ref|YP_001941520.1| two-component system aerobic respiration control protein [Burkholderia multivorans ATCC 17616] gi|160346392|gb|ABX19476.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189338462|dbj|BAG47530.1| two-component system aerobic respiration control protein [Burkholderia multivorans ATCC 17616] Length = 253 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R++ +D V A + + + +++D M G Sbjct: 9 VLVVDDDPAIRELLSGYLSDNDIRVTVAACGQD-MAQALESFAIDLVILDLRMPGEDGV- 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R++ +++ ++ + + D + GA+ +L KPF+ L +R L + + Sbjct: 67 QIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126 Query: 124 KD 125 Sbjct: 127 TA 128 >gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 235 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + R + G+ V +A E+ + +V+D + G+ F Sbjct: 2 RVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQA-GEISYDAIVLDLMLPGLDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L D + I G AGA+ +L KPF+ L +R L + Sbjct: 61 EVCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRR 118 >gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G++V +A E + + +++D + + Sbjct: 2 RILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEG-HYLGDAEPYDAVILDIGLPEMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRR 118 >gi|332291060|ref|YP_004429669.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] gi|332169146|gb|AEE18401.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] Length = 236 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLKDYLMMNDYNVTHAKNGMEGFEKFKKDDY-DLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F D+ + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNEDIPIIFLTAKALKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124 >gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+++ + ++ + + G+ A ++ ++ + +++D + ++ Sbjct: 3 ILIIEDESRIAQLLQRGLEELGYKTTVAYDGILGKKLVWQQAY-DLIIMDIILPKINGID 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ + L + + G AGA+ +L+KPF+ L +R L + Sbjct: 62 LCREIK--ESYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLLKR 118 >gi|297569164|ref|YP_003690508.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus AHT2] gi|296925079|gb|ADH85889.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfurivibrio alkaliphilus AHT2] Length = 505 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + G+ V A + A E E E P+ +V D M + Sbjct: 6 RKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESE-APDLVVTDIRMPEMDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + V + E + + GA ++LKPF E + ++++ + Q Sbjct: 65 IAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVMRQQ 124 >gi|317053550|ref|YP_004118684.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] gi|316952655|gb|ADU72128.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 230 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 + +++ V + V A E ++ L P+ +++D + G+ Sbjct: 4 KRIQIIEDDADAADVLGAYLRRENYDVSMAHDGPSGLEMSQR-LRPDLILLDVMLPGMNG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + V + D I R GA+ +++KP+N + ++ + + Sbjct: 63 -TEILAAVRRKGNTPVIMVTAMGDLPDKIGALRYGADDYVVKPYNPGEVVARVQAVLRRA 121 Query: 122 KSKDENQFL 130 + E Q L Sbjct: 122 SQEPEVQSL 130 >gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + G++V + E + + +++D + G Sbjct: 1 MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSY-DLILLDLMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + L + G +GA+ +L KPF E L MR + Sbjct: 60 GLEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116 Query: 119 QMQKSKDE 126 + +++ ++ Sbjct: 117 RREENTEQ 124 >gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL++ +R G+ V +A E F +E + +++D + + Sbjct: 2 RLLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGL-FLAREYPVDLVIVDLGLPKLNGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + + L ++ + G AGA+ +L+KPF L ++ L + Sbjct: 61 TIVQRLRQEGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRR 118 >gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei Ss046] Length = 280 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ ++ G+++ + + K+ +++D + G+ Sbjct: 58 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 115 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L + + G +GAN +L+KPF+ L +R + Sbjct: 116 GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 174 Query: 121 QKSKD 125 + + Sbjct: 175 HHALN 179 >gi|295093611|emb|CBK82702.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+V+ I+ + G+ V A S EA E + +++D ++ Sbjct: 1 MKRILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCL--EHGFDLILLDRNLPDGR 58 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L++ +R+ V + +L MI G RAG + ++ KPF+ E L + + Sbjct: 59 GLDYCRELRKSTK---VPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVL 115 Query: 119 QMQKS 123 + ++ Sbjct: 116 RRSEN 120 >gi|270293521|ref|ZP_06199723.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274988|gb|EFA20848.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 875 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + +R + L F V +A E K +P+ ++ D M G+ Sbjct: 629 TVLVIDDNADIRNYVKSLLTQE-FRVLDAADGTEGIRLAMK-YVPDVVISDVMMPGMDGV 686 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G GA+S++ KPFN + L +R L Sbjct: 687 ECCRRLKGELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFNSQLLLSRVRNLIAN 746 Query: 121 QKSKDE 126 ++ + Sbjct: 747 RRQLRQ 752 >gi|260219834|emb|CBA26763.1| hypothetical protein Csp_G38260 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 359 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V ++ G+ V ATS A + LP+ +++D M G+ F Sbjct: 53 VLIVDDVPDNLSVLHDALDESGYTVLIATSGEAALMRAMQA-LPDVILLDAMMPGMDGFE 111 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P T + + ++ + E ++A +G ++ KP + + M Sbjct: 112 VARRLKAAPQTTHIPIIFMTGLTETEYLVAALESGGVDYVTKPIKPKEVLARMGVHLAGA 171 Query: 122 KSKDENQ-FLDA 132 + + + + LDA Sbjct: 172 RERRQTRNALDA 183 >gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + GF+ A +E P+ +++D + G+ Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAF-RENRPDIVLLDLMLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + + V + L + D ++ G +GA+ +++KPF + L MR + Sbjct: 60 SGIDVA-RAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 1346 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLL + + + +KV + G+ +A E + + +++D M + F Sbjct: 1224 LLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAVEAALRGGY-DAILMDVHMPVMDGFE 1282 Query: 63 -IAHVRQMP--LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A +R+ G + + + AG + ++ KPF ++ L+ + Q Sbjct: 1283 ATAQIREREAERGRHTPIIAMTANALRGERERCLEAGMDDYIAKPFKKDELKAVLERWIQ 1342 Query: 120 MQKS 123 ++ Sbjct: 1343 KAEA 1346 Score = 86.4 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 9/128 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF----CEKELLPNYLVIDESMEG 58 +L+VD + R++ R + + A S EA E + ++D M Sbjct: 1061 RVLIVDDNEANREILRRQTLGWDMVPTLARSGPEALEMMRAAARQGHPFELAILDMMMPE 1120 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR--AGANSFLLKPFNRETLRFAM 114 + ++Q P D + L + + A + L KP + L + Sbjct: 1121 MDGIMLAREIKQDPSLADTPLILLSSYLFTREDHRAMDETLFA-AVLSKPTRQSYLFNTL 1179 Query: 115 RELPQMQK 122 + Q + Sbjct: 1180 VRVLQESR 1187 >gi|256393335|ref|YP_003114899.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359561|gb|ACU73058.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 241 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ ++ R G+ A A E + P+ +V+D + G Sbjct: 5 ILIVEDDPKQAELIRVSLQSEGYRTAIAHDAPSAFRSVE-DCPPDLVVLDLMLPGADGLT 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V + + ++AG GA+ ++ KP++ L +R + + Sbjct: 64 ICRWLRRRGE---TPVLMVTARSTEDDVLAGLDVGADDYMTKPYSPRELVARIRTVLRRS 120 Query: 122 K 122 + Sbjct: 121 R 121 >gi|148379575|ref|YP_001254116.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148289059|emb|CAL83149.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 230 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + G VF+A +A ++ + +++D M + Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDAL-MLLEDHDIHLIIMDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 NATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|189425217|ref|YP_001952394.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] gi|189421476|gb|ACD95874.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter lovleyi SZ] Length = 453 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 3/134 (2%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L++D +R + + G+ A EA +Y++ D M Sbjct: 1 MKQPHILIIDDEENLRHMLSVMLRKQGYHADTAAGGEEALAKLSGHAY-DYILCDIRMPE 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + G + + + +A + GA F+ KPF R+ + +++ Sbjct: 60 MDGREFLRQAVSSGVTAPIVMMTAYGAVDTAVACMQEGAYDFISKPFKRDEIVIVLKKAE 119 Query: 119 QMQKSKDENQFLDA 132 + ++ K+EN+ L A Sbjct: 120 ERERLKEENRTLRA 133 >gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ V + + F V A + E E + +++D + Sbjct: 1 MK-ILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHY-DLILMDIMLPKKD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V L + E ++AG +G++ +L KPF L ++ L + Sbjct: 59 GLTVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRR 118 >gi|120598873|ref|YP_963447.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146293039|ref|YP_001183463.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120558966|gb|ABM24893.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145564729|gb|ABP75664.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 236 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 4/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + R G V AT+ + + +++D M + Sbjct: 11 MSKILLVDDDPLFRTWLADALIAHGHEVECATNGLDGLNRIRAG-FADVIMLDLVMPQMN 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ V L + I G GA+ FL KPF+ + L + L + Sbjct: 70 GF-EVLKARE--CSTPVMMLSARDSEDDRIMGYELGADDFLSKPFSIKELIVRLGALERR 126 Query: 121 QKSKDENQ 128 S Q Sbjct: 127 LHSHRIMQ 134 >gi|125973056|ref|YP_001036966.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125713281|gb|ABN51773.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] Length = 223 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + D GF V A EA +K + L++D S++ Sbjct: 1 MPKILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKY-DLLLVDISLKDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + R+ D+ V +L D ++ G GA+ +++KPF L +R+ Sbjct: 60 GFAVCSAAREN---NDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKAL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|319898247|ref|YP_004158340.1| transcriptional regulator BatR [Bartonella clarridgeiae 73] gi|319402211|emb|CBI75742.1| transcriptional regulator BatR [Bartonella clarridgeiae 73] Length = 240 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LVD + G+ V T A + P+ + D M + Sbjct: 9 QTIVLVDDDSNILTSLSFALETEGYRVESYTDGSAALKNLTVNP-PHLAIFDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L ++ + + Sbjct: 68 M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRS 126 Query: 122 KSKDE 126 ++++ Sbjct: 127 NARNQ 131 >gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 43/129 (33%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL++ V G+ V + +K + LV+D + + Sbjct: 2 RILLIEDDISVADYIGKGLRQSGYSVEHCADGEQGLALAQKSEEYDVLVVDRMLPNMDGL 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 V L + + + G +AG + +L+KPF L + L + QK Sbjct: 62 TIIQTLRAADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQK 121 Query: 123 SKDENQFLD 131 S L Sbjct: 122 SSTSETKLK 130 >gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 349 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 8/137 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD V ++ G+ V ATS A ++ +P+ +++D M G+ F Sbjct: 27 VLIVDDVPDNLSVLHDALDESGYTVLVATSGEAALNRA-RQAVPDIVLLDAMMPGMDGFE 85 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 ++ M + + ++ + E ++A AG ++ KP + + M Q Sbjct: 86 VAKRLKAMAETAHIPIIFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVMARMGVHLQGA 145 Query: 120 ---MQKSKDENQFLDAI 133 Q+++ Q +A+ Sbjct: 146 RRARQEARQAGQARNAL 162 >gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + + + + + E E + +++D + Sbjct: 1 MSRILIIEDEKNLSRFVELELQHEEYETEVCKNGRQGLELALDEDW-DAILLDLMLPELN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ VRQ+ + + + ++G GA+ +++KPF E L +R + Sbjct: 60 GLDICRRVRQV---KNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116 Query: 119 QMQKSKDEN 127 + + ++E Sbjct: 117 RRVELENEQ 125 >gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + + + G+ V A + +A P+ +++D + G+ Sbjct: 1 MRARILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALALAANN--PDLIILDIMLPGI 58 Query: 60 LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109 +R +D+ + L D + G GA+ +L+KPF E Sbjct: 59 DGLAVCRQIRSN---SDIPILMLTARDDTADRVLGLDTGADDYLVKPFALEE 107 >gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R++ + GF V A + + +V+D + G+ + Sbjct: 2 RILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALA-RGTEYAAIVLDVMLPGLSGY 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + L + G GA+ +L KPF+ L +R L + Sbjct: 61 QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRR 118 >gi|288940436|ref|YP_003442676.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895808|gb|ADC61644.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 729 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ I +++ R + D G V A EA E +++D M + Sbjct: 606 RRVLLVEDEPINQEIAREMLKDVGLCVDTADDGREAV-RLSAERDYALILMDMQMPNMDG 664 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ P G + + + V E AG + FL KP ETL + Sbjct: 665 LEATRCIRQTPRGARIPIVAMTANVFAEDREHCLEAGMDDFLAKPVMPETLYGVVERWL 723 >gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + + G+ V + E E + +++D + G Sbjct: 1 MHHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAI-EKNYDIILLDLMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R + + L + G +GA+ +L KPF E L +R + Sbjct: 60 GMEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIF 116 Query: 119 QMQKSKD 125 + ++ ++ Sbjct: 117 RREQKEE 123 >gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353] gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353] Length = 236 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + + + G+ V +A+ + + ++ L++D M G+ Sbjct: 6 SILVVDDDKEIADLVEIYLVNDGYQVLKASDGEQCLQTLKEHPEVRMLILDIMMPGIDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +++ + L + + I G GA+ +L KPF+ L ++ + Sbjct: 66 EVCREIRK---TSNIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKR 122 >gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM 14838] gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM 14838] Length = 1474 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLLV+ + + ++ + D F + A + E + P+ +V D+ M + Sbjct: 1216 NLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1273 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 + +R+ + + V L + D GAN+++ KPF++E L + +L Sbjct: 1274 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLSE 1333 Query: 119 -----QMQKSKDENQ 128 + + + ENQ Sbjct: 1334 RLLFRERIRLQMENQ 1348 >gi|239817396|ref|YP_002946306.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803973|gb|ACS21040.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 247 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V + R E+ + +++D + G Sbjct: 9 ILIVDDDREIRELLTTYLVKNGLRVVAVPTGRHMRAALEESGPFDLIILDLMLPGEDGLT 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + L + I G GA+ +L KPF+ L +R + + Sbjct: 69 LCRDLRT-GKYKATPILMLTARSEEADRILGLEMGADDYLAKPFSARELLARLRAVMRRT 127 Query: 122 KSKDEN 127 + N Sbjct: 128 RMLPPN 133 >gi|229916205|ref|YP_002884851.1| response regulator receiver modulated serine phosphatase [Exiguobacterium sp. AT1b] gi|229467634|gb|ACQ69406.1| response regulator receiver modulated serine phosphatase [Exiguobacterium sp. AT1b] Length = 370 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 5/134 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC---EKELLPNYLVIDESMEG-- 58 +L+VD + V L + + +S EA + + L + +++D M G Sbjct: 3 ILIVDDEPVNTLVLEQLLHQHDYETVSVSSGEEALDLLMAPQAASLYDLVLLDVEMPGIS 62 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +RQM ++ V + + +++ G A A+ + KP L +R Sbjct: 63 GIETCKRIRQMADFEELPVIMVSGRTEEKQIAEGLDAEASDYTTKPIKITELLARIRSAL 122 Query: 119 QMQKSKDENQFLDA 132 + + + DE + +A Sbjct: 123 RYKAAVDERKIYEA 136 >gi|298250454|ref|ZP_06974258.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297548458|gb|EFH82325.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L V+ + + + + V + +L + +++D + Sbjct: 1 MK-ILYVEDEKYMARAIAQVLKKNNYSVDVCYDGESGLDMALTDLY-DIIILDILLPQKD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + +R+ G + V L + D E + G +GA+ +L KPF E L +R L Sbjct: 59 GISVLRELRR--KGRETPVILLTAKGDLEDKVEGLDSGADDYLPKPFQAEELLARLRALG 116 Query: 119 QMQKS 123 + + Sbjct: 117 RRKGQ 121 >gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 240 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + ++ GF +A + +A + + P+ +V+D + L Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + I+G GA+ ++ KPF+ L + + + Sbjct: 73 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRR 129 Query: 121 QK 122 + Sbjct: 130 PR 131 >gi|281206421|gb|EFA80608.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1197 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+V+ + + + L + ++ A E E K P+ +V D M Sbjct: 507 MAKPSILVVEDNVEMNRFIAELLASR-YRIYTAYDGVEGLEKL-KGFTPDLIVTDCMMPN 564 Query: 59 V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + E + +RQMP ++ + L + D + G + ++ KPF+ E L + Sbjct: 565 MSGDEMVERIRQMPEYDNIPIVLLTAKADENMRVKLLNNGCSDYINKPFSAEELTARITN 624 Query: 117 LPQMQKSKD 125 L M+K+K Sbjct: 625 LMSMKKAKQ 633 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 18/130 (13%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------------LLPNY 49 +++VD + + G S +A ++ + Sbjct: 954 KVMVVDDFEETLHLLSVMLTKQGAKAETYLSAADAINAFQQNIKSTDSTESTTASAPVDI 1013 Query: 50 LVIDESMEGVLE--FIAHVRQMPL---GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP 104 ++ D +M V FI +R+ V L G N + KP Sbjct: 1014 ILTDITMPHVDGYKFIEMIRERENSLGLPATPVIALTAAASIADKTKVQSFGFNMHIAKP 1073 Query: 105 FNRETLRFAM 114 N L ++ Sbjct: 1074 VNLYELTNSI 1083 >gi|269959667|ref|ZP_06174047.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835590|gb|EEZ89669.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + F G + A + + E + +++D + + Sbjct: 1 MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + M+ G + GA+ +L KPF+ + L M L + Sbjct: 60 GLAMCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119 Query: 121 QK 122 + Sbjct: 120 YR 121 >gi|188990198|ref|YP_001902208.1| two-component system response regulator protein [Xanthomonas campestris pv. campestris str. B100] gi|167731958|emb|CAP50144.1| two-component system response regulator protein [Xanthomonas campestris pv. campestris] Length = 280 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E R+ + P+ +V+D M G Sbjct: 49 VLVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKRI-TQRRPDLIVLDVMMPGEDGLS 107 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A V L + I G GA+ +L KP N L +R L + + Sbjct: 108 AARSLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQ 166 >gi|154499881|ref|ZP_02037919.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC 29799] gi|150271479|gb|EDM98736.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC 29799] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + + + + ++ + +V+D + G+ F Sbjct: 2 RILIVEDEVRLAEALSQIMAEQRYQTDVVYTGSDGLDYALTSQY-DVIVLDVMLPGLNGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ ++ KPF+ E L +R L + Q Sbjct: 61 EVVRRLRSAHNSTPVLMLTAKDETADKVTGLDCGADDYMTKPFDPEELMARIRALTRRQ 119 >gi|126701214|ref|YP_001090111.1| two-component response regulator [Clostridium difficile 630] gi|254977214|ref|ZP_05273686.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094542|ref|ZP_05324020.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255102800|ref|ZP_05331777.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308621|ref|ZP_05352792.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255316295|ref|ZP_05357878.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518956|ref|ZP_05386632.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255652135|ref|ZP_05399037.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260685108|ref|YP_003216393.1| two-component response regulator [Clostridium difficile CD196] gi|260688766|ref|YP_003219900.1| two-component response regulator [Clostridium difficile R20291] gi|306521867|ref|ZP_07408214.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115252651|emb|CAJ70494.1| Two-component response regulator, CheY family [Clostridium difficile] gi|260211271|emb|CBA66824.1| two-component response regulator [Clostridium difficile CD196] gi|260214783|emb|CBE07502.1| two-component response regulator [Clostridium difficile R20291] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + K L N GF+V ++ EA K + +ID S+ Sbjct: 1 MKRIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNK-FDLALIDISLPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++ D+ V +L D ++ G GA+ ++ KPF L +R Sbjct: 60 GFTICTEIKEK---QDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTAL 116 Query: 119 QM 120 + Sbjct: 117 RK 118 >gi|194439219|ref|ZP_03071299.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli 101-1] gi|253774332|ref|YP_003037163.1| DNA-binding transcriptional activator KdpE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160762|ref|YP_003043870.1| DNA-binding transcriptional activator KdpE [Escherichia coli B str. REL606] gi|300932412|ref|ZP_07147674.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 187-1] gi|194421804|gb|EDX37811.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli 101-1] gi|242376457|emb|CAQ31159.1| KdpE transcriptional activator [Escherichia coli BL21(DE3)] gi|253325376|gb|ACT29978.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972663|gb|ACT38334.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli B str. REL606] gi|253976857|gb|ACT42527.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli BL21(DE3)] gi|300459855|gb|EFK23348.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 187-1] gi|323963145|gb|EGB58714.1| response regulator receiver domain-containing protein [Escherichia coli H489] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|332524525|ref|ZP_08400732.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107841|gb|EGJ09065.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 663 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 3/115 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLV+ + R+V L + G V A +A E + + +++D M G+ Sbjct: 534 RTVLLVEDDAVNREVTSCLLAEAGLAVELAEDGLQALECVARRSY-DLVLMDMQMPGLDG 592 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +RQ+P G DV V L E AG + F+ KP + L A+ Sbjct: 593 LEATRRLRQLPRGHDVPVVALTANAFAEDRGRCLAAGMDDFITKPVDPARLFEAV 647 >gi|332094359|gb|EGI99410.1| KDP operon transcriptional regulatory protein kdpE [Shigella boydii 5216-82] Length = 152 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALESDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-ELPQ 119 I +R + + V V L + IA AGA+ +L KPF L+ +R L + Sbjct: 60 G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALLR 118 Query: 120 MQKSKDENQ 128 ++++ + Sbjct: 119 HRRARSAGE 127 >gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 239 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 1/116 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+++ + ++ + GF V E + +++D + G+ F Sbjct: 2 LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEY-DLILLDVMLPGMNGFQI 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + L + E+++ G + GA+ ++ KPF L + + + Sbjct: 61 LEKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 116 >gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family [cyanobacterium UCYN-A] Length = 233 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLVD V + G +V A + EA + E +P+ ++ D M + Sbjct: 7 ILLVDDEPSVCDSIQAYLEYNGDLIVKIANNAKEAWKLLET-TIPDIIISDVMMPEIDGY 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F+ +R + + +L I G AG +++L KPF+ E L ++ + Sbjct: 66 QFLERIRHNNRLQTIPLIFLTARGMTADRIKGYNAGCDAYLPKPFDPEELEAIVKSFLER 125 Query: 121 QKSKDE 126 +K ++ Sbjct: 126 RKINEK 131 >gi|291286123|ref|YP_003502939.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] gi|290883283|gb|ADD66983.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] Length = 121 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L VD S +R++ + G+ V EA+ +A + + +V D +M + Sbjct: 3 KTILTVDDSASIRQMVKFTLTKEGYNVIEASDGKDALTKAGSNTV-DMVVTDLNMPNMDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I +R P + + L E K G AGA +++KPF E L +++ + Sbjct: 62 ITLIKELRAQPKFKFIPIIMLTTESQDGKKSEGKSAGATGWIVKPFKPEQLITITKKVLR 121 >gi|225619217|ref|YP_002720443.1| response regulatory protein AtoC [Brachyspira hyodysenteriae WA1] gi|225214036|gb|ACN82770.1| response regulatory protein (atoC) [Brachyspira hyodysenteriae WA1] Length = 449 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D +R + G+ V A + + E K + ++ D M Sbjct: 1 MPKILVIDDEKNIRDGIKKSLEFEGYEVVTAENGEKGIEAVYKGG-IDLVITDLKMPEKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 EF+ + + + V L + E + R GA F+ KPFN + + + Sbjct: 60 GEEFLKDI--LDFDKHIPVIVLTGHGNVETAVEMMRLGAYDFMTKPFNLDKMLLIIARAL 117 Query: 119 QMQKSKDENQFLDA 132 + + K N+ L++ Sbjct: 118 ESKNIKKANETLES 131 >gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662] gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662] gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + F V T + + E + +++D + GV Sbjct: 1 MSRVLIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTED-FDMIILDIMLPGVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIREK---KDIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116 Query: 119 QMQK 122 + + Sbjct: 117 ERYR 120 >gi|163756173|ref|ZP_02163288.1| two-component system, transcriptional regulatory protein [Kordia algicida OT-1] gi|161323785|gb|EDP95119.1| two-component system, transcriptional regulatory protein [Kordia algicida OT-1] Length = 237 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 1/120 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + + V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGTVLKDYLSMNDYDVVHAKNGMEGFEKFKKDNY-DLCILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F T+V + +L + E ++ G + GA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNTEVPIIFLTAKALKEDVMKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124 >gi|146328950|ref|YP_001209795.1| two component phosphate response regulator PhoB [Dichelobacter nodosus VCS1703A] gi|146232420|gb|ABQ13398.1| two component phosphate response regulator PhoB [Dichelobacter nodosus VCS1703A] Length = 229 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 60/129 (46%), Gaps = 4/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ ++++ + D + EA ++ +A+ +++ +P+ +++D + Sbjct: 3 KRILLVEDEPAIQQLLLYGLQDQ-YQCIEAGTLAQAKTILQQQ-IPDLVLLDWMLPDGSG 60 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R++ + V L D +I G GA+ +L KPF+ L+ ++ L + Sbjct: 61 IKILEDLRKIETLRYLPVIMLTARADERDIIKGLDYGADDYLTKPFSMAELQSRIKALFR 120 Query: 120 MQKSKDENQ 128 +E Q Sbjct: 121 RMPESEEEQ 129 >gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1] gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1] gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + G+ A +E+ P+ +++D + + Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKF-REVNPDLVILDLMLPVLDGLE 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ ++ + L + + + G +GA+ +L+KPF+ E L +R + Sbjct: 66 VA-RRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRR 121 >gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] Length = 1500 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R R++ G+ + E + +A FC+++ +P+ +++D M + F Sbjct: 926 RVLIVDDDRTMRMALRNVLEKGGYWIDEVINGSQALAFCKQQ-MPDLVLMDAVMPVLDGF 984 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R +P V + D + + AGA ++ KP + L+ + L Sbjct: 985 NACAQIRDLPGSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLQKRVARLLDA 1044 Query: 121 QKSKDENQFLD 131 +++ + L Sbjct: 1045 SRAEKDIHQLA 1055 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 4/120 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + ++V + G V ++ EA + + +++D M + Sbjct: 663 RRVLVVEDNRVNQQVAVGMLERLGCRVEVVSNGQEALDAM-SGKVYELVLMDCHMPQMDG 721 Query: 62 --FIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G V + + V AG N +L KP LR +R Sbjct: 722 YEATRQIRIREAGKKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWL 781 Score = 65.6 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 11/139 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58 LL+V+ S + R+ F+ +G A + +A + + + +++DE+ Sbjct: 520 RLLIVEDSTVSRRFLGQTFSSWGMYHGCAENGQQALKMLRSAVAEGRSYDLVLVDENTPD 579 Query: 59 --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR--AGANSFLLKPFNRETLRFAM 114 LE + + L V + + ++ +G +++ KP + +L + Sbjct: 580 LKGLELAQQIAEDSLIASVKIILM---GRQRHPVSDISPLSGVVNYVAKPVQQSSLYNTI 636 Query: 115 RELPQMQKSKDENQFLDAI 133 + K AI Sbjct: 637 ITAVKQNKEVVSETLSAAI 655 >gi|260220645|emb|CBA28392.1| Transcriptional regulatory protein ompR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 274 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+VD + ++ + F F V A R + + N +V+D + G Sbjct: 34 SILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAV-NLVVLDVMLPGTDGL 92 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ + + V L I G GA+ ++ KPF L + + + + Sbjct: 93 TLS-REIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQ 151 Query: 123 SKDE 126 E Sbjct: 152 GAKE 155 >gi|218889615|ref|YP_002438479.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|218769838|emb|CAW25598.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 246 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + V L D I G GA+ +L KPF+ L + + + Sbjct: 66 LCRELR-VGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 243 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60 ++L+ + R ++V A A + + + + +V+D M + Sbjct: 8 QTILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLD 67 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R ++V + + + G GAN +++KPF+ + L +R + Sbjct: 68 GFQVCQRLRA---TSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSIL 124 Query: 119 QMQKSKDE 126 + + E Sbjct: 125 RRAARRQE 132 >gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396] gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+V+ R+ R + GF+V A + + R E + +V+D + + Sbjct: 1 MK-LLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEH-FDLIVMDIMLPDLD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G V +L + G +GA+ +L+KPF L +R + + Sbjct: 59 GWRLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRR 118 >gi|329946264|ref|ZP_08293858.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170 str. F0386] gi|328527556|gb|EGF54551.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170 str. F0386] Length = 254 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 13/141 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDES 55 +LLV+ R GF V EA A E E P + +++D Sbjct: 19 TRILLVEDEENFRDPLAFSLRRDGFEVIEAEDGQRAVEIFETSRRPGGVGPIDLVLLDLM 78 Query: 56 ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113 + E +R + V V L + I G GA+ ++ KP++ L Sbjct: 79 LPRLDGTEVCTRIR---RSSSVPVIMLSAKDTELDKIVGLEIGADDYVTKPYSYRELLAR 135 Query: 114 MRELPQMQKSK--DENQFLDA 132 ++ + + + + Q L A Sbjct: 136 LKAVLRRSRVVPDEPEQVLAA 156 >gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 232 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D H + K+ H G+ V A EA L P+ +++D M + Sbjct: 4 TILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGA-LKPDLVILDIMMPKLDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A + + DV + L + D I G + G + + KPF+ L ++ + + K Sbjct: 63 EACQK-IKGAADVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSK 121 >gi|317476245|ref|ZP_07935496.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316907656|gb|EFV29359.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 375 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + L + F + A + +A E +KE P+ +++D M Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVDKEH-PDLVLLDVMMPDLSGF 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P D+ + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 70 EVAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129 Query: 121 QKSKD 125 +K Sbjct: 130 VAAKR 134 >gi|215485723|ref|YP_002328154.1| DNA-binding transcriptional activator KdpE [Escherichia coli O127:H6 str. E2348/69] gi|312965132|ref|ZP_07779369.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli 2362-75] gi|331682108|ref|ZP_08382732.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli H299] gi|215263795|emb|CAS08131.1| DNA-binding response regulator in two-component regulatory system with KdpD [Escherichia coli O127:H6 str. E2348/69] gi|312290223|gb|EFR18106.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli 2362-75] gi|331080787|gb|EGI51961.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli H299] Length = 225 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|198282255|ref|YP_002218576.1| winged helix family two component transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246776|gb|ACH82369.1| two component transcriptional regulator, winged helix family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 234 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + FGF V + + E E + +V+D + Sbjct: 5 KQILVVDDDLRLRGLVESHLQGFGFGVRGMSDGRQ-IESLLAEAPVDLIVLDLGLPHEDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ DV + L D I G GA+ +L KPF+ L ++ + + Sbjct: 64 LQICRRLRQH---HDVPILMLTARGDEVDRILGLEMGADDYLAKPFHPRELVARIQAILR 120 Query: 120 MQKSKDE 126 + D Sbjct: 121 RVRGADR 127 >gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + GF +A + P+ +++D + G+ Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAF-HDAKPDLVLLDLMLPGLDGI 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R V + L + D ++ G +GA+ +++KPFN + L +R + Sbjct: 63 QVCDLIRAESG---VPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLR 118 >gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 245 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 13/141 (9%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL----PNYLVIDESME 57 LL+V+ +R+ G+ V + EA + + +V+D + Sbjct: 13 KRLLIVEDDKSIRETLNEALVAEGYQVEACKTGDEAEARVFSQFDTRKKIDLIVLDLMLP 72 Query: 58 G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +E VR+ + + + + G GA+ +L+KPF L R Sbjct: 73 NLNGIELCRRVRKN--NIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCR 130 Query: 116 ELPQM-----QKSKDENQFLD 131 + + +K++D +Q L Sbjct: 131 AILRRSETNHEKAQDSSQVLS 151 >gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|317495281|ref|ZP_07953651.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914703|gb|EFV36179.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 238 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D +RK+ G++V EA++ + E + + +++D + + Sbjct: 4 RVLVIDDEERIRKLLIMYLEKEGYIVDEASNGQDGLERLKYMDY-SCVLLDVHLPILNGK 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ +R+ V + + D + + G GA+ +++KPF+ L + + Q Sbjct: 63 SILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQR 119 Query: 121 QK 122 K Sbjct: 120 TK 121 >gi|298243491|ref|ZP_06967298.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556545|gb|EFH90409.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 253 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + + + + G+ V A + A + +K P+ L++D +M + F Sbjct: 29 ILVVDDDRFANTLVQFVLSKEGYEVETADNPRGALQMIQK-REPDLLILDVTMPYINGFE 87 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G ++ + ++ + E + G GA+ ++ KP+N + L ++ + + K Sbjct: 88 FSAKLKAEGYEIPLIFMTAQDTIEAKLQGFNIGADDYICKPYNHQELVARVQAVLRRIK 146 >gi|289549393|ref|YP_003470297.1| response regulator [Staphylococcus lugdunensis HKU09-01] gi|315659938|ref|ZP_07912797.1| response regulator [Staphylococcus lugdunensis M23590] gi|289178925|gb|ADC86170.1| response regulator [Staphylococcus lugdunensis HKU09-01] gi|315495226|gb|EFU83562.1| response regulator [Staphylococcus lugdunensis M23590] Length = 221 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++++VD + + GF A + EA E + + +++D M Sbjct: 1 MYNIMIVDDEENIVSFIQESLKLEGFKTTVAYNGREALEKINEH--IHLIILDIKMPYSD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F Q +++ + +L + + + + GA ++ KPF E L + + Sbjct: 59 GFEVA--QSLSQSNIPIIFLTAKDNLDTRLKCFSLGAKDYIAKPFYMEELIVRIENILTQ 116 Query: 121 QKSKDENQFLD 131 S +N+ + Sbjct: 117 NNSYSKNKNIK 127 >gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 4/117 (3%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 +V+ + ++R + G+ V A EA+E + P +++D + + Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFL-QYSPCAVILDLMLPKLSGEEVC 67 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R ++ + L ++ E I G R GA+ +++KPF+ E L + + + Sbjct: 68 RWIRSQKRN-EISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRR 123 >gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 228 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + K G+ + + + +++D + Sbjct: 1 MSRILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQD-FDLILLDLMLPELN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E VR++ + + + ++G GA+ +++KPF E L +R L Sbjct: 60 GIEVARRVREL---KNTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALL 116 Query: 119 QMQKSKD 125 + +D Sbjct: 117 RRINIED 123 >gi|256042377|ref|XP_002569366.1| sensor histidine kinase/response regulator [Schistosoma mansoni] gi|227277727|emb|CAY18622.1| two-component system sensor histidine kinase/response regulator (intestinal bacteria-bacteroides thetaiotaomicron), putative [Schistosoma mansoni] Length = 235 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL+D + + G+ V A S+ RE ++ + + LV+D + Sbjct: 8 ILLIDDDMRLSAMVADYLRSHGYQVSTAASLTAGRELLGRQAM-DALVLDLMLPDGDGLD 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R P + V L + I G GA+ +L KPF L ++ + + + Sbjct: 67 LCRELRASPRTRSLPVLMLSARGEPTDRIVGLEVGADDYLPKPFEPRELVARLQTVLRRR 126 Query: 122 KS 123 ++ Sbjct: 127 RA 128 >gi|212704463|ref|ZP_03312591.1| hypothetical protein DESPIG_02519 [Desulfovibrio piger ATCC 29098] gi|212672184|gb|EEB32667.1| hypothetical protein DESPIG_02519 [Desulfovibrio piger ATCC 29098] Length = 523 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 7/136 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD H +R+ + L + G+ A S EA +E +P +V+D M G+ Sbjct: 1 MAEILIVDDDHHLRQGFQRLLDAEGYETRTAASAEEALNLM-REKMPQCVVMDVRMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118 A R L V + E I R GA ++LKPF+ + ++ Sbjct: 60 GLEALKRMRALEGCPPVVIMTAYSTTETAIEATRLGAFDYMLKPFDIPQVLELLQRALAA 119 Query: 119 ----QMQKSKDENQFL 130 + +++ + L Sbjct: 120 GESQRRHEAQSAEESL 135 >gi|12964066|emb|CAC29257.1| putative regulatory protein [Bartonella taylorii] Length = 240 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LVD + G+ V T A + P+ + D M + Sbjct: 9 QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHP-PHLAIFDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L ++ + + Sbjct: 68 M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRS 126 Query: 122 KSKDE 126 ++++ Sbjct: 127 SARNQ 131 >gi|13473723|ref|NP_105291.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14024474|dbj|BAB51077.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 230 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 6/117 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ D +R+V G A + + P+ +V+D M + Sbjct: 5 ILVADDDPHIREVICFALEKAGMKTLGVADGAAALQEIGR-RAPDLVVLDIGMPEMDGLE 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +DV V +L + I G G + ++ KPF+ L + + Sbjct: 64 VCRRLR---HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVIL 117 >gi|90426403|ref|YP_534773.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108417|gb|ABD90454.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 221 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + G++V EA + E +V+D + G+ Sbjct: 2 RVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDY-AAIVLDLGLPGMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V L + + + G AGA+ +L KPF E L +R + + Sbjct: 61 AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 123 SKD 125 + Sbjct: 121 GQA 123 >gi|317475520|ref|ZP_07934783.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908351|gb|EFV30042.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 775 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 4/121 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+V+ + +R+ + + +A + EA KE ++ D M + Sbjct: 530 SILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIV-KEQEVGLILTDVMMPVMDGL 587 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V L + D ++ + G + GA+ ++ KPF+ + ++ L + Sbjct: 588 QLCKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFRT 647 Query: 121 Q 121 + Sbjct: 648 R 648 >gi|310658379|ref|YP_003936100.1| DNA-binding response regulator [Clostridium sticklandii DSM 519] gi|308825157|emb|CBH21195.1| DNA-binding response regulator [Clostridium sticklandii] Length = 233 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + VF+A + A + EKE + + +++D M + F Sbjct: 5 NILIVEDDKQIADAIEIYMKNQNYGVFKAHNGQLAIDIFEKE-VIHLIIMDVMMPVMDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-- 120 + ++ + V + L + + IAG GA+ ++ KPFN L + + Sbjct: 64 T-AIMKIRQSSTVPIIVLSAKSEDMDKIAGLNIGADDYVTKPFNPMELIARVNSNLRRYV 122 Query: 121 ----QKSKDENQFLDAI 133 +K D+N L +I Sbjct: 123 NFSMKKESDKNSKLISI 139 >gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074] gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074] Length = 1827 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 2/116 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1705 QKVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1764 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R+MP + + L + +GA+ ++ KP + + L M Sbjct: 1765 YATTSAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLAVME 1820 >gi|283798726|ref|ZP_06347879.1| DNA-binding response regulator DltR [Clostridium sp. M62/1] gi|291073407|gb|EFE10771.1| DNA-binding response regulator DltR [Clostridium sp. M62/1] gi|295090823|emb|CBK76930.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] gi|295116054|emb|CBL36901.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 224 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL + + K + + V A E+ E + + +++D M + Sbjct: 2 RLLLAEDEAALSKALTAILERNNYSVDSVCDGQAALEYLESDNY-DGVILDIMMPKIDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G+ V V L + + + + G AGAN +L KPF+ L +R + + Q Sbjct: 61 TVLRKLRQKGSLVPVLLLTAKSEVDDKVLGLDAGANDYLTKPFHSRELLARIRAMTRTQT 120 Query: 123 SKDENQF 129 + ++Q Sbjct: 121 AHPDSQL 127 >gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 232 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D +RK R G+ V EA + E P+ LV+D + + Sbjct: 9 TILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALSK-PDLLVLDLGLPDMDG- 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ + V V L + + + +GAN ++ KPF + +R L + Sbjct: 67 QQVLREFREWSTVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRALLRQAP 126 Query: 123 SKDENQ 128 + + + Sbjct: 127 AGEAQE 132 >gi|258515402|ref|YP_003191624.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779107|gb|ACV63001.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 922 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E + + +++D M + Sbjct: 802 RKILIVDDDLRNVFSLTVVLEKHGVKVLFAENGKEGINALRENPDIDLVLMDIMMPEMDG 861 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +RQ+ + V L + AGA+ ++ KP N E L ++ Sbjct: 862 YEAMQTIRQIHEYETLPVIALTAKAMKNDREKCIDAGASDYISKPVNVEQLLSLIQVWL 920 >gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] Length = 232 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLV+ +R + + GF V A + EA ++C + + +++D + Sbjct: 5 KHILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQT-FDLVILDIMIPKLNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE + +R+ + + + + G GA+ ++ KPF+ ++ + + Sbjct: 64 LEVLKVIREQAA---LPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] Length = 235 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + V++ S EA E + + ++D + + Sbjct: 4 KILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMES-VDFDLAILDIMLPDISGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G + L + + I G GA+ ++ KPF L ++ + Sbjct: 63 SICQIMR--EKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRR 120 Query: 121 QK 122 K Sbjct: 121 YK 122 >gi|19704596|ref|NP_604158.1| two-component response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327707|ref|ZP_06870248.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714890|gb|AAL95457.1| Two-component response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155193|gb|EFG95969.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 233 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+++ ++++ + V A + E K + +++D + Sbjct: 10 MNKILIIEDDKNIQRLLTLELRHKNYSVDSAYDGEQGIEMFSKNSY-DLVLLDLMLPKKS 68 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R++ + + + + GAN ++ KPF E L +R Sbjct: 69 GKEVCQELRKLAE---TPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVAT 125 Query: 119 QMQKSKDENQF 129 + +++ + QF Sbjct: 126 RNKENSNNKQF 136 >gi|84625308|ref|YP_452680.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369248|dbj|BAE70406.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 242 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 11 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + +S Sbjct: 70 AARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQS 129 Query: 124 KDEN 127 +E Sbjct: 130 SNEQ 133 >gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143] gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143] Length = 269 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ ++ G+++ + + K+ +++D + G+ Sbjct: 17 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L + + G +GAN +L+KPF+ L +R + Sbjct: 75 GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 133 Query: 121 QKSKD 125 + + Sbjct: 134 HHALN 138 >gi|239834066|ref|ZP_04682394.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239822129|gb|EEQ93698.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ R G+ V EA +A E + P+ +V+D + Sbjct: 7 KILVVDDEPAIRKLLRVGLTTEGYTVVEAADGSQADERIAMDK-PDIVVLDLGLPDTDGH 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + + L D ++ GA+ ++ KPF + L +R + Sbjct: 66 TLLQRWRENGISLPILILSSRTDEAGIVRALEEGADDYIPKPFGMKELAARLRVAL-RHR 124 Query: 123 SKDENQ 128 + + Q Sbjct: 125 LQQQGQ 130 >gi|254518330|ref|ZP_05130386.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912079|gb|EEH97280.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 224 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 57/132 (43%), Gaps = 5/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+V+ +R++ G+ V+ A +A E E + + ++ D M Sbjct: 1 MINILIVEDDKSLRRLMEVFLKQNGYEVYLAEDGEKAIEIFE-DKHIDLVICDIMMPKVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R ++ + + + E G GA+ +++KP + + + + L Sbjct: 60 GYELVKDLRN--SNYELPILMVTAKETIEDKRKGFLVGADDYMVKPIDLDEMLLRINALL 117 Query: 119 QMQKSKDENQFL 130 + + +E++ + Sbjct: 118 RRSRISNEHKLI 129 >gi|254423774|ref|ZP_05037492.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196191263|gb|EDX86227.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 636 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + ++V + + +V+D + + Sbjct: 2 RVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYA-STFDYDLVVLDWMLPQLSGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V + L ++ + I G AGA+ +++KPF+ + L +R L + Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 123 SKDE 126 + E Sbjct: 121 HETE 124 Score = 97.6 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 7/126 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +++VD K L + + F + T+ ++LP+ +V D M Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLF-NQVLPDLVVFDVEMPQINGF 568 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN----RETLRFAMRE 116 E +R + + +L + D K GA+ ++ KP + L + + Sbjct: 569 ELARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATRLLNRLNQ 628 Query: 117 LPQMQK 122 +++ Sbjct: 629 TADIRR 634 >gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 224 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + K D ++V AT +F E +++D + + Sbjct: 2 RILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEA-FSYKLILLDVMLPKLDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L + + G AGA+ +++KPF+ L +R L + Sbjct: 61 SFCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRR 118 >gi|90414215|ref|ZP_01222196.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK] gi|90324765|gb|EAS41303.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK] Length = 488 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ S + + + + GF V A + EA E + +++D M + F Sbjct: 361 TILLVEDSPSNQMIAKAILAKNGFNVATANNGKEAVAALE-NTSYDLILMDLQMPEMNGF 419 Query: 63 --IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++R + D+ + + V + + G + FL KP N+ + + Sbjct: 420 EACTYIRDLHNNKSDIPIIAMTANVSQQDQVQCLSVGMDDFLTKPINKIKMLEVLHHWLG 479 Query: 120 MQKSKD 125 S Sbjct: 480 RNHSHK 485 >gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces tenjimariensis] Length = 234 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L V+ ++R+ + GF V E + P+ ++D + G+ Sbjct: 4 THVLFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRAD-RPDIALLDVMLPGMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 63 VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435] gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M ++L+V+ + + + V + + +++D + Sbjct: 1 MTNILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNY-DLIILDLMLPNIN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE VRQ + + + D + G GA+ +++KPF E L +R + Sbjct: 60 GLEICRRVRQE---QSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVL 116 Query: 119 QMQKSKD 125 + Q KD Sbjct: 117 RRQPQKD 123 >gi|324014608|gb|EGB83827.1| transcriptional regulatory protein OmpR [Escherichia coli MS 60-1] Length = 239 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L VD +R + + GF V + + + + +V+D + G Sbjct: 6 KILGVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + + + + I G GA+ ++ KPFN L +R + + Q Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 123 SK 124 ++ Sbjct: 125 NE 126 >gi|317476823|ref|ZP_07936066.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316906998|gb|EFV28709.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1420 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + +R R + D + VFEA EA + ++++ D M + Sbjct: 1168 SILVVEDNADMRGYIRSILRDK-YNVFEAAHGAEALNILNSHSV-DFIISDLMMPVMDGI 1225 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V++ + + L + E + R G + +LLKPF+ L + + + Sbjct: 1226 ELSRRVKENFAISHIPFLMLTAKTSQESRLESYRIGVDEYLLKPFDETLLLTRIENILEN 1285 Query: 121 QKSKDE 126 +K + Sbjct: 1286 RKRYQK 1291 >gi|317479509|ref|ZP_07938640.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904329|gb|EFV26152.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 875 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + +R + L ++ F V +A E K +P+ ++ D M G+ Sbjct: 629 TVLVIDDNADIRNYVKSLLSNE-FRVLDAADGTEGIRLAMK-YVPDVIISDVMMPGMDGV 686 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G GA+S++ KPFN + L +R L Sbjct: 687 ECCRRLKGELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFNSQLLLSRVRNLIAN 746 Query: 121 QKSKDE 126 ++ + Sbjct: 747 RRQLRQ 752 >gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus subtilis subsp. spizizenii str. W23] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ H + ++ H GF + A E +++ + +++D + Sbjct: 1 MQRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSY-DLILLDIMLPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F+ +R+ +++ V + + G GA+ ++ KPF+ L ++ Sbjct: 60 GMDFLKIIREK---SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAI 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|299139390|ref|ZP_07032565.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598659|gb|EFI54822.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 236 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 2/123 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL+D + + GF + A + + +++ +++D + G+ F Sbjct: 7 RLLLIDDDRSLAALITEYCGSGGFSITAADTGEDGIRLAQQQ-YFLLIILDVMLPGIDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ ++ + L + I G +GA+ +L KPF E L ++ + + Sbjct: 66 -EVLRRIRYSSNTPILMLTTRGAAKDRIHGLESGADDYLPKPFQPEELLARIQSILRRVH 124 Query: 123 SKD 125 ++ Sbjct: 125 PRE 127 >gi|218129958|ref|ZP_03458762.1| hypothetical protein BACEGG_01541 [Bacteroides eggerthii DSM 20697] gi|217988068|gb|EEC54393.1| hypothetical protein BACEGG_01541 [Bacteroides eggerthii DSM 20697] Length = 1420 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+V+ + +R R + D + VFEA EA + ++++ D M + Sbjct: 1168 SILVVEDNADMRGYIRSILRDK-YNVFEAAHGAEALNILNSHSV-DFIISDLMMPVMDGI 1225 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V++ + + L + E + R G + +LLKPF+ L + + + Sbjct: 1226 ELSRRVKENFAISHIPFLMLTAKTSQESRLESYRIGVDEYLLKPFDETLLLTRIENILEN 1285 Query: 121 QKSKDE 126 +K + Sbjct: 1286 RKRYQK 1291 >gi|167951072|ref|ZP_02538146.1| two-components system response regulator [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 220 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + G++V A S +E + + +++D ++ + Sbjct: 3 ILVIEDNPDLVANLYDFLEPRGYVVDAAGSARGGL-HFVQEKVYDAIILDLTLPDMDGLE 61 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G D V L + + G +GA+ +L+KPF + L ++ L + Sbjct: 62 VCKRLRDSGCDTPVLMLTARDTLDDKLEGFGSGADDYLVKPFAMQELDARLKALVRRVSG 121 Query: 124 KDENQFL 130 + L Sbjct: 122 DQSRELL 128 >gi|156742258|ref|YP_001432387.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] gi|156233586|gb|ABU58369.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] Length = 263 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++++VD + + H G+ +A + + P+ +++D M + Sbjct: 7 TIMVVDDDPAISTLISHQLRSLGYRTVCLRDGLQALQQM-AIIQPDLVLLDVMMPHMSGW 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R ++ + L + +I G AGA+ ++ KP+ L + + Sbjct: 66 DICRQIRA---CSEAPIILLTAKDADADVINGLNAGADDYVTKPYRIAQLHARIEAALRR 122 >gi|108760941|ref|YP_632415.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|34329419|gb|AAQ63912.1| mutant NtrC-like activator [Myxococcus xanthus] gi|108464821|gb|ABF90006.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 471 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD R+ + N+ G+ V EA + EA E P ++ D M + Sbjct: 4 QRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARI-GEFSPAVVLTDVRMPQMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G+D + E + ++GA++FLLKP + + + + ++ + + Sbjct: 63 LTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVLEKR 122 Query: 122 KSKDENQFL 130 + E + L Sbjct: 123 SLRQEAEAL 131 >gi|89897562|ref|YP_521049.1| hypothetical protein DSY4816 [Desulfitobacterium hafniense Y51] gi|89337010|dbj|BAE86605.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 6/126 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L D +R V H+ + G+ A EA E E P+ +++D M Sbjct: 1 MK-IMLADDEESIRIVVEHIVTEDGYDFCYAADGAEALSVFEAEN-PDLVILDVMMPKLN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ G++V + L + D G +AGA+ +L+KPF+ L + L Sbjct: 59 GFDVCTQLRK--KGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSTLELSLRIEALL 116 Query: 119 QMQKSK 124 + ++ + Sbjct: 117 RRREHQ 122 >gi|116671596|ref|YP_832529.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116611705|gb|ABK04429.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 224 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + + G+ A + + + + + +V+D + + Sbjct: 1 MTLVLIIEDEAQLARAMQINLRAHGYQAITAGLGADGLKLAAQHPV-DIVVLDLGLPDMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + V V L E + AGA+ ++ KPF + L +R + Sbjct: 60 GV-EVIRGIRGWSSVPVIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRAASRR 118 Query: 121 QKSKDE 126 ++ E Sbjct: 119 SPAQRE 124 >gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 227 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + ++ N G+ A + + E + +++D M + F Sbjct: 4 TILIVEDDSKIARLLELELNHAGYATQVAFNGKDGL--VAAENDIDLVLLDVMMPELSGF 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-- 120 R G V V L + +AG GAN ++ KPF E L +R L ++ Sbjct: 62 EVLRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRLTT 121 Query: 121 QKSKDENQF 129 Q + + NQ Sbjct: 122 QAAVETNQL 130 >gi|319782570|ref|YP_004142046.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168458|gb|ADV11996.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 242 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R + + + GF V A E + + +V+D + Sbjct: 7 ILVVDDDREIRTLLQRYLDSQGFRVTAAADRRECEQRL-GSGQFDLIVLDVMLPDGSGLD 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + L + I G GA+ +L KPFN L +R + + Sbjct: 66 ICRGLR--DRKPHTPIILLTALKEDVDRIIGLELGADDYLGKPFNPRELIARIRAVLRRS 123 Query: 122 KSKD 125 ++ Sbjct: 124 TPEE 127 >gi|239502568|ref|ZP_04661878.1| AdeR [Acinetobacter baumannii AB900] Length = 242 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + + + G V A + +A E + +++D + Sbjct: 13 KQILVVEDEYDIGDIIEQYLKREGMRVIRAMNGKQAIE-IHASQPIDLILLDIKLPELNG 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ +RQ V L + R GA+ F++KPFN + ++ + + Sbjct: 72 WEVLSKIRQKA---QTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLR 128 Query: 120 MQKSKDE 126 + Sbjct: 129 RTHQNQQ 135 >gi|160888745|ref|ZP_02069748.1| hypothetical protein BACUNI_01163 [Bacteroides uniformis ATCC 8492] gi|156861644|gb|EDO55075.1| hypothetical protein BACUNI_01163 [Bacteroides uniformis ATCC 8492] Length = 919 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + +R + L ++ F V +A E K +P+ ++ D M G+ Sbjct: 673 TVLVIDDNADIRNYVKSLLSNE-FRVLDAADGTEGIRLAMK-YVPDVIISDVMMPGMDGV 730 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G GA+S++ KPFN + L +R L Sbjct: 731 ECCRRLKGELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFNSQLLLSRVRNLIAN 790 Query: 121 QKSKDE 126 ++ + Sbjct: 791 RRQLRQ 796 >gi|94263976|ref|ZP_01287778.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455648|gb|EAT05830.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 362 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 56/134 (41%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + + + + + + V AT+ A + P+ +++D M + Sbjct: 6 KSVLVVDDTQTNIDILKGILSQ-DYTVKVATNGRLALKVAMSAKPPDLILLDVMMPDMDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ ++ V ++ + + E G GA ++ KP + ++ ++ + Sbjct: 65 YEVCRLLKADEKTFNIPVIFVTAKSEIEDEALGFTLGAADYITKPVSAPIVQARVKTHLE 124 Query: 120 MQKSKDENQFLDAI 133 M D + L+++ Sbjct: 125 MY---DRRRLLESM 135 >gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 6/119 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + G++V+EA EA E K + PN +++D + G+ Sbjct: 10 TILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARK-INPNIVILDIMLPGMDGY 68 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +++ + V L + + + G GA+ ++ KPF+ + L + + Sbjct: 69 EVCSIIKKSIKTS---VIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIR 124 >gi|328542823|ref|YP_004302932.1| transcription regulator protein [polymorphum gilvum SL003B-26A1] gi|326412569|gb|ADZ69632.1| Putative transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 233 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LLLVD +R + + D G+ V A + EA C L + L++D M G L+ Sbjct: 14 LLLVDDDSRIRDLLSRVLRDSGYRVTSAANAAEA-RRCMAGLEFDLLILDVMMPGETGLD 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ V + L D IAG GA+ +L KPF L + + + Sbjct: 73 LARTIRRE---NTVPILMLTARSDAADRIAGLEVGADDYLAKPFEPRELMLRIAAILRRG 129 Query: 122 KSKDENQ 128 + + Sbjct: 130 GQRRTER 136 >gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 222 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + + G+ V A + +A + +++D + Sbjct: 1 MK-ILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNY-DLVILDVMIPKIN 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R+ + L + + + G AGA+ +L KPF L +R + Sbjct: 59 GLEVCRILRREKNPAY--IILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVL 116 Query: 119 QMQKSKDEN 127 + EN Sbjct: 117 RRNSEDKEN 125 >gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + ++Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|289662595|ref|ZP_06484176.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668461|ref|ZP_06489536.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 239 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 8 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRTAMAQRRPDLIVLDVMMPGEDGLS 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + ++ Sbjct: 67 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 126 Query: 124 KDEN 127 +E Sbjct: 127 SNEQ 130 >gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 1149 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD G +V + EA E E+ + +++D M + Sbjct: 1025 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1084 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ P + + + + + +AGAN +L KP + + L +R Sbjct: 1085 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1143 Score = 86.8 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+++ ++ L ++ G+ A E E + +P+ +++D + L Sbjct: 759 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFELA-AQYIPDAILLDMRLPDHSGLT 817 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117 + +++ + V+ + E + GA + +KP +RE L+ L Sbjct: 818 VLQRLKEQAGTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 870 Score = 62.1 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 18/138 (13%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + R+ L D + +A +E + + ++ID + +L Sbjct: 879 KHILLVEDDDLQRESIARLIGDDDVEITAVAFAQDALALL-RENIYDCMIIDLKLPDMLG 937 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARA----GANSFLLKPFNRETLR 111 + + + + V + ++ +R+ GA + E L Sbjct: 938 NELLKRMTAEDIRSFPPVIVYTGRNLTREEEADLLKYSRSIIIKGAR-------SPERLL 990 Query: 112 FAMRELPQMQKSKDENQF 129 + +S+ N+ Sbjct: 991 DEVTLFLHKVESQLSNER 1008 >gi|148655542|ref|YP_001275747.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567652|gb|ABQ89797.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 261 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 9/125 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +++V+ + ++ + F V AT EA + K +P +++D ++ Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKH-VPGLIILDIVLDDGNGCD 69 Query: 62 FIAHVR------QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +R + DV + L D E + G RAGA+ +L KPF+ L F ++ Sbjct: 70 LCRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIK 129 Query: 116 ELPQM 120 + + Sbjct: 130 SILRR 134 >gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L] gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L] Length = 232 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 4 NSILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 63 IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119 Query: 120 MQKSKDEN 127 ++N Sbjct: 120 RYTYFNQN 127 >gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium] gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium] gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium] gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium] gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613] gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679] gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis] gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis] gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium] gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium] gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium] gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium] gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium] gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus] gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis] gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium] gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium] gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium] gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium] gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium] gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium] gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium] gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium] gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613] gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679] gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis] gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis] gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis] gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis] gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium] gi|383762|prf||1904198A vanR gene Length = 231 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 10/132 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD H + + + + VF+ + EA E C + + ++D + G L Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALE-CIDKSEIDLAILDIMLPGTSGL 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + L + I G GA+ ++ KPF L ++ + Sbjct: 63 TICQKIRDKHTY---PIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119 Query: 121 QKS----KDENQ 128 K K++N+ Sbjct: 120 YKKFSGVKEQNE 131 >gi|281209484|gb|EFA83652.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1067 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + R+V + G V +S EA + EK + + + +D M G+ F Sbjct: 936 RVLVVDDNMVNRQVAYKMLQSMGCNVDVVSSGMEALDRIEK-VTYDMIFLDIMMPGMDGF 994 Query: 63 --IAHVRQMP-----LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 +R+ + + + E + +G + +L KP R Sbjct: 995 QVTKEIRERELKRSNGTKHIPIIAMTANAFKEDEVKCINSGMDDYLSKPIKITEFR 1050 Score = 36.3 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 24/138 (17%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE----LLPNYLVIDESMEG 58 +LL++ + R + + V +A CE ++++ID + G Sbjct: 784 RVLLIERNANQRNFLTQQMGVWNIFLDSTDDVNDAIVMCEHAIAMLRPYSFIIIDLATVG 843 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLME------------VDFEKMIAGARAGANSFLLKPFN 106 + + + ++G + KP Sbjct: 844 NDALLLAQKLTEQSKA------SGHMLQLILLVPLKMRSPQLEEEARKSGFGEIVTKPIR 897 Query: 107 RETLRFAMREL--PQMQK 122 L +++ L Q QK Sbjct: 898 MSVLLDSLKSLSGLQRQK 915 >gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 217 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + N + A + EA + E + +++D + + Sbjct: 1 MIKILVVEDELPISNLIKLNLNMANYECKTAFNGEEALKEIE-NDSFDLILLDVMLPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + PLG + V +L + + G RAGA+ ++ KPF L + + + Sbjct: 60 GFTLLEKIKPLG--IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLR 116 >gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 256 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ + A +EL P+ +V+D + + Sbjct: 32 RVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGAL-RAARELRPDAVVLDMMLPDMDGL 90 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R DV V +L + E+ +AG AG + ++ KPF E + +R L + Sbjct: 91 SVLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSG 150 Query: 123 SKDE 126 + D Sbjct: 151 AADR 154 >gi|226310545|ref|YP_002770439.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093493|dbj|BAH41935.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 251 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + + + F + A + + +E + +++D + G+ Sbjct: 28 KRVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEW-DVILLDVMLPGLDG 86 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + L + G +GA+ ++ KPF E L +R + + Sbjct: 87 IAVCQKIRSV---KKTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFR 143 Query: 120 MQKSKD 125 Q+ ++ Sbjct: 144 RQEEQE 149 >gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 226 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 7/133 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M LL+V+ + + + +G+ V A+ EA + + + +++D ++ Sbjct: 1 MK-LLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEY-DVIILDLNLPKID 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ +++ + L E + G GAN +L+KPF+ L +R L Sbjct: 59 GIEVLKQIRQKD--SEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLI 116 Query: 119 QMQKSKDENQFLD 131 + + + EN L Sbjct: 117 RRKFIQ-ENSMLS 128 >gi|154506010|ref|ZP_02042748.1| hypothetical protein RUMGNA_03552 [Ruminococcus gnavus ATCC 29149] gi|153793509|gb|EDN75929.1| hypothetical protein RUMGNA_03552 [Ruminococcus gnavus ATCC 29149] Length = 140 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 9/129 (6%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +LL++ +R+ R L + V EA + E E + +++D M G Sbjct: 1 MKKEQVLLIEDDADIREGVRILLESENYCVEEAENGKSGLELLSDET--DLVILDIMMPG 58 Query: 59 VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + +R++ ++V V +L + + G AG + +L KPF+ L ++ Sbjct: 59 MSGLRTCEEIRKV---SNVPVLFLTAKAQESDKLIGLMAGGDDYLAKPFSYAELLGRVKA 115 Query: 117 LPQMQKSKD 125 L + Sbjct: 116 LLRRYNIYR 124 >gi|146306862|ref|YP_001187327.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145575063|gb|ABP84595.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 225 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 7/123 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVF---EATSVCEAREFCEKELLPNYLVIDESME 57 M LLL+D + ++ GF V EA + A P+ +V+D + Sbjct: 1 MSRLLLIDDDQELCELLSSWLTQEGFQVTACHEAGNARRALAL----QAPDAVVLDVMLP 56 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++ V L + I G GA+ +L KP + L +R + Sbjct: 57 DGSGLELLKQLRSEHPELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAV 116 Query: 118 PQM 120 + Sbjct: 117 LRR 119 >gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI] gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 226 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|261213122|ref|ZP_05927406.1| chemotaxis regulator CheY [Vibrio sp. RC341] gi|260838187|gb|EEX64864.1| chemotaxis regulator CheY [Vibrio sp. RC341] Length = 119 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L VD S +R++ H D G+ V A+ +A +K + ++ D +M G Sbjct: 1 MARVLAVDDSISIRQMVSHTLQDAGYEVETASDGRDALVKAQKS-RFDVIISDVNMPVMG 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 EF+ VR + L E EK G GA +L+KPFN ETL ++ + Sbjct: 60 GFEFVKAVRLQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119 >gi|238755886|ref|ZP_04617215.1| KDP operon transcriptional regulatory protein kdpE [Yersinia ruckeri ATCC 29473] gi|238705907|gb|EEP98295.1| KDP operon transcriptional regulatory protein kdpE [Yersinia ruckeri ATCC 29473] Length = 226 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 ++V+ +R+ R G+ VFE+ ++ P+ +++D + Sbjct: 1 MIVEDEKEIRRFVRTALESEGWRVFESETLQRGLIEAGT-RKPDLIILDLGLPDGDGLT- 58 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 ++R + + + + L E +A AGA+ +L KPF L +R + + Sbjct: 59 YIRDLRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHGAA 118 Query: 125 DEN 127 + Sbjct: 119 GQE 121 >gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603] gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621] gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621] gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603] gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 226 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATY-DLIVLDIMIPGIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|253702066|ref|YP_003023255.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251776916|gb|ACT19497.1| two component, sigma54 specific, transcriptional regulator, Fis family [Geobacter sp. M21] Length = 453 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L++D +R+V + G+ V+ A + E P +V D M G Sbjct: 4 KILVIDDDSSLRRVLEYNLQQEGYDVYTAADGDAGLQLFV-EKSPAVVVTDLKMPGKSGF 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ +++ V L + + + GA +L KPFNRE L+ + + Q+ Sbjct: 63 EVLSAIKESS--PATVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKALQL 120 Query: 121 QKSKDENQFLDA 132 Q +EN+ L Sbjct: 121 QGLSEENRLLKE 132 >gi|17229732|ref|NP_486280.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131331|dbj|BAB73939.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 196 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ +R + + F V +A + +KE +P+ ++ D +M Sbjct: 1 MTKILVIEDQEDIRSIIVEMLTAENFYVMDAENGQVGITMLQKE-IPDLIICDIAMPKID 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + R+ P + +L + + G GA+ +L+KPF R L A+ Sbjct: 60 GYEVVTWSRENPETEAIPFIFLTAKASQNDIRQGIELGADDYLVKPFTRAELLGAITARL 119 Query: 119 QMQK--SKDENQFLD 131 + Q+ ++ + L+ Sbjct: 120 EKQEIINRQTQKRLN 134 >gi|330958140|gb|EGH58400.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 222 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + G+ V +A E + +V+D + G+ Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPY-DLIVLDLGLPGMSGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V L + + I G +AGA+ +L KPF+ E L+ ++ L + Sbjct: 61 EVLEQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 123 SKDENQFLDA 132 L++ Sbjct: 121 GMANQPTLES 130 >gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 228 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + G+ + + E + +++D + + Sbjct: 1 MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDEN-FDVILLDLMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + ++G GA+ +++KPF E L +R L + Sbjct: 60 GMEVARRLREK-KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 118 Query: 121 QKSKDENQ 128 + +++ Q Sbjct: 119 IQIENDQQ 126 >gi|319744078|gb|EFV96455.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 223 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + +K+ G+ A++ EA + E + ++ D M + Sbjct: 1 MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEV-QLIITDIMMPMMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +R +V + + + E M G GA+ +++KP + L ++ L Sbjct: 60 GYQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALL 117 Query: 119 QMQKSKDENQFL 130 + ++Q + Sbjct: 118 RRANIVAQHQLI 129 >gi|313204627|ref|YP_004043284.1| two component, sigma54 specific, transcriptional regulator, fis family [Paludibacter propionicigenes WB4] gi|312443943|gb|ADQ80299.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Paludibacter propionicigenes WB4] Length = 383 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 1/131 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D +R + + V A + + E + + + + D M + Sbjct: 1 MAKILVIDDERSIRNTLKDILEFEKHQVTLAENGKQGLEAA-QNAVFDLIFSDIKMPEMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + + + E + + GA F++KP + L +R + Sbjct: 60 GIELLGHLHEISIEAPIVMISGHGNIETAVECIKKGAFDFIVKPIDLNRLLITVRNALER 119 Query: 121 QKSKDENQFLD 131 E + L Sbjct: 120 NTLVTETKTLK 130 >gi|295090418|emb|CBK76525.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + +F+ G+ + ATS A + E E P+ +V+D M + F Sbjct: 6 ILIVDDETDLLDALQSIFSRAGYKYILTATSGKTALKIWE-EKQPDIIVLDVMMSDMDGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ + V + L + + G GA+ +LLKPF + L F ++ + + Sbjct: 65 -EVLKEIRKTSKVPILMLTARGEADDKFTGFENGADDYLLKPFLPKELLFRVQAILKR 121 >gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291] Length = 222 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ + GF+V + + E + +++D + G Sbjct: 1 MK-VLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEA-TENPFDVVILDIMLPGRS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R + V L + GA+ +L KPF+ L +R L Sbjct: 59 GYEVLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALV 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 224 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 5/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+V+ + ++ + + D G V A + + + ++D + + Sbjct: 3 ILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDY-DLAILDLMLPDLDGVE 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 H+R + L E + G AGA+ +L+KPF L + L + Sbjct: 62 ICRHLRA--ARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRA 119 Query: 122 KSKD 125 + D Sbjct: 120 RGTD 123 >gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 228 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + G+ + + E + +++D + + Sbjct: 1 MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDEN-FDVILLDLMLPELN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + ++G GA+ +++KPF E L +R L + Sbjct: 60 GMEVARRLREK-KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 118 Query: 121 QKSKDENQ 128 + +++ Q Sbjct: 119 IQIENDQQ 126 >gi|260587288|ref|ZP_05853201.1| KDP operon transcriptional regulatory protein KdpE [Blautia hansenii DSM 20583] gi|331083607|ref|ZP_08332718.1| hypothetical protein HMPREF0992_01642 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542483|gb|EEX23052.1| KDP operon transcriptional regulatory protein KdpE [Blautia hansenii DSM 20583] gi|330403818|gb|EGG83370.1| hypothetical protein HMPREF0992_01642 [Lachnospiraceae bacterium 6_1_63FAA] Length = 231 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +++V+ VR + + EA + A P+ +++D + Sbjct: 1 MNKPLIMVVEDDAAVRNLITTTLETHEYRFQEAATGETAILEVATHN-PDVILLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + I ++++ + + + I AGA+ +L KPF+ E L +R Sbjct: 60 MDG-IEVIQKIRTWAKTPIIVISARSEDIDKIEALDAGADDYLTKPFSVEELLARLRVTF 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 223 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+V+ + + G+ V E E + + +V+D + G+ Sbjct: 2 RLLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRA-TEGVHDLVVLDIMLPGMNGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R G DV V L + G GA+ +L KPF+ L ++ L + Sbjct: 61 RVCAALRA--AGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R + + G+ VF+A+ EA E E+E + N +V+D M + Sbjct: 3 NNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEV-NLMVLDIMMPDMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + L +V+ I G GA+ ++ KPFN L +R L + Sbjct: 62 LEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRR 119 >gi|167032462|ref|YP_001667693.1| histidine kinase [Pseudomonas putida GB-1] gi|166858950|gb|ABY97357.1| histidine kinase [Pseudomonas putida GB-1] Length = 785 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G V AT EA E + + +++D +M + + Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELL-QHDDFDLVLMDCNMPVMDGY 723 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +RQ ++ + L E+ AG N +L KPF RE L + Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALI 777 >gi|16330974|ref|NP_441702.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653468|dbj|BAA18382.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 368 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 3/129 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ VR+ + + + V A K+ LP+ ++ D M Sbjct: 1 MPKILIIEDQLEVRQNIEDILSLEDYEVISAPDGETGLALA-KQHLPDLILCDVMMPRVT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +RQ P + L + D G GA+ +L KPF + L A+ Sbjct: 60 GFEVLMSLRQDPNLAVIPFILLTAKADHHAFRQGMELGADDYLTKPFTIDELLHAITTRL 119 Query: 119 QMQKSKDEN 127 + Sbjct: 120 DRHYQRQAM 128 >gi|154246364|ref|YP_001417322.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160449|gb|ABS67665.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 240 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 5/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + +VD +R + G+ A S R E+ P+ +V+D M G Sbjct: 7 IAIVDDHRDIRDLVGKYLTQHGYRTSLADSAAALRRQLERGAAPDLVVLDVMMPGEDGLS 66 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R TD+ V L + I G GA+ ++ KPF+ L ++ + + Sbjct: 67 LCRFLRS---TTDLPVILLTAMAEETDRIVGLEIGADDYVTKPFSPRELLARIKAVLRRV 123 Query: 122 KS 123 S Sbjct: 124 HS 125 >gi|150015084|ref|YP_001307338.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901549|gb|ABR32382.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD +R VF+A EA + EKE + +++D M Sbjct: 1 MFNVLVVDDEKEIRDAIEIYLRGENLKVFKAEDGLEALDILEKEK-IHLIILDIMMPRFD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIRTCLKIRES-QNLPIIMLSAKGEDSDKILGLNVGADDYITKPFNHLELVARVKSQLRR 118 Query: 121 QK 122 + Sbjct: 119 YE 120 >gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 1610 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 4/119 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL + + + +KV + G+ V A + EA E+ P +++D M V F Sbjct: 1482 RLLLAEDNPVNQKVACKMLEKLGYRVDVAGNGQEAVAAHERSRYP-LILMDCQMPEVDGF 1540 Query: 63 --IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R+M + + + AG + ++ KP + L+ + Sbjct: 1541 EATALIRKMEGRSAHTPIVAMTANAMQGDRERCLAAGMDDYIAKPVRPKELQAILDTWL 1599 Score = 86.8 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 6/114 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESME 57 +LLVD VR+ R G A S EA E + + +I+ + Sbjct: 1327 RRILLVDHCDTVRQAMRQELTSHGMNCTVAQSGPEAVELARTAAASQNPFDLALIELHLS 1386 Query: 58 GVLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109 + F A ++Q P + + L G +++L KP + Sbjct: 1387 DMDGFETAALLKQGPATAGIRLIILTTVGRRGDGQTARSIGIDAYLTKPLRQAQ 1440 >gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528] Length = 217 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + + N + A + +A E E + +++D + + Sbjct: 1 MIKILVVEDELPISNLIKLNLNMSNYECKTAFNGEDALEEIE-NDSFDLILLDVMLPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + PLG + V +L + + G RAGA+ ++ KPF L + + + Sbjct: 60 GFTLLEKIKPLG--IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLR 116 >gi|226356935|ref|YP_002786675.1| response regulator CheY [Deinococcus deserti VCD115] gi|226318925|gb|ACO46921.1| putative response regulator, SarP [Deinococcus deserti VCD115] Length = 344 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+VD + K+ + + G V ++ EA + K P+ ++ D M + Sbjct: 1 MPRILVVDDDAAILKLVSVILSRSGHEVRTSSHPVEALDLL-KVFTPDLIISDVVMPYMT 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LEF+ VR+ + + L + + G GA+ +L KPF + L A+ Sbjct: 60 GLEFLEKVREDEKLSALPFMLLSSHAERGDVRRGMNLGADDYLPKPFTPQELNVAIDARL 119 Query: 119 QMQKSKDENQ 128 + + + Sbjct: 120 RRAGLNVQGE 129 >gi|169837195|ref|ZP_02870383.1| two-component response regulator [candidate division TM7 single-cell isolate TM7a] Length = 205 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + V + +A E+ + +V D + G+ F Sbjct: 2 RILVVEDEQNLNDIIVKRLILEKYGVDTCFNGNDALEYIFSTEY-DVIVSDIMLPGIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L E + G GA+ +L+KPF + L +R L + Sbjct: 61 EILKRIREKGIKTPVLLLTALDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRR 118 >gi|149918682|ref|ZP_01907170.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1] gi|149820523|gb|EDM79937.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1] Length = 320 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D S + R R+ G+ V EA +A E ++ P+ +++D M L Sbjct: 7 KILVADDSSVERAAARNALEQAGYAVMEAVDGQQALEVFARD-RPDLVMLDVVMPRLTGL 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ G + V + + G R+GA+ +L KP++ E L + L + Sbjct: 66 ETCRILKAKAQGKYLPVIMVSTRNSVNARVEGLRSGADDYLGKPYDAEELCARVEALLRT 125 Query: 121 QKSKDENQ 128 +K + + Sbjct: 126 RKVISDRE 133 >gi|126664194|ref|ZP_01735186.1| response regulator receiver domain protein [Flavobacteria bacterium BAL38] gi|126623726|gb|EAZ94422.1| response regulator receiver domain protein [Flavobacteria bacterium BAL38] Length = 120 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + F + VF A EA + + P+ +++D M V Sbjct: 1 MKKILIVDDEPNIVMTLEYTFKKSNYEVFIARDGQEALDILKTN-FPDIIILDIMMPMVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + +R+ T V +L + + G GA+++L KPF+ + + + EL Sbjct: 60 GFATLEQIRKDANLTHTKVMFLSAKNKESDIEKGLALGADAYLTKPFSIKKVVEKVEELL 119 >gi|194364065|ref|YP_002026675.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194346869|gb|ACF49992.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 237 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L++D +R+ G+ V +A + E + E + + +++D + + Sbjct: 14 RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDM-DLVILDIGLPDMEGH 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ + V V L + + + GAN ++ KPF + L +R L + Sbjct: 73 EVLEQLRQ---WSQVPVIMLTVRAGETEKVRALDTGANDYVTKPFGTQELMARVRALLRT 129 Query: 121 Q 121 + Sbjct: 130 R 130 >gi|145596986|ref|YP_001161283.1| response regulator receiver [Salinispora tropica CNB-440] gi|145306323|gb|ABP56905.1| response regulator receiver [Salinispora tropica CNB-440] Length = 228 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 5/119 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +LLV+ + + R GF V + L P V+D ++ G E Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARR-LRPVVCVLDIALPGLPGTE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G V +L D I G GA+ ++ KPF+ L +R + + Sbjct: 70 ICRRLR--EAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRR 126 >gi|71083864|ref|YP_266584.1| phosphate regulatory protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062977|gb|AAZ21980.1| phosphate regulatory protein [Candidatus Pelagibacter ubique HTCC1062] Length = 226 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFI 63 +V+ + + ++ G+ V + + E E +K L P+ +++D + +E Sbjct: 7 IVEDEQPIITLVKYNLEKEGYKVSSSDNGNEGIEDIKK-LFPDLVLLDWMLPDFSGVEIC 65 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +++ ++ + L + + E I G +GA+ ++ KPF+ L ++ L + K Sbjct: 66 KILKKEKKFKEIPIIMLTAKGEDEDKIKGLNSGADDYITKPFSFPELLARIKALLRRSK 124 >gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 219 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 +L D + + + G+ V A + +A + +E P+ V+D M + F Sbjct: 1 MLADDEPHILQFLELGLINEGYEVRTAENGSDALDLA-REFRPHVAVLDVMMPEMNGFEV 59 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ V L + D + + G + GA+ +++KPF+ L + + Q Sbjct: 60 CQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYIVKPFSFNELLARIEARLRNQ 116 >gi|307824965|ref|ZP_07655187.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] gi|307734012|gb|EFO04867.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 659 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + V G+ + A E + + P+ +++D M G+ F Sbjct: 15 TILIVDDTPTNLGVVVESLESRGYRLVVAQDGMEGLQRA-AFVKPDLILLDVMMPGMDGF 73 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 H++ ++ V ++ + E I G + G ++ KP + + + + Sbjct: 74 EVCRHLKANADTAEIPVIFMTALAETEHKITGFKVGGVDYITKPMQIDEVIARVGTHLNL 133 Query: 121 QKSKDENQFLDA 132 + + + Q +A Sbjct: 134 KTMQRQLQVQNA 145 >gi|302535152|ref|ZP_07287494.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444047|gb|EFL15863.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 237 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L V+ ++R+ GF+V E P+ ++D + G+ Sbjct: 4 THVLFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRAN-RPDIALLDVMVPGMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 63 VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|228938514|ref|ZP_04101122.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228821112|gb|EEM67129.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 203 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 19 HLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMPLGTDVF 76 ++FG+ EA + EA + E + +++V+D M + +R+ +DV Sbjct: 1 MYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSVCKEIRK---TSDVP 56 Query: 77 VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLD 131 + +L + + + G R GA+ +++KPF+ L M + + +++ + + Sbjct: 57 IIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQ 111 >gi|256830761|ref|YP_003159489.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256579937|gb|ACU91073.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 377 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 8/137 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ + G+ TS EA E P+ +++D M Sbjct: 12 ILIVDDEPLNIRLLDIVLKKNGYRTLSCTSGPEA-RALAAEHSPDLILLDVLMPDEDGYA 70 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 A ++Q +D+ + ++ D + G G F+ KPF + + ++ + Sbjct: 71 TCALLKQQSQTSDIPIIFISALTDTSSKVRGLEVGGVDFISKPFEKAEVLARVKVHLKLR 130 Query: 120 ---MQKSKDENQFLDAI 133 + + Q L + Sbjct: 131 FTYRALIEAQAQRLAQV 147 >gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM 16841] gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM 16841] Length = 227 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+ D +R + R + + V EA A + E P ++D M + Sbjct: 4 KILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAE-QPALCILDIMMPKIDGY 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ +++ V L + + I G GA+ +L KPFN + + Sbjct: 63 HVLQQIRKE---SNIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNIRR 119 >gi|222055335|ref|YP_002537697.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221564624|gb|ACM20596.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 234 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ + + V S EA E + E + +++D + G+ F+ Sbjct: 8 ILLVEDEIHLARGICFNLELENLRVSHVESGEEALERVKFE-RFDLIILDVMLPGIDGFV 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + L V V L D IAG GA+ +L KPFN + ++ + + Sbjct: 67 VCKKVRELDARVPVLMLTARSDERDRIAGLAGGADDYLTKPFNLDEFLLRVKGMLRR 123 >gi|210616623|ref|ZP_03291153.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787] gi|210149733|gb|EEA80742.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787] Length = 220 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 57/130 (43%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++L+++ +++ L G+ VF+A + + E +K + + +++D M Sbjct: 1 MKTILIIEDDIMIQNALGELLRVSGYQVFQAYNGIDGVEKFKKNKV-DLILLDIMMPEKD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + VR+M + V + L + + + A+ +++KP++ + + + Sbjct: 60 GFDVCREVREM---SQVPIIILTALDEEDAEVKCFDLKADDYIVKPYSVRVVLKRIEAIF 116 Query: 119 QMQKSKDENQ 128 + ++ + Sbjct: 117 RRANVGNQQE 126 >gi|171059270|ref|YP_001791619.1| response regulator receiver modulated metal dependent phosphohydrolase [Leptothrix cholodnii SP-6] gi|170776715|gb|ACB34854.1| response regulator receiver modulated metal dependent phosphohydrolase [Leptothrix cholodnii SP-6] Length = 375 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + V L + V A S A P +++D M G+ Sbjct: 6 ILIVDDNPENLTVLGELLRSH-YQVRAANSGPSALRLAALVPRPQLVLLDVMMPGMDGYE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R D+ V + E G GA ++ KP + +R +++ Sbjct: 65 VLRLLRADESTRDIPVIFTTSLDATEDEELGFTLGAVDYITKPLRPAIVLARVRTHLELK 124 Query: 122 KSKDENQ 128 +++D Q Sbjct: 125 QARDRLQ 131 >gi|170757144|ref|YP_001781246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122356|gb|ACA46192.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + G VF+A +A E + + +++D M + Sbjct: 5 KVLIVDDEDEIRDAIEIYLRNEGITVFKAKDGIDALMLLEDQD-IHLIIMDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|152994394|ref|YP_001339229.1| response regulator receiver modulated metal dependent phosphohydrolase [Marinomonas sp. MWYL1] gi|150835318|gb|ABR69294.1| response regulator receiver modulated metal dependent phosphohydrolase [Marinomonas sp. MWYL1] Length = 360 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + V +D + + A + +A P+ +++D M + Sbjct: 19 TVLIVDDTPENIDVLVASLSDE-YTIKVALNGMKALSIASLSPRPDLILLDVMMPEMDGY 77 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P+ ++ + ++ + D + G GA +++KP + +R +R Sbjct: 78 DVCERLKSNPVTANIPIIFVTAKHDIKDEEKGLSLGAVDYIIKPISPPIVRARVRTHL-- 135 Query: 121 QKSKDENQFLD 131 D+N+ L Sbjct: 136 -ALYDQNRQLQ 145 >gi|78213360|ref|YP_382139.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78197819|gb|ABB35584.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 255 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 4/126 (3%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M + LVD +RK+ D G+ V V + E + P+ +V+D + Sbjct: 15 MSRDTMIWLVDDDPELRKMVGTYLIDQGYDVRSLCDVKQFEARLECQ-RPDLVVLDLMLP 73 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 G A R G D+ V L D I G GA+ +L KPF L + + Sbjct: 74 GDDGLTALRRLRDAGDDLPVVMLTARADGVDRIIGLEQGADDYLAKPFLPRELTARIEAV 133 Query: 118 PQMQKS 123 + + + Sbjct: 134 LRRRNA 139 >gi|333007401|gb|EGK26881.1| KDP operon transcriptional regulatory protein kdpE [Shigella flexneri VA-6] Length = 225 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRSFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|330974194|gb|EGH74260.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 229 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + GF V A + + ++ P+ +++D + Sbjct: 4 KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ VR +D V + D + + R GA+ +++KP+N + + + + Sbjct: 63 TDVLSAVR---RCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLR 119 Query: 120 MQKSKDENQF 129 + N+ Sbjct: 120 RSQQSGNNER 129 >gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 9/135 (6%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + + R D G+ V A E +K+ + +++D + + Sbjct: 1 MSKILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRY-DLILLDIMLPKID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +++ V + E+ + G A+ ++ KPF+ L + + Sbjct: 60 GFAVCELIRKE---SNIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVL 116 Query: 119 QMQKS---KDENQFL 130 + ENQ L Sbjct: 117 RRSGRGAKAGENQKL 131 >gi|320175885|gb|EFW50964.1| DNA-binding response regulator KdpE [Shigella dysenteriae CDC 74-1112] Length = 225 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|309806615|ref|ZP_07700611.1| response regulator receiver domain protein [Lactobacillus iners LactinV 03V1-b] gi|312870847|ref|ZP_07730952.1| response regulator receiver domain protein [Lactobacillus iners LEAF 3008A-a] gi|312873582|ref|ZP_07733629.1| response regulator receiver domain protein [Lactobacillus iners LEAF 2052A-d] gi|312875747|ref|ZP_07735742.1| response regulator receiver domain protein [Lactobacillus iners LEAF 2053A-b] gi|308166920|gb|EFO69103.1| response regulator receiver domain protein [Lactobacillus iners LactinV 03V1-b] gi|311088739|gb|EFQ47188.1| response regulator receiver domain protein [Lactobacillus iners LEAF 2053A-b] gi|311090835|gb|EFQ49232.1| response regulator receiver domain protein [Lactobacillus iners LEAF 2052A-d] gi|311093537|gb|EFQ51876.1| response regulator receiver domain protein [Lactobacillus iners LEAF 3008A-a] Length = 229 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + A EA + +++D M + Sbjct: 1 MVKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMDPSITCIILDIMMPEMS 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ ++V + + I G GA+ ++ KPFN + +R L + Sbjct: 61 GL-DLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRR 119 Query: 121 QK 122 + Sbjct: 120 SE 121 >gi|256851855|ref|ZP_05557243.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661884|ref|ZP_05862794.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282931967|ref|ZP_06337431.1| regulatory protein VanR [Lactobacillus jensenii 208-1] gi|297205479|ref|ZP_06922875.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615813|gb|EEU21002.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547353|gb|EEX23333.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281303909|gb|EFA96047.1| regulatory protein VanR [Lactobacillus jensenii 208-1] gi|297150057|gb|EFH30354.1| response regulator [Lactobacillus jensenii JV-V16] Length = 228 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++VD + ++ + G+ A S EA +++D M + Sbjct: 1 MK-IIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPQMT 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I ++++ +D+ + + + I G GA+ +++KPFN + +R L + Sbjct: 60 G-IDVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118 Query: 121 QKSK 124 + K Sbjct: 119 SQKK 122 >gi|226309940|ref|YP_002769834.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092888|dbj|BAH41330.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L V+ + + + D G+ V A + E+ + + LV+D M G+ Sbjct: 3 ILAVEDEKALLQTIAGVLADEGYQVDMADRGDDGLLLAERGIY-DLLVLDIMMPGMDGLS 61 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 G V +L + E + G AGA+ +L+KPF E L +R L + Q Sbjct: 62 LVRTLRTKGIMTPVLFLTAKDSVESRVEGLDAGADDYLVKPFAAEELTARVRALLRRQGK 121 Query: 124 KD 125 ++ Sbjct: 122 QN 123 >gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 228 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + G+ V A + V+D + + Sbjct: 7 RVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALA-TSTAYDAAVVDIMLPELDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + V +L E + G +AG + +L KPF L ++ L + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 123 SKDENQFLDA 132 E L A Sbjct: 126 RSPEATRLSA 135 >gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + +++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX] gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX] Length = 222 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V E + + + LV+D + + Sbjct: 1 MTCVLLAEDDASISEPLARALRREGYSVDVTVDGMETLDRA-RSGDIDLLVLDLGLPELD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + L D + G AGA+ ++ KPF L +R L + Sbjct: 60 GLEVARRLRSEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ R GF A + + E + +++D + G Sbjct: 1 MKKILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEE-FDLILLDVMLPGKD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + ++ + + + + I G GA+ +++KPF+ L + Sbjct: 60 GFKVCQEIRAV---KEIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHI 116 Query: 119 QMQK 122 + Sbjct: 117 SRYE 120 >gi|91975146|ref|YP_567805.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91681602|gb|ABE37904.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 240 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +RK+ R G+ V EA++ A E ++ P +++D + Sbjct: 7 KILIVDDEPPIRKLLRMGLGTQGYEVLEASNGKIALELLKQG--PALIILDLGLPDIQGH 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R V + L D + GA+ +L KPF + L MR + Sbjct: 65 ELLRMIRGR--NDSVPIVVLSSRGDEAGKVEALDLGADDYLTKPFGMDELLARMRAALRH 122 Query: 121 Q 121 Q Sbjct: 123 Q 123 >gi|67925918|ref|ZP_00519199.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67852236|gb|EAM47714.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 157 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M ++LLV+ S +K+ + G+ V A +A E E + +V+D M + Sbjct: 37 MRAVLLVEDSPAQQKMISTILTKNGWQVMIAEDGIQALESI-NESSLDLIVLDIVMPKMN 95 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P +V + + + G + GA++++ KPF L +++L Sbjct: 96 GYEVCRRIKTNPKTQNVPIVMCSSKGEEFDRYWGMKQGADAYIAKPFEDVELIGTIQQLL 155 Query: 119 Q 119 + Sbjct: 156 R 156 >gi|329896811|ref|ZP_08271727.1| Adenylate cyclase [gamma proteobacterium IMCC3088] gi|328921566|gb|EGG28946.1| Adenylate cyclase [gamma proteobacterium IMCC3088] Length = 452 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD + R V L + G V+ A S A E + + +++D SM G+ Sbjct: 100 SILVVDDQNDNRAVLNRLLSRVGHTVYTADSGEAALEQLSTQ-AIDVVLLDLSMPGMGGK 158 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ P + V + + + ++ AGA+ +L KPFN L + + Sbjct: 159 TALTKIKADPKLRSIPVIVISGHQELDSVVECITAGADDYLFKPFNSVLLHARIAAGLER 218 Query: 121 QKSKDEN 127 ++ D Sbjct: 219 KQWHDRE 225 >gi|323484018|ref|ZP_08089390.1| response regulator [Clostridium symbiosum WAL-14163] gi|323693384|ref|ZP_08107598.1| response regulator [Clostridium symbiosum WAL-14673] gi|323402659|gb|EGA94985.1| response regulator [Clostridium symbiosum WAL-14163] gi|323502533|gb|EGB18381.1| response regulator [Clostridium symbiosum WAL-14673] Length = 227 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M + LV+ + K L GF V A + EA L + ++D ++ Sbjct: 1 MTRIFLVEDDKAIAKNLTLLLRSEGFTVSHAATRGEA-SAMLAGNLFDLALVDIALPDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++ + V +L D ++ G GA+ ++ KPF L +R Sbjct: 60 GFTVCTEIKER---YQIPVLFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRAAL 116 Query: 119 QMQKSKDE 126 + Q+ + Sbjct: 117 RKQERAGQ 124 >gi|300866251|ref|ZP_07110963.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335770|emb|CBN56123.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 362 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ ++R+ L + F A + E ++ P+ ++ D M + Sbjct: 1 MPKILVIEDEELIRENILELLDAEEFEALGAANGKIGVEMAAQQ-QPDLILCDVMMPELD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +A +R PL + +L + G GA+ ++ KP L A+ Sbjct: 60 GYSVLAALRSHPLTATIPFIFLTARAEKADTRKGMELGADDYIPKPCTPAELLAAIATRL 119 Query: 119 QMQ 121 Q Q Sbjct: 120 QKQ 122 >gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + E + +++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKENSLPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|295693262|ref|YP_003601872.1| response regulator [Lactobacillus crispatus ST1] gi|295031368|emb|CBL50847.1| Response regulator [Lactobacillus crispatus ST1] Length = 180 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + +V G+ V + +A E KE + +++D M + Sbjct: 1 MK-ILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHA-KENSYDVIMLDIMMPVMD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + G ++ L + + + + G +GA+ +L KPF+ + L +R + Sbjct: 59 GITALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERR 118 Query: 121 Q 121 + Sbjct: 119 E 119 >gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|256821572|ref|YP_003145535.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256795111|gb|ACV25767.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 232 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL D + ++ GF V A A + + +V+D + + Sbjct: 1 MPKLLLADDDTELCQLLHEYLTQEGFEVALAHDGATA-AKLILDHSFDLMVLDVMLPNLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + + V + L D I G GA+ ++ KP N L +R + + Sbjct: 60 GF-DVLKTVRKESQVPILMLTARGDEIDRIVGLELGADDYIAKPCNPRELTARIRTILRR 118 Query: 121 QKS 123 ++ Sbjct: 119 TEN 121 >gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08] gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07] gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08] gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + GF +++A +A E E + +++D M + Sbjct: 1 MYNILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEII-TENDIHLILMDIMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A V+ ++ + + + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIKATVKIREE-RNIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLRR 118 >gi|218885321|ref|YP_002434642.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756275|gb|ACL07174.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 528 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL++D R + R + D G+ V EA S E E + N +++D M G+ Sbjct: 1 MKRLLVIDDEPGHRLMVRAVMEDSGWSVEEAGSGEEGLEHL-AQDRVNVVLLDMRMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + V L + + GA +L KP + E L + + Sbjct: 60 GQETLARIQEMYPGLPVVMLTAFGTVGSAVVAMKKGAFDYLTKPADNEELTAVLEKAWDF 119 Query: 121 QKSKDENQFL 130 + +EN+ L Sbjct: 120 GRLLEENENL 129 >gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LLL++ +R + G V A + + E +E P+ +V+D + G+ Sbjct: 1 MPFLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + L D ++ G +GA+ +++KP L +R + Sbjct: 60 GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116 Query: 119 QMQKSKDEN 127 + + + + Sbjct: 117 RRGERESTD 125 >gi|182435566|ref|YP_001823285.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464082|dbj|BAG18602.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1840 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1720 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1779 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+MP + + L + GA+ ++ KP + + L M + Sbjct: 1780 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1837 >gi|159184131|ref|NP_353073.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159139468|gb|AAK85858.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 241 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ LVD + G+ V T A + P + D M + Sbjct: 1 MQTIALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARP-PQLAIFDIKMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ V +L + + + G + GA+ F+ KPF++ L ++ + + Sbjct: 60 GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118 Query: 121 QKSKD 125 S++ Sbjct: 119 ASSRE 123 >gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 219 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + G+ V A + + E + +++D + + F Sbjct: 2 RILVVEDDESLGSGLCTALGQDGYTVDWLKDGLHASQALQSEH-FDLVILDVGLPRMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 L +++ V L E I G AGA+ +L+KPF + L+ +R L + Sbjct: 61 SVLKNMRLLKSEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIRRAS 120 Query: 123 SKD 125 + Sbjct: 121 GRA 123 >gi|312135502|ref|YP_004002840.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775553|gb|ADQ05040.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 234 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++ +VD + + G+ V S EK P+ +++D + Sbjct: 5 TVYVVDDEKDILDLVSEYLTQKGYAVKTFGSGESFLGEFEKSE-PDIVILDIMLPDIDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +DV + L + + + G G++ ++ KPF+ L +R++ + Sbjct: 64 EICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIRKILRR 120 Query: 121 QK 122 K Sbjct: 121 VK 122 >gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 1098 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 7/137 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ D + ++ + + G+ V A E E + L++D M Sbjct: 694 KILIADDERVNLQLLSNHLSLQGYYVDTAKDGDEVLHKVESGNY-HLLILDMMMPRKSGY 752 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ ++ V L + + +GAN +++KP + L + L ++ Sbjct: 753 EVCQQLRKRFSLLELPVLILTAKNQEYDKVTAFDSGANDYIVKPCEKRELLSRTKTLIEL 812 Query: 121 ----QKSKDENQFLDAI 133 +K K++ + LD + Sbjct: 813 SLAVRKIKEQMRELDDV 829 >gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 226 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 50/133 (37%), Gaps = 1/133 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ ++ + + L F V + + + ++ + +++D + + Sbjct: 1 MSKILIIEDDFMIAESTQTLLRYQQFDVVWVNNGFDGLKQL-QQYPFDVVLLDLGLPMMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 L + V + + + G GA+ +L+KP+ + L + L + Sbjct: 60 GMQVLKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRR 119 Query: 121 QKSKDENQFLDAI 133 + + + + Sbjct: 120 SGALKQQKQSQTL 132 >gi|239933024|ref|ZP_04689977.1| two-component system sensory histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1332 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + + + +++D M + Sbjct: 1212 RTILVVDDDARNLFALSGILELHGFRVLHAENGRKGIDQLVNNPDVALVLMDVMMPELDG 1271 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R MP ++ + + + +GA+ ++ KP + + L +R Sbjct: 1272 YAATAEIRSMPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1330 Score = 34.4 bits (79), Expect = 6.0, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 7/61 (11%) Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA---G-ANSFLLKPFNRETLRFAMREL 117 F+ +R V V + RA G A FL + + LR + Sbjct: 1122 FLEALRGDSALASVPVLVHSGHRADAAVEEALRARTEGTALEFLS---SLDELRERIALH 1178 Query: 118 P 118 Sbjct: 1179 L 1179 >gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 231 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + VF+ + EA E +K + + ++D + V Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-VLDLAILDIMLPDVSGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + L + I G GA+ ++ KPF L ++ + Sbjct: 63 NICQKIRDKYNY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 223 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G++V +A E F + +++D + + Sbjct: 2 RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPELDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 123 SKDENQFL 130 ++ + Sbjct: 121 GHSSSEII 128 >gi|108761106|ref|YP_632371.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108464986|gb|ABF90171.1| sigma-54 dependent DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 450 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ D VR G V A EA ++ + + L+ D M G+ Sbjct: 1 MARILVADDEEGVRSFLAEALEYEGHSVTTAADGEEAARLMARQGV-DLLLTDLRMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELPQ 119 + DV V L E +A +AGA FLLKP + LR + + Sbjct: 60 GLTLLRKVREEQPDVEVVVLTAVGTVESAVAAMKAGAFDFLLKPVGSPAELRLTVARALE 119 Query: 120 MQKSKD 125 + + Sbjct: 120 RRALLN 125 >gi|154246098|ref|YP_001417056.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160183|gb|ABS67399.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 261 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD +RK+ GF V A E E + +++V+D + Sbjct: 27 THILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGREMEEKLATQ-RIDFVVLDLMLPDASG 85 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+ +R + V L + I G GA+ +L KPFN L +R + + Sbjct: 86 LDLCRALRNRSK---IPVILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLR 142 Query: 120 MQKSKD 125 + + Sbjct: 143 RTGAAE 148 >gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] Length = 236 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD +R++ GF V A + EA E ++ P+ +V+D + G Sbjct: 8 RVLVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRP-PDVVVLDVMLPGADGF 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R + DV V +L E + G R G + ++ KPF+ + ++ L + Sbjct: 67 EILQLLRARAV--DVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRR 124 Query: 121 QK 122 + Sbjct: 125 AR 126 >gi|237711729|ref|ZP_04542210.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|265753147|ref|ZP_06088716.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|229454424|gb|EEO60145.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|263236333|gb|EEZ21828.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1343 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +LLLV+ + +R F V A + EA + + ++ D M Sbjct: 1077 MKGYTLLLVEDNESMRSFIFERLEVL-FTVETAVNGQEALDVLRSNH-IDLVISDIMMPV 1134 Query: 59 V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + E ++ + V +L + D E I G + GA +++ KPF+ L+ + Sbjct: 1135 MNGYELCKEIKGDIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKSQILS 1194 Query: 117 LPQMQKSKDE 126 L ++ + E Sbjct: 1195 LLSNRRKERE 1204 >gi|190573243|ref|YP_001971088.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011165|emb|CAQ44774.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 246 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V +A A + +V+D M G Sbjct: 7 ILVVDDDSEIRQMLADYLQRNGLRVSQA-DGGRAMRALMDTHAVDLVVLDVMMPGEDGLS 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++R V V L D I G GA+ ++ KPF+ L + + + Sbjct: 66 LCRNLRA-GKHRAVPVVLLTARDDETDRIIGLEMGADDYVTKPFSSRELLARINAVIRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 QMLPPN 130 >gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15] gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15] Length = 247 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + R + G+ V A + +V+D + G Sbjct: 18 RVLVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGY-DAVVLDVMLPGFPGF 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R G +V V L + + G +GA+ +L KPF+ E L +R L + Sbjct: 77 ELCRRLR--ERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRR 134 >gi|83592618|ref|YP_426370.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83575532|gb|ABC22083.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 249 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ + R+ G+ V + + + +++D + GV Sbjct: 6 ILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDS-MRKVFSQQTVDLILLDIRLPGVDGL- 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ---- 119 +R++ ++V V + + D I GA+ ++ KPFN L + L + Sbjct: 64 QLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123 Query: 120 -MQKSKDENQ 128 + S+DENQ Sbjct: 124 AREASEDENQ 133 >gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 220 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+V+ + G+ V E E + +++D + G+ Sbjct: 2 RLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRA-TEGPYDLVILDIMLPGMNGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R G +V + L + G GA+ +L KPF+ L ++ L + Sbjct: 61 RVCAALRA--AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 227 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +LLV+ +R+ GF V A E + +E+ + +ID + + + Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGL-YMGREVPFDVAIIDLGLPKMSGM 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E I +R G + V L ++ + G + GA+ +L+KPF+ E L + L + Sbjct: 61 ELIKALR--DEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRR 118 >gi|260663755|ref|ZP_05864642.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|260551704|gb|EEX24821.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 245 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ A + +A + +++D M + Sbjct: 18 KILIVDDDKEIVQLLEIYARNEGYEPVSAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 77 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +RQ+ + + + L + I G GA+ ++ KPFN + ++ L + + Sbjct: 78 -DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136 Query: 123 SKDEN 127 ++ N Sbjct: 137 NQVTN 141 >gi|146338495|ref|YP_001203543.1| OmpR family two-component response regulator [Bradyrhizobium sp. ORS278] gi|146191301|emb|CAL75306.1| two-component response transcriptional regulator (OmpR family) [Bradyrhizobium sp. ORS278] Length = 235 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 8/130 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62 LL+++ +R + R GF V A + P+ +V+D + G Sbjct: 7 LLIIEDDIEIRSLLRDHLAREGFRVD-VGDGGAALDRFRNTFGDPDLVVLDIMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + L + D I G GA+ +L KPF+ L +R + + Sbjct: 66 SICRRLRA---ASRVPILMLTAKGDEIDRIVGLEMGADDYLPKPFSPRELVARIRAILRR 122 Query: 121 QKSKD-ENQF 129 + EN+ Sbjct: 123 AEPAPLENRR 132 >gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 8/134 (5%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M + +L+V+ ++++ + + V A+ E K+ + +++D M Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQS-FDLILLDVMMPN 59 Query: 59 VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F +R ++V + L + E + G G + ++ KPF+ L + Sbjct: 60 LNGFEVSKMIRSQ---SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEA 116 Query: 117 LPQMQKSKDENQFL 130 + + K+ N L Sbjct: 117 VLRRSYDKNVNNHL 130 >gi|303328169|ref|ZP_07358608.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3] gi|302861995|gb|EFL84930.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3] Length = 238 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 4/123 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 SLLL++ + + G+ + A E + +V+D + G+ Sbjct: 4 SLLLIEDNEDILANLYAYLEPLGYELDCARHGRTGLSMAL-EGRFDCIVLDVMLPGLDGV 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++R+ + V V L + G AGA+ +L+KPF + L +R L + Sbjct: 63 SLCRNLRE-EHHSAVPVLMLTARDTVADRVRGLEAGADDYLVKPFALKELEARIRALLRR 121 Query: 121 QKS 123 + Sbjct: 122 GRL 124 >gi|283851785|ref|ZP_06369063.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572905|gb|EFC20887.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 310 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 6/117 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + I R + L + G + A EA E E + +++D SM + Sbjct: 189 KILLAEDNPINRLFLQELLRNEGHSITYAADGQEALEALRTE-AFDIVLMDISMPRMDGI 247 Query: 63 IAHVRQMPL-----GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 A R + + L +AG + +L KP + L+ + Sbjct: 248 EATRRIRESVSGKINAKIPIVALTAHAFRVDAERFLKAGMDGYLSKPIDPAKLKEIL 304 >gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134] gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134] gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] Length = 231 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + VF+ + EA E +K + + ++D + V Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-VLDLAILDIMLPDVSGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + L + I G GA+ ++ KPF L ++ + Sbjct: 63 TICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|182419626|ref|ZP_02950871.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237665786|ref|ZP_04525774.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376516|gb|EDT74093.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237658733|gb|EEP56285.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 249 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + ++ + G+ VF+A + + +KE + +V+D M G+ F Sbjct: 22 NVLIIDDEVEIVELMEVYLVNEGYKVFKAYNGNDGINIVDKEK-IDLIVLDIMMPGIDGF 80 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++ + + + I G GA+ +++KPFN ++ + Sbjct: 81 QICMKIRKD---YNIPIIMISAKSQDMDKIQGLSVGADDYMVKPFNPMEFIARVKSQIRR 137 >gi|158340437|ref|YP_001521793.1| response regulator receiver, CheY-like protein [Acaryochloris marina MBIC11017] gi|158310678|gb|ABW32292.1| response regulator receiver, CheY-like protein [Acaryochloris marina MBIC11017] Length = 410 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+ D + + G+ +++A S EA +LP+ +++D +M + + Sbjct: 145 ILMADDEPKNLALLTDVLEQEGYEIWQADSGAEAL-RVAGMVLPDLILLDINMPDMQGYD 203 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V ++ + + G + ++ KPFN + + +++ Sbjct: 204 VCQQLKANAKTKLIPVIFVSALDETWDKVKAFSVGGSDYITKPFNTLEVIVRIENQLEIR 263 Query: 122 KSKDEN 127 + +D+ Sbjct: 264 QIQDQM 269 Score = 124 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIA 64 VD + + + + V++A+S E + K +LP+ +++D +M + Sbjct: 2 VDDQPNIMNLLTSIMEQDEYEVWQASSGAEGLQMAAK-VLPDLILLDVNMPDMDGYTVCQ 60 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 ++ P T + + ++ + + G G + ++ KPFN + + + ++++ + Sbjct: 61 QLKADPQTTAIPIIFVSALDETWDKVKGFSVGGSDYITKPFNTLEVIVRIEDQLKIRQIQ 120 Query: 125 DEN 127 D+ Sbjct: 121 DQM 123 Score = 122 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+VD + + G+ +++A S EA +LP+ +++D +M + + Sbjct: 291 ILMVDDEPKNLALLTDVLEHDGYEIWQADSGSEAL-RVAGMVLPDLILLDINMPDMQGYD 349 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V ++ + + G + ++ KP L M+ Q+ Sbjct: 350 VCQQLKANAKTKLIPVIFVSALDETWDKVKAFSVGGSDYINKPIQIVELMARMKHQLQI 408 >gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114] gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114] Length = 1126 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 LL+ D + +V G+ V A E + E+E ++D M G+ E Sbjct: 721 LLVADDEPVNLQVLTSFLKLEGYRVKVANDGPETLKVFEEEKPELL-LLDVMMPGMSGYE 779 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+ +++ + L + I G +GAN +L KPFN++ L ++ + Sbjct: 780 VCQSLRETYSHSELPIIMLTALNQTQDRIRGFESGANDYLSKPFNKQELAARIKAHLKAS 839 Query: 122 KSK---DENQFLD 131 K++ EN L Sbjct: 840 KAELFLSENDRLQ 852 >gi|89072110|ref|ZP_01158706.1| putaive two-component response regulator [Photobacterium sp. SKA34] gi|90580393|ref|ZP_01236199.1| putative two-component response regulator [Vibrio angustum S14] gi|89052211|gb|EAR57662.1| putaive two-component response regulator [Photobacterium sp. SKA34] gi|90438302|gb|EAS63487.1| putative two-component response regulator [Vibrio angustum S14] Length = 224 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + F G + A + + K + +++D + + Sbjct: 1 MKKILLVEDNREIAGIIFDFFESLGMELDFADNGELGLQLAMKNN-FDIILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L + M+ G + GA+ ++ KPF+ + L M L + Sbjct: 60 GLTVCNRLRDAGNNTPVLMLTALDNKSDMLDGYKHGADDYMTKPFDLDILEARMNALVKR 119 Query: 121 QK 122 Sbjct: 120 YH 121 >gi|310828574|ref|YP_003960931.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308740308|gb|ADO37968.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 232 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M ++++D + + GF A+ E E E E P +V+D M G+ Sbjct: 1 MKNRIIIIDDDPKLCALLEKCVTCDGFEAACASDGREGLEKLE-EGSPVLVVLDVMMPGL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R++ + V V L D + G R GA+ +L KPF+ + L + Sbjct: 60 DGF-EVLRKIRETSAVPVLMLTARDDNIDKVYGLRLGADDYLTKPFDINEFSARVHSLVR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|237807962|ref|YP_002892402.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237500223|gb|ACQ92816.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 231 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+++ +R+ GF VFEA ++ P+ +++D + Sbjct: 7 NILIIEDEQQIRRYLGAALLSDGFKVFEADTLQRGL-IEAATRKPDLVILDLGLPDGDGN 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 FI +RQ + + + L D + GA+ +L+KPF L +R + Sbjct: 66 QFIEEIRQ---WSQIPIIILSARSDERDKVKALNNGADDYLVKPFGIAELLARVRANLRR 122 Query: 121 QKSKDENQ 128 + + EN+ Sbjct: 123 RNADRENE 130 >gi|215433453|gb|ACJ66692.1| sigma-54 dependent DNA-binding response regulator [Myxococcus fulvus HW-1] Length = 471 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD R+ + N+ G+ V EA + EA E P ++ D M + Sbjct: 4 QRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARI-GEFSPAVVLTDVRMPQMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G+D + E + ++GA++FL+KP + + + + ++ + + Sbjct: 63 LTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLIKPLDADQVLVTLGKVLEKR 122 Query: 122 KSKDENQFL 130 + E + L Sbjct: 123 SLRQEAEAL 131 >gi|319951942|ref|YP_004163209.1| two component, sigma54 specific, transcriptional regulator [Cellulophaga algicola DSM 14237] gi|319420602|gb|ADV47711.1| putative two component, sigma54 specific, transcriptional regulator [Cellulophaga algicola DSM 14237] Length = 387 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+++ +R+V + ++ + V EA + E +KE + ++ D M Sbjct: 1 MSRILVIEDEAAIRRVLVKILSEESDTYTVEEAEDGLKGLEAVKKEDY-DLVLCDIKMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + ++ + D + + R GA ++ KP + L +R Sbjct: 60 MDGVEVLEAAKKIKPEIPFIMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLTTVRNAL 119 Query: 119 QMQKSKDENQFLD 131 ++ EN+ L Sbjct: 120 DRKELVVENKILK 132 >gi|242239998|ref|YP_002988179.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] gi|242132055|gb|ACS86357.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 231 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + ++ GF V A A + + E +V+D S+ + F Sbjct: 9 RLLLVEDHDELAHWLEKALSESGFAVDRAGDGMTAEQLLQLETY-TLMVLDVSLPKMDGF 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G ++ V L D + G GA+ +L KPF+ L +R L + + Sbjct: 68 SVLARLRKRGQNLPVLLLTARTDVADRVRGLNLGADDYLAKPFDVAELEARLRALLRRSQ 127 Query: 123 SKDE 126 + Sbjct: 128 GLAQ 131 >gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 227 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V G+ V EA + +++D M + + Sbjct: 2 RVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEAL-LYIDGATYDIILMDIMMPKLNGY 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + V +L + E + G GA+ +++KPF+ + L +R L + Sbjct: 61 EVLEKMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRRNH 120 Query: 123 SKDENQFLDA 132 N+ A Sbjct: 121 GSVSNELRVA 130 >gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 1/129 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLV+ +R + V EA++ E + E P V+D + G+ Sbjct: 1 MNKILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIEN-PKIAVLDVMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + L + I G GA+ +++KPFN + ++ L + Sbjct: 60 GFKVCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRR 119 Query: 121 QKSKDENQF 129 +D+++ Sbjct: 120 LGDEDKDKL 128 >gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 11/135 (8%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + + G V A E ++E P+ +++D M + Sbjct: 1 MSKILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQE--PDLIILDIMMPKMD 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R L V +L + I G G + ++ KPF L + Sbjct: 59 GFEVCQAIRDDVL---CPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANL 115 Query: 119 QMQKSK----DENQF 129 + +K +EN+ Sbjct: 116 RREKRSQYINEENKR 130 >gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 292 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD + +V G+ V +T A + + P+ +++D M G+ F Sbjct: 10 TILLVDDAPDNLRVLHDALQQQGYRVLVSTDGQSALDSVQLMP-PDVIILDARMPGIDGF 68 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ V ++ D E ++ G +AG ++ KP E L + Q Sbjct: 69 ETCKRLKNDLTTRDIPVIFMTGLSDTEYIVQGFQAGGVDYVTKPVVIEELLVRITTHMQR 128 Query: 121 QKS 123 + Sbjct: 129 AQL 131 >gi|254429432|ref|ZP_05043139.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195601|gb|EDX90560.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 227 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 15/144 (10%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + ++ + + S A +E +++D + Sbjct: 1 MSRILIVEDEPRLSQLVADYLQHAHYQTEQTDSAKAAIALA-REQSFQAVLLDLMLPDGD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +RQ ++V + + VD + G GA+ ++ KPF+ L ++ + Sbjct: 60 GMEVCKAIRQH---SNVPILMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVL 116 Query: 119 QM---------QKSKDENQFLDAI 133 + + + + + +AI Sbjct: 117 RRANPEPTEQEHELQLDEERYEAI 140 >gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 224 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + K +++ A EF + + +V+D + + Sbjct: 2 RILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQS-FEYDLIVLDVMLPKLNGI 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ G + V L + + + G AGA+ +++KPF+ L +R L + Sbjct: 61 NLCQRIRQ--AGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRR 118 >gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes] Length = 228 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETAL-EGEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|108758269|ref|YP_629388.1| sigma-54 dependent DNA-binding response regulator FrgC [Myxococcus xanthus DK 1622] gi|6578851|gb|AAF18103.1|AF204400_3 FrgC [Myxococcus xanthus] gi|108462149|gb|ABF87334.1| sigma-54 dependent DNA-binding response regulator FrgC [Myxococcus xanthus DK 1622] Length = 466 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLVD V KV L G A EA + + + +V D M G+ Sbjct: 8 TVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPV-DVVVSDVRMPGMDGL 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 DV V L + +AGA F+LKPF+RE + F +R+ + Sbjct: 67 QVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRKALLRAQ 126 Query: 123 SKDENQF 129 ++ Q Sbjct: 127 GEEARQQ 133 >gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8] gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8] Length = 225 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + F V E E + +++D + + Sbjct: 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP-FDVVILDIMLPVHDGW 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + V L D E + G GA+ +L KPF+ L +R L + + Sbjct: 63 EILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 Query: 123 SKDENQF 129 + Sbjct: 123 ESKSTKL 129 >gi|53713422|ref|YP_099414.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60681669|ref|YP_211813.1| putative two component system histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|253565409|ref|ZP_04842864.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265763688|ref|ZP_06092256.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|52216287|dbj|BAD48880.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60493103|emb|CAH07884.1| putative two component system histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|251945688|gb|EES86095.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263256296|gb|EEZ27642.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301163212|emb|CBW22762.1| putative two component system histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 375 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + L + F + A++ +A + +KE P+ +++D M + F Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFNIVTASNGNQALDQVKKEN-PDLILLDVMMPDMSGF 69 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ P + + +L ++ G + G N F+ KPFN+E L + + Sbjct: 70 EVSQKLKADPEAAHIPIIFLTALNSTADIVKGFQVGGNDFISKPFNKEELIIRVSHQISL 129 Query: 121 QKSKD 125 +K Sbjct: 130 VAAKR 134 >gi|332706441|ref|ZP_08426502.1| histidine kinase [Lyngbya majuscula 3L] gi|332354325|gb|EGJ33804.1| histidine kinase [Lyngbya majuscula 3L] Length = 357 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 3/128 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +S+L+VD V L G+ + A+ EA EK + P+ +++D M Sbjct: 5 NSILVVDDEPCGFDVIEALLFKEGYNLSYASCGQEALNGLEK-IQPDVILLDVMMPELDG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E ++ P + + + E + AGA+ FL KP + LR +R + + Sbjct: 64 IEVCHRIKSHPKWHHIPIIIVTALNSKEDLARCLDAGADDFLGKPVSGIELRSRVRSMLR 123 Query: 120 MQKSKDEN 127 ++K DE Sbjct: 124 IKKQHDEL 131 >gi|319955728|ref|YP_004166995.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319424388|gb|ADV51497.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 237 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + F V A + E E +K+ + ++D M Sbjct: 6 KKILLVEDDPNFGIVLKDYLSMNDFDVVLAKNGMEGFEKFKKDNY-DICILDVMMPYKDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +V + +L + E ++ G +AGA+ +L KPF+ E L ++ + Q + Sbjct: 65 FTLAKEIREKNENVPIVFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLMKLKAILQRK 124 Query: 122 KS 123 S Sbjct: 125 AS 126 >gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] Length = 231 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + + VF+ + EA E +K + + ++D + V Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-VLDLAILDIMLPDVSGL 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + L + I G GA+ ++ KPF L ++ + Sbjct: 63 TICQKIRDKYNY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|220904043|ref|YP_002479355.1| Fis family two component sigma-54 specific transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868342|gb|ACL48677.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 453 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD R++ R L ++G+ + EA C +E + +++D M G+ Sbjct: 8 KLLVVDDDRNHREMLRALLEEWGYAPVTVDNGEEAVALC-QESPFDLILMDVRMGGMSGI 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A + V + D + +AGA +L KP + L+ A+ Sbjct: 67 EATRAIKGYNPAIPVLIMTAYSDVANAVEALKAGAYDYLTKPLAFDALKLALERALDHAS 126 Query: 123 SKDENQFL 130 +DE + L Sbjct: 127 LRDEVRAL 134 >gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes] Length = 228 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|167840679|ref|ZP_02467363.1| DNA-binding heavy metal response regulator [Burkholderia thailandensis MSMB43] Length = 230 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + GF+ + E + ++D + G Sbjct: 1 MK-VLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENY-DLAILDVMLPGCD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR++ V +L + + G G + +L KPF+ L +R L + Sbjct: 59 GWTV-VRELRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117 Query: 121 QKSKD 125 ++ D Sbjct: 118 GQATD 122 >gi|124008550|ref|ZP_01693242.1| transcriptional regulatory protein RprY [Microscilla marina ATCC 23134] gi|123985924|gb|EAY25781.1| transcriptional regulatory protein RprY [Microscilla marina ATCC 23134] Length = 230 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L V+ + V + + V + A E +++ + + D + + Sbjct: 1 MKAHILFVEDDASLALVTKDSLELRDYRVTHCANGQLALEQFQQDN-FDLCLFDVMLPQM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + L ++ + +L + E IAG + GA+ ++ KPF+ E + + + Sbjct: 60 DGFTLAEKVRTLNHEIPIIFLTAKAMQEDKIAGLKLGADDYITKPFSIEEVVLKIEVFLK 119 Query: 120 MQK 122 + Sbjct: 120 RSR 122 >gi|309389650|gb|ADO77530.1| response regulator receiver protein [Halanaerobium praevalens DSM 2228] Length = 231 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 6/135 (4%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R + G+ V A + + ++E +P +++D M G+ Sbjct: 1 MKNKVLIVDDEKNIRLTLKTALKKAGYQVETAVNGEDGLSILKEEEIP-VILLDMKMPGM 59 Query: 60 LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F+ + + V + E + + GA +L KPF E + + ++ Sbjct: 60 DGIQFLKEIAND--NFETKVIMITGYGSVETAVETLKLGAVDYLRKPFKPEEIIGIVEDV 117 Query: 118 PQMQKSKDENQFLDA 132 + K ++ + +++ Sbjct: 118 FERYKVENSGEEVES 132 >gi|212695249|ref|ZP_03303377.1| hypothetical protein BACDOR_04789 [Bacteroides dorei DSM 17855] gi|237725832|ref|ZP_04556313.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|212662159|gb|EEB22733.1| hypothetical protein BACDOR_04789 [Bacteroides dorei DSM 17855] gi|229435640|gb|EEO45717.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1343 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +LLLV+ + +R F V A + EA + + ++ D M Sbjct: 1077 MKGYTLLLVEDNESMRSFIFERLEVL-FTVETAVNGQEALDVLRSNH-IDLVISDIMMPV 1134 Query: 59 V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + E ++ + V +L + D E I G + GA +++ KPF+ L+ + Sbjct: 1135 MNGYELCKEIKGDIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKSQILS 1194 Query: 117 LPQMQKSKDE 126 L ++ + E Sbjct: 1195 LLSNRRKERE 1204 >gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] Length = 237 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G+ V A + +A E + V+D + V F Sbjct: 5 RILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADA-ARLILEQEFDLAVLDIMLPDVDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V L I G GA+ +++KPF L + + Sbjct: 64 -ELLRTIRTERTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRR 120 >gi|168180268|ref|ZP_02614932.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182668736|gb|EDT80714.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 230 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ + G VF+A +A ++ + +++D M + Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDAL-MLLEDHDIHLIIMDIMMPKMDGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A + ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|157144972|ref|YP_001452291.1| DNA-binding transcriptional regulator BaeR [Citrobacter koseri ATCC BAA-895] gi|157082177|gb|ABV11855.1| hypothetical protein CKO_00702 [Citrobacter koseri ATCC BAA-895] Length = 240 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ + + + ++ + P+ +++D + G Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLQYVHQTP-PDLILLDLMLPGTDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R++ +DV + + +++ + G GA+ ++ KP++ + ++ + + K Sbjct: 71 TLC-REIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 Query: 123 SKDENQFLDA 132 + E Q LDA Sbjct: 130 PQRELQQLDA 139 >gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R+ + F G+ + EAT+ + +E P+ +++D + G+ Sbjct: 1 MKQILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKA-REQTPDMVILDIILPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ + + L I G GA+ +++KPFN L + Sbjct: 60 GFNVCKTLRQ--EFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAIL 117 Query: 119 QM 120 + Sbjct: 118 KR 119 >gi|302343588|ref|YP_003808117.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640201|gb|ADK85523.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 483 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R+ R + G +V EA + E E + P+ +++D M + Sbjct: 8 RILVVDDEERIRQAVRRVLETMGMVVMEAANGREGLERI-ADYKPDLVLVDLMMPVMDGM 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + EK + + GA+ FL KPF + LR + + + Sbjct: 67 EMIGRARKSHASLAFVVITGYATLEKAVEAMKQGADDFLAKPFKPQELRLVIERVLKR 124 >gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L V+ ++R+ + GF+V A E + P+ ++D + G+ Sbjct: 4 THVLFVEDDDVIREATQLALERDGFVVTAAPDGLTGLERFRAD-RPDIALLDVMVPGLDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 63 VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|291448188|ref|ZP_06587578.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|291351135|gb|EFE78039.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] Length = 1819 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1699 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1758 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+MP + + L + GA+ ++ KP + + L M + Sbjct: 1759 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1816 >gi|237730663|ref|ZP_04561144.1| DNA-binding transcriptional activator KdpE [Citrobacter sp. 30_2] gi|226906202|gb|EEH92120.1| DNA-binding transcriptional activator KdpE [Citrobacter sp. 30_2] Length = 225 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEADGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + + V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 S Sbjct: 119 HAS 121 >gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 225 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + G+ V A E F + + +++D + + Sbjct: 2 RILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASY-DLIILDIMLPKIDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V L + E + G AGA+ +L+KPF+ + L +R L + Sbjct: 61 TLLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRR 118 >gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 232 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 6/135 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + V + G + A E K + +++D + G+ Sbjct: 1 MK-ILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHD-FDLIILDIMLSGMN 58 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ +V V L E +I G +GA+ +L+KPF L +R L Sbjct: 59 GIQVCREIRK--GNNNVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLV 116 Query: 119 QMQKSKDENQFLDAI 133 + K + +I Sbjct: 117 RRSKVVSSPRSTQSI 131 >gi|170720670|ref|YP_001748358.1| histidine kinase [Pseudomonas putida W619] gi|169758673|gb|ACA71989.1| histidine kinase [Pseudomonas putida W619] Length = 785 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G +V AT EA E E+E + +++D +M + + Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCVVQVATQGVEALERLEQED-FDLVLMDCNMPVMDGY 723 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +RQ ++ + L E+ AG N +L KPF RE L + Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALI 777 >gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2] gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2] Length = 230 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL++ H + ++ H GF V A E ++ + +++D + Sbjct: 1 MQHILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNY-DAILLDIMLPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F+ +R+ V V + + G GA+ ++ KPF+ L ++ Sbjct: 60 GMDFLKMIREQSK---VPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAI 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|303246261|ref|ZP_07332541.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492324|gb|EFL52196.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 396 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + + + V + +A E L+ + +++D M Sbjct: 7 RILVVDDEEYNLMMLNEILREE-YDVSISLGGLDALELLASSLVVDLILLDVMMPDLDGY 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ D V ++ E G R GA ++ KPF + +R ++ Sbjct: 66 EVCRRLKEDTRRGDTPVIFVTALSAGEDEERGLRLGAVDYITKPFKPSVVAARVRTHLRL 125 Query: 121 QKSKDENQFLDA 132 + + + + A Sbjct: 126 HRQQRVLEGMVA 137 >gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+V+ + G+ V E E + + +++D + G+ Sbjct: 2 RLLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMA-SEGVHDLVILDIMLPGMNGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R G D+ + L + G GA+ +L KPF+ L ++ L + Sbjct: 61 RVCAALRA--AGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|120403287|ref|YP_953116.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956105|gb|ABM13110.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 255 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + G+ + A EA + P+ LV+D + + Sbjct: 31 RVLLVDDERALTNLVKMALQYEGWEIDVAHDAAEAVDKYRANT-PDLLVLDIMLPDMDGL 89 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G +L + G AG + ++ KPF+ E L +R L + Sbjct: 90 GVLARLRESGAYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLLRR 147 >gi|126172995|ref|YP_001049144.1| two component transcriptional regulator [Shewanella baltica OS155] gi|153002077|ref|YP_001367758.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160876795|ref|YP_001556111.1| two component transcriptional regulator [Shewanella baltica OS195] gi|217974655|ref|YP_002359406.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304410608|ref|ZP_07392226.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307304701|ref|ZP_07584451.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125996200|gb|ABN60275.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151366695|gb|ABS09695.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160862317|gb|ABX50851.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217499790|gb|ACK47983.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304351092|gb|EFM15492.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306912103|gb|EFN42527.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315268997|gb|ADT95850.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 234 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + + D G+ V A+ A E E +P+ +++D + Sbjct: 5 KHILVVEDDISLAEWISDYLLDHGYEVTVASQGDFALEMI-AEEIPDLVLLDVMLPVKNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + R G + ++ V+ I G GA+ +L KP + L ++ L + Sbjct: 64 FDVCKEARAFYAG---PILFMTACVEDGDEIRGLDVGADDYLTKPIRPQVLLARIKALLR 120 Query: 120 MQKSKDENQFL 130 +++ Q L Sbjct: 121 RVGDEEQKQQL 131 >gi|209883336|ref|YP_002287193.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha carboxidovorans OM5] gi|209871532|gb|ACI91328.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha carboxidovorans OM5] Length = 231 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +RK+ R G+ + EA + EA E P+ +++D + + Sbjct: 7 KILVVDDEPPIRKLLRVGLTAEGYAMVEAVNGEEA-AALITEEKPDLILLDLGLPDISGH 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R ++ + L D ++ GA+ +L KPF L +R K Sbjct: 66 DLLERWRAELVELPIVVLSSRTDETGIVKALELGADDYLTKPFGMRELAARIRVAL-RHK 124 Query: 123 SKDENQF 129 + + + Sbjct: 125 LQQQGER 131 >gi|37527064|ref|NP_930408.1| two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786497|emb|CAE15553.1| Two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 225 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + + + GF V A+ A + + E L++D S+ + Sbjct: 2 RLLLVEDHPELLHWLQKALSSSGFAVDVASDGIVADQLLQTENY-ALLILDVSLPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR G ++ V L + D + + G +GA+ +L KPF+ + L +R L + Sbjct: 61 SLLVRLRKRGQNLPVLLLTAKTDVSERVKGLNSGADDYLTKPFDLQELEARIRALLRR 118 >gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + G+ V A S +A + ++ P+ +V+D M + Sbjct: 19 RVLVVDDEQMLTDLLSMALRMEGWDVRTAGSGFDALQAA-RDFAPDAMVLDIMMPDLDGM 77 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G DV V +L + +AG AG + ++ KPF+ E + +R L + Sbjct: 78 AVLQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRR 135 >gi|323138821|ref|ZP_08073885.1| response regulator receiver modulated diguanylate cyclase [Methylocystis sp. ATCC 49242] gi|322395969|gb|EFX98506.1| response regulator receiver modulated diguanylate cyclase [Methylocystis sp. ATCC 49242] Length = 457 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD K+ + F V AT+ EA E C ++ + +++D M G+ F Sbjct: 4 RVLIVDDLLPNIKLLEARLSAEYFDVVTATNGPEALELC-RDGRCDIVLLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V + + G GA+ FL KP + L +R L ++ Sbjct: 63 EVCTRLKADAATMHLPVVMVTALDQPADRVRGLECGADDFLTKPVDELALIARVRSLTRL 122 Query: 121 QKSKDENQ 128 + DE + Sbjct: 123 KIMLDELR 130 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61 +LLV+ D V EA + +V ++ + L Sbjct: 157 RILLVEDRAGSSDRIVAALRDL-HDVEIEPHPQEALFRAAENGYELVIVSLNLTDFDALR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R + + + L D +++ G G N ++++P +R L +R + + Sbjct: 216 LCSQLRSLERTRSIPILLLADLEDRPRILRGLDLGVNDYIVRPIDRNELVARVRTQLRRK 275 Query: 122 KSKDENQ 128 + D + Sbjct: 276 RYADSLR 282 >gi|291516107|emb|CBK65317.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 1357 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM--EGVL 60 ++++VD + + + V S +A + P+ +V D M + Sbjct: 1104 TVMVVDDDSNILDFLVKVL-GNDYFVISTDSGSQALNLL-RNNDPDLVVSDIMMADIDGI 1161 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ + + V L I G GA++++ KPF+ + L+ + L + Sbjct: 1162 ELCRRIKNDISTSHIPVILLTARTGISSKIEGFECGADAYIEKPFSPDQLKAQIFSLLR- 1220 Query: 121 QKSKDENQFLDA 132 ++DE + A Sbjct: 1221 --TRDEIRRFYA 1230 >gi|288957299|ref|YP_003447640.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288909607|dbj|BAI71096.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 237 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L VD +R++ G+ V A AR+ + E + + +V D + Sbjct: 3 ILAVDDDEPIRELLASYLAGEGYRVTTAPDTASARQALDGEPV-DLVVCDLRLPDGDGL- 60 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VRQ+ + + V L + I G GA+ +L KPFN L ++ + + Sbjct: 61 GLVRQIRTESQIPVIILSSKDQDVDRIVGLELGADDYLTKPFNPRELLARIKAVLRR 117 >gi|315502510|ref|YP_004081397.1| response regulator receiver sensor signal transduction histidine kinase [Micromonospora sp. L5] gi|315409129|gb|ADU07246.1| response regulator receiver sensor signal transduction histidine kinase [Micromonospora sp. L5] Length = 1227 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L D + +R+ L + + V EA E + ++ D M Sbjct: 625 RILFADDNSDLREHVVRLLSPA-YEVVAVPDGVEALRLAV-ETPFDLVLTDVMMPRLDGF 682 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R P V + L + +AG GA+ +L KPF+ + L +R ++ Sbjct: 683 GLVAALRAEPATRHVPIVLLSARAGAAEEVAGLSTGADDYLTKPFSSQELVARVRANVEL 742 Query: 121 QKSKDE-NQFLDAI 133 + + + + L A+ Sbjct: 743 GQLRGQIIRRLRAL 756 >gi|270296880|ref|ZP_06203079.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479144|ref|ZP_07938284.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|270272867|gb|EFA18730.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904716|gb|EFV26530.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 239 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 1/116 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + F++ A E +L P+ LV D M + F Sbjct: 5 TVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRKFF-DLRPDVLVADVMMPRMDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 R V +L ++ G GAN +L KPF + L ++ L Sbjct: 64 EMVRRIRQTDKQTPVLFLTARSTINDVVEGFELGANDYLKKPFGMQELIIRIKALV 119 >gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ R F V S + +E N +++D + + Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDY-NLIILDIMLPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D+ + + + + I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116 Query: 119 QMQK 122 + Sbjct: 117 ARYE 120 >gi|254413082|ref|ZP_05026854.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180246|gb|EDX75238.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 435 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + ++ +G+ V + A K + P+ +++D M + Sbjct: 13 ILIVDDTADSLRLLEAALTRYGYEVRSTVNGSMAL-MAAKAVAPDLILLDIKMPDMNGYD 71 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ P+ D+ + ++ + + G ++ KPF E + + ++ Sbjct: 72 VCSALKASPVTRDIPIIFISALDEVFDKVKAFALGGADYITKPFQFEEVLARVDHQLTIR 131 Query: 122 KSKDENQF 129 + + Sbjct: 132 QLTQGLEQ 139 >gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440] gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440] Length = 229 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + GF+ A +E P+ +++D + G+ Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAF-RENRPDIVLLDLMLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + + V + L + D ++ G +GA+ +++KPF + L MR + Sbjct: 60 SGIDVA-RSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|88860455|ref|ZP_01135093.1| putative response regulator [Pseudoalteromonas tunicata D2] gi|88817653|gb|EAR27470.1| putative response regulator [Pseudoalteromonas tunicata D2] Length = 551 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD + R + + G+ V + A + + P+ +++D M Sbjct: 2 RILVVDDQQLNRTLLTFMLKAEGYEVESVENGQLALDIIP-DYQPDIILLDVLMPVLNGY 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++M + + ++ D + G + FL KPF++ L ++ + Sbjct: 61 EVAPKIKEMSQDVYLPIIFITALDDQNSLQRCLEVGGDDFLSKPFDKVILSAKIKAHSRT 120 Query: 121 QKSKD----ENQFLD 131 ++ +NQ L+ Sbjct: 121 RELSKKAYQQNQLLE 135 >gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus ATCC 53653] gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + GF V A A + E P+ LV+D + G Sbjct: 20 RRILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEA-WQPDLLVLDVMLPGFDG 78 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE V+ V V L D M+ G GA+ ++ KPF+ + + L + Sbjct: 79 LEVCRRVQAR---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLR 135 Query: 120 MQKSKD 125 + Sbjct: 136 RVERAA 141 >gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 628 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ + + + V + E+ + + +++D + + Sbjct: 2 RILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSY-DLVLLDIELPLLDGI 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L + + + G AGA+ +++KP + L +R L + Sbjct: 61 SLCHQLRSH--NFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRR 118 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +++VD + + L +G + + E P+ LV+D M Sbjct: 496 TRVMIVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSH-PDLLVLDIEMPHLNG 554 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +E VR P + V ++ + D + +AGA+ +L KPF L + + Sbjct: 555 IELCQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLK 614 Query: 120 MQKSKD 125 ++ Sbjct: 615 RTQNLA 620 Score = 41.3 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 8/72 (11%) Query: 70 PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK----- 124 + + D K + R G ++FL KP E +R++ + + Sbjct: 440 QQNPPIPTVVFTTQGDISKRVEVVRLGGSAFLEKPVTIERAIAVIRDVFRQHYAINTRVM 499 Query: 125 ---DENQFLDAI 133 D+ Q L AI Sbjct: 500 IVDDDPQMLAAI 511 >gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R + + G+ VF+A+ EA E E+E + N +V+D M + Sbjct: 3 NNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEV-NLMVLDIMMPDMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + L +V+ I G GA+ ++ KPFN L +R L + Sbjct: 62 LEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRR 119 >gi|119492324|ref|ZP_01623671.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119453209|gb|EAW34376.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 233 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + + + V A A E C + P+ +V+D ++ F Sbjct: 5 KILVVDDDPAIRNLIARYLSQQDYEVESAKDGETALE-CFDQFSPDLVVLDVNLPDTTGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 I ++M T VF+ L I G GA+ ++ KPF L +R + + Q+ Sbjct: 64 ILC-QEMQSRTSVFILLLTSLTGEADKIKGFDKGADDYITKPFGLAELGARVRAILKRQR 122 Query: 123 SKDENQ 128 S +++ Sbjct: 123 SVADSE 128 >gi|18309439|ref|NP_561373.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144115|dbj|BAB80163.1| two-component response regulator [Clostridium perfringens str. 13] Length = 234 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G+ VF+ ++ E E EKE + + V+D M + Sbjct: 5 NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEV-HLAVVDIMMPKMDGA 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D + L + + I G GA+ ++ KPFN L + + Sbjct: 64 TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120 >gi|291441377|ref|ZP_06580767.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291344272|gb|EFE71228.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 1334 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + GF V A + + + +++D M + Sbjct: 1214 RTILVVDDDARNLFALSGILELHGFRVLHAENGRKGIDQLVNNPDVALVLMDVMMPELDG 1273 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R MP ++ + + + +GA+ ++ KP + + L +R Sbjct: 1274 YAATAEIRSMPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1332 Score = 34.0 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 7/61 (11%) Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA---G-ANSFLLKPFNRETLRFAMREL 117 F+ +R V V + RA G A FL + + LR + Sbjct: 1124 FLEALRGDSALASVPVLVHSGHRADAAVEEALRARTEGTALEFLS---SLDELRERIALH 1180 Query: 118 P 118 Sbjct: 1181 L 1181 >gi|258620439|ref|ZP_05715477.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573] gi|258587318|gb|EEW12029.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573] Length = 228 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + + GF + EA + +++D M + Sbjct: 1 MAHILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAV--TDQIDLILLDVMMPKLN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L KPF+ L +R + + Sbjct: 59 GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 Query: 121 QKS 123 ++ Sbjct: 118 TQN 120 >gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] Length = 224 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + G++V + E + + +++D + G Sbjct: 1 MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSY-DLILLDLMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + L + G +GA+ +L KPF E L MR + Sbjct: 60 GLEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116 Query: 119 QMQKSKDE 126 + +++ ++ Sbjct: 117 RREENTEQ 124 >gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] Length = 230 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L++D + + + + + + +++ +V+D M G+ Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEY-QLVVLDVMMPGMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + + + D + G RAGA+ +L KPF+ + L + L + Sbjct: 60 GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118 >gi|78065828|ref|YP_368597.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77966573|gb|ABB07953.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 252 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R + DFG +A + E E + +V+D + Sbjct: 22 RILVVDDDSQIRSLLCDCLADFGMTTAQAGTGAE-MHLALGEGGFDLVVLDLMLPDDDGL 80 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +++ + L + I G GA+ +++KPF L ++ + + Sbjct: 81 NLCREIRA---TSEIPLIILTARGEMTDRIVGLELGADDYIVKPFEPRELVARIQTILRR 137 Query: 121 QKSKDENQ 128 +++ + + Sbjct: 138 VRAQTQGR 145 >gi|54302690|ref|YP_132683.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9] gi|46916114|emb|CAG22883.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9] Length = 617 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ S + + + + GF V A + EA E + +++D M + F Sbjct: 490 TILLVEDSPSNQMIAKAILAKNGFNVVTANNGKEAVAALENTNY-DLILMDLQMPEMNGF 548 Query: 63 --IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + D+ + + V + + G + FL KP N+ + + Sbjct: 549 EACTCIRNLHNNKSDIPIIAMTANVSQQDQVQCFSVGMDDFLTKPINKIKMLEVLHHWLG 608 Query: 120 MQKSKD 125 S Sbjct: 609 RSHSHK 614 >gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 225 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + D ++V A +E E + +++D + + Sbjct: 2 RILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVES-FSYDLILLDVMLPKMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + L I G AGA+ +L+KPF+ L +R L + Sbjct: 61 TLCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRR 118 >gi|298481877|ref|ZP_07000067.1| DNA-binding response regulator [Bacteroides sp. D22] gi|298272099|gb|EFI13670.1| DNA-binding response regulator [Bacteroides sp. D22] Length = 229 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + +++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAMKMDISSY--HLILLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|298241030|ref|ZP_06964837.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554084|gb|EFH87948.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 6/117 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+++ +R+ D G+ EA A E E P+ +ID ++ + Sbjct: 3 VLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFV-EHKPDLAIIDINLPKMSGLN 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + + + E + G GA+ ++ KPFN L ++ L Sbjct: 62 VCKAIR---TTSTMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL 115 >gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + + + F ++ AT +A + L++D + + F Sbjct: 2 RILVAEDHPSLGPDIQRGLERFHYVTDLATDGEDALASALATPY-DLLILDVMLPSLDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + +L + + + G G + +L+KPF L +R L + +K Sbjct: 61 EVCRRLRSAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLRREK 120 Query: 123 S 123 S Sbjct: 121 S 121 >gi|297621789|ref|YP_003709926.1| sigma-54 dependent response regulator atoC [Waddlia chondrophila WSU 86-1044] gi|297377090|gb|ADI38920.1| sigma-54 dependent response regulator atoC [Waddlia chondrophila WSU 86-1044] Length = 461 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D I+R + GF V A + + K+ + + D M + Sbjct: 5 KILVIDDEEIIRTFIAETLSREGFEVSTAENGKKGIGQF-KDCSYDLVFTDMKMPDLTGI 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V + E + R GA ++L+KPF+ +T+ + + + Q Sbjct: 64 EVLTKIKEVSPQTPVVVITAYGSIENAVEAMRYGAFNYLIKPFSPDTIEAVVEKAKEHQS 123 Query: 123 SKDENQFLDA 132 ENQ+L Sbjct: 124 LITENQYLRE 133 >gi|295134954|ref|YP_003585630.1| response regulatory protein, sigma 54 related protein [Zunongwangia profunda SM-A87] gi|294982969|gb|ADF53434.1| response regulatory protein, sigma 54 related protein [Zunongwangia profunda SM-A87] Length = 388 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDF--GFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +LL++ +R+V + N+ + V EA E +KE + ++ D M Sbjct: 1 MSKILLIEDEAAIRRVLVKILNEENKDYNVTEAEDGLAGMELIKKEDY-DLVLCDIKMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + ++ + D + + R GA ++ KP + L A+R Sbjct: 60 MDGVEVLEATSKIKPEIPFVMISGHGDLDTAVQTMRMGAFDYISKPPDLNRLLNAVRNAL 119 Query: 119 QMQKSKDENQFLD 131 ++ EN L Sbjct: 120 DRKQLVQENARLK 132 >gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus Tu4000] gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus Tu4000] Length = 231 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 SLLL++ +R G V A S + + +E P+ +V+D + G+ F Sbjct: 9 SLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGIDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L D ++ G +GA+ +++KP L +R + + Sbjct: 68 EVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124 Query: 121 QKSKDEN 127 + + + Sbjct: 125 GERESSD 131 >gi|239944730|ref|ZP_04696667.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 11379] Length = 1809 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1689 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1748 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+MP + + L + GA+ ++ KP + + L M + Sbjct: 1749 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1806 >gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] Length = 231 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + +++D M Sbjct: 4 RNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLH-QIDLMILDIMMPKRNG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 63 LEVCQQVREE---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RSSFQQ 125 >gi|256823584|ref|YP_003147547.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256797123|gb|ACV27779.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 227 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 4/124 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+LLV+ + G++V A K + L++D + G+ F Sbjct: 4 SILLVEDHKELAATTGEYLEACGYIVDYAMDGISGLNLA-KNNQYDALILDVMLPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +RQ +D+ + L + G AGA+ +L+KPF+ E L + + + Sbjct: 63 TICQRIRQ-EAQSDIPILMLTARDQLSDKLDGFDAGADDYLIKPFDFEELDARLNAIIRR 121 Query: 121 QKSK 124 K + Sbjct: 122 HKGE 125 >gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 219 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + R + V A E V+D + + Sbjct: 2 RILLVEDDAALGEGIRVALKPEAYTVDWVQDGASALHALTHED-FALAVLDLGLPRMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V V L IAG AGA+ +L+KPF+ + L+ +R L + Sbjct: 61 QVLQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRRSA 120 Query: 123 SKDE 126 ++ + Sbjct: 121 NRAQ 124 >gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] Length = 223 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++LL++ V R G+ V A + + E + + +++D + G Sbjct: 2 NILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNY-DVVLLDLMLPGIQGQ 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + L E+ + G + GA+ +L KPF+ + L + L + Sbjct: 61 GVCRKLRARK--SKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRR 118 >gi|146342861|ref|YP_001207909.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195667|emb|CAL79694.1| putative Two-component transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 243 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 2/130 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LLLVD +R + G+ V A S +AR L + L++D M G F Sbjct: 23 LLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKL-TGLHFDLLILDVMMPGESGFD 81 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R + + V + L + E I G + GA+ ++ KPF L + + + Sbjct: 82 LA-RSIRTQSSVPIVMLTARSEPESRIEGLQLGADDYVAKPFEPRELALRIGNILKRAAP 140 Query: 124 KDENQFLDAI 133 + ++ I Sbjct: 141 PPAEEVVEQI 150 >gi|86606312|ref|YP_475075.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86554854|gb|ABC99812.1| sensor histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 409 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 5/133 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+ D R + R+ G+ + EA S E + P+ +++D M + F Sbjct: 29 LLIADDDPSQRLLTRYALEREGYQLVEADSGLACLEAASR-YQPDMVLLDAVMPDLDGFE 87 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ---- 119 R D+ + + D + AGA+ ++ KP + L+ +R L Q Sbjct: 88 CCRRLHAQNPDLPILIVTALEDETFVNEAFAAGASDYIPKPIHWSVLKRRLRHLLQANQA 147 Query: 120 MQKSKDENQFLDA 132 ++ + NQ L+A Sbjct: 148 QRRLQQLNQELEA 160 >gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 248 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + R + G++V A + +E + +++D + G+ Sbjct: 23 MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R + L E + G AGAN +L+KPF+ L +R + Sbjct: 81 GW-QVLRALRTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 Query: 121 Q 121 Sbjct: 140 H 140 >gi|330812291|ref|YP_004356753.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380399|gb|AEA71749.1| putative response regulator, PleD/VieA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 707 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD R L + V A+S EA E + +++D M + F Sbjct: 15 LLIVDDYPENLLSMRALLQRQDWQVMTASSGVEALNLLL-EHDIDLVLLDVQMPDMDGFE 73 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +L + + G +GA +L KPF+ + L+ ++ L + Sbjct: 74 VARLMRGSQRTRLTPIIFLTANEQSQDAVIKGYASGAVDYLFKPFDPQILKPKVQALLEH 133 Query: 121 QKSKDENQFLD 131 Q+++ Q L Sbjct: 134 QRNRRALQRLS 144 >gi|325298928|ref|YP_004258845.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324318481|gb|ADY36372.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1469 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 LLV+ + +R R +F F + EA++ E + +K +P+ ++ D M G Sbjct: 1209 LLVEDNLELRAFLRSIFKAQ-FQIIEASNGTEGIDKAKKH-IPDIIISDIMMPGQDGIAL 1266 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + + L + D + + G G +S++ KPF+ L+ + L ++ Sbjct: 1267 TKELRHDVATSHIPIVLLTAKTDMDSKLQGMELGIDSYITKPFSAIYLKARVDNLLARRQ 1326 Query: 123 SKDE 126 + Sbjct: 1327 RLRQ 1330 >gi|288940945|ref|YP_003443185.1| response regulator receiver modulated metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] gi|288896317|gb|ADC62153.1| response regulator receiver modulated metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] Length = 372 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD S V L + V ATS +A + P+ +++D M + + Sbjct: 7 TILIVDDSPENLAVLSELLQT-DYRVRAATSGDKALRVVKTAPKPDLILLDVMMPEMDGY 65 Query: 63 IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R D+ V ++ E I G GA ++ KP LR + ++ Sbjct: 66 EVFSRLRADSETRDIPVIFVTAMDSTEAEIRGLDVGAVDYIAKPIVPPILRARVHTQLEL 125 Query: 121 QKSKD 125 ++++D Sbjct: 126 KQARD 130 >gi|260223381|emb|CBA33890.1| hypothetical protein Csp_B21300 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 403 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 9/139 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD S VR++ + GF+V EA E + +E P+ ++ D M + Sbjct: 21 TILVVDDSVSVRQLTASVLRREGFVVLEAGDGREGLDTALRE-QPDVILCDIHMPVLDGW 79 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R V L + D + AGA+ +L KP+ + L A+ L + Sbjct: 80 DLVREARSSESLGTTPVLMLTSDNDRVSVRRAMAAGADDYLTKPWTQAELLSAVTSLLEK 139 Query: 121 QKS------KDENQFLDAI 133 + + Q A+ Sbjct: 140 ANRYKADADRAQEQLRSAV 158 >gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 233 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + ++ + V A + +++D + G+ Sbjct: 4 NILVIEDQEEINELIALNLETLNYTVTRALDGDIGLN-LSLNTRFDLIILDVMLPGIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + L + + G GA+ +L KPF+ L+ +R L + Sbjct: 63 QICQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRR 120 >gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1] gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1] Length = 222 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + + +V ++ G+ V A +E P+ +++D + Sbjct: 3 QRILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSA-RENTPDLVILDLGLPDFDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ + V + L ++ + AGA+ ++ KPF+ E L ++ + Q Sbjct: 62 AEVA-RRLRKTSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQ 120 Query: 122 K 122 + Sbjct: 121 Q 121 >gi|298208224|ref|YP_003716403.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Croceibacter atlanticus HTCC2559] gi|83848145|gb|EAP86015.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Croceibacter atlanticus HTCC2559] Length = 388 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M +L+++ +R+V + ++ + V EA E K+ + ++ D M Sbjct: 1 MPKILIIEDEAAIRRVLTKILSEENDTYEVQEAEDGLSGIELI-KDNDFDLVLCDIKMPK 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + + + + D + + R GA ++ KP + L +R Sbjct: 60 MDGVEVLEAAKKIKPETPIVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRIAL 119 Query: 119 QMQKSKDENQFLD 131 ++ EN+ L Sbjct: 120 DRKELVVENKRLK 132 >gi|313204235|ref|YP_004042892.1| two component transcriptional regulator, winged helix family [Paludibacter propionicigenes WB4] gi|312443551|gb|ADQ79907.1| two component transcriptional regulator, winged helix family [Paludibacter propionicigenes WB4] Length = 229 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G++V A S EA + + N L++D M V F Sbjct: 5 RILVVDDEEDLCEILQFNLETEGYLVDVAYSAEEALKK--DISIYNLLLLDVMMGEVSGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ P ++ + +L + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMARILRENPKMANIPIIFLTAKDSETDRLTGFNIGADDYISKPFSIREVLARVKAVIRR 122 >gi|301064766|ref|ZP_07205146.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] gi|300441141|gb|EFK05526.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] Length = 453 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ R++ R D G+ V A +A +E + ++ D M G+ Sbjct: 5 NILVVEDGKSQREMLRDFLKDEGYPVTAAEDGKDALSRL-QEDCFDLVLTDYKMPGMDGM 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 L +V V + E + +AGA ++ KP + + L+ + + + Sbjct: 64 ALLKAGKELNPEVDVVVMTAFGTVETAVNAMKAGAADYISKPIDLDELQLIIERIAGRRT 123 Query: 123 SKDENQFLD 131 EN+ L Sbjct: 124 IVRENRLLK 132 >gi|298241004|ref|ZP_06964811.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554058|gb|EFH87922.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+++ +R+ D G+ EA A E E E P+ +ID ++ + Sbjct: 3 VLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFE-EHKPDLAIIDLNLPKMSGLD 61 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + + + E + G GA+ ++ KPFN L ++ L Sbjct: 62 VCKAIR---TTSTMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL 115 >gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] Length = 1778 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1658 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDGY 1717 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 1718 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIGSGASDYVTKPVDPDHLLSVMEQWMR 1776 >gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 227 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + ++ + GF A + + P+ +++D + G Sbjct: 4 RVLVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTF-HDTQPDLVLLDLMLPGKDGT 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V + L + D ++AG AGA+ ++ KPF + L +R + Sbjct: 63 VVCREIRRESG---VPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRR 119 Query: 121 QK 122 + Sbjct: 120 VE 121 >gi|291326456|ref|ZP_06124598.2| KDP operon transcriptional regulatory protein KdpE [Providencia rettgeri DSM 1131] gi|291314289|gb|EFE54742.1| KDP operon transcriptional regulatory protein KdpE [Providencia rettgeri DSM 1131] Length = 239 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ +R+ R G+ VFEA + P+ L++D + Sbjct: 18 ILVIEDEKEIRRFVRLALEGEGWKVFEAENYHRGL-IESGTRQPDLLILDLGLPDGDGL- 75 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + + L + + +A AGA+ +L KPF L +R + Sbjct: 76 DLIRDLRQWSSIPIIVLSAREEESQKVAALDAGADDYLTKPFGISELLARVRVALRR 132 >gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY] gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY] Length = 1137 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-----ELLPNYLVIDESM 56 ++L+V+ + G V A + EA E E+ E + +++D M Sbjct: 1012 RTILVVEDDVRNVFALSSVLEPTGARVEIARNGREALEALERSNAAGESAVDLVLMDIMM 1071 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + F +A +R+ P + + L + + AGAN ++ KP + E L + Sbjct: 1072 PEMDGFAAMAEIRRRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1131 Query: 115 R 115 R Sbjct: 1132 R 1132 Score = 91.4 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ ++ L ++ GF A++ + E P+ +V+D ++ L Sbjct: 745 TILVIEDDPRFARILCDLAHEMGFQCVIASTGSDGLAAAL-EYGPSAVVLDMNLPDFSGL 803 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +++ P + V+ + + + M GA + LKP RE L A+ Sbjct: 804 GVLDQLKRNPATRHIPVHVVSV---ADYMQEAMERGAIGYALKPVKREELEQAL 854 Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 3/96 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ R+ HL G + A + +A + K + +V+D + Sbjct: 865 MRRVLVVEDDARQRESVHHLLATDGVEIVGAATARQALDLL-KGSTFDCVVMDLHLPDLN 923 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94 E + + + + V R Sbjct: 924 GYELLQQMAEQEEVSFPPVIVYTGRNLSRDEEQQLR 959 >gi|78779101|ref|YP_397213.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712600|gb|ABB49777.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 242 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEG-- 58 +LLV+ +R GF V A +F + + +++D + G Sbjct: 13 RILLVEDDKSIRLTVSETLISEGFKVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + L + + + G GA+ +L KPF L R L Sbjct: 73 GLELCRKIRNDEDY--TPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALI 130 Query: 119 QMQKSKDE 126 + K + Sbjct: 131 RRSKRNKK 138 >gi|116750232|ref|YP_846919.1| two component sigma54 specific Fis family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699296|gb|ABK18484.1| two component, sigma54 specific, transcriptional regulator, Fis family [Syntrophobacter fumaroxidans MPOB] Length = 450 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD IVR+ F G+ A A E + + +D M V F Sbjct: 6 KVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMV-AGKDYDLVFLDIKMPDVSGF 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V + E + + GA+ +L+KPF+ + L + L Q +K Sbjct: 65 EVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERLLQQKK 124 Query: 123 SKDENQFLDA 132 DEN L Sbjct: 125 IVDENAMLRE 134 >gi|284048297|ref|YP_003398636.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283952518|gb|ADB47321.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 226 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 2/127 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G V A + + + + ++ D M Sbjct: 1 MK-VLLAEDEKAMSMALCAVLEHSGCQVDPVYDGQAAVDKARQNIY-DAMIFDIMMPVKD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A G V L + + + I G AGA+ +L KPF L +R L + Sbjct: 59 GITALTELRQEGDRTPVIMLTAKAEVDDRITGLDAGADDYLTKPFAMGELLARLRSLTRR 118 Query: 121 QKSKDEN 127 Q+ + N Sbjct: 119 QEDFNRN 125 >gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074] Length = 1798 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 2/116 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1676 QKVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1735 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 + +R+MP + + L + +GA+ ++ KP + + L M Sbjct: 1736 YATTSAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLAVME 1791 >gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 234 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + R + G++V A E + +V+D + + Sbjct: 2 RILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDY-DLIVLDVLLPELDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G V L + + G AGA+ +L+KPF+ L +R L + Sbjct: 61 SVLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRR 118 >gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19] gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19] Length = 226 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + + + +D G++V A EA F + +++D + + Sbjct: 2 RILLAEDDPDLSRQLKASLSDAGYVVDHAPDGEEA-HFLGDTEPYDCIILDLGLPKIDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G V L + ++G AGA+ +L KPF+ E L +R L + Sbjct: 61 SVLERWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120 Query: 123 SKDE 126 + Sbjct: 121 GHAQ 124 >gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 224 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + G+ V A + A E + E + ++ D M Sbjct: 1 MVKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYELLQSE-QFDLVLSDIMMPQVD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +F +R+ + + ++ D G +G + +++KP N L ++ L Sbjct: 60 GYQFAQELRRTD--PSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALL 117 Query: 119 QMQKSKDEN 127 + K +N Sbjct: 118 RRAKITADN 126 >gi|326776200|ref|ZP_08235465.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus XylebKG-1] gi|326656533|gb|EGE41379.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus XylebKG-1] Length = 1821 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1701 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1760 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+MP + + L + GA+ ++ KP + + L M + Sbjct: 1761 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1818 >gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ + + K+ + V A ++ + +++D M L Sbjct: 2 RILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYL-AGAEYDVVILDIMMPKKDGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ V V L + E + G AGAN +L+KPF E L +R L + Sbjct: 61 SVLREIRQ--KNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118 Query: 121 QKSKD 125 + + Sbjct: 119 PEKSE 123 >gi|312877360|ref|ZP_07737325.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795834|gb|EFR12198.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 234 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++ +VD + + G+ V + E K P+ +++D + Sbjct: 5 TVYVVDDEKDILDLVSEYLIQKGYAVKTFENGESFLEEFGKSE-PDIVILDIMLPDIDGY 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ +DV + L + + + G G++ ++ KPF+ L ++++ + Sbjct: 64 EICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120 >gi|221195593|ref|ZP_03568648.1| response regulator receiver protein [Atopobium rimae ATCC 49626] gi|221184780|gb|EEE17172.1| response regulator receiver protein [Atopobium rimae ATCC 49626] Length = 227 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL + + L + V A + + + ++D M + F Sbjct: 2 RILLAEDEKRMAAAIVALLKQEKYDVDHMADGVSAL-LALESNMYDIAILDVMMPKMNGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + + L + + + G GA+ +L KPF+ L +R L + Sbjct: 61 EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFHTAELLARLRALGRRSS 120 Query: 123 S 123 + Sbjct: 121 N 121 >gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] Length = 227 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + + G+ V +A + E + +V+D + + Sbjct: 3 RKILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHA-DLIVLDVMLPRLNG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R G +V + L ++G AGA+ ++ KPF E L +R + + Sbjct: 62 LEVLRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKRK 121 Query: 122 KSKDEN 127 + + Sbjct: 122 STDRQE 127 >gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16] gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 224 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + R + G+ V A +A E+E + +++D + + Sbjct: 2 RILLVEDEAALAAQVRASLAEAGYAVDVAADGLDACHLGEQEPY-DAVILDLGLPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V V L + + + G AGA+ +L KPF E L +R L + Sbjct: 61 SVLRRWRAAQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRR 118 >gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 232 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LL+++ + + + + F V A E + +ID + + Sbjct: 2 RLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDY-DLCLIDWMLPKLSGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ G+ V V +L + ++ G AGA+ ++ KPF E L +R + Sbjct: 61 EVCRQLRK--AGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQ 118 >gi|118579804|ref|YP_901054.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118502514|gb|ABK98996.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 454 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 1/133 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R + L G+ V A+S E + + +V D M GV Sbjct: 1 MRRILVVEDDRFFRDLFYDLLVGQGYDVDRASSGEEGLDRL-STYAFDLVVTDLVMPGVD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V + + E I + GA + +KP N + ++ + + Sbjct: 60 GMDILARARENDPSADVIMVTGNANLESAIFALKHGARDYFVKPINPDEFLHSVAQCLEQ 119 Query: 121 QKSKDENQFLDAI 133 ++ DEN+ L ++ Sbjct: 120 RRILDENEELKSM 132 >gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides DSM 266] Length = 222 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+++ + + + F V A + + +++D + G + Sbjct: 2 RILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMAILNEY-DLMIVDWMIPGISGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ G+ V + +L + E ++ G AGAN ++ KPF E L +R + Sbjct: 61 EVCRQVRK--AGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRR 118 >gi|323191046|gb|EFZ76311.1| KDP operon transcriptional regulatory protein kdpE [Escherichia coli RN587/1] Length = 225 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 238 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 +LL+D + K+ + GF +F+A + E + C+ E P+ +V+D M + Sbjct: 8 RKILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEK-PDIVVLDIMMPDMD 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + + + V V +L + D I GA+ ++ KPF+ + + F ++ + Sbjct: 67 GFEVC-KNIRNFSFVPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRR 125 >gi|284039451|ref|YP_003389381.1| histidine kinase [Spirosoma linguale DSM 74] gi|283818744|gb|ADB40582.1| histidine kinase [Spirosoma linguale DSM 74] Length = 663 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 4/124 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +++V+ + +R + + V A S + E LP+ ++ D M G+ Sbjct: 416 VVVVEDNDELRTFLAEELTNH-YRVLTAASGERGWTMIQTE-LPDVVISDVMMPGMDGYA 473 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P + V L + + +AG + GA+ +L KPF E L +R L Q Sbjct: 474 LTQLIKTTPATDHIAVILLTAKAASDSRLAGLQQGADDYLTKPFVIEELVLRLRNLLARQ 533 Query: 122 KSKD 125 + Sbjct: 534 QRLR 537 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 4/132 (3%) Query: 2 DSLLLVDSSHIV--RKVGRHLFN-DFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME 57 +L++D + + R G + A EA + E + L++D +M Sbjct: 3 TKILVIDDEPDIEPLLLQRFWLTIREGIYQFKFARGGYEAISLIKAEPDYDVLLVDINMR 62 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + L + + D + + GA F+ KP N + L + + Sbjct: 63 DMDGLTLLSYLPDLLPNGRAVMVSAYGDMDNIRTAMNRGAFDFVCKPINFKDLELTVEKT 122 Query: 118 PQMQKSKDENQF 129 + E+ Sbjct: 123 ARHVHQLRESAR 134 >gi|329962208|ref|ZP_08300214.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328530316|gb|EGF57193.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1352 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+VD + + + + F V A+ A + L+P+ +V D M + Sbjct: 1106 VLIVDDNEDFIAFMKDSLSLY-FSVQSASDGAAAWKMIP-GLMPDLVVSDLMMPEMDGNE 1163 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+ ++ L + E + G GA+ ++ KPFN E L MR+L + Sbjct: 1164 LCRLVKTDKCTRNIPFILLTAKQSVENKVEGLTIGADDYVTKPFNMEVLILRMRKLIDLS 1223 Query: 122 KSKDENQFLD 131 +D Sbjct: 1224 SRSKLRTRID 1233 >gi|329955010|ref|ZP_08295991.1| putative transcriptional regulatory protein RprY [Bacteroides clarus YIT 12056] gi|328526300|gb|EGF53315.1| putative transcriptional regulatory protein RprY [Bacteroides clarus YIT 12056] Length = 238 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + F + A E +L P+ LV D M + F Sbjct: 5 KVLLVEDEETLAMIIKDTLEGQNFTIHTAADGEEGLRRFF-DLRPDVLVADVMMPRMDGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V +L ++ G GAN +L KPF + L ++ L Sbjct: 64 EMVRRIRQTDKHTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALAGR 121 >gi|302392131|ref|YP_003827951.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] gi|302204208|gb|ADL12886.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] Length = 119 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +L+V+ + + V R + G+ V ++ +A E E P+ +++D + + Sbjct: 1 MNKILVVEDNKNIITVLRICLQNAGYEVKTVSNGVKAVETAF-EWKPDLILLDIKIPKMN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F ++ + + + L + + E + GA ++ KP + L + + Sbjct: 60 GFLVCETLKDEEVTANTPIIMLSAKAEEENIKKAYNLGAEGYITKPIEPKRLLAEIDKYL 119 >gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 954 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD + + +KV + G+ V A + EA + P + +D M + Sbjct: 815 QRLLVVDDNPVNQKVALKMLEKLGYRVDVAGNGMEALAAVCRHQYP-LVFMDCQMPELDG 873 Query: 62 F--IAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R GT + + + +AG + F+ KP + LR + Sbjct: 874 LETTRLIRSQEQAGTHLPIIAMTANAMAGDRENCLKAGMDDFISKPIVPDQLREILSRWL 933 Score = 90.6 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESME 57 + LVD + R + ++ + + A A + +ID M Sbjct: 666 RRVCLVDDNPTNRSLLQYHVSGWNMHHESAVDAPSALALLRQAAADGTPFDLAIIDIHMP 725 Query: 58 --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 G L+ +++ P + L IA AGA+++L KP L +R Sbjct: 726 DIGGLQLCRLIKEDPAIRATHLIVLTAFGQRGDSIAAKEAGASAYLPKPVRERQLADCIR 785 Query: 116 ELPQMQKSKD 125 + + S + Sbjct: 786 LILGRKDSDE 795 >gi|296125343|ref|YP_003632595.1| two component, sigma54 specific, transcriptional regulator, Fis family [Brachyspira murdochii DSM 12563] gi|296017159|gb|ADG70396.1| two component, sigma54 specific, transcriptional regulator, Fis family [Brachyspira murdochii DSM 12563] Length = 444 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L++D +R + G+ V A + + E K + ++ D M Sbjct: 1 MPKILVIDDEKNIRDGIKKSLEFEGYEVVTAENGEKGIETVYKGG-IDLVITDLKMPEKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 EF+ + + + V L + E + R GA F+ KPFN + + + Sbjct: 60 GEEFLKDI--LEFDKHIPVIVLTGHGNVETAVEMMRLGAYDFMTKPFNLDKMLLIIARAL 117 Query: 119 QMQKSKDENQFLD 131 + + K N+ L+ Sbjct: 118 ESKNIKKTNETLE 130 >gi|225386432|ref|ZP_03756196.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme DSM 15981] gi|225047463|gb|EEG57709.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme DSM 15981] Length = 121 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + ++ + EA + PN +++D + G+ Sbjct: 5 QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFP-DFKPNLVLLDLMLPGMDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + V + L + + + G GA+ +++KPF+ + L ++ + + Sbjct: 64 YQVCRELR---TSSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|198276323|ref|ZP_03208854.1| hypothetical protein BACPLE_02518 [Bacteroides plebeius DSM 17135] gi|198270765|gb|EDY95035.1| hypothetical protein BACPLE_02518 [Bacteroides plebeius DSM 17135] Length = 517 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 58/127 (45%), Gaps = 4/127 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + +R+ L + + V A + EA + + +P+ +V D M + Sbjct: 269 RVLIVDDNQDLREYLHQLLS-VRYQVSCAENGKEAWDSILQN-MPDLVVSDVMMPVMDGI 326 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++Q + + V L + E + G +GA+ +L KPF+ + + + + + Sbjct: 327 QLCRNIKQNLSTSHIPVILLTAKAASEDYVEGLESGADVYLEKPFSGDVINAQIASIFRN 386 Query: 121 QKSKDEN 127 ++ ++ Sbjct: 387 REGMKKD 393 >gi|169350089|ref|ZP_02867027.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552] gi|169293302|gb|EDS75435.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552] Length = 235 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R + G+ V+ AT+ E E K + ++D M + Sbjct: 4 TILIVEDEMGIRDTVSVFLKNQGYKVYTATNGQEGLEVVSKHE-IHLAIVDIMMPVMDGI 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ D + +L + + I G G + ++ KPF L + + + Sbjct: 63 TMTMKLRQKY-DFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFEPMELVARVNTNIRRYE 121 Query: 123 S 123 Sbjct: 122 Q 122 >gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides DSM 2048] gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BDRD-ST196] gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BDRD-ST196] gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides DSM 2048] Length = 224 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+++ + G++V + E E + +++D + G Sbjct: 1 MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAAL-EKNYDLILLDLMLPGLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R + L + G +GA+ +L KPF E L MR + Sbjct: 60 GLEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116 Query: 119 QMQKSKDE 126 + +++ ++ Sbjct: 117 RREENTEQ 124 >gi|110638364|ref|YP_678573.1| response regulatory protein, sigma 54 related [Cytophaga hutchinsonii ATCC 33406] gi|110281045|gb|ABG59231.1| response regulatory protein, sigma 54 related protein [Cytophaga hutchinsonii ATCC 33406] Length = 384 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 1/131 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D +R + + V EA E + + + ++ D M + Sbjct: 1 MPKILIIDDERSIRSTLTEILEYEKYTVEEAKDGEEGLKMILENDY-DVVLCDIKMPKMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G D+ + E I R GA F+ KP + L ++R Sbjct: 60 GMEVLEKVYTSGKDIPFIMISAHGSIETAIDATRKGAYDFITKPPDLNRLLVSVRNAMDR 119 Query: 121 QKSKDENQFLD 131 E + L Sbjct: 120 SNLVTETKTLK 130 >gi|329920981|ref|ZP_08277509.1| response regulator receiver domain protein [Lactobacillus iners SPIN 1401G] gi|328935257|gb|EGG31737.1| response regulator receiver domain protein [Lactobacillus iners SPIN 1401G] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + A EA + +++D M + Sbjct: 1 MVKVLVVDDDKEIVELLSIYLKNENYDPIVACDGREALTKFRMDPSITCIILDIMMPEMS 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ ++V + + I G GA+ ++ KPFN + +R L + Sbjct: 61 GL-DLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRR 119 Query: 121 QK 122 + Sbjct: 120 SE 121 >gi|330800409|ref|XP_003288229.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum] gi|325081737|gb|EGC35242.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum] Length = 1400 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L+V+ + + + L + + + V A E E K P+ +V D M + E Sbjct: 579 VLVVEDNPEMNRFIAELLSKY-YFVVTAFDGIEGIEK-TKAFTPDLIVTDCMMPKMSGDE 636 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R ++ + L + D + + G + ++ KPF+ E L + L M+ Sbjct: 637 MVEKLRSDEQYDNIPIILLTAKADENLRVRLLQNGVSDYVNKPFSSEELVARVVNLMTMK 696 Query: 122 KSKD--ENQFLDA 132 K+K + + A Sbjct: 697 KAKQFLQEELSSA 709 Score = 67.1 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 9/113 (7%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFC--EKELLPNYLVIDESME-- 57 S++LVD + + G + V +A +F + P+ ++ D +M Sbjct: 1227 SIMLVDDLEETNLLFSSMLYKLGARRIDTFQRVADAYQFLCDPNKPQPDIILSDLTMPFE 1286 Query: 58 GVLEFIAHVR----QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106 + +R P + + L V ++G + KP N Sbjct: 1287 DGYSMVRKLRDREKINPQNKVIPIIALTASVSSYDKEKVLKSGFDLHCPKPVN 1339 >gi|317495884|ref|ZP_07954247.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914061|gb|EFV35544.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL + + + + V + +A ++ + + ++D M + Sbjct: 2 RLLLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDY-DGAILDVMMPKMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + V L + + E + G +GA+ +L KPF + L +R + + Q Sbjct: 61 TVVKKLRENKKNTPVLLLTAKSEVEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQ 119 >gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 4/134 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ + +++ +R + + FG+ V +A E + P V D + G+ Sbjct: 1 MELIYVIEDDDNIRDLIKIALEGFGYEVSAFEMAEDALRHIESD-QPALAVFDLMLPGMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ D+ + L + +AG GA+ ++ KPF L +R L Sbjct: 60 GLTAIRRIRKNESLKDIPILILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLL 119 Query: 119 QMQ-KSKDENQFLD 131 + + + E+ L+ Sbjct: 120 RRSTRDQAESNELN 133 >gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 223 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ + + D + V + E E + + +++D + + Sbjct: 1 MKKILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTY-DLIILDIMLPKIS 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ + V + L D + I G A+ ++ KPF+ + L + + Sbjct: 60 GFAVCEMIRKE---SHVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 239 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + +VD +R + G+ + E + P+ V+D + G+ F Sbjct: 7 IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNP-PDMWVLDIMLPGMDGFE 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120 +R V + + + I G G++ +++KPF+ L ++ Sbjct: 66 LCRRIRAEAE---VPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRW 122 Query: 121 -QKSKDENQ-FLDA 132 + ++ EN L A Sbjct: 123 YKFNRAENVPRLAA 136 >gi|220925821|ref|YP_002501123.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950428|gb|ACL60820.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 234 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+V+ +R + + GF V A SV EA ++ +P +++D + Sbjct: 1 MTSVLVVEDDSDIRGMLARGLSAEGFSVNLAGSVDEALAAA-RDRVPEAVLLDIMLPDGS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G + +L + + + G GA+ +++KPF + L +R Sbjct: 60 GHDVCRSLR--EGGYPGAILFLSAKDEVSDRVDGLAVGADDYIVKPFAFDELLARLRTHL 117 Query: 119 QMQKSKDENQFL 130 Q +++ E + L Sbjct: 118 QRRRAAGEPRTL 129 >gi|153815040|ref|ZP_01967708.1| hypothetical protein RUMTOR_01257 [Ruminococcus torques ATCC 27756] gi|331088614|ref|ZP_08337525.1| hypothetical protein HMPREF1025_01108 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847608|gb|EDK24526.1| hypothetical protein RUMTOR_01257 [Ruminococcus torques ATCC 27756] gi|330407571|gb|EGG87071.1| hypothetical protein HMPREF1025_01108 [Lachnospiraceae bacterium 3_1_46FAA] Length = 235 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 45/117 (38%), Gaps = 2/117 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+++ ++ + + V A + + E + P+ +++D + + Sbjct: 5 SVLIIEDEKNIQTFMGKVLKRHDYQVLYADTGKQGLEMI-RSRCPDLILLDLGLPDMDG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R + + + + +A GA+ ++ KPF L +R + Sbjct: 63 CSIIRDVRTWASTPIIVISARTAEREKVAALDLGADDYITKPFGTSELLARIRASLR 119 >gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 4/130 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++LV+ + G+ V A EA E KE +++D + Sbjct: 1 MKKAVIMLVEDEESLASFLITELELEGYEVIWAKDGREALEIF-KEKDITLILLDWMLPI 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R++ ++V + + + G + ++ KPF E L +R + Sbjct: 60 YDGLTV-LRRIRQSSNVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVVL 118 Query: 119 QMQKSKDENQ 128 + K + Sbjct: 119 RRLGQKKAEK 128 >gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLL++ +R + G V A + + + +E P+ +V+D + G+ F Sbjct: 10 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLL-REQRPDLIVLDVMLPGIDGFE 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + L D ++ G +GA+ +++KP L +R + + Sbjct: 69 VCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRG 125 Query: 122 KSKDEN 127 + + + Sbjct: 126 EREATD 131 >gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + R ++ GF+V A + + L++D + + + Sbjct: 2 KILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDY-DLLILDVMLPRMDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G ++ V +L E + G GA+ +L+KPF L +R L + K Sbjct: 61 ALLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGK 120 Query: 123 SKDENQFLDA 132 SK+ A Sbjct: 121 SKEPETLKAA 130 >gi|203288189|ref|YP_002223204.1| response regulatory protein [Borrelia recurrentis A1] gi|201085409|gb|ACH94983.1| response regulatory protein [Borrelia recurrentis A1] Length = 451 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 5/133 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+ D +R+ + G+ VF A+ EA E + E + ++ D M + Sbjct: 1 MSKLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIQNEK-IDAIISDLRMPQIS 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + V+ ++ L + + R GA FL KP + E L ++ Sbjct: 60 GEELLKIVK--DRNLNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRAL 117 Query: 119 QMQKSKDENQFLD 131 + + K + L Sbjct: 118 KKRNDKTQQNVLQ 130 >gi|254424516|ref|ZP_05038234.1| Stage II sporulation protein E [Synechococcus sp. PCC 7335] gi|196192005|gb|EDX86969.1| Stage II sporulation protein E [Synechococcus sp. PCC 7335] Length = 422 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 8/135 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV---L 60 +LL+D + + + L G+ V A L P+ ++ D + G + Sbjct: 31 ILLIDDDPYILQGLQRLLQKHGYRVETANDADSGLHKAI-HLAPSVVICDLLLPGGSSGI 89 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119 + ++Q P + D + AGA+ L+KP + L + + Sbjct: 90 DICCQIKQDPQLATTAFLIMTSHSDLANRVEALEAGADDLLIKPIDTAELVARVNSGLRL 149 Query: 120 ---MQKSKDENQFLD 131 MQ + + + L+ Sbjct: 150 HKLMQALRAQTRRLE 164 >gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium abscessus ATCC 19977] gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium abscessus] Length = 227 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + G+ V + +A C +E P+ +V+D + G+ Sbjct: 5 RRILVVDDEPTICASISARLRAEGYAVDTEDNGLDAVRHC-RENPPDLMVLDVMLPGLDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 RQ+ + V L M+ G GA+ +L KPF+ L + L + Sbjct: 64 LEVC-RQVQAHAPIPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRR 121 >gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032] gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 51/129 (39%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V G+ V + + + E+E + +++D + + Sbjct: 5 KILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEES-FDLVLLDVMLPELSGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R T + + ++G GAN ++ KPF+ E L +R ++ Sbjct: 64 EVLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNI 123 Query: 123 SKDENQFLD 131 ++ + + + Sbjct: 124 NEQQEKETE 132 >gi|120404638|ref|YP_954467.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119957456|gb|ABM14461.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 246 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L+VD + +V F V A S +A +E+ P+ +++D ++ G+ Sbjct: 13 RALVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQA-REIDPDVVILDLALPGIDGV 71 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 RQ+ +D +V L I G GA+ ++ KPF+ L +R + + + Sbjct: 72 EVC-RQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPR 130 >gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LL++ + + ++ GF + + A E C +++ P+ +++D + Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELC-RQVRPDLILLDIMLPDSD 64 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ +R+ P + V +L I G GAN +++KPF L ++ Sbjct: 65 GLDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIK--L 122 Query: 119 QMQKSKDENQFLDA 132 Q + + L+A Sbjct: 123 QFRNQATPARLLEA 136 >gi|322385260|ref|ZP_08058906.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270683|gb|EFX53597.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 232 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A E + K+ + + ++ D M + Sbjct: 3 KTILLVDDEMDILDIQKRYLMQEGYHVLVARDGVEGLDLFRKKSV-DLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDFISEVQYIAPDQPFLFTTAKTSDQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 122 HRGGEIEQIE 131 >gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 1149 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD G +V + EA E E+ + +++D M + Sbjct: 1025 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1084 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ P + + + + + +AGAN +L KP + + L +R Sbjct: 1085 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1143 Score = 86.8 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+++ ++ L ++ G+ A E E + +P+ +++D + L Sbjct: 759 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELA-AQYIPDAILLDMRLPDHSGLT 817 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117 + +++ + V+ + E + GA + +KP +RE L+ L Sbjct: 818 VLQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 870 Score = 62.1 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 18/138 (13%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + R+ L D + +A + + + ++ID + +L Sbjct: 879 KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIY-DCMIIDLKLPDMLG 937 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARA----GANSFLLKPFNRETLR 111 + + + V + ++ +R+ GA + E L Sbjct: 938 NELLKRMTAEDIRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGAR-------SPERLL 990 Query: 112 FAMRELPQMQKSKDENQF 129 + +S+ N+ Sbjct: 991 DEVTLFLHKVESQLSNER 1008 >gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + K+ F + A S EA E E +++V+D M + Sbjct: 3 KTILVVDDDEEIVKLITKSLRYEQFAIISACSGKEALSALE-ENHIDFIVLDIVMPDMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +V + +L I G GA+ ++ KPF+ + L ++ + Sbjct: 62 LDVCRSIRNS---YNVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHFR 118 Query: 120 M 120 Sbjct: 119 K 119 >gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++++V+ + +V G+ T A E + P +++D + G+ Sbjct: 1 MRTIMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQL-TTVQPALILLDVMLPGLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R++ + V L + + + G +GA+ +++KPF + ++ + + Sbjct: 60 GW-EVLREVRNRSTCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILRR 118 >gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + GF+ A ++ P+ +++D + G+ Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAF-RDNRPDIVLLDLMLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + + V + L + D ++ G +GA+ +++KPF + L MR + Sbjct: 60 SGIDVA-RAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|209523595|ref|ZP_03272149.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496000|gb|EDZ96301.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 356 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD V L +D + + ++ A + L PN +++D M + Sbjct: 7 SILIVDDDPDNFDVIETLLSDQNYQLHYTSNGTRAIASLDI-LQPNLILLDVMMPDMDGQ 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + + + E + GA+ F+ KP NR L + + ++ Sbjct: 66 QVCRAIKDIRKWQTLPIIMVTALDSKEDLARCLETGADDFISKPINRVELVARVNSMLRI 125 Query: 121 QKSKDENQFLDAI 133 + D+ L+AI Sbjct: 126 KSQYDD---LEAI 135 >gi|254410317|ref|ZP_05024096.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182523|gb|EDX77508.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 331 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 10/138 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R V R G+ V E + FC E LP+ +++D M + F Sbjct: 13 ILIVDDEKTLRLVLRRAMEQEGYRVSEVGDGHQCLAFC-TEQLPDIILLDAMMPVMDGFT 71 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118 A +++ V + + E + AGA ++ KP + LR +R L Sbjct: 72 CCAQLQERFGQKCPPVLMITGLNNQESVDRAFEAGATDYITKPIHWAVLRQRVRRLLHTH 131 Query: 119 ----QMQKSKDENQFLDA 132 ++ + ++ + L A Sbjct: 132 WVMAELHRKIEQERVLKA 149 >gi|168204365|ref|ZP_02630370.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170664057|gb|EDT16740.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] Length = 234 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G+ VF+ ++ E E EKE + V+D M + Sbjct: 5 NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D + L + + I G GA+ ++ KPFN L + + Sbjct: 64 TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120 >gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ + +A + E EK + +++D + + Sbjct: 1 MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGE-IDLILLDIMLPEIN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ + L ++G AGA+ ++ KPF E L +R + Sbjct: 60 GL-EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + GF V A S +A E + ++D + + F Sbjct: 4 RILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADA-AKAILEQEFDLALLDVMLPDIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V L + I G GA+ +++KPF L + + Sbjct: 63 -ELLRTIRSSHTYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRR 119 >gi|88608688|ref|YP_506396.1| response regulator PleD [Neorickettsia sennetsu str. Miyayama] gi|88600857|gb|ABD46325.1| response regulator/GGDEF domain protein [Neorickettsia sennetsu str. Miyayama] Length = 456 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD K+ + V A+S A E K+ P+ +++D M + F Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELA-KQHQPDVILLDVMMPEMDGFE 63 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V + D E + G +GA+ FL+KP TL ++ L + + Sbjct: 64 TCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAKDFTLFIRIKSLLRFK 123 Query: 122 KSKDENQF 129 DE + Sbjct: 124 TVLDEVRL 131 Score = 46.0 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 6/83 (7%) Query: 47 PNYLVIDESME-GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEK---MIAGARAGANSFLL 102 + L+++ S+ +L + ++ + + + D + + G N ++ Sbjct: 196 FDVLIVNISLSKDLLRLCSAIKSHLKTRSIPIMAI--VDDEDDESLITEITELGINDYIC 253 Query: 103 KPFNRETLRFAMRELPQMQKSKD 125 P N+ + + +K +D Sbjct: 254 VPINKSEFIARVTTQVKRKKYQD 276 >gi|83716332|ref|YP_438576.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|167576884|ref|ZP_02369758.1| DNA-binding response regulator IrlR [Burkholderia thailandensis TXDOH] gi|167615059|ref|ZP_02383694.1| DNA-binding response regulator IrlR [Burkholderia thailandensis Bt4] gi|257141635|ref|ZP_05589897.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|83650157|gb|ABC34221.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] Length = 230 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + GF+ + E + ++D + G Sbjct: 1 MK-VLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENY-DLAILDVMLPGCD 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR++ V +L + + G G + +L KPF+ L +R L + Sbjct: 59 GWTV-VRELRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117 Query: 121 QKSKD 125 +S D Sbjct: 118 GQSSD 122 >gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 222 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +LLV+ + GF+V + + E + +++D + G Sbjct: 1 MK-VLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEA-TENPFDIVILDIMLPGRS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E + +R + V L + GA+ +L KPF+ L +R L Sbjct: 59 GYEVLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALV 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|327403396|ref|YP_004344234.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327318904|gb|AEA43396.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 230 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+LL + + ++ + G+ V A + A E + ++ + D M + Sbjct: 5 RSILLAEDDDNLGQLLQTFLKAKGYQVELARNGKHAYEKY-TDGHFDFCIFDVMMPEMDG 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + V + +L + E + G +GA+ ++ KPF E L + + + Sbjct: 64 FTLAKEVRLIDPKVPILFLTAKAMKEDKLEGFESGADDYMTKPFTMEELLARIEAILRR 122 >gi|315653104|ref|ZP_07906029.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|315489469|gb|EFU79106.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] Length = 245 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + A EA + +++D M + Sbjct: 19 KVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMDPSITCIILDIMMPEMSGL 78 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ ++V + + I G GA+ ++ KPFN + +R L + + Sbjct: 79 -DLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRRSE 137 >gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI] gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + + D F V A + + + + + +++D + + F Sbjct: 2 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMLPEMDGF 59 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + + V +L E + G G + +++KPF L+ +R L + Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 123 SKDENQFL 130 S Q + Sbjct: 120 SLTTKQTI 127 >gi|258514099|ref|YP_003190321.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum acetoxidans DSM 771] gi|257777804|gb|ACV61698.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum acetoxidans DSM 771] Length = 448 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L++D + + G+ V +T + +E+ P+ +++D + + Sbjct: 4 RILVIDDEEKMCWALDRALSHEGYQVITSTEGLQGIALA-QEIEPSIVILDLWLPDIDGM 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A + + + V L E I + GAN ++ KPF + L+ +++ + + Sbjct: 63 EALRKIKEINAGMPVIMLTAHGTIETAIEAMKLGANDYITKPFKLDELKVLLKQALHVHQ 122 Query: 123 SKDENQFL 130 + E FL Sbjct: 123 LETEVDFL 130 >gi|239817851|ref|YP_002946761.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239804428|gb|ACS21495.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 249 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + F FG+ + A E + ++D + + Sbjct: 18 MPRILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGP-FDAAILDVMLPEMD 76 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ +D+ + L + + G GA+ ++ KPF L ++ + Sbjct: 77 GFALCREIRKE---SDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTIL 133 Query: 119 QMQKS 123 + Q+S Sbjct: 134 RRQRS 138 >gi|153873769|ref|ZP_02002241.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Beggiatoa sp. PS] gi|152069768|gb|EDN67762.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Beggiatoa sp. PS] Length = 173 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 4/129 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME---GV 59 +LL+VD + +V F + A + +A E E+E LP+ +++D M Sbjct: 10 TLLIVDDTPENIRVLFDFLIAHDFRILVAENGEDALENAEEE-LPDLILLDVMMPAGIDG 68 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ D+ V ++ D + GA ++ KPF +E + + Sbjct: 69 FETCRLLKDNAQTQDIPVIFMTALSDTLDKVKAFELGAVDYVTKPFQQEEVLARINTHLT 128 Query: 120 MQKSKDENQ 128 ++K + + Q Sbjct: 129 IRKLQKKLQ 137 >gi|94308987|ref|YP_582197.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93352839|gb|ABF06928.1| two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ +R+ R G V EA ++ P+ +++D + Sbjct: 8 TVLLVEDEPHIRRFVRESLQSEGCTVHEADTLKRGL-IDAGTRQPDVVILDLGLPDGDGM 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R+M T+V V L IA AGA+ +L KPF L +R L + Sbjct: 67 T-LIREMRTWTEVPVLVLSARTGEADKIAALDAGADDYLTKPFGVGELVARVRVLLRRH 124 >gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] Length = 1259 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 9/136 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + I R V + + GF V A + +A E + + +++D M + F Sbjct: 989 ILVVDDNEINRIVAKEILQSEGFQVSLAENGRQAVEKIQSG-QFDLVLMDCEMPEMDGFA 1047 Query: 63 -IAHVRQ-----MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R P ++ + L + AG N +++KP NR L + + Sbjct: 1048 ATRMIRNLAENGHPELANLPIVALTAQAVLGDKERCLAAGMNGYVMKPVNRSELIDTIVD 1107 Query: 117 LPQMQKSK-DENQFLD 131 + S E L Sbjct: 1108 CLSRKDSSVAEMDLLS 1123 Score = 76.0 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 7/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58 +L VD +H+ +V + +G V A + A E + + ++D M Sbjct: 841 RVLAVDDNHMNLQVIKEQLQSWGVEVSTAGNGRRALALLEDAAKRNVPYQLAILDHLMPE 900 Query: 59 VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + + + + L + L KP + L A+ Sbjct: 901 LDGLRLAHLINDHQMLHETRLLMLTSYEHTIPHAELKKLEMV-CLPKPVRQTRLLDALVA 959 Query: 117 LPQMQKSKDENQFLD 131 L + K + + ++ Sbjct: 960 LTGERSPKQKVEKVE 974 >gi|118578946|ref|YP_900196.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501656|gb|ABK98138.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 236 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 11/128 (8%) Query: 1 MDS------LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54 M+ ++LV+ + + + G + + +A E + E + +++D Sbjct: 1 MNRDTEKPHIMLVEDEIHLARGICFNLEEDGCRISHFATGEKALEALQFEH-FDLIILDV 59 Query: 55 SMEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112 + G+ F VR+M V + L + + G GA+ +L KPFN Sbjct: 60 MLPGMDGFQVCQSVRRMDG--RVPILMLTARSEESDRVHGLETGADDYLTKPFNLVEFLL 117 Query: 113 AMRELPQM 120 ++ + + Sbjct: 118 RVKGMLRR 125 >gi|330897949|gb|EGH29368.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330982029|gb|EGH80132.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + GF V A + + ++ P+ +++D + Sbjct: 4 KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ VR +D V + D + + R GA+ +++KP+N + + + + Sbjct: 63 TDVLSAVR---RCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLR 119 Query: 120 MQKSKDENQF 129 + N+ Sbjct: 120 RSQQNGSNER 129 >gi|302388419|ref|YP_003824241.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302199047|gb|ADL06618.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + + + G+ V +A + E +P+ +++D + + Sbjct: 6 TVLIIEDEDAICNFISAILSSNGYQVVKAKTGKEGLSLFTSH-VPDLILLDLGLPDIDG- 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I ++ + + V + + +A GA+ +++KPF L +R + Sbjct: 64 IEILKNLRQWSKTPVIVVSARGYEREKVAALDFGADDYIVKPFGTSELLARIRTAMR 120 >gi|262409339|ref|ZP_06085882.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|262352791|gb|EEZ01888.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 941 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L++D + +R R L + + V EA E K +P+ ++ D M G+ Sbjct: 695 SVLVIDDNADIRSYVRRLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGIDGI 752 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G GA+S++ KPF+ + L +R L Sbjct: 753 ECCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDS 812 Query: 121 QKSKDE 126 + + Sbjct: 813 HRRLKQ 818 >gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 234 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 7/128 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC--EKELLPNYLVIDESMEG-- 58 LLLV+ V + GF V A + EA + +++D + Sbjct: 2 RLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPAGAKPFGVVLLDLGLPDQD 61 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ T V + D I G GA+ +++KP++ L + + Sbjct: 62 GYEVCGKIRKR---TSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVA 118 Query: 119 QMQKSKDE 126 + + DE Sbjct: 119 RRTGATDE 126 >gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 250 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD + + F + A + E K + +++D + + Sbjct: 18 KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLI-KNHPFDIILLDVMLPDIDG 76 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R T+ + ++ + G G + ++ KPFN + + + Sbjct: 77 FELCRQIRN---YTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLR 133 Query: 120 MQKSKDE 126 Q E Sbjct: 134 RQHMTQE 140 >gi|223936913|ref|ZP_03628822.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [bacterium Ellin514] gi|223894482|gb|EEF60934.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [bacterium Ellin514] Length = 291 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 1/129 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + + +D G+ V S EA +E ++ D + G+ + Sbjct: 8 VLVVDDEKNMRLSLKTVLSDEGYAVRPVESAEEALNVLAQEEFL-LVITDARLGGISGYE 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + ++ + + + + +AGA +L KPF E L A+ + + Sbjct: 67 LIGKVHARWPELPILMITAYATPKLAVEAIKAGAFDYLAKPFAPEELLHAVARCSERHRL 126 Query: 124 KDENQFLDA 132 +N L A Sbjct: 127 MHQNATLRA 135 >gi|209964315|ref|YP_002297230.1| transcriptional regulatory protein YycF [Rhodospirillum centenum SW] gi|209957781|gb|ACI98417.1| transcriptional regulatory protein YycF [Rhodospirillum centenum SW] Length = 141 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 S+L+ D + + GF V T+ +E P+ +++D M Sbjct: 14 RSILVADDEPSIVLSLEFILKKAGFRVRVVTTGGAVLPAMTEET-PDLVLLDAMMPERDG 72 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R P + + V L + G GA+ ++ KPF+ L +R Sbjct: 73 YDVCQEIRSNPAWSAIPVIMLTARSREVERQKGLALGASDYVTKPFSTRELVETVRRHL 131 >gi|187920088|ref|YP_001889119.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187718526|gb|ACD19749.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 1195 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 2/122 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LL + H+ G + A + EA E E + +++D M + Sbjct: 1074 RTILLAEDDVRNIFALSHVLEPLGAKLQIARNGREALEALENGPEVHLILMDIMMPEMDG 1133 Query: 62 FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A +R+ P + + L + AGA+ ++ KP + + L R + Sbjct: 1134 LTAMGEIRRDPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLR 1193 Query: 120 MQ 121 + Sbjct: 1194 QR 1195 Score = 78.7 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 ++ V+ ++ R L ++ F A+S +++ P +++D + L Sbjct: 808 IIAVEDDAAFAEILRDLTHELDFDFVHASSAASGLALV-RDMRPAAVLLDVGLPDRSGLT 866 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++ PL + ++ + + GA + LKP R T+ A+R L Sbjct: 867 VLEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRLEARL 923 Query: 122 KSK 124 + + Sbjct: 924 QQR 926 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 6/95 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+++ +R+ R L + ++ EA E+ K + +V D ++ Sbjct: 928 KRVLVIEDDAPMRESIRALLQSENTEIVAVATLTEALEYLGK-FSFDCVVTDLALPDGTG 986 Query: 60 LEFIAHVRQMPLGTDVFVYYLLME---VDFEKMIA 91 + + + + V + E + Sbjct: 987 YDLLERLAANTAHAALPVIVYTGRMLSDEEEHRLR 1021 >gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806] gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 218 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+ D +R + G+ V A++ EA + P+ LV D M + Sbjct: 5 ILIADDDPGIRLAVKDYLELAGYSVVAASNGLEALNLLDT-YHPHLLVSDIKMPRLDGYS 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + VRQ P + V +L E+ I G + G + +L KPF E L+ +R L + Sbjct: 64 LVTKVRQQPEFRLLPVIFLTERGSTEERIRGYQVGCDIYLPKPFEMEELKAVIRNLLERS 123 Query: 122 KSKDENQF 129 + + Sbjct: 124 QMVQSERQ 131 >gi|157375453|ref|YP_001474053.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] gi|157317827|gb|ABV36925.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD I R++ + G V A + EA E E LP+ +++D M + Sbjct: 1 MSKVLVVDDDLIFRELLKEALECEGHEVISAQNGMEALSILECE-LPDIILLDIMMPKLD 59 Query: 61 EF-IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + R+ + V + + ++ I G GA+ FL KPF+ + L M L + Sbjct: 60 GFGLLAARKD----QIPVIVISAIDNEDERIKGYELGADDFLTKPFSIKELLVRMTALQR 115 Query: 120 MQKS-KDEN 127 + + EN Sbjct: 116 RVELTRAEN 124 >gi|312131403|ref|YP_003998743.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311907949|gb|ADQ18390.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 2/127 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M SLLL + + ++ + GF V A + +A + + ++D M Sbjct: 1 MKISLLLAEDDPNLGELLQDYLTAKGFQVTLAVNGEQAFDLFCLNEY-HLCILDVMMPKK 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + + +L + E + G GA+ +L KPF E L ++ + + Sbjct: 60 DGFSLAKDIRLHNEFIPIIFLTAKSMKEDTLKGFEVGADDYLTKPFLMEELLVRIKAIIK 119 Query: 120 MQKSKDE 126 + K+E Sbjct: 120 RTQGKEE 126 >gi|297156766|gb|ADI06478.1| two-component system sensor kinase [Streptomyces bingchenggensis BCW-1] Length = 1814 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 1694 KVLIVDDDIRNVFALTSVLEQHGLQVLYAENGREGIEVLEQHDDVVLVLMDIMMPEMDGY 1753 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 A +R+MP + + L + +AGA+ ++ KP + + L M + Sbjct: 1754 ATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIQAGASDYVTKPVDTDHLLAVMEQWM 1811 >gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 4 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L + + + G GA+ +L+KPF + L +R L + + Sbjct: 63 RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121 >gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ + +A + E EK + +++D + + Sbjct: 1 MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEA-DLVLLDIMLPEIN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ + L ++G AGA+ ++ KPF E L +R + Sbjct: 60 GL-EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|125717941|ref|YP_001035074.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125497858|gb|ABN44524.1| Two-component response transcriptional regulator (CheY-like receiver domain and a winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] Length = 232 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A E + K+ + + ++ D M + Sbjct: 3 KTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLDLFRKKSV-DLIITDIMMPNMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + + + I G GA+ F+ KPF+ L + + + Sbjct: 62 YDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 122 HRGGEIEQIE 131 >gi|49474886|ref|YP_032927.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49237691|emb|CAF26878.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 240 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LVD + G+ V T A + P+ + D M + Sbjct: 9 QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHP-PHLAIFDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L ++ + + Sbjct: 68 M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRA 126 Query: 122 KSKDE 126 ++++ Sbjct: 127 STRNQ 131 >gi|28898757|ref|NP_798362.1| putative two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153837817|ref|ZP_01990484.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ3810] gi|260364169|ref|ZP_05776875.1| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] gi|260877252|ref|ZP_05889607.1| response regulator receiver domain protein [Vibrio parahaemolyticus AN-5034] gi|260897802|ref|ZP_05906298.1| response regulator receiver domain protein [Vibrio parahaemolyticus Peru-466] gi|260901569|ref|ZP_05909964.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|28806975|dbj|BAC60246.1| putaive two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149748838|gb|EDM59677.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ3810] gi|308087625|gb|EFO37320.1| response regulator receiver domain protein [Vibrio parahaemolyticus Peru-466] gi|308090337|gb|EFO40032.1| response regulator receiver domain protein [Vibrio parahaemolyticus AN-5034] gi|308110905|gb|EFO48445.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|308115230|gb|EFO52770.1| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] gi|328474683|gb|EGF45488.1| putative two-component response regulator [Vibrio parahaemolyticus 10329] Length = 225 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + + F G + A + + + +++D + + Sbjct: 1 MKRVLLVEDNREIAGMLFDYFECAGMQLDYADNGELGLKLAMDN-AFDIILLDLMLPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + M+ G + GA+ +L KPF+ + L M L + Sbjct: 60 GLTLCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMTALIKR 119 Query: 121 QK 122 + Sbjct: 120 YR 121 >gi|172057018|ref|YP_001813478.1| response regulator receiver modulated serine phosphatase [Exiguobacterium sibiricum 255-15] gi|171989539|gb|ACB60461.1| response regulator receiver modulated serine phosphatase [Exiguobacterium sibiricum 255-15] Length = 367 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 5/136 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP---NYLVIDESMEG- 58 S+L+VD + L + G+ V +A S EA E E L + +++D M G Sbjct: 2 SILVVDDEFTNLMILERLLENEGYDVVKAMSGEEALELMEDPLFIETLDVVLLDVEMPGI 61 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ +R+ ++ + + + E + G AGA+ + KP + L +R Sbjct: 62 SGIDATRLIRKRFGLDELPIVIVSGRSNEEDIADGLDAGASDYTTKPIRKTELLARVRNA 121 Query: 118 PQMQKSKDENQFLDAI 133 ++++ D + + + Sbjct: 122 MSLKQAIDARKRYEKV 137 >gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp. HGF5] gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp. HGF5] Length = 239 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 + +VD +R + G+ + E + P+ V+D + G+ F Sbjct: 7 IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNP-PDMWVLDIMLPGMDGFE 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + + + I G G++ +++KPF+ L ++ Sbjct: 66 LCRRIRAEAE---VPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSR 121 >gi|299147501|ref|ZP_07040566.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298514779|gb|EFI38663.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1333 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 SLL+++ + VR+ LF+ ++++EA E KE LP+ ++ D M Sbjct: 1086 KSLLIIEDNEDVREYICSLFSSR-YIIYEAGDGEEGVRIA-KEQLPDLVISDVMMPVKDG 1143 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118 F +R + + L + + ++ G+ +GA+ +++KPFN E L+ + L Sbjct: 1144 FACCREIRGRQETAHIPILLLTAKSEDTDILQGSYSGADDYMMKPFNPEVLKTKVDNLIL 1203 Query: 119 QMQKSKD 125 Q ++ K Sbjct: 1204 QRERLKR 1210 >gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 230 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ H + ++ H GF + A E +++ + +++D + Sbjct: 1 MQRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSY-DLILLDIMLPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F+ +R+ +++ V + + G GA+ ++ KPF+ L ++ Sbjct: 60 GMDFLKIIREK---SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAI 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 242 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 6/119 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + G S +A + KE + ++ID M G+ F Sbjct: 12 KILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEP-FDLVLIDIMMPGMDGF 70 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A++RQ+ TD + +L + ++ G GA+ +++KPF L +R + Sbjct: 71 ELCANLRQV---TDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVARIRARLR 126 >gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 233 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD + V + G+ V A EA + E P+ +V+D + Sbjct: 4 KILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEV-YKPHIVVLDLMLPVINGY 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + G ++ + L + D I G GA+ ++ KPF+ L ++ L + Sbjct: 63 DVCKRL----EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRR 118 >gi|210617395|ref|ZP_03291559.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787] gi|210149325|gb|EEA80334.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787] Length = 246 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+V+ + + + G+ V EA + E + + +V+D ++ G + Sbjct: 22 RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAE-MYDLIVLDLNLPGVDGM 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ + V L I G AGAN ++ KPF+ + L +R L + Sbjct: 81 EILRELRKEDE--ETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRR 138 Query: 121 QKSKD 125 + + Sbjct: 139 KFIQK 143 >gi|239825816|ref|YP_002948440.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239806109|gb|ACS23174.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 233 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + + + V S EA + +++D MEG+ Sbjct: 4 KKILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALLRIINNN-FDLIILDIMMEGIDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R D + ++ + E I G + ++ KPF+ + L+ + + Sbjct: 63 MELCSMIRDR---VDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLR 119 Query: 120 MQKSKDENQF 129 ++ N+ Sbjct: 120 REERIRSNER 129 >gi|168206898|ref|ZP_02632903.1| DNA-binding response regulator KdpE [Clostridium perfringens E str. JGS1987] gi|170661686|gb|EDT14369.1| DNA-binding response regulator KdpE [Clostridium perfringens E str. JGS1987] Length = 237 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 46/121 (38%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M S+L+++ +R + A + + P+ +++D + + Sbjct: 1 MKPSILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGM-ILAISKRPDIIILDLGLPDM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I ++++ ++ + + + I GA+ +L KPF+ + L +R + Sbjct: 60 DG-IEIIKKVREWSNCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIR 118 Query: 120 M 120 Sbjct: 119 K 119 >gi|91199976|emb|CAJ73018.1| strongly similar to two component response regulator of OmpR/PhoB family [Candidatus Kuenenia stuttgartiensis] Length = 223 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + F V E + +V+D + + F Sbjct: 2 RILVIEDEKKLANYLKKGLEEHHFAVDTCNDGEEGLFMINSHAY-DLVVLDIMLPLMDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G + L + E + G GA+ +L+KPF+ L +R L + Sbjct: 61 EILRTARKSGLRMPFLLLTAKDAIEDKVRGLDLGADDYLVKPFSFIELTARIRALIRR 118 >gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 223 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G++V +A E F + +++D + + Sbjct: 2 RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 123 SKDENQFL 130 ++ + Sbjct: 121 GHASSEII 128 >gi|330954699|gb|EGH54959.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + GF V A + + ++ P+ +++D + Sbjct: 4 KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ VR +D V + D + + R GA+ +++KP+N + + + + Sbjct: 63 TDVLSAVR---RCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLR 119 Query: 120 MQKSKDENQF 129 + N+ Sbjct: 120 RSQQNGNNER 129 >gi|315651479|ref|ZP_07904502.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium saburreum DSM 3986] gi|315486299|gb|EFU76658.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium saburreum DSM 3986] Length = 230 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 7/127 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D + + G V A + K+ P+ +++D M Sbjct: 1 MSRILIIDDEKELVMLLADELKAVGHEVLSAYDGETGIKLARKQ--PDLIILDIMMPKAD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R L + +L I G G + +++KPF + L + Sbjct: 59 GFEVCNAIRDDVL---CPIIFLSARQSEADKIKGLNIGGDDYIVKPFGLKELMAKIEANL 115 Query: 119 QMQKSKD 125 + +K Sbjct: 116 RREKRSQ 122 >gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 235 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ ++K+ + +F + G+ V + + +V+D + + Sbjct: 12 TQILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRY-SAVVLDLVLPNIFG 70 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ D+ V + D + GA+ ++ KPF+ L ++ + Sbjct: 71 RDVCKTIKSEQE--DMPVIVVSAITDVADKVLLLELGADDYVTKPFSPRELMARVQAAMR 128 Query: 120 MQK 122 ++ Sbjct: 129 RRQ 131 >gi|322436044|ref|YP_004218256.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321163771|gb|ADW69476.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 238 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +LLV+ +R+ + GF + EA S EA + +++D +M G+ Sbjct: 11 VLLVEDDRSIRRGLFATLSAMGFALGEAESGEEALLKLHVLPY-DAVLMDLNMPGMGGIE 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + + + + E I AGA+ F+ KPF L +R + Q+ Sbjct: 70 ACRRVRKEYPHISILVVTVRDREEDKIEALDAGADDFVTKPFKMGELAARIRSAVRRQR 128 >gi|239908512|ref|YP_002955254.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239798379|dbj|BAH77368.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 380 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 4/132 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDF-GFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M +L+ D + I R+V + G+ V EA + +A + E P+ +++D M G Sbjct: 1 MTQVLIADDNAIFREVLKRHVASLFGYDVIEAATGLDAVDLAET-RHPDLILLDLVMPGL 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +E I +R P DV + +L E D AGAN F+ KP++R L + Sbjct: 60 DGIEVIRRIRANPRLADVPIIFLSAETDRRVWAEALSAGANDFMPKPYHRSELAARINLH 119 Query: 118 PQMQKSKDENQF 129 ++ E + Sbjct: 120 LKLASLGQELRR 131 >gi|225012590|ref|ZP_03703025.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-2A] gi|225003123|gb|EEG41098.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-2A] Length = 230 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + ++ R+ G+ +F A+ EA + +KE LP+ +++D M + Sbjct: 7 KILLVDDEPDIIEIVRYNLEQVGYQIFSASDGLEALKVADKE-LPHLIILDVMMPNLNGI 65 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + + +L + +A GA+ ++ KP + L ++ L + Sbjct: 66 ETCEKLRQDDRFLNTIIMFLTARGEDYSFVAAFDVGADDYVTKPIKPKVLVSKVKGLLRR 125 >gi|222147052|ref|YP_002548009.1| two component response regulator [Agrobacterium vitis S4] gi|221734042|gb|ACM35005.1| two component response regulator [Agrobacterium vitis S4] Length = 240 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ LVD + G+ V T A + P + D M + Sbjct: 1 MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARP-PQLAIFDIKMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ V +L + + + G + GA+ F+ KPF++ L ++ + + Sbjct: 60 GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118 Query: 121 QKSKD 125 +++ Sbjct: 119 AANRE 123 >gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD + ++ + GF V A + EKE + + V+D + + F Sbjct: 4 KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETV-DVAVLDVMLPDIDGF 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + V L + + I G GA+ ++ KPFN + ++ + + Sbjct: 63 -QLLQNIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQ 121 Query: 123 SKDE 126 ++ Sbjct: 122 RYNQ 125 >gi|119483261|ref|ZP_01618675.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119458028|gb|EAW39150.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 381 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 6/136 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +LLVD V L D G+ V S +A + + P +++D M + Sbjct: 13 ILLVDDELNNLAVLSALLIDQGYTVRRVLSGQKALDLMKSNQPPALVLLDIMMPEMDGYQ 72 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V +L D + + G G ++ KPF + ++ ++ Sbjct: 73 VCQKMKSDEKTRGIAVIFLSALDDVKNKVKGFEVGGADYITKPFESLEVITRVQHQLGLR 132 Query: 122 KSKD----ENQFLDAI 133 K + E Q +++ Sbjct: 133 KLQQQIKIEAQLRESL 148 >gi|12964068|emb|CAC29256.1| putative regulatory protein [Bartonella quintana] Length = 240 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LVD + G+ V T A + P+ + D M + Sbjct: 9 QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHP-PHLAIFDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L ++ + + Sbjct: 68 M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRA 126 Query: 122 KSKDE 126 ++++ Sbjct: 127 STRNQ 131 >gi|51598676|ref|YP_072864.1| response regulatory protein [Borrelia garinii PBi] gi|51573247|gb|AAU07272.1| response regulatory protein [Borrelia garinii PBi] Length = 307 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 LL+VD S + ++ + V AT+ +A + EK+ P+ +++D + Sbjct: 15 QKLLIVDDSPTNLDLLVNILQGA-YEVEVATNGLDALKQVEKDS-PDLILLDIGLPDING 72 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ P ++ V ++ + + G G ++LKPFN + ++ + Sbjct: 73 YEVCRKLKSDPDTKEIPVIFISSRGSTDAQLEGFNVGGVDYILKPFNSRIIDARVKTHLE 132 Query: 120 MQKSKD 125 +++ +D Sbjct: 133 LKRLRD 138 >gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 7/129 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+VD + K+ F + +AT+ EA + KE N +++D + Sbjct: 5 KILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQ-LTKEKTFNLILLDIMLPDISG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ TD + ++ + G G + ++ KPFN + ++ + + Sbjct: 64 FELCTEIRRN---TDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILR 120 Query: 120 MQKSKDENQ 128 QK + ++ Sbjct: 121 RQKMYERSE 129 >gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + ++ + G+ V + + + +++D + G Sbjct: 1 MKQILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTY-DLIIVDLMLPGKD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + VR++ ++ + + + I G GA+ +L KPF+ L ++ Sbjct: 60 GY-EIVREVREKYEIPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHMLR 118 Query: 121 QKSKDENQ 128 + N+ Sbjct: 119 YERLSGNR 126 >gi|327402108|ref|YP_004342946.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327317616|gb|AEA42108.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 5/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LLV+ I+ + + V A A E K+ + +++D ++ G Sbjct: 1 MKNILLVEDDAILSRNISDALLEENMQVEFAYDGNIA-EKMLKKTNFDCVILDVNLPGKN 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + R T V L + E I G GA+ +L KPF L ++ L Sbjct: 60 GYKICKNFR--SYNTQTPVIMLTAFDELEDKIQGYDCGADDYLTKPFYMRELLLRIQSLL 117 Query: 119 QMQKSKDENQF 129 + ++ +N+F Sbjct: 118 KRSENLGKNEF 128 >gi|291570514|dbj|BAI92786.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 356 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD V L +D + + ++ A + L PN +++D M + Sbjct: 6 TSILIVDDDPDNFDVIETLLSDQNYQLHYTSNGTRAIASLDI-LQPNLILLDVMMPDMDG 64 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 ++ + + + + E + + GA+ F+ KP NR L + + + Sbjct: 65 QQVCRAIKDIRKWQTLPIIMVTALDSKEDLARCLQTGADDFISKPINRVELVARVNSMLR 124 Query: 120 MQKSKDENQFLDAI 133 ++ D+ L+AI Sbjct: 125 IKSQYDD---LEAI 135 >gi|283788574|ref|YP_003368439.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282952028|emb|CBG91757.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+ LV+ + ++ GF V A E + P+ ++D + + F Sbjct: 5 SVWLVEDEQGIADTLIYMLQQEGFTVEAFERGLPALER-SRHQCPDVAILDVGLPDISGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + V +L D + G GA+ ++ KPF+ + +R L + K Sbjct: 64 ELCRRLLERHPSLPVLFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 >gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ ++++ + + V A+ E + K+ + +++D M + F Sbjct: 13 ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQS-FDLILLDVMMPNLNGFE 71 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + +++ + L + + + G G + ++ KPF+ L + + + Sbjct: 72 VA-KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130 Query: 124 KDENQFL 130 + L Sbjct: 131 QSTENHL 137 >gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1821 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 3/119 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL + + + GF V A + EA + ++ P+ +++D M + Sbjct: 1704 ILLAEDNEANIITLTDYLHSKGFRVVLARNGIEAVQQAKQHT-PDVILMDIQMPEMDGLE 1762 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + AGA ++ KP + L + + Sbjct: 1763 STRQIRADSGLPRMPIIAVTALAMPGDREKCLAAGATEYMAKPIRLKKLVTLIEQYLHR 1821 Score = 73.7 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+V+ S + G V + ++ P+ +++D + E Sbjct: 1575 LVVEDSDASANHIARYLGELGITVLIHPQGEGTIDTV-QQFNPDVIILDILLPHISGWEV 1633 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +++ + V + + GA +LLKP +R L+ + +L Sbjct: 1634 LVQLKENSATQSIPVV---VVSVVDDPTQALELGAADYLLKPVSRPQLQSVLSQLF 1686 >gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 232 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 4 NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQLAILDIMMPQMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 63 IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119 Query: 120 MQKSKDEN 127 ++N Sbjct: 120 RYTYFNQN 127 >gi|146280681|ref|YP_001170834.1| osmolarity response regulator [Pseudomonas stutzeri A1501] gi|145568886|gb|ABP77992.1| two-component response regulator OmpR [Pseudomonas stutzeri A1501] gi|327478949|gb|AEA82259.1| osmolarity response regulator [Pseudomonas stutzeri DSM 4166] Length = 244 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD +R++ ++ G+ V + + + L +V+D M G Sbjct: 12 KILIVDDDARLRRLLERFLDEQGYRVRTVENTEQ-MDRLLSRELFQLVVLDLMMPGEDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 A R + + L + D I G GA+ +L KPFN L +R + + Q Sbjct: 71 SACRRLREANNQIPIIMLTAKGDEASRIQGLEQGADDYLAKPFNPRELLARIRAVLRRQA 130 Query: 123 SK 124 + Sbjct: 131 PQ 132 >gi|302335659|ref|YP_003800866.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301319499|gb|ADK67986.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + +D + CE L + +++D + G+ Sbjct: 2 NILVVEDERNLADAIVRILSDADYNAEAVYDGKSGLTACESGLY-DAVIMDGMLPGMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + V L + G AGA+ ++ KPF L +R L + Q Sbjct: 61 EVVRRLRRENNSIPVLMLTARTSTSDKVEGLDAGADDYMTKPFESPELLARLRALTRRQ 119 >gi|237715036|ref|ZP_04545517.1| two-component system response regulator [Bacteroides sp. D1] gi|262409016|ref|ZP_06085561.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|294645619|ref|ZP_06723312.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294809922|ref|ZP_06768596.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444869|gb|EEO50660.1| two-component system response regulator [Bacteroides sp. D1] gi|262353227|gb|EEZ02322.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|292639064|gb|EFF57389.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294442768|gb|EFG11561.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295087844|emb|CBK69367.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacteroides xylanisolvens XB1A] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + G+ V A S EA + + +++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAMKMDISSY--HLILLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ V + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|218665330|ref|YP_002424618.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517543|gb|ACK78129.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC 23270] Length = 236 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R + FGF V + + E E + +V+D + Sbjct: 7 KQILVVDDDLRLRGLVESHLQGFGFGVRGMSDGRQ-IESLLAEAPVDLIVLDLGLPHEDG 65 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +RQ DV + L D I G GA+ +L KPF+ L ++ + + Sbjct: 66 LQICRRLRQH---HDVPILMLTARGDEVDRILGLEMGADDYLAKPFHPRELVARIQAILR 122 Query: 120 MQKSKDE 126 + D Sbjct: 123 RVRGADR 129 >gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 11/138 (7%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 MD +L+V+ + ++ + GF V + + +++D + V Sbjct: 1 MDKILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYK-LIILDLMLPNVD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F VR+ ++ V + + D I G GA+ ++ KPF+ L ++ Sbjct: 60 GFEICKRVREE---KNIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116 Query: 119 QMQKSK-----DENQFLD 131 + EN+ ++ Sbjct: 117 ARYERLIGTGMKENEMIE 134 >gi|89899892|ref|YP_522363.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344629|gb|ABD68832.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 239 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M LL+V+ ++R G V A+ A + + + +++D + Sbjct: 1 MSHLLIVEDDELLRDALGAQLTQAGHTVTPASDGERA-QALLESNRFDGVILDLGLPKVS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +R+ + V L E + G AGA+ +L KPF+ L+ + + Sbjct: 60 GMEVLRWLRKR--LPALPVLVLTARDGVEDRVQGLNAGADDYLTKPFSMAELQARLGAML 117 Query: 119 QMQKS 123 + + Sbjct: 118 RRARL 122 >gi|150389691|ref|YP_001319740.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949553|gb|ABR48081.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ K+ + + F A +A E++ + +++D M + Sbjct: 1 MFNILIVEDDANTTKLICAVLKRGNYNCFTARDGLDALSMMERQ-YFDLIILDLMMPRMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +G + + + + + + G G + ++ KPF+ + + F ++ L Sbjct: 60 GYQLCKELR--DVGENTPILMITAQQEIKDKHRGFLVGTDDYMTKPFDEQEMLFRIKALL 117 Query: 119 QMQKSKDENQF 129 + + +E++ Sbjct: 118 RRAQIVNEHKL 128 >gi|329923332|ref|ZP_08278816.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941424|gb|EGG37716.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 8/134 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +++L+VD + ++ R + F V A EA ++ + +V+D M G Sbjct: 5 NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQH-AIHCMVLDIMMPGQNG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R + V + +L D I G G + +++K + + ++ + + Sbjct: 64 FELCRRIRAE---SHVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 120 Query: 120 MQKSKD--ENQFLD 131 ++ E + LD Sbjct: 121 RSATRQPVEGRVLD 134 >gi|237713754|ref|ZP_04544235.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229446201|gb|EEO51992.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 926 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L++D + +R R L + + V EA E K +P+ ++ D M G+ Sbjct: 680 SVLVIDDNADIRSYVRRLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGIDGI 737 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G GA+S++ KPF+ + L +R L Sbjct: 738 ECCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDS 797 Query: 121 QKSKDE 126 + + Sbjct: 798 HRRLKQ 803 >gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 962 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 5/117 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+ + +R+V + F+V A E + + +++D M + F Sbjct: 841 RLLIAEDDATIRQVLAAMLQKLQFVVDFAEDGETVVEKWRQGEY-DLILMDVQMPRLDGF 899 Query: 63 --IAHVRQMPL--GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115 +R+ G + + + E AG + ++ KP N + ++ Sbjct: 900 QATRAIREQEQEQGARIPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKECIEKVK 956 >gi|197118968|ref|YP_002139395.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088328|gb|ACH39599.1| sigma-54-dependent transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 457 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 2/133 (1%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD +R+ L G++V +A + +A C E ++ D M G+ Sbjct: 1 MRARILVVDDELSMREFLSILLEGEGYLVDQAENAEDAL-RCMGEQRYEMVISDVLMPGL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + V + E+ + + GA ++ KPF E ++ +R + Sbjct: 60 GGIELLSRIKSESPETAVLMITAFTTAEQAVEAMKLGAYDYIGKPFKVEEVKVLVRNALE 119 Query: 120 MQKSKDENQFLDA 132 Q EN+ L A Sbjct: 120 KQSLVQENKRLKA 132 >gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 230 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 1/126 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + G+ V A+ + P+ +++D + G+ Sbjct: 11 ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQN-PDLVLLDWMLPGISGLE 69 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R G V V + + AG AGA+ +++KPF+ + L +R + + Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 124 KDENQF 129 + Q Sbjct: 130 SRDGQL 135 >gi|75910180|ref|YP_324476.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75703905|gb|ABA23581.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 431 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L VD + +V ++ F V+ A S +A + E +LLP+ +++D M G+ F Sbjct: 21 ILAVDDNPNNLQVLSSFLDNSSFEVWAARSGEKALQRLENDLLPDLILLDVMMPGMDGFE 80 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ V ++ + E + G + GA ++ KPF E + + +++ Sbjct: 81 TCQRLKSDQRFCDIPVVFMTALSETEDKVKGFQLGAVDYITKPFQHEEVLVRIEHQLKLR 140 Query: 122 KSKD 125 Sbjct: 141 HLTA 144 >gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 224 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + F V EA E+ + +++D M + Sbjct: 1 MK-ILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDY-DVIILDVMMPKMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + V L ++ I G GA+ +L+KPF+ L +R L + Sbjct: 59 GYEVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR 118 Query: 121 QKSKDENQF 129 + N+ Sbjct: 119 KYGNISNEL 127 >gi|28210358|ref|NP_781302.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani E88] gi|28202795|gb|AAO35239.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani E88] Length = 220 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L +D + + + G V ++ + +K L + +++D M + Sbjct: 1 MACILAIDDEEGILTIIKSALEKEGHNVTTVSNPTCLLK--DKYLKYDLILLDVMMPEID 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + D + +L + + ++ G G + ++ KPF LR + Sbjct: 59 GFSLCKEIRNL---VDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHL 115 Query: 119 QMQKSKDEN 127 + + + +N Sbjct: 116 RREHREKQN 124 >gi|89091823|ref|ZP_01164778.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92] gi|89083558|gb|EAR62775.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92] Length = 235 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 5/127 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 LL+VD + ++ G+++ A + EA E ++ +++D M G Sbjct: 4 QRLLMVDDDVELCELIGDYLRHEGYLIEFAHNADEACEQLKRSERFALMILDVMMPGRTG 63 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE + +R + V L + I G GA+ +L KP N L +R + + Sbjct: 64 LELLQQIR---PKVQIPVIMLTGRGEDIDRILGLEMGADDYLSKPCNPRELLARIRAVLR 120 Query: 120 MQKSKDE 126 + + Sbjct: 121 RAEPQQR 127 >gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ + GF+ EA E K++ P+ +++D + G Sbjct: 5 QQVLVVEDEPKIAQILVDFLSLEGFLTHVVHDGDEA-EAAIKQVNPDCVILDLMLPGKDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ + V + L VD + G GA+ ++ KPF+ + ++ L + Sbjct: 64 LSICKDVRK---FSHVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLR 120 Query: 120 MQKS 123 Sbjct: 121 RAAL 124 >gi|329926298|ref|ZP_08280817.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328939333|gb|EGG35690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 1050 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L VD + ++ + + + + S EA E + + L+ D M + Sbjct: 720 RILAVDDDPVNLRILAGILSAEPYNLNVVASAAEALELLGSQPW-DLLIADVMMPEMSGY 778 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E VR+ +++ V L + + AG ++GAN ++ KP + LR+ + L + Sbjct: 779 ELTRTVRERFNASELPVLLLTARGESADVYAGFQSGANDYVTKPVDPVELRYRIHSLITL 838 Query: 121 QKSKDENQFLDA 132 + + D+ ++A Sbjct: 839 KHTVDDRLRMEA 850 >gi|325280518|ref|YP_004253060.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] gi|324312327|gb|ADY32880.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ V + + V + + E K+ + ++D M + Sbjct: 3 QKILLVEDDPCFGSVLKSYLELSDYEVTLCVNGNDGLEAFRKDK-FDICLLDVMMPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F + + +V Y+ + E M G GA+ +++KPF+ E L ++ + Sbjct: 62 FTLGKKIREIDGNVPFVYITAKSMKEDMKQGYEIGADDYIVKPFDSEVLILKIKAILSRS 121 Query: 122 KSKD 125 K ++ Sbjct: 122 KHEE 125 >gi|312793945|ref|YP_004026868.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181085|gb|ADQ41255.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 234 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 + +VD + ++ G+ V + E K P+ +++D + E Sbjct: 6 VYVVDDEKDILELVSEYLIQKGYAVKTFENGESFLEEFGKSE-PDIVILDIMLPDIDGYE 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +DV + L + + + G G++ ++ KPF+ L ++++ + Sbjct: 65 ICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120 >gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLV+ + + G+ + A EA E E + + +++D + + Sbjct: 5 RILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEY-DLILLDIMIPNLNGI 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +RQ + V + L + D + G AGAN +L KPF E L +R + Sbjct: 64 EVCRRIRQ---FSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVYERD 120 Query: 121 QKSKDE 126 + K++ Sbjct: 121 KALKNQ 126 >gi|170749613|ref|YP_001755873.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656135|gb|ACB25190.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1936 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LVD G V A + + + + ++ID M G+ + Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDGIALLQTNPNIDAMLIDIMMPGMDGY 1854 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + + + AGA+ ++ KP + + L +R Sbjct: 1855 ETMRAIRAQSAFRSLPLIAVTAKAMKGDREKCLDAGASDYVSKPIDMDQLLAVLRVQLAR 1914 Query: 121 Q 121 + Sbjct: 1915 R 1915 Score = 93.3 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 6/115 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + V L + GF A A + P+ + +D + + Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHR-FKPHAITLDIGLPDMDGWA 1588 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + ++ + ++ + + + G RAGA FL KP RE L A+ Sbjct: 1589 LLDLLKNDARTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640 Score = 62.1 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 3/84 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +LLLV+ R L ++ +F + A E + +ID + G Sbjct: 1650 RNLLLVEDDENQRASITALLDEEDVKIFGVGTATAALEAL-TGGRFDCAIIDLGLPDIGG 1708 Query: 60 LEFIAHVRQMPLGTDVFVYYLLME 83 E I +R G ++ + Sbjct: 1709 SELIERIRATQEGEELPIIVYTGR 1732 >gi|153003413|ref|YP_001377738.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152026986|gb|ABS24754.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 1816 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 3/130 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+VD L G V A + E + + +++D M Sbjct: 1686 KKILIVDDDVRNVFAITALLEQHGASVVYAENGRRGLEVLKANPGVDLVLMDVMMPELDG 1745 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118 E + +R +P + + L + +GA+ ++ KP E + +R Sbjct: 1746 YETMRAIRHLPEFERLPIIALTAKAMKGDREKCVESGASDYVTKPVKAEQILSLLRVWLY 1805 Query: 119 QMQKSKDENQ 128 + + + E + Sbjct: 1806 RRPEPRGEAR 1815 >gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 2/132 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ R + G++V + E E + LV+D + G Sbjct: 1 MMRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEY-DLLVLDVMLPGQD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V +L D + G GA+ +L KPF+ L ++ + + Sbjct: 60 GWT-LLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRR 118 Query: 121 QKSKDENQFLDA 132 + +D N A Sbjct: 119 GQPRDSNTLRVA 130 >gi|94986195|ref|YP_605559.1| multi-sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] gi|94556476|gb|ABF46390.1| multi-sensor signal transduction histidine kinase [Deinococcus geothermalis DSM 11300] Length = 1140 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +LLVD + +R L V E LP+ ++ D M Sbjct: 631 VLLVDDNADLRDYIARLLAPQ-HDVRVVPDGQA-ALEAVAEALPDLVITDVMMPRLDGFG 688 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R+ P ++ V L E + G AGA+ +L+KPF+ L + + Sbjct: 689 LLRALRENPRTRELPVIMLSARAGEEARVQGLMAGADDYLVKPFSARELLAKVGAHLALA 748 Query: 122 KSKDE 126 + + E Sbjct: 749 RLRRE 753 >gi|332559683|ref|ZP_08414005.1| response regulator receiver protein [Rhodobacter sphaeroides WS8N] gi|332277395|gb|EGJ22710.1| response regulator receiver protein [Rhodobacter sphaeroides WS8N] Length = 418 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S R++ +G+ V EA + EA C+ + + ++ D M G+ Sbjct: 14 RHVLIVDDSRAQRRLVALSLARWGYRVSEAATASEALALCQGGDV-DIVLSDWMMPGMSG 72 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116 LE +R +P + L +++ G GA+ +L+KP + LR +R Sbjct: 73 LELCRRIRALPGEAYCYFILLTSRSGTGEVVDGLDCGADDYLVKPAAPDELRARLRAGER 132 Query: 117 LPQMQ-KSKDENQFLD 131 + MQ + D+NQ L+ Sbjct: 133 VLSMQAELVDKNQLLE 148 >gi|301060591|ref|ZP_07201426.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] gi|300445294|gb|EFK09224.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2] Length = 449 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M S+L+VD +R+ + + G+ V A A E + +++D M G+ Sbjct: 4 MPSILVVDDEAAIRESLKDWLMEDGYGVALAADGKTAVAMVE-GSQYDVILLDLKMPGMD 62 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D + + + + + GA +L+KPF+ + + ++++ Sbjct: 63 GLETMRCIKEISPDSEILMMTAYASVDTAVQAMKEGAFDYLVKPFDPDEVELQIKKIVAH 122 Query: 121 QKSKDENQFL 130 ++ + EN L Sbjct: 123 REMRFENIML 132 >gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] Length = 1137 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-----ELLPNYLVIDESM 56 ++L+V+ + G V A + EA E E+ E + +++D M Sbjct: 1012 RTILVVEDDVRNVFALSSVLEPTGARVEIARNGREALEALERSNAAGESAVDLVLMDIMM 1071 Query: 57 EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + F +A +R+ P + + L + + AGAN ++ KP + E L + Sbjct: 1072 PEMDGFAAMAEIRRRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1131 Query: 115 R 115 R Sbjct: 1132 R 1132 Score = 91.0 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+++ ++ L ++ GF A++ + E P+ +V+D ++ L Sbjct: 745 TILVIEDDPRFARILCDLAHEMGFQCVIASTGSDGLAAAL-EYGPSAVVLDMNLPDFSGL 803 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 + +++ P + V+ + + + M GA + LKP RE L A+ Sbjct: 804 GVLDQLKRNPATRHIPVHVVSV---ADYMQEAMERGAIGYALKPVKREELEQAL 854 Score = 75.2 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 3/96 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ R+ HL G + A + +A + K + +V+D + Sbjct: 865 MRRVLVVEDDARQRESVHHLLATDGVEIVGAATARQALDLL-KGSTFDCVVMDLHLPDLN 923 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94 E + + + + V R Sbjct: 924 GYELLQQMAEQEEVSFPPVIVYTGRNLSRDEEQQLR 959 >gi|126463630|ref|YP_001044744.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|126105294|gb|ABN77972.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] Length = 418 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+VD S R++ +G+ V EA + EA C K + ++ D M G+ Sbjct: 14 RHVLIVDDSRAQRRLVALSLARWGYRVSEAATASEALALC-KGGDVDIVLSDWMMPGMSG 72 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116 LE +R +P + L +++ G GA+ +L+KP + LR +R Sbjct: 73 LELCRRIRALPGEAYCYFILLTSRSGTGEVVDGLDCGADDYLVKPAAPDELRARLRAGER 132 Query: 117 LPQMQ-KSKDENQFLD 131 + MQ + D+NQ L+ Sbjct: 133 VLSMQAELVDKNQLLE 148 >gi|329769598|ref|ZP_08261002.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325] gi|328838353|gb|EGF87962.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325] Length = 238 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L++D +RK+ G++V EAT+ + E + + +++D + + Sbjct: 4 RVLVIDDEERIRKLLIMYLEKEGYIVDEATNGQDGLERLKYMDY-SCVLLDVHLPMLNGK 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R+ V + + D + + G GA+ +++KPF+ L + + Q Sbjct: 63 TILAELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRVNAILQR 119 Query: 121 QK 122 K Sbjct: 120 TK 121 >gi|312959224|ref|ZP_07773742.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens WH6] gi|311286484|gb|EFQ65047.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas fluorescens WH6] Length = 465 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + G VF A + A + E+E + ++ D M G+ Sbjct: 4 NILVVDDEPKLCDLLASALGQNGIQVFIAGNGLHALKVLEQED-IDLVISDWRMPGMDGP 62 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A ++ V V + + + R GA ++ KPF+ + L + + Q Sbjct: 63 ALLAEIKVR--YPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQF 120 Query: 121 QKSKDENQFLDA 132 + +N L A Sbjct: 121 RDILRDNARLRA 132 >gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto BEST195] Length = 230 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ H + ++ H GF + A E ++ + +++D + Sbjct: 1 MQRILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSY-DLVLLDIMLPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F+ +R+ ++V V + + G GA+ ++ KPF+ L ++ Sbjct: 60 GMDFLKIIREK---SNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAI 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|228942401|ref|ZP_04104939.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975334|ref|ZP_04135890.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981970|ref|ZP_04142264.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228777731|gb|EEM26004.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228784316|gb|EEM32339.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817242|gb|EEM63329.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 219 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIA 64 VD +R + R G+ V A EA E + P+ L++D + E + Sbjct: 2 VDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTDGYELLR 59 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 R+ D+ V L + + G + GA+ ++ KPFN L ++ + + K Sbjct: 60 LFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKT 117 Query: 125 D 125 + Sbjct: 118 E 118 >gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 236 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L + + + G GA+ +L+KPF + L +R L + Sbjct: 73 HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130 >gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] Length = 242 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + + GF VF A + EA E ++D M + Sbjct: 14 NSILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 72 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 73 IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 129 Query: 120 MQKSKDEN 127 ++N Sbjct: 130 RYTYFNQN 137 >gi|256829655|ref|YP_003158383.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578831|gb|ACU89967.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 979 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGVLE 61 +LLVD + ++V + D G + A + EA + E+ P + +++D +M + Sbjct: 852 RVLLVDDNLFNQEVACAILEDVGAVTAVAFNGLEALQRLEEAKDPYDVVLMDMAMPVMDG 911 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R M D+ + + A AG + L KP + +R + Sbjct: 912 LEASRRIRSMEKYRDLPIIAMTANAMKGDREACLAAGMSDHLAKPIDITEFYAVLRRCVR 971 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE- 61 +L+VD + + GF S +A ++ + +++D M + Sbjct: 707 VLVVDDNPAALQSLVLCVTRLGFACEAVGSGQQALTAMLRDPGRFSLVILDWDMPELDGP 766 Query: 62 -FIAHVRQMPLGTDVFVY--YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 ++ +R L DV V L D + GA L+KP L A+ Sbjct: 767 TTLSRLRATGLPDDVPVLLAALSCHEDPQGR-EIRDIGAAGQLIKPVTTFGLLDAI 821 >gi|225375673|ref|ZP_03752894.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM 16841] gi|257437566|ref|ZP_05613321.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii A2-165] gi|225212443|gb|EEG94797.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM 16841] gi|257199873|gb|EEU98157.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii A2-165] gi|295109640|emb|CBL23593.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 221 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+++ + + + + + VF + A E KEL P+ +++D + Sbjct: 1 MNKVLIIEDDKEICFMIKDHLEKYNYQVFFTFTGANALERV-KELTPDLIILDLMLPFIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM-REL 117 E I +R+ ++V V + + + R GA+ +L KPF+ + L + R L Sbjct: 60 GDELIRTIRK---FSNVPVIVVSAKSLTFNKVELFRLGADDYLTKPFDLDELLARIERNL 116 Query: 118 PQMQK 122 + QK Sbjct: 117 LRSQK 121 >gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4] gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4] Length = 224 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G++V +A E + + +++D + + Sbjct: 2 RILVVEDDVNLNRQLVEALQEAGYVVDQAMDGEEG-HYLGDTEPYDAVILDIGLPTMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + ++G AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRSAGRAMPVLILTARDRWSDKVSGIDAGADDYVTKPFHVEEVLARIRALIRR 118 >gi|77458928|ref|YP_348434.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382931|gb|ABA74444.1| putative two-component response regulator Winged helix family [Pseudomonas fluorescens Pf0-1] Length = 241 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+VD + + + F G+ V A EA + P+ +++D + G L Sbjct: 8 RLLIVDDDGEILSLLKKFFVQHGYQVDVAAHG-EAMWAAIAQARPDTIILDLMLPGEGGL 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 VR + + L + I G GA+ +L KPF + L +R L + Sbjct: 67 SLCQKVRAQMG---IPIIMLTAMAELSDRIVGLELGADDYLTKPFAPQELLARVRALQRR 123 >gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CDC1551] gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis C] gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CDC1551] gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis C] Length = 276 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD + + + + G+ V A EA +K + P+ LV+D + V Sbjct: 52 RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDK-VGPDVLVLDIMLPDVDGL 110 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R +L + G +GA+ ++ KPF+ E L +R L + Sbjct: 111 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 170 Query: 123 SKDE 126 + Sbjct: 171 HLER 174 >gi|117918934|ref|YP_868126.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. ANA-3] gi|117611266|gb|ABK46720.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. ANA-3] Length = 350 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LL+VD + ++ + +D + + ATS +A + LP +++D M + F Sbjct: 10 LLVVDDTPDNIQIIHGILSDQ-YTIRAATSGEKALKLASTHPLPELILLDVMMPEMDGFE 68 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++ P+ + + V ++ + D G GA ++ KP + L+ + + Sbjct: 69 TCRRLKRDPITSKIPVIFVTAKTDTIDEQTGFELGAVDYISKPISPAVLKVRTQTHLALS 128 Query: 122 KSKDENQFL 130 + + L Sbjct: 129 NQARQLEAL 137 >gi|330829011|ref|YP_004391963.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328804147|gb|AEB49346.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 242 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+ + + + G A EA + P+ L++D M + Sbjct: 16 VLIAEDEAEIADILAAYLQRHGLRSLHAADGREALAM-HQAFKPDLLLLDVQMPQLDGWQ 74 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ +R D V L + G R GA+ +++KPFN + ++ + + Sbjct: 75 VLSEIRARG---DTPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRT 131 Query: 122 KS 123 ++ Sbjct: 132 QA 133 >gi|329960508|ref|ZP_08298896.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328532738|gb|EGF59525.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 375 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + + L + F + A++ +A E +KE P+ +++D M Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFTIATASNGRQALEQVDKEN-PDLILLDVMMPDLSGF 69 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P ++ + +L ++ G + GAN F+ KPFN+E L + + Sbjct: 70 EVAQQLKANPATAEIPIIFLTALNSTADIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129 Query: 121 QKSKD 125 +K Sbjct: 130 VAAKR 134 >gi|299144115|ref|ZP_07037195.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518600|gb|EFI42339.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 234 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 5/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + +R + + V A +A E + +++D M V Sbjct: 5 KILVAEDDKAIRDSIGIYLKNSNYDVIYAFDGKDALEKFRSNE-IHLVIMDLMMPNVTGE 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-- 120 A ++ + V + L + + + G GA+ ++ KPFN L + + Sbjct: 64 EAILKIREK-SYVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELMARVNSNIRRLY 122 Query: 121 -QKSKDENQF 129 +SK+EN+ Sbjct: 123 KYQSKEENER 132 >gi|290352249|dbj|BAI78835.1| putative two-component response regulator [Streptococcus pyogenes] Length = 146 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 251 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 5/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + GF V A + E ++ D + G+ Sbjct: 30 RILLVEDDEKIASFIIGGLRQSGFAVDHAADGLDGLHLATTEPYAVAVI-DVMLPGMDGL 88 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R+ + + + L + E + G G++ ++ KPF+ L ++ L + Sbjct: 89 KVIEELRRRKV--NTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRR 146 Query: 121 QKSKDENQFLD 131 S E L Sbjct: 147 STSASEPTRLS 157 >gi|281425218|ref|ZP_06256131.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella oris F0302] gi|281400684|gb|EFB31515.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella oris F0302] Length = 1295 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 S+L+VD + + VF A EA ++ P+ +V D M + Sbjct: 1032 SVLVVDDNTDFLGFLHTSLQTYFRRVFRARDGKEALCLLRQQ-QPDLVVSDVMMPVMDGY 1090 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ + + V L + D E G + GA++++ KPF+ E L + + Sbjct: 1091 QLCQTIKEDIEISHIPVVLLTAKSDAESQTIGYKLGADAYIAKPFDIELLLSVIEMQLRR 1150 Query: 121 QKSKDE 126 ++ + Sbjct: 1151 RELFRQ 1156 >gi|260222414|emb|CBA31954.1| Chemotaxis protein cheY [Curvibacter putative symbiont of Hydra magnipapillata] Length = 134 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L VD S +RK+ G+ V EA +A E + + + ++ D++M Sbjct: 15 MPLILAVDDSPSMRKMVSFTLTGAGYQVVEAVDGQDAYEKAQTQT-FDLVLTDQNMPRLD 73 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L +R+ P + L E AG AGA +L+KPF+ L ++++ Sbjct: 74 GLGLTRKLREHPQFKTTPILMLTTESSDLMKQAGRAAGATGWLVKPFDPAKLLDVIKKVI 133 Query: 119 Q 119 + Sbjct: 134 R 134 >gi|258516238|ref|YP_003192460.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779943|gb|ACV63837.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 232 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +++ D +R++ + G+ V +A + + + ++ + L++D M Sbjct: 5 KIMVADDEERIRRLVKMYLEKEGYEVGQAINGEDVLKQLGQDASWDLLLLDLMMPETDGW 64 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ +D+ + L D + G GA+ ++LKPF+ L ++ L + Sbjct: 65 QVCRELRKK---SDIPIIMLTARGDEIDRVLGLELGADDYVLKPFSPRELVARIKALLRR 121 Query: 121 QKSKD 125 + K Sbjct: 122 VRRKQ 126 >gi|256004559|ref|ZP_05429537.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417251|ref|ZP_06248271.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255991431|gb|EEU01535.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281408653|gb|EFB38911.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316940723|gb|ADU74757.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 223 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + D GF V A EA +K + L++D S++ Sbjct: 1 MPKILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKY-DLLLVDISLKDGN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + R+ D+ V +L D ++ G GA+ +++KPF L +R+ Sbjct: 60 GFAVCSAAREN---NDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKAL 116 Query: 119 QM 120 + Sbjct: 117 RR 118 >gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] Length = 223 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+++ H +RK+ + F GF VFE + E K + +++D + + Sbjct: 2 NILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVF-KNNNIDIVILDIMIPYLDGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V + L + + E + G GA+ ++ KPF+ + L ++ L + Sbjct: 61 KVCKSIR---DLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKR 117 >gi|229828736|ref|ZP_04454805.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM 14600] gi|229793330|gb|EEP29444.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM 14600] Length = 230 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 7/129 (5%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL+D + + ++ G V A E +E P+ +++D M + Sbjct: 1 MSKILLIDDEVELLMLLKNELEARGHRVLTAYRGEEGIALARQE--PDLILLDIMMPDMN 58 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R L + +L + I G + F+ KPF L + Sbjct: 59 GFEVCRAIRDQIL---CPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANL 115 Query: 119 QMQKSKDEN 127 + ++ EN Sbjct: 116 RREQRSQEN 124 >gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 ++L++D + ++ + G+ +++A EA + +++D M Sbjct: 4 RNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHML-SLYQIDLMILDIMMPKRNG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE VR+ V + L + + I G GA+ +++KPFN L ++ L + Sbjct: 63 LEVCQQVREE---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLR 119 Query: 120 MQKSKD 125 + Sbjct: 120 RSSFQQ 125 >gi|255530119|ref|YP_003090491.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255343103|gb|ACU02429.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ + + + G F V E + K+ + ++D M Sbjct: 1 MKRILLVEDDPNLGLLLQDYLQLKGKFDVVLCADGEEGLKAFSKQE-FDLCILDVMMPKK 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F + +V + + + E + G + ++ KPF E L + L + Sbjct: 60 DGFTLGKEIRKINQEVPIIFATAKAMMEDKASAYDLGGDDYITKPFRIEELLLRINALLK 119 Query: 120 M 120 Sbjct: 120 R 120 >gi|198277154|ref|ZP_03209685.1| hypothetical protein BACPLE_03362 [Bacteroides plebeius DSM 17135] gi|198269652|gb|EDY93922.1| hypothetical protein BACPLE_03362 [Bacteroides plebeius DSM 17135] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 53/120 (44%), Gaps = 4/120 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+MV A S EA + + N +++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLEMEGYMVDTANSAEEALKL--ELPRYNLILLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ ++ + ++ + + G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASMMKKNKDTQNIPIIFITAKDTENDTLTGFNLGADDYISKPFSLREVIMRVKAVLRR 122 >gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 245 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 6/126 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + ++ + + + EA E E+E + + +D M V Sbjct: 19 RRILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETY-DLIFLDVMMPFVDG 77 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F +R +DV + + + ++ G R GA+ ++ KPF + + + Sbjct: 78 FDACERIRAK---SDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILR 134 Query: 120 MQKSKD 125 + Sbjct: 135 RVDMQK 140 >gi|218246085|ref|YP_002371456.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|257059134|ref|YP_003137022.1| response regulator receiver protein [Cyanothece sp. PCC 8802] gi|218166563|gb|ACK65300.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|256589300|gb|ACV00187.1| response regulator receiver protein [Cyanothece sp. PCC 8802] Length = 122 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D S R++ L D GF V A +A E +E L + +++D M + Sbjct: 1 MTTILVTDDSTAQRELIAGLLVDNGFSVITAIDGEQALEKV-QETLFDLIILDVVMPKLN 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++ P ++ V + + GAN +++KPF+ L +++L Sbjct: 60 GFQTCRKLKEDPKTQNIPVILCSTKNTDVDRYWAKKQGANEYIVKPFSPNELIEKVQQLL 119 >gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R + + G+ VF+A+ EA E E+E + N +V+D M + Sbjct: 3 NNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEV-NLMVLDIMMPDMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + L +V+ I G GA+ ++ KPFN L +R L + Sbjct: 62 LEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRR 119 >gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis] gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis] Length = 213 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + ++ G+MV A A ++ P+ +++D M G+ F Sbjct: 1 ILIVDDTPDNLALLSDALDEVGYMVLVALDGLSALNRIQR-RRPDLILLDAMMPGLDGFE 59 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ D+ V ++ D E ++ G AG ++ KP N E + + + Sbjct: 60 TCQRIKADAATADIPVLFMTALTDSEHVVKGFAAGGIDYVTKPINTEEVLARVASHLRTA 119 Query: 122 KSKDENQ 128 + + Sbjct: 120 RILQTAR 126 >gi|87310339|ref|ZP_01092469.1| phosphate regulon response regulator PhoB [Blastopirellula marina DSM 3645] gi|87286838|gb|EAQ78742.1| phosphate regulon response regulator PhoB [Blastopirellula marina DSM 3645] Length = 247 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + V + G+ V A + + + P+ +++D + Sbjct: 5 KVLIVEDDRSLADVLAYNVRQAGYEVISAYDGQDGLTQAQIKT-PDLVILDLMLPVVDGH 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R D+ + L + + + G GA+ ++ KPF+ + L ++ L + Sbjct: 64 EVCRRLRADASTKDIMILMLTAKSEESDQLIGFSLGADDYVTKPFSVKVLLERIKALVRR 123 Query: 121 QKSKD 125 ++ D Sbjct: 124 KRGAD 128 >gi|299139617|ref|ZP_07032791.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598545|gb|EFI54709.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ +R+ GF V EA++ +A + + + +++D +M G+ Sbjct: 6 KVLVVEDDAGIRQSLFETLGALGFAVGEASNGEDAMLRL-RMVNYDAVLLDINMPGMGGK 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + V L + + + ++ AGA ++ KPF L +R + + Sbjct: 65 ETCRRICQSYPHLPVVMLTVRDEEDDIVEALDAGAFDYVTKPFQIRELTARLRAVIRRSH 124 >gi|291548314|emb|CBL21422.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 222 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ +R + + A + A P+ +++D + Sbjct: 1 MNKTLILVVEDDRPIRNLIVTTLKTHDYKYLAAENGASAILEASSHN-PDIVLLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++++ +++ + + + I AGA+ ++ KPF+ E L +R Sbjct: 60 MEGV-EVIKKIRTWSNMPIIVISARSEDMDKIEALDAGADDYITKPFSVEELLARIRVSQ 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|257094697|ref|YP_003168338.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047221|gb|ACV36409.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 122 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+ D + L GF V A EA E P+ +++D M + Sbjct: 3 KKILIADDEQNIVISIEFLLRREGFEVLVAGDGEEALARVRAE-RPDLVLLDVMMPRMNG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R P + + L + ++ G GA+ ++ KPF+ + L +R+L Sbjct: 62 FDVCQALRADPDLSGTRILMLTAKGRDTEVSKGLGLGADGYMTKPFSTKELLAEVRKLL 120 >gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662] gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662] gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 233 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M ++L+VD + + + VF+ S A E C K+ + ++D + Sbjct: 1 MKQSNVLVVDDEKEIADFIELYLKNENYEVFKYYSGAGALE-CVKQEQIDLAILDVMLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + F ++++ + V L + I G GA+ ++ KPF L ++ Sbjct: 60 IDGF-EILKEIRKDHNFPVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQL 118 Query: 119 QM 120 + Sbjct: 119 RR 120 >gi|226947054|ref|YP_002802127.1| response regulator with metal dependent phosphohydrolase activity (two-component) [Azotobacter vinelandii DJ] gi|226721981|gb|ACO81152.1| response regulator with metal dependent phosphohydrolase activity (two-component) [Azotobacter vinelandii DJ] Length = 347 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 4/132 (3%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58 M ++L+VD + + A + A + P+ +++D M G Sbjct: 1 MKATILVVDDVPENIDIFVEILAPH-HRTKVALNGERALRIARSDNPPDLILLDVMMPGL 59 Query: 59 -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++ P + V ++ + G GA ++ KP + +R Sbjct: 60 SGYQVCERLKADPDTRAIPVIFVTAMSETADEQRGLELGAVDYITKPISPPIALARVRTH 119 Query: 118 PQMQKSKDENQF 129 + + + E Sbjct: 120 LALHRQRQELAR 131 >gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206] gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206] Length = 260 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ ++ G+++ + + K+ +++D + G+ Sbjct: 38 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L + + G +GAN +L+KPF+ L +R + Sbjct: 96 GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 Query: 121 QKSKD 125 + + Sbjct: 155 HHALN 159 >gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 225 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLV+ ++R+ + +G+ V A E + + P V+D + + Sbjct: 6 RLLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQAD-APQVAVLDVMLPNLDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R + V V L D ++ G AGA+ +++KPF+ L +R + + Sbjct: 65 ELCRRIR---GCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRR 121 Query: 121 QKSK 124 + + Sbjct: 122 LRRE 125 >gi|283851819|ref|ZP_06369096.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] gi|283572735|gb|EFC20718.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfovibrio sp. FW1012B] Length = 453 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L VD + +V G+ V A EA E K + ++ D M G+ Sbjct: 9 KTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVK-LVISDIRMPGMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G + + +L + + GA +L KPF+ + L + E+ Sbjct: 68 MRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVFARA 127 Query: 122 KSKDENQFLD 131 D + D Sbjct: 128 AGNDATRERD 137 >gi|228911099|ref|ZP_04074906.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228923993|ref|ZP_04087270.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835792|gb|EEM81156.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228848603|gb|EEM93450.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 219 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 7 VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIA 64 VD +R + R G+ V A EA E + P+ L++D + E + Sbjct: 2 VDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTDGYELLR 59 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 R+ D+ V L + + G + GA+ ++ KPFN L ++ + + K Sbjct: 60 LFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKT 117 Query: 125 D 125 + Sbjct: 118 E 118 >gi|256830591|ref|YP_003159319.1| response regulator receiver sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579767|gb|ACU90903.1| response regulator receiver sensor signal transduction histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 410 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L +D VR+ + DFG+ V +A + E P+ +++D M + Sbjct: 9 VLTIDDDQAVRESLANFLEDFGYEVLQAGDGQQGLEVFAAN-RPDLILVDLRMPRMDGLQ 67 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELPQMQK 122 R L + + D ++ R GA +L+KP + L ++ + + Sbjct: 68 VLARVQELSPQTPIMVISGAGDIRDVVEALRRGAWDYLVKPIQDMNILLHSVETCLERAR 127 Query: 123 SKDEN 127 + +N Sbjct: 128 LQRQN 132 >gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 222 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LL++ + + +V ++ G+ V A +E P+ +V+D + Sbjct: 3 QRILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSA-REHAPDLVVLDLGLPDFDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R++ + V + L ++ + AGA+ ++ KPF+ E L ++ + Q Sbjct: 62 AEVA-RRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQ 120 Query: 122 K 122 + Sbjct: 121 Q 121 >gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 237 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + + V+++ + A E+ E E L + ++D + + F Sbjct: 4 KVLVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKL-DLAILDVMLPDIDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V L + I G GA+ ++ KPF L ++ + Sbjct: 63 QICKKIREKYTY---PVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQLRR 119 Query: 121 QK 122 K Sbjct: 120 YK 121 >gi|224541825|ref|ZP_03682364.1| hypothetical protein CATMIT_00997 [Catenibacterium mitsuokai DSM 15897] gi|224525248|gb|EEF94353.1| hypothetical protein CATMIT_00997 [Catenibacterium mitsuokai DSM 15897] Length = 236 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M LL+V+ ++R + + F + V EA +A ++ + +++D M G+ Sbjct: 17 MYKLLVVEDEVLIRDIIKEYFAARDYEVIEAVDGYDALNKVNQD--IDMVLLDIMMPGMD 74 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + D+ + ++ + + M+ G GA+ ++ KPF L + + Sbjct: 75 GYETCKKIREKY-DMPIIFISALSETDNMLDGYHVGADDYITKPFKPSVLYAKCQAILNR 133 Query: 121 -QKSKDENQFL 130 +K+K E++ + Sbjct: 134 SKKTKKEDKEI 144 >gi|254425159|ref|ZP_05038877.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196192648|gb|EDX87612.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 380 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L VD + + D + + A E P+ +++D M G Sbjct: 7 RILAVDDVPDNLFILESILADINEYDITCVEDGKTAIEKVVASP-PDLILLDVMMPGIDG 65 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R+ + + + D + G +GA+ F+ KPF+ + L +R L + Sbjct: 66 YEVTRRIRENKSLPYIPILLVTAH-DHSSLAEGLDSGADDFIRKPFDIDELMARVRSLIR 124 Query: 120 MQKSKDEN 127 ++ S DE Sbjct: 125 LKHSLDEQ 132 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + R + GF+V A E + +E +++D + + + Sbjct: 2 KILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESY-ELVILDVMLPLLDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ D V +L + E + G GA+ +L+KPF+ L +R L + Sbjct: 61 -QLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRR 117 >gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 LLLVD +R + D GF V A + + +E+LP+ ++ D M Sbjct: 8 RLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGDDGWQKA-QEMLPDLVISDVMMPRCDGY 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110 + +R+ V +L + G AG + ++ KPF+ E L Sbjct: 67 GLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKPFDPEEL 116 >gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica CNB-440] gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family [Salinispora tropica CNB-440] Length = 240 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 6/117 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + KV G+ V A + +E P+ +V+D + G+ Sbjct: 14 RVLVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAA-REDEPDVVVLDLMLPGLDGV 72 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 +R +D +V L + + G GA+ +L KPF+ L + + Sbjct: 73 EVCRRLRA---FSDCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAAM 126 >gi|114320304|ref|YP_741987.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226698|gb|ABI56497.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 247 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 4/124 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD +R++ G A + + L++D + G L Sbjct: 4 NILIVDDDPGLRELLVDYLGQNGLEARAVPDG-TALWPALEAGPVDLLILDLMLPGDDGL 62 Query: 61 EFIAHVRQ-MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E +R + V L + I G GA+ +L KPFN L +R L + Sbjct: 63 ELCGQLRAADAPWRTLPVIMLTARGEETDRIVGLELGADDYLPKPFNPRELLARIRGLLR 122 Query: 120 MQKS 123 + Sbjct: 123 RSRM 126 >gi|329849017|ref|ZP_08264045.1| transcriptional regulatory protein ompR [Asticcacaulis biprosthecum C19] gi|328844080|gb|EGF93649.1| transcriptional regulatory protein ompR [Asticcacaulis biprosthecum C19] Length = 252 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL++D +R + + ++ V A + LV+D M G Sbjct: 8 RLLVLDDDAEMRALLQRYLSENHHQVRAVPD-ASALYRLLARESFDLLVLDLMMPGEDGL 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + G + + L D + G GA+ +L KPF L + + + Q Sbjct: 67 AVCRKLRGEGQMIPIIMLTARGDPVDRVLGLEMGADDYLAKPFLPRELLARIEAVRRRQ 125 >gi|307329899|ref|ZP_07609053.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306884510|gb|EFN15542.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 246 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 1/107 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ + G+ A +A + P +V+D M + Sbjct: 12 RILIVDDEPAVREALQRSLVFEGYATETAVDGLDALDKV-GSYDPELIVLDVLMPRMDGL 70 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109 A R G + + L + G AGA+ +L+KPF + Sbjct: 71 TAARRLRATGVTLPILMLTARDTVGDRVTGLDAGADDYLVKPFELDE 117 >gi|291460016|ref|ZP_06599406.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon 078 str. F0262] gi|291417357|gb|EFE91076.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon 078 str. F0262] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 2/124 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ ++ + + + + GF + E K + L++D + G+ Sbjct: 1 MK-ILVIEDEFLLSESVKSILTEHGFEADTVSDGAEGL-IYAKSGAYDLLILDVMLPGMN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + L + + G AGA+ +L KPF+ L + L + Sbjct: 59 GIALARQLRKERCGMPILMLTARSELLDRVEGLNAGADYYLTKPFDERELMACVNALLRR 118 Query: 121 QKSK 124 Q ++ Sbjct: 119 QGAE 122 >gi|262279620|ref|ZP_06057405.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus RUH2202] gi|262259971|gb|EEY78704.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus RUH2202] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ + E +++ + L++D + + Sbjct: 7 RILIIEDEIKIATYLVKGLKESGYQAECIHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + V +L + + G GA+ +L KPF+ L ++ L + Sbjct: 66 SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 122 Query: 121 QKSKDENQF 129 Q+ EN+ Sbjct: 123 QQYLQENEL 131 >gi|320008929|gb|ADW03779.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLL++ +R + G V A + + E +E P+ +V+D + G+ F Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLPGIDGFE 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + L D ++ G +GA+ +++KP L +R + + Sbjct: 66 VCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRG 122 Query: 122 KSKDEN 127 + + + Sbjct: 123 ERESTD 128 >gi|126662822|ref|ZP_01733821.1| two-component system response regulator [Flavobacteria bacterium BAL38] gi|126626201|gb|EAZ96890.1| two-component system response regulator [Flavobacteria bacterium BAL38] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L V+ + + F V + EA + KE + V+D + + Sbjct: 4 KRILYVEDDETLAFLTADNLEQH-FDVTHCNNGKEAFQLFCKET-FDLCVLDIMLPDMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F ++ + +L + E I G + GA+ +L+KP++ E L + Sbjct: 62 FEIATEIRKRNQEIPIIFLSAKTMKEDRIKGLKLGADDYLVKPYSIEELILKIEIFLNRS 121 Query: 122 KSKDENQ 128 + +N+ Sbjct: 122 QKSADNK 128 >gi|38505865|ref|NP_942483.1| two-component response regulator [Synechocystis sp. PCC 6803] gi|38423889|dbj|BAD02097.1| two-component response regulator [Synechocystis sp. PCC 6803] Length = 232 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLE 61 LLLV+ + V ++V A + ++ + + D + G+ Sbjct: 2 RLLLVEDEPDLGMVLEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + + + L + + G AGA+ +L+KPF L +R L + Sbjct: 62 LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRRS 121 Query: 122 KSKDENQF 129 Q Sbjct: 122 PELQPQQL 129 >gi|134299411|ref|YP_001112907.1| response regulator receiver modulated diguanylate cyclase [Desulfotomaculum reducens MI-1] gi|134052111|gb|ABO50082.1| response regulator receiver modulated diguanylate cyclase [Desulfotomaculum reducens MI-1] Length = 419 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 ++L+VD + + + GF V EATS EA +++ + + ++ID M Sbjct: 128 TVLVVDDDATLVQAVKERLTLDGFEVLEATSAREAVSILKRKQVIDLMIIDIVMPEGNGF 187 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E A +R+ + D + ++ E +K + G + GA+ +++KP + + + ++ + Sbjct: 188 ELCAKIRKEKVYEDTPIIFMTAETSLDKKLEGFKIGADDYVVKPISLDEIAAKVQAIVNR 247 Query: 121 QKSKD 125 + Sbjct: 248 TRRYK 252 >gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 1155 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD G +V + EA E E+ + +++D M + Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ P + + + + + +AGAN +L KP + + L +R Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1149 Score = 86.8 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+++ ++ L ++ G+ A E E + +P+ +++D + L Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELA-AQYIPDAILLDMRLPDHSGLT 823 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117 + +++ + V+ + E + GA + +KP +RE L+ L Sbjct: 824 VLQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876 Score = 62.1 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 18/138 (13%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + R+ L D + +A + + + ++ID + +L Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIY-DCMIIDLKLPDMLG 943 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARA----GANSFLLKPFNRETLR 111 + + + V + ++ +R+ GA + E L Sbjct: 944 NELLKRMTAEDIRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGAR-------SPERLL 996 Query: 112 FAMRELPQMQKSKDENQF 129 + +S+ N+ Sbjct: 997 DEVTLFLHKVESQLSNER 1014 >gi|332712423|ref|ZP_08432350.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332348897|gb|EGJ28510.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 518 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+ D R + R + + G+ V + + EL P+ +++D M + F Sbjct: 11 ILVADDDKQTRIMLRTIMENEGYNVEDVGDGQQCL-AAYTELKPDIVLLDAMMPVMDGFM 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A ++++ V + D + + GA ++ KP LR +R L + Sbjct: 70 CCAQIQKLLKNESTPVLMITGLNDQASVDWAFQVGATDYITKPIQPSVLRKRVRRLIEAN 129 Query: 122 KSKDENQFLD 131 +++ + + Sbjct: 130 RAEKTLRERE 139 >gi|330808379|ref|YP_004352841.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376487|gb|AEA67837.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 773 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 3/114 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ + + + V + + G V A EA + E + + + +++D +M + + Sbjct: 651 RVLLVEDNPVNQLVAKGMLVKLGCEVTVAAHGGEALDQLE-QRVFDLVLMDCNMPVMDGY 709 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 +RQ +D+ + L E+ AG N +L KPF RE L + Sbjct: 710 EASRQIRQSGRWSDLPIVALTANAMPEERERCRAAGMNDYLSKPFRREELAAVL 763 >gi|251790356|ref|YP_003005077.1| winged helix family two component transcriptional regulator [Dickeya zeae Ech1591] gi|247538977|gb|ACT07598.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 245 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+ + + ++ R G A +A E + P+ +++D M V Sbjct: 18 VLIAEDEPEIAEILRAYLTRNGLRTLHAADGRQALE-LHLSMKPDLVLLDVQMPLVDGWQ 76 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ +R D V L + G R GA+ +++KPFN + ++ + + Sbjct: 77 VLSGIRLRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVQAVLRRA 133 Query: 122 KSKDENQ 128 + E Q Sbjct: 134 GLRAERQ 140 >gi|237756293|ref|ZP_04584848.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense SS-5] gi|237691541|gb|EEP60594.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense SS-5] Length = 220 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + ++ + + GF+V ++ A E+ E +V+D + G Sbjct: 2 RLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENY-EVIVLDLMLPGKDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G V L + E I G AGA+ +L KPF+ + L ++ L + Sbjct: 61 SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120 Query: 123 S 123 + Sbjct: 121 N 121 >gi|256833090|ref|YP_003161817.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686621|gb|ACV09514.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL + + + G+ V + A + + +V+D + + Sbjct: 1 MTHVLLAEDDPAISEPLARALGREGYNVVVQGTGQGAIDHAGAA---DLVVLDLGLPDMD 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 G V L D ++ G AGA+ ++ KPF L +R L + Sbjct: 58 GLEVARAIRQKGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRR 117 >gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L++D + + L ++ G+ V+EA S E+ E E + ++D + + Sbjct: 1 MAKILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIE-NNKIDLAILDVMLPDIS 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F + +R+ V L I G GA+ +++KPFN + ++ Sbjct: 60 GFDVLQSIREKQFF---PVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQL 116 Query: 119 QMQK 122 + + Sbjct: 117 RRYQ 120 >gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440] gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440] Length = 220 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLLV+ + + G+ + + E + +++D + + Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHET-FDLVILDLGLPRMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G + V L + IAG AGA+ +L+KPF+ L+ +R L + Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR 118 >gi|304408861|ref|ZP_07390482.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307302864|ref|ZP_07582619.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|304352682|gb|EFM17079.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306913224|gb|EFN43646.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 4/120 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLVD + G V A + + C + P+ +V+D M + Sbjct: 1 MSKILLVDDDPLFSMWLADALGTQGHEVACAENGVDGL-ACIESFAPDIIVLDLVMPQMN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ V + + + I G GA+ FL KPF+ + L +R L + Sbjct: 60 GF-ELLKARE--CSTPVLMISARDNEDDRITGYELGADDFLSKPFSIKELFVRLRALERR 116 >gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ + + +V + G+ V + + +A +E P+ +++D + Sbjct: 1 MANILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMF-RETQPDLVLLDIMLPEKN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++++ + V L + + G GA+ ++ KPF + + +R + + Sbjct: 60 GWT-ILKEIRERSTCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRR 118 >gi|298491500|ref|YP_003721677.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233418|gb|ADI64554.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 240 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 4/130 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR + + + V A A E + P+ +++D ++ + F Sbjct: 7 KILVVDDDPAVRNLIQRFLIRQNYQVEAAEDGKAALALFE-QFNPDLVILDVNLPDAIGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + M VFV L D I G GA+ +L KPF L + + + Q+ Sbjct: 66 -NLCQDMQSRNGVFVLMLTSRTDESDKIRGFSKGADDYLTKPFGLGELEVRVAAILRRQR 124 Query: 123 --SKDENQFL 130 + E + L Sbjct: 125 VVTTAEQKRL 134 >gi|304316235|ref|YP_003851380.1| Fis family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777737|gb|ADL68296.1| two component, sigma54 specific, transcriptional regulator, Fis family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 453 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+ D +R + + G+++ EA + A E + + +++D M Sbjct: 1 MRHILVADDEKNMRWALKKALFNDGYVIDEAENGAVALNKFESSIY-DLIILDIKMPEVN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +R D+ V + + + I + GA ++ KPF+ L+ + + Sbjct: 60 GIDVLKTIR--EKDKDIPVIVITAYGEIDTAIQAIKLGAVDYIQKPFDINELKLTIGKAL 117 Query: 119 QMQKSKDENQFLDA 132 ++ K+E +FL Sbjct: 118 EITNLKEEVKFLRE 131 >gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293] gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293] Length = 242 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 14 NSILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 72 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ L ++ + Sbjct: 73 IELCRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLR 129 Query: 120 MQKSKDEN 127 ++N Sbjct: 130 RYTYFNQN 137 >gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESME--G 58 +++LLV+ + + + AT +A + E N +++D + Sbjct: 14 NTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPKLD 73 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + +RQ D+ + + +AG AGA+ ++ KPF E L +R + Sbjct: 74 GLEVLRRIRQND---DIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVML 130 Query: 119 QMQKSKD 125 + +++ Sbjct: 131 RHSQNQA 137 >gi|153004709|ref|YP_001379034.1| two component sigma54 specific Fis family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028282|gb|ABS26050.1| two component, sigma54 specific, transcriptional regulator, Fis family [Anaeromyxobacter sp. Fw109-5] Length = 459 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++R G+ V A S +A E P+ +++D + G+ Sbjct: 7 RVLVVDDEKLIRWSVAERLQRSGYEVISAESGEQALELIAANP-PDVMLLDVKLPGIDGV 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + D+ V + + + + GA FL+KPF + L A+ + Sbjct: 66 QTLQRALAENADLIVLMMSAHSTVDVAVEAMKHGAVDFLVKPFPFQALDAAVERAIATAR 125 Query: 123 SKDENQFLDA 132 ++ + L + Sbjct: 126 TRRQITALAS 135 >gi|160880001|ref|YP_001558969.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428667|gb|ABX42230.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 225 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ ++ + + G+ VF A + A E +K+ + +V+D M + Sbjct: 1 MFQILVVEDDKNTARLMKAVLMHAGYEVFCADNGVSALELMDKQH-IDLIVLDVMMPEMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + + + E G AG + +++KP N + + ++ L Sbjct: 60 GYEFTKQLR--GSNDNTPILMVTAKQLPEDKCKGFLAGTDDYMVKPVNEDEMLLRIKALL 117 Query: 119 QMQKSKDENQF 129 + K +E++ Sbjct: 118 RRAKIVNEHKL 128 >gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp. HTCC2649] gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp. HTCC2649] Length = 244 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ G+ V A + +A + +E P+ +V+D + Sbjct: 20 RVLVVDDESNLTELLSMALRYEGWEVRAAATGLKAVKAA-REFQPDAVVLDMMLPDFDGM 78 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V V +L + E +AG AG + ++ KPF+ E + +R L + Sbjct: 79 EVLRRMRADNDAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRR 136 >gi|107028368|ref|YP_625463.1| two component AraC family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105897532|gb|ABF80490.1| two component transcriptional regulator, AraC family [Burkholderia cenocepacia AU 1054] Length = 277 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD ++ + + A +A + + P+ +++D M + F Sbjct: 22 ILIVDDRPNDLRLLTEILRTARCRISVAFDGLQAYHRAQA-IAPDLILMDVRMPRMDGFA 80 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + P + V L D E IAG GA +++KPF + +R + Sbjct: 81 ASRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGAIDYIVKPFEPAEVIARIRNHLKRT 140 Query: 122 KSKD 125 + Sbjct: 141 RRSQ 144 >gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S] gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+V+ + L GF A E+ + +++D + G+ Sbjct: 2 LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGA-DIVLLDVMLPGMSGTDV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V V + + G GA+ ++ KP++ L +R + + Sbjct: 61 CKQLRAKSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 115 >gi|171058147|ref|YP_001790496.1| response regulator receiver modulated metal dependent phosphohydrolase [Leptothrix cholodnii SP-6] gi|170775592|gb|ACB33731.1| response regulator receiver modulated metal dependent phosphohydrolase [Leptothrix cholodnii SP-6] Length = 364 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 7/136 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD V L + V ATS P+ +++D M G+ Sbjct: 8 TVLIVDDDVDNLFVLTELLRPH-YRVLAATSGPACLRMANGAPRPDLILLDVMMPGLDGY 66 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R+ P DV V +L D G R GAN ++ KP + +R + Sbjct: 67 AVLARLRENPCTHDVPVVFLTALSDPSDEDRGLRLGANDYITKPLKPAIVLARVRTQLEA 126 Query: 121 QKSK----DENQFLDA 132 ++++ D N L+A Sbjct: 127 KQARDWMTDRNAALEA 142 >gi|168212632|ref|ZP_02638257.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170715801|gb|EDT27983.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 234 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G+ VF+ ++ E E EKE + V+D M + Sbjct: 5 NILVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D + L + + I G GA+ ++ KPFN L + + Sbjct: 64 TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120 >gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 232 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 4 NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 63 IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 119 Query: 120 MQKSKDEN 127 ++N Sbjct: 120 RYTYFNQN 127 >gi|159897999|ref|YP_001544246.1| response regulator receiver modulated metal dependent phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779] gi|159891038|gb|ABX04118.1| response regulator receiver modulated metal dependent phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779] Length = 345 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 6/136 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D + R + G+ + A + ELLP+ +++D M + F Sbjct: 6 TILIIDDLAVARASMNAVLQGEGYHLVFAENGLSGIAQAL-ELLPDTILLDVMMPDMDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R PL ++ V + D E + G RAGA+ FL KP + L+ ++ + ++ Sbjct: 65 EVCRQIRANPLLAEIPVVMVTALDDRESRLQGLRAGADDFLSKPIDSLELKTRLQTITRL 124 Query: 121 ---QKSKDENQFLDAI 133 ++ +DE + ++ + Sbjct: 125 NRYRRLQDERRQVERL 140 >gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1932 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + V A + E E + +++D M + Sbjct: 1812 KKVLIVDDDVRNIFALTSMLERYQMQVIYAENGREGISLLENTSDIDVVLMDVMMPEMDG 1871 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ + + L + AGA+ ++ KP + E L +R Sbjct: 1872 YETMQLIRKKEQFKALPIIALTAKAMQGDRDQCIAAGASDYIAKPVDTEQLLSLLRVWLY 1931 Query: 120 M 120 Sbjct: 1932 R 1932 Score = 99.5 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 9/123 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ ++ + GF V A S + K+ P +++D + + Sbjct: 1546 LLIIEDDVNFARILVDMARQHGFQVLTAQSGTAGLKLA-KDFQPMAILLDIRLPEMDGWT 1604 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 + ++ P + V+ + + E G + GA ++L KP E + +R Sbjct: 1605 VLDRLKHDPTTRHIPVHIMTV---EEGRQRGLQLGAIAYLQKPVTSEAISEALDKIRGFV 1661 Query: 119 QMQ 121 + + Sbjct: 1662 ERR 1664 Score = 70.6 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +LL+V+ + R+ L + + A E + + LV+D + + Sbjct: 1666 KNLLVVEDDELQRQSIVELIGNSDVATVAVGTGAAALEAIRTQ-QFDCLVLDLGLPDMTG 1724 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + +++ G + + + R A + ++K + E L Sbjct: 1725 FELMEQIKREANGATLPIIVYTGREISKNQETELRRIAETIIVKDVRSPERLLD 1778 >gi|319954447|ref|YP_004165714.1| transcriptional regulator, crp/fnr family [Cellulophaga algicola DSM 14237] gi|319423107|gb|ADV50216.1| transcriptional regulator, Crp/Fnr family [Cellulophaga algicola DSM 14237] Length = 355 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + VR++ + + V A E K P+ ++ D M + Sbjct: 1 MKKILLIEDNLDVREMTAEILELENYEVATAEKGKIGIEKA-KSFAPDLILCDIMMPIMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + + + +L + + + G GA+ +L KPF + L A+ Sbjct: 60 GYEVFEQLSKDHSTASTPFIFLTAKSERSDLRKGMTMGADDYLTKPFEAQDLIEAIEA 117 >gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 242 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+VD +R+ GF V A A + + +V+D SM G+ Sbjct: 9 RLLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGV-DAVVLDVSMPGISGV 67 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G DV V L D IAG AGA+ +++KPF+ L +R L + + Sbjct: 68 DVVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGR 127 >gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1977 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 3/117 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +LL + + G+ V A + EA + + P+ +++D M GV Sbjct: 1859 ILLAEDNEANISTISSYLKAKGYRVLVAKNGQEAID-LGQAAQPDLILMDIQMPGVDGLS 1917 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 I +RQ P + + L AGAN +L KP L +++L Sbjct: 1918 AIQQLRQAPSSAHLPIIALTALAMNGDRDRCLAAGANEYLSKPVKLSQLVILIQQLL 1974 >gi|220911753|ref|YP_002487062.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858631|gb|ACL38973.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 254 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64 L+++ H +R++ R + GF V A+S E K + P+ + +D + + F Sbjct: 8 LVIEDDHDIRELVRTVLTQAGFDVTVASSGAEGV-LVAKTISPDVITLDLGLPDIDGFEV 66 Query: 65 HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 RQ+ +D ++ L + + G +GA+ +L KPF LR + + + +S Sbjct: 67 S-RQIREFSDAYIVMLTARTEELDTLIGLESGADDYLTKPFRPRELRARVAAMMRRPRSA 125 Query: 125 DE 126 E Sbjct: 126 AE 127 >gi|110633701|ref|YP_673909.1| response regulator PleD [Mesorhizobium sp. BNC1] gi|110284685|gb|ABG62744.1| response regulator receiver modulated diguanylate cyclase [Chelativorans sp. BNC1] Length = 457 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 3/132 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD ++ + V A S +A + CE + +++D M G+ F Sbjct: 4 RILVVDDVPANLRLLEARLLAEYYDVVTARSGPDAIDICESSK-IDVVLLDVMMPGMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ PL T + V + + G AGA+ FL KP N L ++ L ++ Sbjct: 63 EVCRRLKADPLTTHIPVIMITALDQPSDRVRGLEAGADDFLTKPVNDLQLLTRVKSLTRL 122 Query: 121 QKSKDENQFLDA 132 + DE + A Sbjct: 123 KALTDELRLRAA 134 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61 S+LL+D + + D F + E E+ + L Sbjct: 157 SVLLIDEDKAAGRQLARMLQDH-FALDAVDDPQEGLVRAAERSYECIIVSSSFVAYDPLR 215 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +R M V + E D +I G N ++L+P R+ L +R + + Sbjct: 216 LCSQLRAMDRTRLVPIILFAGEGDETVIIRGLELAVNDYVLRPVERQELIARLRTQIRRK 275 Query: 122 KSKDENQ 128 + D + Sbjct: 276 RYNDSLR 282 >gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 266 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L V+ ++R+ + GF V + E P+ ++D + G+ Sbjct: 38 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAG-APDIALLDVMVPGMDGV 96 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 97 SLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153 >gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771] Length = 223 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G++V +A E F + +++D + + Sbjct: 2 RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 123 SKDENQFL 130 ++ + Sbjct: 121 GHASSEII 128 >gi|217076252|ref|YP_002333968.1| phosphate regulon transcriptional regulatory protein PhoB [Thermosipho africanus TCF52B] gi|217036105|gb|ACJ74627.1| phosphate regulon transcriptional regulatory protein PhoB [Thermosipho africanus TCF52B] Length = 222 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ +R + + G+ V EA S+ + R+ + +++D + Sbjct: 1 MKRILIVEDDLSIRNILKKYLKSHGYEVDEAGSIVDFRKKLY-NDKFDLVLLDIMLPDGF 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 D+ V + I G GA+ ++ KPFN + ++ + Sbjct: 60 SINELPDIKVNFPDLGVIIISARDSDNDKIYGLEIGADDYVAKPFNPREVVARIKSYFRR 119 Query: 121 QKSKDE 126 +E Sbjct: 120 VSKNNE 125 >gi|42526008|ref|NP_971106.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] gi|41816058|gb|AAS10987.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] Length = 369 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 24/140 (17%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+V+ + R G+ V A A E E + P+ L++D + Sbjct: 1 MNKVLIVEDDEGIADFLRFELEHEGYSVLHAGDGRTALELFESDT-PDILLLDIMLPQLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF------------- 105 LE + +R+ + V V L + ++G +GA+ +L KPF Sbjct: 60 GLEVLRRIRK---TSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIGASNLDERLPV 116 Query: 106 -----NRETLRFAMRELPQM 120 + + L L Sbjct: 117 TDKGDDFDELAKTFNNLLSR 136 >gi|116686364|ref|YP_839611.1| two component AraC family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734973|ref|YP_001774087.1| two component AraC family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|116652079|gb|ABK12718.1| two component transcriptional regulator, AraC family [Burkholderia cenocepacia HI2424] gi|169821011|gb|ACA95592.1| two component transcriptional regulator, AraC family [Burkholderia cenocepacia MC0-3] Length = 277 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD ++ + + A +A + + P+ +++D M + F Sbjct: 22 ILIVDDRPNDLRLLTEILRTARCRISVAFDGLQAYHRAQA-IAPDLILMDVRMPRMDGFA 80 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + P + V L D E IAG GA +++KPF + +R + Sbjct: 81 ASRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGAIDYIVKPFEPAEVIARIRNHLKRT 140 Query: 122 KSKD 125 + Sbjct: 141 RRSQ 144 >gi|22537931|ref|NP_688782.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25011874|ref|NP_736269.1| hypothetical protein gbs1835 [Streptococcus agalactiae NEM316] gi|76798833|ref|ZP_00781044.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae 18RS21] gi|77409021|ref|ZP_00785740.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|61222656|sp|P0A4H9|DLTR_STRA3 RecName: Full=Transcriptional regulatory protein dltR gi|61222657|sp|P0A4I0|DLTR_STRA5 RecName: Full=Transcriptional regulatory protein dltR gi|22534830|gb|AAN00655.1|AE014273_2 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|18076414|emb|CAC83083.1| putative response regulator, DltR [Streptococcus agalactiae] gi|24413415|emb|CAD47494.1| Unknown [Streptococcus agalactiae NEM316] gi|76585807|gb|EAO62354.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae 18RS21] gi|77172362|gb|EAO75512.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 224 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + + L D G+ V A + E+ L + +++D + Sbjct: 2 RLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLY-DLVLLDIMLPKRSGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + + +L + + G GA+ ++ KPF + L +R + Sbjct: 61 SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120 Query: 123 SKDENQF 129 NQ Sbjct: 121 LIRANQL 127 >gi|331087248|ref|ZP_08336318.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408934|gb|EGG88395.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + G+ V +A EA + + + + L+ID M + Sbjct: 1 MFNVLVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEV-DLLIIDVMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ +L KPFN L ++ + Sbjct: 60 GIRATLKIREKNS-LPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRR 118 >gi|326332294|ref|ZP_08198574.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium Broad-1] gi|325950000|gb|EGD42060.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium Broad-1] Length = 1786 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD G V A S E ++E + +++D M G+ Sbjct: 1667 RRILIVDDDVRNVFALTSALEQHGIDVLYAESGEAGIEALQREPGVDLVLMDIMMPGMDG 1726 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R +P + + L + AGA+ ++ KP + L R Sbjct: 1727 LTAMRLIRDIPQFKSLPMIALTAKAMTGDREDSLAAGASEYITKPVDVADLLSLFRVWL 1785 Score = 37.9 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%) Query: 27 MVFEA--TSVCEAREFCEKELLPNYLVIDESM-EGVLEFIAHVRQMPLGTDVFVYY 79 V +S EA + + + +V+D + EG + + +R D+ V Sbjct: 1548 EVETVFGSSPEEA-QAVLADREVDCVVLDLPLAEGGFDVLRWMRTHKRSKDIPVVL 1602 >gi|325912950|ref|ZP_08175324.1| putative sensory transduction protein RegX3 [Lactobacillus iners UPII 60-B] gi|325477764|gb|EGC80902.1| putative sensory transduction protein RegX3 [Lactobacillus iners UPII 60-B] Length = 245 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + + A EA + +++D M + Sbjct: 19 KVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMDPSITCIILDIMMPEMSGL 78 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++++ ++V + + I G GA+ ++ KPFN + +R L + + Sbjct: 79 -DLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRRSE 137 >gi|283834020|ref|ZP_06353761.1| KDP operon transcriptional regulatory protein KdpE [Citrobacter youngae ATCC 29220] gi|291070158|gb|EFE08267.1| KDP operon transcriptional regulatory protein KdpE [Citrobacter youngae ATCC 29220] Length = 225 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEADGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + + V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 S Sbjct: 119 HAS 121 >gi|242280723|ref|YP_002992852.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio salexigens DSM 2638] gi|242123617|gb|ACS81313.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio salexigens DSM 2638] Length = 335 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 5/136 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L VD +V R + + + + A + A + K +P+ +++D M Sbjct: 2 MKKILCVDDEPNNLQVLRQILKEH-YQLIFAPNGTRALDAAAKH-MPDMVLLDIMMPDIS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E ++ P D+ + ++ + + G GA ++ KP + + ++ Sbjct: 60 GYEVCEKLKADPRTKDITIIFVTAMSEVKDEAYGFDVGAVDYIQKPVSGAVVLRRVQTHL 119 Query: 119 QMQKSKD-ENQFLDAI 133 + + ++ E DAI Sbjct: 120 NLVRVQELEKSQRDAI 135 >gi|115374136|ref|ZP_01461423.1| sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1] gi|310820905|ref|YP_003953263.1| Sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1] gi|115368803|gb|EAU67751.1| sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1] gi|309393977|gb|ADO71436.1| Sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1] Length = 547 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%) Query: 1 MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 MD + L+VD VR L G+ V A++ +A E E + +++D M Sbjct: 1 MDRIAVLVVDDEESVRTFLGELLGGAGYQVRCASNGAQALEMLE-GGSFDAVLLDVVMPE 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + R G + V L + + + GA+ +L KPF + L + Sbjct: 60 MSGLEVLRRYRSSGGNAPVIVLSALAGADDAVRAMKMGASDYLAKPFGNDELEDVLARAL 119 Query: 119 QMQKSKDE 126 + + Sbjct: 120 GTRAPARQ 127 >gi|94264871|ref|ZP_01288646.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454692|gb|EAT04957.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 362 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 57/134 (42%), Gaps = 6/134 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL- 60 S+L+VD + + + + + + V AT+ A + P+ +++D M + Sbjct: 6 KSVLVVDDTQTNIDILKGILSQ-DYTVKVATNGRLALKVAMSAKPPDLILLDVMMPDMDD 64 Query: 61 -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ ++ V ++ + + E G GA ++ KP + ++ ++ + Sbjct: 65 YEVCRLLKADEKTFNIPVIFVTAKSEIEDEALGFTLGAADYITKPVSAPIVQARVKTHLE 124 Query: 120 MQKSKDENQFLDAI 133 M D + L+++ Sbjct: 125 MY---DRRRLLESM 135 >gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 1155 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLVD G +V + EA E E+ + +++D M + Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +RQ P + + + + + +AGAN +L KP + + L +R Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1149 Score = 86.8 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+++ ++ L ++ G+ A E E + +P+ +++D + L Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELA-AQYIPDAILLDMRLPDHSGLT 823 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117 + +++ + V+ + E + GA + +KP +RE L+ L Sbjct: 824 VLQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 18/138 (13%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + R+ L D + +A + + + ++ID + +L Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIY-DCMIIDLKLPDMLG 943 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARA----GANSFLLKPFNRETLR 111 + + + V + ++ +R+ GA + E L Sbjct: 944 NELLKRMTAEDIRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGAR-------SPERLL 996 Query: 112 FAMRELPQMQKSKDENQF 129 + +S+ N+ Sbjct: 997 DEVTLFLHKVESQLSNER 1014 >gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] Length = 250 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 L+VD + +V F V A + +A ++L P+ +++D + L Sbjct: 18 RALVVDDELPLAEVVASYLEREQFEVVVAANGVDAI-AVARDLDPDVVILDIGLPSIDGL 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R +D ++ L + G GA+ ++ KPF+ L +R + + Sbjct: 77 EVCRQLR---TFSDAYIVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRR 133 Query: 121 QK 122 + Sbjct: 134 PR 135 >gi|302189715|ref|ZP_07266388.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + GF V A + + ++ P+ +++D + Sbjct: 4 KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ VR +D V + D + + R GA+ +++KP+N + + + + Sbjct: 63 TDVLSAVR---RCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLR 119 Query: 120 MQKSKDENQF 129 + N+ Sbjct: 120 RSQQNGNNER 129 >gi|297567182|ref|YP_003686154.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851631|gb|ADH64646.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 219 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 7/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ +R + G V EA EA +F + +V+D + Sbjct: 4 KVLVVEDDPGIRMLVATTLQSAGLAVLEARDGVEAMDFI---PEADLVVLDVGLPRQSGW 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ + V L D + G +GA+ +L KPF+ L ++ L + Sbjct: 61 EVLEAIRQNFG--QLPVLMLTGHSDETNRVRGLESGADDYLTKPFSVRELAARVKALLRR 118 >gi|254524029|ref|ZP_05136084.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp. SKA14] gi|219721620|gb|EED40145.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp. SKA14] Length = 237 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60 +L++D +R+ G+ V +A + E + E + + +++D + + Sbjct: 14 RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDM-DLVILDIGLPDMEGH 72 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ + V V L + + + GAN ++ KPF + L +R L + Sbjct: 73 EVLEQLRQ---WSQVPVIMLTVRAGEAEKVRALDTGANDYVTKPFGTQELMARVRALLRT 129 Query: 121 Q 121 + Sbjct: 130 R 130 >gi|218246197|ref|YP_002371568.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218166675|gb|ACK65412.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 715 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 LL+VD ++ R G+ V + A + + + +++D + E Sbjct: 9 LLIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVT-DLILLDIKLPDYDGYE 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V +L + + G G ++ KPF E + + +Q Sbjct: 68 ICRRLKADEQTAHIPVIFLSALNETFDKVQGFTVGGADYITKPFQIEEVLARVATHLSIQ 127 Query: 122 KSKDENQ 128 + + Q Sbjct: 128 RLQTSLQ 134 >gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 229 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +L+VD + ++ + GF+ A +E P+ +++D + G+ Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAF-RESRPDIVLLDLMLPGM 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 R + + V + L + D ++ G +GA+ +++KPF + L MR + Sbjct: 60 SGIDVA-RSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLR 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|118593336|ref|ZP_01550720.1| two-component response regulator [Stappia aggregata IAM 12614] gi|118434014|gb|EAV40671.1| two-component response regulator [Stappia aggregata IAM 12614] Length = 239 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD +R++ + GF + +A S + + + + P+ +V+D + G Sbjct: 7 TILIVDDDPEIRRLVGDVLRKEGFGIEQAMSGRD-MDAVLERVKPDAVVLDLMLPGEDGL 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + + +L D + G GA+ +++KPF +R L + Sbjct: 66 SICRRLRADDT---LPILFLSARGDEVDRVVGLEIGADDYIVKPFAPREFVARVRALLRR 122 Query: 121 QKSKDE 126 + Sbjct: 123 SGQGRQ 128 >gi|21241501|ref|NP_641083.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106847|gb|AAM35619.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 239 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +RK+ + G+ V A +V E + P+ +V+D M G Sbjct: 8 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 66 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A V L + I G GA+ +L KP N L +R L + ++ Sbjct: 67 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 126 Query: 124 KDEN 127 +E Sbjct: 127 SNEQ 130 >gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 910 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 3/118 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLVD + I + + G V A + E E E E + +++D M Sbjct: 789 KILLVDDNEINLYMMEAILLAAGAEVTLAENGQECLERLE-ESSYDLILMDVQMPVLDGY 847 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E +R+ + + + + + AG N + KPF E L ++ + Sbjct: 848 ETTRRIRKDEKYRALPIIAITANALSDDIEKCFEAGMNDHVAKPFKIEELDASIAKCL 905 >gi|332526126|ref|ZP_08402264.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109969|gb|EGJ10597.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 237 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 3/127 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+V+ + ++ G+ V A + +A+ ++ +LP+ +++D + G Sbjct: 1 MSHVLVVEDESAIAELISINLRHAGYEVTVAATADQAQAAVDR-VLPDLVLVDWMLPGQS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L+ R ++ + L + IAG AGA+ +L KPF+ + L MR + Sbjct: 60 GLQLARRWRAETRTREIPIIMLTARNEEADKIAGLDAGADDYLTKPFSPKELLARMRAVL 119 Query: 119 QMQKSKD 125 + + + Sbjct: 120 RRKAPEA 126 >gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 231 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58 M +L+VD + + G+ V A EA E E P+ +V+D M Sbjct: 1 MTKVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVES-FDPDVMVLDVMMPRLS 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + R++ + L ++ D + G GA+ ++ KPF+ + ++ L Sbjct: 60 GYDVC---RKLEDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALS 116 Query: 119 QMQK 122 + + Sbjct: 117 RRSR 120 >gi|326383751|ref|ZP_08205436.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL B-59395] gi|326197515|gb|EGD54704.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL B-59395] Length = 227 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD VR+ R + G+ V A EA E E P+ +V+D M + Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYTVETAGDGLEALEKVIAE-RPDLMVLDVMMPRLDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109 R G D+ + L + ++G AGA+ +L KPF E Sbjct: 61 EVCRRLRSAGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEE 107 >gi|294788403|ref|ZP_06753646.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC 29453] gi|294483834|gb|EFG31518.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC 29453] Length = 228 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 6/125 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESME-- 57 M +LLVD + ++ G V E + +++D M Sbjct: 1 MSRVLLVDDDDTLTELLAEYLTAEGLEVNRMPDGESGVKEILHSGNSYDVVILDSMMPKM 60 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 G L+ + VR + + L + D I G GA+ ++ KP L + + Sbjct: 61 GGLDVLKTVRAQSK---IPIIMLTAKGDDIDRIIGLEMGADDYVPKPCQPRELLARINAI 117 Query: 118 PQMQK 122 + + Sbjct: 118 LRRAQ 122 >gi|283778608|ref|YP_003369363.1| response regulator receiver modulated metal dependent phosphohydrolase [Pirellula staleyi DSM 6068] gi|283437061|gb|ADB15503.1| response regulator receiver modulated metal dependent phosphohydrolase [Pirellula staleyi DSM 6068] Length = 347 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L+ D + ++ H G+ V A + EA ++ P ++ D M + Sbjct: 1 MK-ILIADDDDLALEMLEHTLRRAGYEVETARNGREALARLKQVDAPRLVISDWEMPEMT 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E A +R + ++ L E+++ G AGA+ F+ KPFN L +R Sbjct: 60 GIELCAAIRSGGFDSYIYAILLTSHARPEEIVQGMSAGADDFVAKPFNTAELLVRIRAGA 119 Query: 119 QMQKSKDENQFLDAI 133 ++ + + A+ Sbjct: 120 RILSLETREMAIFAL 134 >gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 227 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 3/120 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+VD + ++ + G+ A EA + K P+ +++D M + Sbjct: 9 KILVVDDEIDILEIISYNLKSAGYDTITAKDGSEAVQKA-KVFRPDLIMLDIMMPNKNGI 67 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R++P D V +L D + I G GA+ ++ KP + L + L + Sbjct: 68 DTCREIRKLPEFKDTMVLFLTALNDEKSEIDGLNMGADDYIAKPIKPKLLVSRINALFRR 127 >gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 224 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + + Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATY-DLIVLDIMIPRIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V L + + + G GA+ +L+KPF + L +R L + + Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119 >gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 224 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + + + D GF V A +E P+ +++D + + Sbjct: 1 MKRILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRL-REAPPDLVILDLGLPDLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ +G +V + L E+ + GA+ +++KPF+ L ++ + Sbjct: 60 GGEVA-RRIRVGAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQVQLRH 118 Query: 121 QKSKDE 126 ++ ++ Sbjct: 119 REGGEQ 124 >gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ + +A + E EK + +++D + + Sbjct: 1 MVKILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGE-IDLILLDIMLPEIN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ + L ++G AGA+ ++ KPF E L +R + Sbjct: 60 GL-EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|28900003|ref|NP_799658.1| putative transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD 2210633] gi|153838791|ref|ZP_01991458.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus AQ3810] gi|260362138|ref|ZP_05775133.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus K5030] gi|260880582|ref|ZP_05892937.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus AN-5034] gi|260896323|ref|ZP_05904819.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus Peru-466] gi|260899738|ref|ZP_05908133.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus AQ4037] gi|27597185|dbj|BAC55119.1| probable two-component response regulator [Vibrio parahaemolyticus] gi|28808286|dbj|BAC61491.1| putative transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD 2210633] gi|149747771|gb|EDM58665.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus AQ3810] gi|308085158|gb|EFO34853.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus Peru-466] gi|308092714|gb|EFO42409.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus AN-5034] gi|308110410|gb|EFO47950.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus AQ4037] gi|308114648|gb|EFO52188.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus K5030] gi|328469988|gb|EGF40899.1| putative transcriptional regulator CpxR [Vibrio parahaemolyticus 10329] Length = 221 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + D G+ V A ++ EK + + +++D + + Sbjct: 1 MSRVLIVDDDVPLCELLEVVLQDEGYTVSSVHCGESALQYMEKTPV-DLVLLDVMLPNLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + L D M+ G +AGA+ ++ KPFN L ++ + + Sbjct: 60 GMQVARRICQRFA-TPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRR 118 Query: 121 QKSKDENQFL 130 + + Q + Sbjct: 119 VGLERQRQTI 128 >gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 223 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD +R + R + V A S EA + +++D + F Sbjct: 3 ILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEAL-KLHATQSFDLIILDLMLPDTTGFD 61 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + D+ + L I G + GA+ ++ KPFN L ++ L + Sbjct: 62 LIPQLRSSQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKR 118 >gi|284038429|ref|YP_003388359.1| Crp/Fnr family transcriptional regulator [Spirosoma linguale DSM 74] gi|283817722|gb|ADB39560.1| transcriptional regulator, Crp/Fnr family [Spirosoma linguale DSM 74] Length = 348 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 3/122 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M ++LL++ + +R+ + G+ V A + E P+ ++ D M Sbjct: 1 MKTILLIEDNEAIRENTAEILELTGYTVETAENGKLGVEKALA-RKPDLVICDIMMPVLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + + P + V +L + + + G GA+ +L KPF+ L A+ Sbjct: 60 GYGVLHIFNKNPQLSGVPFIFLTAKTERNDLRKGMELGADDYLTKPFDESELLSAIEGRL 119 Query: 119 QM 120 Sbjct: 120 NR 121 >gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787] gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787] Length = 229 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + V + + V + + EA C + + ++D + + F Sbjct: 2 NILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALN-CIETTKIDLALLDVMLPDIDGF 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R V L +VD+ I G GA+ ++ KPFN L ++ + Sbjct: 61 EILKRIREKY-TFPVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 117 >gi|194292019|ref|YP_002007926.1| response regulator in two-component regulatory system ompr family [Cupriavidus taiwanensis LMG 19424] gi|193225923|emb|CAQ71870.1| Response regulator in two-component regulatory system ompR family [Cupriavidus taiwanensis LMG 19424] Length = 246 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G V A + E R +K + + +V+D + G Sbjct: 7 ILIVDDDREIRELVAAYLERSGMRVSLAANGREMRAALDKGSV-DLVVLDLMLPGEDGLA 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R ++ V L + I G GA+ +L+KPF L +R + + Sbjct: 66 LCRDLRAGER-RNLPVLMLTARNEEADRILGLEMGADDYLVKPFAARELLARIRSVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|163814295|ref|ZP_02205684.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759] gi|158449930|gb|EDP26925.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759] Length = 244 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+VD +R + G+ V EA EA E + +V+D M Sbjct: 17 KVLVVDDEQDIRTLLNIYLKRLGYEVVEAADGVEAVETVRANSDIDLIVMDIMMPKLSGT 76 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ + V V +L + G + FL KPF + + L + Sbjct: 77 EACEQIRE---FSSVPVLFLTAKTKEPDQNEAYVVGGDDFLPKPFTQNDFNRKVNALIRR 133 Query: 121 QKSKDENQFLDA 132 + +DA Sbjct: 134 YRVYRGKSEVDA 145 >gi|149375903|ref|ZP_01893670.1| sensory box protein [Marinobacter algicola DG893] gi|149359783|gb|EDM48240.1| sensory box protein [Marinobacter algicola DG893] Length = 740 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +V + + ATS +A +K P+ L++D M + Sbjct: 24 RVMVVDDEPTNIRVLSEALKS-DYDIIVATSAEQALRLLDKGERPHLLLLDIMMPDMDGL 82 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q + V ++ +D G AGA F+ KP N ++R +R + Sbjct: 83 EMCRRLKQRQELQHIPVIFITALMDTGSEEKGFEAGAVDFIRKPINIPSVRARVRTHISL 142 Query: 121 QKSKDENQFLD 131 + D L+ Sbjct: 143 KGMLDHMVELN 153 >gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 230 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ + ++ GF + EA E + P+ +++D + G Sbjct: 5 QQILIVEDEPKIAQILVDFLTIEGFATQVVHNGDEA-EDAIRTKTPDCVILDLMLPGKDG 63 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ + V + L VD + G GA+ ++ KPF+ + ++ + + Sbjct: 64 LSICKDVRK---FSQVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|309803486|ref|ZP_07697579.1| response regulator receiver domain protein [Lactobacillus iners LactinV 11V1-d] gi|308164370|gb|EFO66624.1| response regulator receiver domain protein [Lactobacillus iners LactinV 11V1-d] Length = 229 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 1/122 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + ++ + + A EA + +++D M + Sbjct: 1 MVKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMDPSITCIILDIMMPEMS 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++++ ++V + + I G GA+ ++ KPFN + +R L + Sbjct: 61 GL-DFIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRR 119 Query: 121 QK 122 + Sbjct: 120 SE 121 >gi|301630365|ref|XP_002944292.1| PREDICTED: acetoacetate metabolism regulatory protein AtoC-like, partial [Xenopus (Silurana) tropicalis] Length = 467 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 5/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 ++L+VD + + + G VF A + A + E+E + ++ D M G+ Sbjct: 38 NVLVVDDEPKLCDLLSSALSQSGIQVFTAGNGLHALKVLEQED-IDLVISDWRMPGMDGP 96 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A ++ + V + + + R GA ++ KPF+ + L + + Q Sbjct: 97 ALLAEIKVR--YPHLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQF 154 Query: 121 QKSKDENQFLDA 132 + +N + A Sbjct: 155 RDIMRDNARMRA 166 >gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+V+ + + G++V +A + E E + +++D + + Sbjct: 5 KILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNEN-FDLIILDVMLPSLNGM 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ V V L + + + G GA+ ++ KPF E L +R + Sbjct: 64 EVLRRLRQNSE---VPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKH 120 Query: 121 QK 122 ++ Sbjct: 121 KR 122 >gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + +++D + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|288935841|ref|YP_003439900.1| response regulator receiver modulated serine phosphatase [Klebsiella variicola At-22] gi|290509868|ref|ZP_06549239.1| response regulator [Klebsiella sp. 1_1_55] gi|288890550|gb|ADC58868.1| response regulator receiver modulated serine phosphatase [Klebsiella variicola At-22] gi|289779262|gb|EFD87259.1| response regulator [Klebsiella sp. 1_1_55] Length = 404 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 8/139 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ S + R++ + +G++V EA + A E + + + ++ D M + Sbjct: 4 QHVLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVAALAILENQPV-SLVISDWEMPEMNG 62 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VR+ G V++ L D + G AGA+ FL KP + LR + + Sbjct: 63 LTLCREVRRRQFGHYVYLILLTAREDPGDLTQGFAAGADDFLSKPVEQSELRARLHAGAR 122 Query: 120 MQKSKDEN-----QFLDAI 133 + + + + +A+ Sbjct: 123 ILSLEADLAARNTRLSEAL 141 >gi|317054508|ref|YP_004118533.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] gi|316952503|gb|ADU71977.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 261 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + + G+ + S K P+ +++D + G Sbjct: 27 THILIVEDDAEISRSLATFLQAKGYTATTSDSAEAGL-LFLKTHAPDLILLDLMLPGESG 85 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 L+F +R + + D + G GA+ +++KPF+ L +R + + Sbjct: 86 LDFCRKIRS---PDSPPIIMVTALDDPIDNVVGLELGADDYVIKPFDLNVLLARIRAVLR 142 Query: 120 MQKSKDENQ 128 + + Q Sbjct: 143 RTSAIETAQ 151 >gi|254292390|ref|YP_003058413.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254040921|gb|ACT57716.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 228 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFND-FGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 ++L+VD + +R+ F GF + +A + E E E P+ +++D M + Sbjct: 5 KTILIVDDDNDLREALAEQFERHEGFSIIQAHNATEGMNLAEAEK-PDLVILDVEMPDMD 63 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ G V V L + M+ G +GAN ++ KPF L +R Sbjct: 64 GRDACKLMRKH--GLRVPVIMLTGQDSDSDMVLGLDSGANDYVAKPFKFTVLLARVRAHL 121 Query: 119 Q 119 + Sbjct: 122 R 122 >gi|330941199|gb|EGH44073.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 229 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + GF V A + + ++ P+ +++D + Sbjct: 4 KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + ++ VR +D V + D + + R GA+ +++KP+N + + + + Sbjct: 63 TDVLSAVR---RCSDTPVIMVTAMGDEPEKLCALRYGADDYVVKPYNPREVVARVHAVLR 119 Query: 120 MQKSKDENQF 129 + N+ Sbjct: 120 RSQQNGNNER 129 >gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 230 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD + + + GF V +A + +A + E E + +++D +E + F Sbjct: 4 KIIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALDLVEAEN-FDLMILDIMLEDMDGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ + L +D I G GA+ ++ KPFN + ++ + Sbjct: 63 SVCKKIREKHYF---PIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRR 119 Query: 121 QKSKDENQFLD 131 + ++ + + Sbjct: 120 SQKYNKTEKIK 130 >gi|295687869|ref|YP_003591562.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] gi|295429772|gb|ADG08944.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] Length = 121 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L VD S +R + + G+ V EA + E + + +V D +M + Sbjct: 1 MSAILTVDDSASIRAAIKIALSSEGYNVTEAANGAEGLDKASAGG-FDLIVTDLNMPVMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R P G V + +L E D + AGA +L KPF + L ++++ Sbjct: 60 GLTMIRQLRARPAGAGVPIIFLTTESDADVKAEAKAAGATGWLTKPFEPDQLVRVVKKVL 119 >gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 236 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ ++ + N + V + +A ++ + +V+D + G+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R + L + + + G GA+ +L+KPF + L +R L + + Sbjct: 73 RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131 >gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 645 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD + + + G V S +A E K P+ +++D M G+ F Sbjct: 9 RIMIVDDTPANLNLLMDMLLKKGHQVVAFPSGQQALEAASKTP-PDLILLDIRMPGMDGF 67 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++Q P D+ V ++ D + G ++ KPF E + + ++ Sbjct: 68 EVCRKLKQDPDLQDIPVIFISALQDVSDKVQAYNTGGVDYVSKPFQPEEVYARVETHLRL 127 Query: 121 QKSKDENQ 128 + E++ Sbjct: 128 NRLLRESE 135 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+ + + R + G V + + +++D + G Sbjct: 522 RILIAEDDSLSRIFFEKILQGEGHRVESVEHGDQVMSRLAMNDY-DCILMDIELPGIRGD 580 Query: 61 EFIAHVRQMPLG---TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 E +R D+ ++ + +AG + +L KP + R A ++ Sbjct: 581 EITTRIRAADNLGAKKDIPIFAVTAYTQPGDREHFLKAGMDDYLPKPLGIQEFREAFKKH 640 >gi|218282853|ref|ZP_03489006.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989] gi|218216309|gb|EEC89847.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989] Length = 233 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R+ + G+ V A + E E E + ++D M + Sbjct: 4 TILVVEDEQGIREAIGIYMKNQGYNVILAANGKEGLEKIETND-IHLAIVDIMMPVMDG- 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 I+ V + D + +L + + I G GA+ ++ KPF L +R + + Sbjct: 62 ISMVMEARKHHDFPILFLSAKSEDIDKITGLNIGADDYITKPFQSMELVARVRSHLRRYE 121 Query: 123 S 123 Sbjct: 122 Q 122 >gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 503 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 18/147 (12%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61 +L++D + ++ L G+ V T + P+ +++D +M + E Sbjct: 8 ILVIDDTPENLQLLTRLLTAQGYKVRSVTKGSTGCRAAQSAP-PDLVLLDVNMPEMNGYE 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119 ++ P D+ V ++ D + + G ++ KPF E + + Sbjct: 67 VCQQLKARPETQDIPVIFISAHEDVLEKVKAFSMGGVDYITKPFQVEEVLARVEHHLTIQ 126 Query: 120 -------------MQKSKDENQFLDAI 133 Q+ ++ Q L A+ Sbjct: 127 RLQRQLQHQNAQLQQEIQEREQVLQAL 153 >gi|160884454|ref|ZP_02065457.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483] gi|237718085|ref|ZP_04548566.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|260174656|ref|ZP_05761068.1| two-component system response regulator [Bacteroides sp. D2] gi|293369752|ref|ZP_06616328.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|299145993|ref|ZP_07039061.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23] gi|315922919|ref|ZP_07919159.1| two-component system response regulator [Bacteroides sp. D2] gi|156110193|gb|EDO11938.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483] gi|229452506|gb|EEO58297.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|292635174|gb|EFF53690.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|298516484|gb|EFI40365.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23] gi|313696794|gb|EFS33629.1| two-component system response regulator [Bacteroides sp. D2] Length = 231 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++LLV+ + + + + F++ A E EL P+ LV D M + F Sbjct: 7 TVLLVEDEQTLAMIIKDTLEENDFIIHTANDGEEGLSLFF-ELHPDVLVADVMMPKMDGF 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R V +L ++ G GAN +L KPF + L ++ L Sbjct: 66 EMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGIQELIIRIKALMGKAF 125 Query: 123 SKDENQ 128 EN+ Sbjct: 126 LFTENK 131 >gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 226 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ + +A + E EK+ + +++D + + Sbjct: 1 MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEA-DLVLLDIMLPEIN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ + L ++G AGA+ ++ KPF E L +R + Sbjct: 60 GL-EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1] gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1] Length = 222 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +L+V+ + + + F V A + E + L++D + G + Sbjct: 2 RILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSY-DLLLLDWMLPGISGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E R+ +D + +L + ++ I G ++GAN ++ KPF+ E L +R + Sbjct: 61 ELTRQFRKQ--FSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRA 118 Query: 121 QKSKDE 126 +K E Sbjct: 119 KKGAKE 124 >gi|88603985|ref|YP_504163.1| response regulator receiver domain-containing protein [Methanospirillum hungatei JF-1] gi|88189447|gb|ABD42444.1| response regulator receiver domain protein (CheY-like) [Methanospirillum hungatei JF-1] Length = 436 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+V+ + + RHL G V + + EA E E E P+ ++ D M + Sbjct: 11 ILIVEDNRTQAEYLRHLLEKRGHQVTVSQNGFEALERIE-EKRPDIILTDVMMPDMDGYT 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 V+Q D+ V + +I G AGA++F++KP++ E + + + Q + Sbjct: 70 LCKTVKQHEKFHDIPVILVTHLYSPVDVIKGLEAGADNFIIKPYDPEYIFSRITGIMQAK 129 Query: 122 K 122 Sbjct: 130 N 130 >gi|291461067|ref|ZP_06026728.2| DNA-binding response regulator ArlR [Fusobacterium periodonticum ATCC 33693] gi|291379171|gb|EFE86689.1| DNA-binding response regulator ArlR [Fusobacterium periodonticum ATCC 33693] Length = 233 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M+ +L+++ ++++ G++V A E E K + +++D + Sbjct: 10 MNKILIIEDDKNIQRLLSLELKHKGYIVSSAYDGEEGLELFTKNSY-DVVLLDLMLPKKS 68 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 E R++ TD + + + + GAN ++ KPF E L +R + Sbjct: 69 GKELCQEFRKL---TDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVT 125 Query: 119 QMQKSKDENQ 128 + +++ + Q Sbjct: 126 RNRETSSDKQ 135 >gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + ++++ + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLNLMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] Length = 230 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ + E + + +++D + + Sbjct: 4 KKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDY-DLILLDLMLPELDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ D + + +AG GA+ ++ KPF E L +R + + Sbjct: 63 FEVA-RRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRRE 121 Query: 122 K 122 + Sbjct: 122 E 122 >gi|288937248|ref|YP_003441307.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290512652|ref|ZP_06552018.1| two-component system, OmpR family, catabolic regulation response regulator CreB [Klebsiella sp. 1_1_55] gi|288891957|gb|ADC60275.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289774993|gb|EFD82995.1| two-component system, OmpR family, catabolic regulation response regulator CreB [Klebsiella sp. 1_1_55] Length = 229 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 + LV+ + + GF V A E P+ ++D + + F Sbjct: 5 RIWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAA-AHQAPDVAILDVGLPDISGF 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + V +L D + G GA+ ++ KPF+ + +R + + Sbjct: 64 ELCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121 >gi|227494938|ref|ZP_03925254.1| response regulator [Actinomyces coleocanis DSM 15436] gi|226831390|gb|EEH63773.1| response regulator [Actinomyces coleocanis DSM 15436] Length = 226 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +++LV+ + + + G+ V + A E + ++D + + Sbjct: 1 MTTVILVEDDSAIAEPLARALSREGYDVRSHDTGAAALTEVEAA---DLFILDLGLPDMD 57 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 LG + L D M+ G AGA+ ++ KPF L +R L + Sbjct: 58 GLDVARHVRKLGKTTPILILTARADEIDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117 Query: 121 QKSKDENQFLDA 132 S++ + L A Sbjct: 118 IGSEEPEEDLVA 129 >gi|197303952|ref|ZP_03168984.1| hypothetical protein RUMLAC_02689 [Ruminococcus lactaris ATCC 29176] gi|197296920|gb|EDY31488.1| hypothetical protein RUMLAC_02689 [Ruminococcus lactaris ATCC 29176] Length = 236 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 48/128 (37%), Gaps = 2/128 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L+++ ++ R + + V A + E + P+ +++D + + Sbjct: 5 SILIIEDEKNIQTFMRKILIRHDYRVLCADTGTEGLSLIRSQC-PDLVLLDLGLPDMNG- 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + + + + + + + GA+ ++ KPF L +R + Sbjct: 63 NQIIRDVRTWSSIPIIVISARSAEREKVQALDLGADDYITKPFGTSELLARIRTSLRHSN 122 Query: 123 SKDENQFL 130 +Q L Sbjct: 123 RMHTDQEL 130 >gi|220928356|ref|YP_002505265.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998684|gb|ACL75285.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 231 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R++ F G+ V A+ E E ++ +++D M + Sbjct: 4 KNMLVVDDDEDIREMIGTYFTREGYKVCFASDGKEGLELAKQNNY-AIILLDVMMPQMDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + + L +D V L + + + G G + +L+KPF+ L ++ + + Sbjct: 63 YT-MLANLRLFSDTPVILLTAKGEQMSKVKGFTKGCDDYLVKPFDFAELSLRIQAILKR 120 >gi|110803699|ref|YP_697777.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110684200|gb|ABG87570.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 234 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G+ VF+ ++ E E EKE + V+D M + Sbjct: 5 NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D + L + + I G GA+ ++ KPFN L + + Sbjct: 64 TMVMKIRERY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120 >gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1] gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia coli UTI89] gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli APEC O1] gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034] gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146] gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252] Length = 260 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ ++ G+++ + + K+ +++D + G+ Sbjct: 38 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L + + G +GAN +L+KPF+ L +R + Sbjct: 96 GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 Query: 121 QKSKD 125 + + Sbjct: 155 HHALN 159 >gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei] gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei] gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 224 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++LL++ +VR+ G V A + + P +V+D + G+ Sbjct: 1 MAAILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAP-PELVVLDLMLPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F R + V V L D ++ G AGA+ +++KP L +R + + Sbjct: 60 GFEVC-RGIRAAGPVPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRR 118 >gi|77458313|ref|YP_347818.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382316|gb|ABA73829.1| putative two-component response regulator transcriptional regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 246 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ + G + R F E + + +V+D M G Sbjct: 7 ILIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLEANTV-DLIVLDIMMPGDDGLL 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + L D I G GA+ +L KPF L + + + Sbjct: 66 LCRELRS-GKHKATPILMLTARNDETDRILGLEMGADDYLTKPFAARELLARINAVLRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 228 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + ++V A E F + +++D + + Sbjct: 2 RILIVEDDKDLNRQLAEALEEQSYVVDRAYDGEEG-HFLGDTEPYDAVILDIGLPEMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G + V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRADGRAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118 >gi|119488980|ref|ZP_01621915.1| Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] gi|119454936|gb|EAW36079.1| Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] Length = 234 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ +R L + A + E KE+ P+ ++ D M G Sbjct: 1 MKKILVIEDDEPIRMSILELLMIEQYQGIGAEDGYQGLELA-KEVQPDLIICDIMMPGFD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++Q ++ +L + + G GA+ ++ KPF L A++ Sbjct: 60 GYAVLNELQQESGTANIPFIFLTAKTERHDQRMGMELGADDYITKPFTTTELLEAVKTRL 119 Query: 119 QMQK 122 + Q+ Sbjct: 120 KKQQ 123 >gi|303257821|ref|ZP_07343831.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47] gi|330998757|ref|ZP_08322485.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|302859424|gb|EFL82505.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47] gi|329576254|gb|EGG57770.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 237 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD +R++ GF V A S A E+ K + +++D M + Sbjct: 5 TTILIVDDESKIRRLLSRSLEAEGFDVAVADSAMSASEYL-KNGHCDLIILDYMMPEIDG 63 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F+A +R+ + V L + K GA+ +++KPF+ E + +R + + Sbjct: 64 MAFLAELRKKSS---IPVIMLSAREEIAKKTQALELGADDYVVKPFSIEEMTARIRAILR 120 Query: 120 M 120 Sbjct: 121 R 121 >gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 237 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 5/118 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62 LL + +R G+ V EA + P+ LV+D M G+ Sbjct: 2 LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTP-PDILVLDVMMPGIDGLQV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G + L V+ IAG AGA+ +++KPF+ E + +R L + Sbjct: 61 CRVLRA--EGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116 >gi|291446359|ref|ZP_06585749.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349306|gb|EFE76210.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 247 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L+V+ +R+ + +G+ V A E + L++D + + Sbjct: 17 SVLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAH-DLLILDVMLPALDGI 75 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ V V + D ++AG AGA+ +++KP + + +R L + Sbjct: 76 GLCHRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRR 132 >gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 228 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 LLL++ +R + G V A + + E +E P+ +V+D + G+ F Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLPGIDGFE 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R + + L D ++ G +GA+ +++KP L +R + + Sbjct: 66 VCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRG 122 Query: 122 KSKDEN 127 + + + Sbjct: 123 ERESTD 128 >gi|239834699|ref|ZP_04683027.1| Regulatory protein virG [Ochrobactrum intermedium LMG 3301] gi|239822762|gb|EEQ94331.1| Regulatory protein virG [Ochrobactrum intermedium LMG 3301] Length = 248 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G A + R F E + + +V+D M G Sbjct: 9 ILIVDDDREIRELVSSYLKKNGLRTSVAADGRQMRTFLEANAV-DLIVLDVMMPGDDGLV 67 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V V L D I G GA+ +++KPF L ++ + + Sbjct: 68 LCRELRS-GKHRSVPVLLLTARSDEMDRIIGLEMGADDYIVKPFAARELLARIKAVLRRT 126 Query: 122 KSKDEN 127 + N Sbjct: 127 RMLPPN 132 >gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 230 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + + + GF V AT+ EA E P +V+D + F Sbjct: 6 RVLVVDDQPNIVDMLATVLRFHGFDVVTATTAAEALRRA-GESHPRLVVLDVLLPDGDGF 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R G ++ + +L IAG G + ++ KPF+ E L +R + + Sbjct: 65 EVCRTLRA--AGHEIGIVFLTARDAPRDRIAGLTYGGDDYVTKPFSVEELVARVRAVLRR 122 >gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 242 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 14 NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQIAILDIMMPQMDG 72 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 73 IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 129 Query: 120 MQKSKDEN 127 ++N Sbjct: 130 RYTYFNQN 137 >gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] Length = 227 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + +V + G+ A + EA E E + +++D + + Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFE-NGNWDLILLDVMLPNISGL 62 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R + + L ++G GA+ ++ KPF E L +R ++ Sbjct: 63 EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122 Query: 123 SKDENQ 128 E + Sbjct: 123 VVKEEE 128 >gi|109898565|ref|YP_661820.1| response regulator receiver modulated metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c] gi|109700846|gb|ABG40766.1| response regulator receiver modulated metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c] Length = 331 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +V + + D + + A S EA E++ LP+ +++D M G+ Sbjct: 9 QKVLIVDDEPANLRVLKRILGDL-YRLSFAKSGEEALRLVERD-LPDLILLDVMMPGMTG 66 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ + V ++ D G GA ++ KP + ++ +R Sbjct: 67 FEVCKSLKDSRQTRAIPVMFVTALNDEVDEAKGFDVGAVDYITKPVSPAVVKARVRTHLS 126 Query: 120 MQKSKDENQF 129 + ++ DE + Sbjct: 127 LVQA-DELRR 135 >gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 265 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L V+ ++R+ + GF V + E P+ ++D + G+ Sbjct: 38 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAG-APDIALLDVMVPGMDGV 96 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 97 SLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153 >gi|298244853|ref|ZP_06968659.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ktedonobacter racemifer DSM 44963] gi|297552334|gb|EFH86199.1| two component, sigma54 specific, transcriptional regulator, Fis family [Ktedonobacter racemifer DSM 44963] Length = 465 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 1/128 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD + G+ V+ A+ +K + +++D + + Sbjct: 5 ILIVDDEPHLPHQLARYLRKRGYDVYTASDGEAGLRELQKNT-IDLVLLDLRLPKLSGLE 63 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 R ++ V L D + + + GA+ ++LK F+ E L ++ Sbjct: 64 VLRRIREHEAELPVVILTAYGDVQTAVEAMKLGASDYILKGFDLEELLLVVKRALDTSAM 123 Query: 124 KDENQFLD 131 E + L Sbjct: 124 SRELRQLK 131 >gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC 27029] Length = 1227 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L D + +R+ L + + V EA E + ++ D M Sbjct: 625 RILFADDNSDLREHVVRLLSPA-YEVVAVPDGVEALRLAV-ETPFDLVLTDVMMPRLDGF 682 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +A +R P V + L + +AG GA+ +L KPF+ + L +R ++ Sbjct: 683 GLVAALRAEPATRHVPIVLLSARAGAAEEVAGLSTGADDYLTKPFSSQELVARVRANVEL 742 Query: 121 QKSKDE-NQFLDAI 133 + + + + L A+ Sbjct: 743 GQLRGQIIRRLRAL 756 >gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R + + G+ VF+A+ EA E E+E + N +V+D M + Sbjct: 3 NNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEV-NLMVLDIMMPDMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + L +V+ I G GA+ ++ KPFN L +R L + Sbjct: 62 LEVCKRARQKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRR 119 >gi|169343028|ref|ZP_02864056.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298937|gb|EDS81011.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 234 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G+ VF+ ++ E E EKE + V+D M + Sbjct: 5 NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D + L + + I G GA+ ++ KPFN L + + Sbjct: 64 TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120 >gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 228 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD +R+ GF V A+ A CE P+ LV+D + G Sbjct: 4 RRVLVVDDEATIREAVAARLRAEGFDVVTASDGPSAVAECEASS-PDVLVLDVMLPGYDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 R V V L D M+ G GA+ +L KPF+ L + L + Sbjct: 63 LEVCRRVQASRP-VPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRA 121 Query: 122 KSKDE 126 E Sbjct: 122 DRAQE 126 >gi|330502123|ref|YP_004378992.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328916409|gb|AEB57240.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 244 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L+ + + + G A+ +A + L P+ L++D M + Sbjct: 18 VLIAEDEAEIADILIAYLQRSGLRTQHASDGQQALAM-HQSLKPDLLLLDVQMPVLDGWK 76 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ +R D V L + G R GA+ +++KPFN + ++ + + Sbjct: 77 VLSEIRSRG---DTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRRT 133 Query: 122 KSKD 125 ++ Sbjct: 134 RASA 137 >gi|303240453|ref|ZP_07326970.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592018|gb|EFL61749.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+ D + + V +A + +A + E + +++D M + Sbjct: 5 NVLVCDDDRAIVDALEVYLRQENYEVIKAYTGKQALKAL-AEQKIHLILLDVMMPEMDGL 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A V+ ++ + L + + I G GA+ ++ KPFN L ++ + Sbjct: 64 SATVKIREEL-NIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELMARVKSQMRR 120 >gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 228 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+++ + + G+MV + E + +++D + + Sbjct: 5 KILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERA-TGGKFDLIILDVMLPSLNGM 63 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +RQ+ V L + + + G GA+ ++ KPF E L +R + + Sbjct: 64 EVLRRLRQVSE---TPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKR 120 Query: 121 QKSKDENQ 128 +K + + Sbjct: 121 RKPANHKR 128 >gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 224 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 40/118 (33%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+ + ++ H G+ V A E + +++D + V F Sbjct: 2 RILIAEDDEVLSDGLCHSMRQSGYAVDCVKDGHSANLILSGEQPFDLVILDLGLPKVDGF 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V V L + G GA+ +++KPF+ L +R L + Sbjct: 62 SVLRSLREKNRQVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRR 119 >gi|237723330|ref|ZP_04553811.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447852|gb|EEO53643.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 960 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L++D + +R L + + V EA E K +P+ ++ D M G+ Sbjct: 715 VLIIDDNADIRLYVHGLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGMDGIE 772 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ + V L E+ I G GA+S++ KPF+ + L +R L Sbjct: 773 CCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDSH 832 Query: 122 KSKDE 126 + + Sbjct: 833 RRLKQ 837 >gi|197105292|ref|YP_002130669.1| response regulator [Phenylobacterium zucineum HLK1] gi|196478712|gb|ACG78240.1| response regulator [Phenylobacterium zucineum HLK1] Length = 251 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD +R++ A EA E P+ +++D +M Sbjct: 20 MPQVLVVDDDPHIRELLVFALEKARLSARVAEDG-EAALAAVAEQAPDLVILDINMPRLD 78 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE +R D+ + +L D + G G + +++KPF+ + ++ + Sbjct: 79 GLEVCRRLRAQG---DLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAIL 135 Query: 119 QMQKSKDENQ 128 + + + E + Sbjct: 136 RRVRGRAEPR 145 >gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 227 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ R + G++V E E + LV+D + G + Sbjct: 2 RILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGLHQAETEDY-DLLVLDVMLPGQDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + V +L D + G GA+ +L KPF+ L ++ + + + Sbjct: 61 T-LLQNLRRSKSTPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLRRGQ 119 Query: 123 SKDENQFLDA 132 ++ N A Sbjct: 120 PRESNTLRVA 129 >gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58] gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58] Length = 221 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + R G+ V AT + F + +V+D + + Sbjct: 2 RLLIVEDEPSLGHQLRTTLEGAGYAVDLATDGEDG-HFLGSTESYDAVVLDLGLPTIDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R G V L + +AG AGA+ +L KPF E L +R L + Sbjct: 61 TVLDRWRKEGKTFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRR 118 >gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 230 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ + E + + +++D + + Sbjct: 4 KKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDY-DLILLDLMLPELDG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ D + + +AG GA+ ++ KPF E L +R + + Sbjct: 63 FEVA-RRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRRE 121 Query: 122 K 122 + Sbjct: 122 E 122 >gi|1705849|sp|Q07783|CHVI_RHIRD RecName: Full=Transcriptional regulatory protein ChvI gi|304125|gb|AAA03553.1| putative [Agrobacterium tumefaciens] Length = 241 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ LVD + G+ V T A + P + D M + Sbjct: 1 MQTIALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARP-PQLAIFDIKMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ V +L + + + G + GA+ F+ KPF++ L ++ + + Sbjct: 60 GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118 Query: 121 QKSKD 125 S++ Sbjct: 119 ASSRE 123 >gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] Length = 229 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + R N G+ V +A E ++ P+ +++D + Sbjct: 3 QHILVIEDEFQIAAIHRDYLNAAGYEVTCLDDGTQAVE-WIRDNTPDLILLDLMLPVKDG 61 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 VRQ ++V + + +VD + G GA+ ++ KPF+ + +R + + Sbjct: 62 HTICQEVRQ---FSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVLR 118 Query: 120 MQK 122 Q+ Sbjct: 119 RQE 121 >gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 215 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LLL+D + + + G+ V A EA + E + +P+ ++ D M + Sbjct: 10 QKLLLIDDDPNLILLVKDYLEFRGYEVMTAEHGKEALDILE-QDIPDMIICDVMMPEMDG 68 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + VR + + V +L + + I G GA+ +++KPF E L + + Sbjct: 69 YTLVEKVRDDSRTSCIPVLFLSAKGQSQDRIKGLNKGADIYMVKPFEPEELVAQVESCLK 128 Query: 120 M 120 Sbjct: 129 Q 129 >gi|329939932|ref|ZP_08289214.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045] gi|329300758|gb|EGG44654.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045] Length = 646 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+VD + G V A + E E E+ +++D M + Sbjct: 526 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDGY 585 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+MP + + L + +GA+ ++ KP + + L M + + Sbjct: 586 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMNQWMR 644 >gi|317485002|ref|ZP_07943885.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923740|gb|EFV44943.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 247 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLVD +R V L DFG+ V A S EA E P +V D M G+ Sbjct: 6 RVLLVDDEPGIRHVLGALIRDFGYDVHTAESAREALEAFTANPFP-IVVTDIRMPGMDGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R D V + D + + R GA F+ KP N + L +++ + Sbjct: 65 ALLERVRNQNPDTQVVMITGHGDMDNAVECLRLGAADFIAKPVNDDLLEHSLKRAAEQYS 124 Query: 123 SKDENQF 129 +++ + Sbjct: 125 LREQIRR 131 >gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 227 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+V+ + + + + G +V A ++ + + L+ D + Sbjct: 1 MK-ILIVEDEARIALLVKRGLEEQGHIVAVAYDGMAGKKLALQHDY-DLLISDIILPLLS 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E +R ++ V L + + G AGA+ +L+KPF+ L +R + Sbjct: 59 GIELCREIRM--AKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVM 116 Query: 119 QMQK 122 + Sbjct: 117 NRKN 120 >gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 221 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+VD + ++ + G S + E P+ +++D + G+ Sbjct: 2 LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFES-FRPDLVLLDLMLPGMDGMSV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R + V + L + D ++AG AGA+ +L KPF L ++ + Sbjct: 61 CRQIRA---TSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTD 117 Query: 123 SKDE 126 E Sbjct: 118 QLGE 121 >gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional regulator [Acinetobacter baumannii AYE] gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624] gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional regulator [Acinetobacter baumannii AYE] gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624] gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] Length = 228 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ + E +++ + L++D + + Sbjct: 7 RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIEGW 65 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + V +L + + G GA+ +L KPF+ L ++ L + Sbjct: 66 SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 122 Query: 121 QKSKDENQF 129 Q+ EN+ Sbjct: 123 QQYLQENEL 131 >gi|168208958|ref|ZP_02634583.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170712748|gb|EDT24930.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] Length = 234 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G+ VF+ ++ E E EKE + V+D M + Sbjct: 5 NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D + L + + I G GA+ ++ KPFN L + + Sbjct: 64 TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120 >gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 223 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + + + G++V +A E F + +++D + + Sbjct: 2 RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPELDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120 Query: 123 SKDENQFL 130 ++ + Sbjct: 121 GHSSSEII 128 >gi|156740851|ref|YP_001430980.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] gi|156232179|gb|ABU56962.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] Length = 508 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 5/133 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+V+ +V L + GF V A + EA + + + ++ D M + Sbjct: 13 RVLIVEDDPMVSSFCARLLHMKGFAVKTACNGREALDILQTHP-FDLVLTDLQMPEMGGM 71 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ D + + GA +L KPF+ + L +R + Sbjct: 72 ALLRELREHYADLDA--IMFTAYATVDTAREALKLGAFDYLTKPFSVDELERTVRRAVEW 129 Query: 121 QKSKDENQFLDAI 133 ++ + E Q L + Sbjct: 130 RRVRQERQRLSEV 142 >gi|16118480|gb|AAL14442.1|AF370885_4 AdeR response regulator [Acinetobacter baumannii] Length = 228 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59 +L+V+ + + + + G V A + +A E + +++D + Sbjct: 13 KVILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIE-LHASQPIDLILLDIKLPELNG 71 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E + +RQ V L + R GA+ F++KPFN + ++ + + Sbjct: 72 WEVLNKIRQKA---QTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLR 128 Query: 120 MQK 122 + Sbjct: 129 RTQ 131 >gi|82775964|ref|YP_402311.1| DNA-binding transcriptional activator KdpE [Shigella dysenteriae Sd197] gi|309786352|ref|ZP_07680978.1| KDP operon transcriptional regulatory protein kdpE [Shigella dysenteriae 1617] gi|81240112|gb|ABB60822.1| regulator of kdp operon [Shigella dysenteriae Sd197] gi|308925746|gb|EFP71227.1| KDP operon transcriptional regulatory protein kdpE [Shigella dysenteriae 1617] Length = 225 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G VFEA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ MR + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARMRVALRR 118 Query: 121 QKSKD 125 + Sbjct: 119 HSATA 123 >gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121] Length = 224 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ L+VD + F + T+ EA F + + ++D M G+ Sbjct: 1 MNRCLIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLD-NHQVDIAIVDIMMHGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +++ D+ V L +G + +L KPF + L F ++ + Sbjct: 60 GFELCHMIKED---YDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVL 116 Query: 119 QMQKSKDENQF 129 + + + Sbjct: 117 RRYHIHTDEKL 127 >gi|327462011|gb|EGF08340.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|332362240|gb|EGJ40040.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 234 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LL + + +V G+ V A EA + KE + +++D M Sbjct: 1 MMKILLAEDEQQLSRVLETAMIHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + +RQ T V L + + + G AGA+ +L KPF+ + L +R + Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 119 QM 120 + Sbjct: 118 RR 119 >gi|326801872|ref|YP_004319691.1| response regulator receiver sensor signal transduction histidine kinase [Sphingobacterium sp. 21] gi|326552636|gb|ADZ81021.1| response regulator receiver sensor signal transduction histidine kinase [Sphingobacterium sp. 21] Length = 528 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 +L D +R+ L + V + A E K P+ ++ D M G+ Sbjct: 43 VLFADDDANMREYVSCLLKTQ-YRVTVVQNGIMALELA-KTTQPDLILSDIIMPGMDGIQ 100 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + +RQ P D+ + L + I AGA+ +L+KPF L ++ ++ Sbjct: 101 LLQALRQDPRTQDIPLILLSIRASQASKIDSFDAGADDYLVKPFTPPELLARIKAHITLK 160 Query: 122 KSKDE 126 +++++ Sbjct: 161 RTRNQ 165 >gi|325663729|ref|ZP_08152133.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470222|gb|EGC73455.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium 4_1_37FAA] Length = 231 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+ D + + G+ V +A EA + + + + L+ID M + Sbjct: 1 MFNVLVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEV-DLLIIDVMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A ++ + + + L + + I G GA+ +L KPFN L ++ + Sbjct: 60 GIRATLKIREKNS-LPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRR 118 >gi|315182011|gb|ADT88924.1| response regulator receiver protein [Vibrio furnissii NCTC 11218] Length = 315 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD ++ L + V ATS +A C +E P+ +++D M + + Sbjct: 17 TVLVVDDQPTNIQLIYQLLKKE-YDVLMATSGQQALAVC-REHKPDLILMDVLMPDMNGW 74 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +++ P + V ++ D + A AGA FL KP N TL+ +R + Sbjct: 75 DTCQTLKRDPDIATIPVIFVTALTDQDDENACWDAGAVDFLQKPINANTLKHRVRAHLTL 134 Query: 121 QKSKDENQFLD 131 + D + L Sbjct: 135 KHQSDLLRSLA 145 >gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 225 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + ++ + GF+ A E + +V+D + + + Sbjct: 2 KILIVEDERSLGRLLKESLEREGFVAELAVDGEEGLYMAL-NGPFDVIVLDILLPKLTGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G+ + V L E + G GA+ +L KPF+ L ++ L + + Sbjct: 61 QVLEKIRDSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLLRRAQ 120 >gi|296187341|ref|ZP_06855736.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|296047863|gb|EFG87302.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 6/118 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + + + D GF++ A EA KEL P+ +++D + G E Sbjct: 11 ILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLA-KELNPSIIILDIMLPGINGYE 69 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +++ + + L + D + + G GA+ +++KPF+ + L + + Sbjct: 70 VCSEIKK---WVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLR 124 >gi|295695240|ref|YP_003588478.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295410842|gb|ADG05334.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 236 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +RK R G+ EA + + P+ +++D + + Sbjct: 6 RIVIVDDEPQIRKFLRVSLRAHGYETLEAETGEDGLRQVTAGK-PDLVILDLGLPDMRG- 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + + V V L ++ E+ I AGA+ ++ KPF L +R + Sbjct: 64 ADVLRAIREWSSVPVIILSVQEQEEEKIRALDAGADDYITKPFGMGELLARIRVALR 120 >gi|291288614|ref|YP_003505430.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] gi|290885774|gb|ADD69474.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM 12809] Length = 121 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + +R++ G+ V +A +A + + E N +V D +M + Sbjct: 1 MKKILIVDDAITMRQLVAATLKASGYDVVDARDGVDALKKLDAEGRFNLIVSDVNMPNMD 60 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F+ V+ V L E G +AGA ++++KPF L ++++ Sbjct: 61 GITFLKEVKASSKHKFTPVIMLTTESQAGIKEEGRKAGAKAWIVKPFKPNDLLAVVKKII 120 >gi|110799947|ref|YP_694916.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168216455|ref|ZP_02642080.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182624595|ref|ZP_02952377.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674594|gb|ABG83581.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|177910199|gb|EDT72587.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182381505|gb|EDT78984.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 234 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + + + G+ VF+ ++ E E EKE + V+D M + Sbjct: 5 NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D + L + + I G GA+ ++ KPFN L + + Sbjct: 64 TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120 >gi|15604292|ref|NP_220808.1| PETR protein (ompR) [Rickettsia prowazekii str. Madrid E] gi|3860984|emb|CAA14884.1| PETR PROTEIN (ompR) [Rickettsia prowazekii] gi|292572041|gb|ADE29956.1| PetR [Rickettsia prowazekii Rp22] Length = 225 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61 +L+VD + + + N F+V A SV EA+ + + +++D + L+ Sbjct: 8 ILIVDDDSRILALLKQFLNKNNFLVSTANSVIEAKNLLKTSNY-DLIILDVMLPRITGLD 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F +R G ++ + L + + G AGA+ ++ KPF L + L Sbjct: 67 FATTIR--DAGNNIPIVMLTALSEANDRVKGLEAGASDYITKPFEPRELLLRINNLINNY 124 Query: 122 KSKDE 126 K E Sbjct: 125 NFKKE 129 >gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 233 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LLV+ ++ + R GF V A E + +++D + + Sbjct: 15 RILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETY-DLMLLDLGLPKRDGV 73 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + +R G + V + + G AGA+ +L+KPF+ + L MR L + Sbjct: 74 DVLRTLRSR--GHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRR 131 Query: 121 QKSKDE 126 Q + E Sbjct: 132 QSGRSE 137 >gi|310821327|ref|YP_003953685.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309394399|gb|ADO71858.1| Sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 478 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L++D +RKV + G+ V A + + K + +V D M G Sbjct: 1 MTKVLVLDDEANLRKVLAAMLRREGYDVTVAENGEQGLAEFHKNGA-DIVVTDLVMPKVG 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + V DV V + + + +AGA ++ KPF + L + + Sbjct: 60 GMEVLRSV--NAANPDVPVIIITAHGTVDSAVEAIKAGAFDYITKPFEQSELSAVIAKAS 117 Query: 119 QMQKSKDE 126 + +S Sbjct: 118 KAHESARR 125 >gi|322419915|ref|YP_004199138.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320126302|gb|ADW13862.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 232 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 1 MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59 M +LLV+ + ++ R GF V S A E E P V+D + + Sbjct: 1 MSRPILLVEDDLKLAEIARVYLEQAGFRVIHTESGVRALELARSEN-PVLAVLDLMLPDL 59 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A R++ TD+ V L + E+ +AG GA+ +++KPF+ L ++ + + Sbjct: 60 SG-EAVCRELTASTDIPVIMLTSKSSEEERLAGFALGADDYIVKPFSPRELVCRVQAVLK 118 Query: 120 M 120 Sbjct: 119 R 119 >gi|302875761|ref|YP_003844394.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689195|ref|ZP_07631641.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578618|gb|ADL52630.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R + + G+ A +A E EKE + ++ D M + Sbjct: 1 MFNVLVVEDDKDLRGLFCTILTKNGYKAISAEDGEKALEILEKE-YVDLVISDIMMPNMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ + + + F G G + +++KP + + + L + Sbjct: 60 GFELTKALREANFNLPILMITAKETFADKQKGFLVGTDDYMVKPVDVNEMVLRVGALLRR 119 Query: 121 QKSKDENQF 129 + +E + Sbjct: 120 AQIINERKQ 128 >gi|229593072|ref|YP_002875191.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas fluorescens SBW25] gi|229364938|emb|CAY53042.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas fluorescens SBW25] Length = 701 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+VD R L + V A S EA E K + + +++D M G+ F Sbjct: 14 LLVVDDYPENLVSMRALLQREDWQVVTAGSGVEALELLLKHDV-DLVLLDVKMPGMDGFE 72 Query: 64 --AHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + +L ++ G +GA +L KPF+ L+ ++ L + Sbjct: 73 VARLMRGNQRTRMTPIIFLSANAQSPAAVLEGYASGAIDYLFKPFDPHILKPKVQALLEH 132 Query: 121 QKSKDENQFLD 131 Q+++ Q L Sbjct: 133 QRNRRALQRLS 143 >gi|255656291|ref|ZP_05401700.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296450268|ref|ZP_06892029.1| response regulator VanR [Clostridium difficile NAP08] gi|296878683|ref|ZP_06902688.1| response regulator VanR [Clostridium difficile NAP07] gi|296261031|gb|EFH07865.1| response regulator VanR [Clostridium difficile NAP08] gi|296430490|gb|EFH16332.1| response regulator VanR [Clostridium difficile NAP07] Length = 238 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD + F V +A EA + E +++D M + Sbjct: 3 QNILVVDDDREIVDAIEFYLKPDNFNVLKAYDGLEALDILI-ENDIKLIIMDVMMPNLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ ++ + L + + + G GA+ ++ KPFN L ++ + Sbjct: 62 LKTTLKIREK-RNIPIILLSAKSEDMDKVIGLNMGADDYITKPFNPLELTARVKSQLRR 119 >gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 230 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++L+VD +R + + G+ VF+A EA + EKE + + +V+D M + Sbjct: 3 NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEV-HLMVLDVMMPDMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + ++ + L + + I G GA+ ++ KPFN L +R L + Sbjct: 62 FEVCSKVRERY-NIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRR 119 >gi|167552883|ref|ZP_02346634.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322559|gb|EDZ10398.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 225 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + + V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HAA 121 >gi|163759381|ref|ZP_02166467.1| osmolarity response regulator [Hoeflea phototrophica DFL-43] gi|162283785|gb|EDQ34070.1| osmolarity response regulator [Hoeflea phototrophica DFL-43] Length = 235 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +R + R ++ GF A A + + +V+D M G Sbjct: 7 RVIVVDDDPELRTLLRRFLSEHGFETR-AVDGGTALDRELSRSPADAIVLDLMMSGEDGL 65 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 R G + L D I G GA+ +L KPF L + + + + Sbjct: 66 AICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLRRTR 125 >gi|16764072|ref|NP_459687.1| DNA-binding transcriptional activator KdpE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992974|ref|ZP_02574069.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168240550|ref|ZP_02665482.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168820174|ref|ZP_02832174.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194447594|ref|YP_002044734.1| DNA-binding transcriptional activator KdpE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197263948|ref|ZP_03164022.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|238911647|ref|ZP_04655484.1| DNA-binding transcriptional activator KdpE [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16419210|gb|AAL19646.1| response regulator in two-component regulatory system with KdpD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194405898|gb|ACF66117.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197242203|gb|EDY24823.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328901|gb|EDZ15665.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205340109|gb|EDZ26873.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343178|gb|EDZ29942.1| KDP operon transcriptional regulatory protein KdpE [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261245967|emb|CBG23769.1| KDP operon transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992440|gb|ACY87325.1| DNA-binding transcriptional activator KdpE [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157295|emb|CBW16783.1| KDP operon transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911728|dbj|BAJ35702.1| DNA-binding transcriptional activator KdpE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084970|emb|CBY94759.1| Transcriptional regulatory protein yycF [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226279|gb|EFX51330.1| DNA-binding response regulator KdpE [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129013|gb|ADX16443.1| DNA-binding transcriptional activator KdpE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987639|gb|AEF06622.1| DNA-binding transcriptional activator KdpE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 225 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + + V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HAA 121 >gi|23014626|ref|ZP_00054433.1| COG2208: Serine phosphatase RsbU, regulator of sigma subunit [Magnetospirillum magnetotacticum MS-1] Length = 572 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV- 59 +L+V+ + R + + G+ A E + + +++D M + Sbjct: 12 TRILIVEDERLNRLLLETALDHGGYAWVSAEDGQAGWEILVADPAGFDLILLDWRMPRMS 71 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +E + ++ D+ V + E ++ G +AG + +L KP N + L + + Sbjct: 72 GMELLVKIKADERLRDLPVVMQTAYAEPEDVVKGIKAGVSYYLAKPLNLQVLMSVVAQAV 131 Query: 119 QMQKSKDENQ 128 + ++ Q Sbjct: 132 REYEALRRLQ 141 >gi|332995574|gb|AEF05629.1| two-component response regulator [Alteromonas sp. SN2] Length = 297 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 5/127 (3%) Query: 1 MDSL----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56 M+++ L+VD S + N GF A + +A EK + P+ +++D M Sbjct: 1 MNNISDVVLVVDDSPESLGMLNVALNTQGFTALVALNGIQALAIVEK-VKPDVVLLDAVM 59 Query: 57 EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 + F R + + + ++ + + ++ G AG ++ KP + + + ++ Sbjct: 60 PEMDGFETCKRLKKILPNTPIIFMTGLTEIDDVVKGFDAGGIDYVTKPISPDEVIARIKT 119 Query: 117 LPQMQKS 123 Q K Sbjct: 120 HIQTAKL 126 >gi|327438528|dbj|BAK14893.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +LLV+ + ++ + G+ V AT+ E E + +++D M + Sbjct: 3 QQILLVEDDREIARIIKDTLIKEGYAVTWATTGIEGLEDFSAGSY-DLILVDWMMPEMDG 61 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 I H+R +DV + + + + + G + A+ +L KPF+ E L+ +R + Sbjct: 62 LSMIEHIRLQ---SDVPIIMISAKSNESDKVTGLQD-ADDYLAKPFSLEELKARVRSQIR 117 Query: 120 M 120 Sbjct: 118 R 118 >gi|332655191|ref|ZP_08420932.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16] gi|332516051|gb|EGJ45660.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16] Length = 233 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 13/135 (9%) Query: 1 MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58 M+ +L+V+ VR + + A + A P+ +++D + Sbjct: 1 MNKPLILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVLEASSHN-PDIILLDLGLPD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + R +++ + + + I AGA+ +L KPF+ E L +R Sbjct: 60 IDGVEVIHRVRS-WSNLPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRV-- 116 Query: 119 QMQKSKDENQFLDAI 133 + L A+ Sbjct: 117 -------TQRRLAAL 124 >gi|298386943|ref|ZP_06996497.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298260093|gb|EFI02963.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1330 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLLV+ + + F V A + EA E + ++ D M + Sbjct: 1061 TLLLVEDNESMLTFILERLQ-ENFTVETAMNGIEALEILRSGH-IDLIISDIMMPVMDGY 1118 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 V+ + + + +L + D + I G + GA +++ KPF+ L+ + L Sbjct: 1119 QLCKEVKSDMELSHIPIIFLTAKNDIDSKINGLKYGAEAYVEKPFSFNYLKEQVLSLLDN 1178 Query: 121 QKSKDE 126 ++ + E Sbjct: 1179 RRRERE 1184 >gi|294805989|ref|ZP_06764856.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294446871|gb|EFG15471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 945 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L++D + +R R L + + V EA E K +P+ ++ D M G+ Sbjct: 699 SVLVIDDNADIRSYVRRLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGIDGI 756 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G GA+S++ KPF+ + L +R L Sbjct: 757 ECCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDS 816 Query: 121 QKSKDE 126 + + Sbjct: 817 HRRLKQ 822 >gi|251791589|ref|YP_003006310.1| DNA-binding transcriptional regulator CpxR [Dickeya zeae Ech1591] gi|247540210|gb|ACT08831.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 232 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M+ +LLVD + + R L GF V A +A + + L I + + Sbjct: 1 MNKILLVDDDRELTSLLRELLEMEGFNVVVAHDGEQALSVLDDSVDLLLLDIMMPKKNGI 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + VRQ V L + G GA+ +L KPFN L +R + + Sbjct: 61 DTLKEVRQR---YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 Query: 121 QKSKDENQFLDA 132 D+ Q +A Sbjct: 118 SNWTDQQQAGEA 129 >gi|237745639|ref|ZP_04576119.1| response regulator receiver:Transcriptional regulatory protein [Oxalobacter formigenes HOxBLS] gi|229376990|gb|EEO27081.1| response regulator receiver:Transcriptional regulatory protein [Oxalobacter formigenes HOxBLS] Length = 223 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 5/124 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+++ + +R G +A + + +++D + G+ Sbjct: 1 MAKILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQS-FDLIILDIMLPGMD 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R G + V +L + I G GA+ +L+KPF+ L + + Sbjct: 60 GLDLCRELRAR--GNETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAIL 117 Query: 119 QMQK 122 + K Sbjct: 118 RRVK 121 >gi|160938781|ref|ZP_02086133.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC BAA-613] gi|158438480|gb|EDP16239.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC BAA-613] Length = 224 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 52/130 (40%), Gaps = 5/130 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + R++ + + G+ A EA + + + + +++D M G+ Sbjct: 1 MFQILVAEDDKNTRRLMEAVLKEHGYHPILACDGLEALKLLDTHHV-DLVILDIMMPGMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R + + + + E G G + ++ KP + E + +R L Sbjct: 60 GYEFTRQLRATDYT--LPILMVTAKQLPEDKRKGFIVGTDDYMTKPVDEEEMILRIRALL 117 Query: 119 QMQKSKDENQ 128 + + +E + Sbjct: 118 RRAQIVNERR 127 >gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1287 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 3/117 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGVLE 61 +LLV+ + + R + L G + A + CEA E P + +++D M G+ Sbjct: 939 RILLVEDNEMNRTLAVELLRRRGAQIDSAVNGCEALARILHEAAPYDIVLMDLQMPGMDG 998 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116 +R + + + + E+ G N +L KP N + +RE Sbjct: 999 YEATRKIRADLRFSALPIIAVTAHAMVEERDRCREVGMNGYLTKPLNVPEMINLIRE 1055 >gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 224 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + G+ V + + F + + L++D + G+ + Sbjct: 2 RILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGL-FVAQSSEFDLLILDVMLPGIDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + +R+ + V V +L E + G GA+ +L+KPF+ L +R L + Sbjct: 61 -SFIRRFRERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTP 119 Query: 123 SKDEN 127 + ++ Sbjct: 120 MRQQD 124 >gi|116074985|ref|ZP_01472246.1| two-component response regulator [Synechococcus sp. RS9916] gi|116068207|gb|EAU73960.1| two-component response regulator [Synechococcus sp. RS9916] Length = 236 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 + +VD +R++ D G+ V + V + E + P+ +V+D M G Sbjct: 2 IWVVDDDPDLRQMVGTYLIDQGYDVRCLSDVKQFEARLEFQ-RPDLVVLDLMMPGDDGLT 60 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 A R G D+ V L + I G GA+ +L KPF L + + + + S Sbjct: 61 ALRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLGKPFLPRELSARIDAVLRRRSS 120 >gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] Length = 1235 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 3/119 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD S + R+V D G V A + +A + + + +++D M + Sbjct: 879 KKVLIVDDSILNREVASEFLLDVGIQVSTANNGQQALDMI-NQYHYDLVLMDVQMPVMDG 937 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R+ PL + + + + AG N L KP + + L + Sbjct: 938 LTATKQLRKNPLHKQLPIIAMTAHASADDYRRSLDAGMNDHLNKPIDHQLLYLTVTRWI 996 Score = 74.8 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 7/113 (6%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58 L+VD + + R+V + G V + E K+ + + +D ++ G Sbjct: 728 RALVVDDNAMAREVLADILTSLGLEVTTVADGYAGIDELEKACSKQTPYDVVFLDWNIPG 787 Query: 59 VLEFI---AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108 + R + + + + + + KP + Sbjct: 788 INGVETASKIERNVHITKPAAMLMVTAYDVDKFESDAHNVNIKKIISKPVDAS 840 >gi|226945001|ref|YP_002800074.1| Response regulator [Azotobacter vinelandii DJ] gi|226719928|gb|ACO79099.1| Response regulator [Azotobacter vinelandii DJ] Length = 310 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 4/132 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++L+VD + + V A+ A E LP+ +++D M G Sbjct: 15 QTVLIVDDLPVNLAFVAGVLEAE-CEVIAASDGTSALRLA-AEALPDLILLDVRMPGIGG 72 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E ++ L + V +L D + G GA +++KPFN LR +R + Sbjct: 73 FEVCRRLKASALTAPIPVIFLTSLSDPDDEAEGLEIGAIDYIVKPFNAPVLRARVRNHLR 132 Query: 120 MQKSKDENQFLD 131 + + + + + Sbjct: 133 LARQHELLERMA 144 >gi|313675771|ref|YP_004053767.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312942469|gb|ADR21659.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 227 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 4/126 (3%) Query: 1 MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57 M LLL + + + + GF V A C + + L++D M Sbjct: 1 MKKEYQLLLAEDEPSLGLILKESLESRGFKVDHCEDGEAAW-KCYQAKEYDLLILDVMMP 59 Query: 58 GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + F + + + +L + ++ G G N ++ KPF+ E L ++ L Sbjct: 60 KLDGFSLAQKVRKADGYIPIIFLTAKSTTNDVVEGFEKGGNDYIKKPFSMEELIVRVKAL 119 Query: 118 PQMQKS 123 + + + Sbjct: 120 LERKSN 125 >gi|298290157|ref|YP_003692096.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296926668|gb|ADH87477.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 239 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LLV+ +R + G+ V S + +P+ +++D + G Sbjct: 5 RVLLVEDDRDIRSLLVDFLGGEGYDVEAVGSGAL-MDRALMRGMPDLVILDIMLPGEDGL 63 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R V + L + D I G GA+ +L KPFN L +R L + Sbjct: 64 SICRRLRTKSR---VPILMLTAKHDDIDRIVGLEIGADDYLGKPFNPRELLARIRALLRR 120 >gi|288925422|ref|ZP_06419356.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] gi|288337893|gb|EFC76245.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] Length = 948 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+V+ S +V + + +F A E +L+P+ ++ D M + Sbjct: 679 TRVLIVEDSAMVAEYIGQQLGGK-YRLFYAADGESGWEKAL-QLVPDIIITDVMMPRLDG 736 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ L V V + +V E + G AGA+++L KPF+ + L + L + Sbjct: 737 CLLCRRIRRSDLLGHVPVVMVTAKVTHEDKMQGLEAGADAYLEKPFHGDELNRRVERLLE 796 Query: 120 MQKSKDENQFLDAI 133 Q+ + + L + Sbjct: 797 QQQLMRK-KLLAEL 809 >gi|218514071|ref|ZP_03510911.1| two-component response regulator protein [Rhizobium etli 8C-3] Length = 138 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+++ + + + G++V +A E F + +++D + + Sbjct: 2 RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + G V V L + +AG AGA+ ++ KPF+ E + +R L + Sbjct: 61 TELEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118 >gi|254418366|ref|ZP_05032090.1| Sigma-54 interaction domain family [Brevundimonas sp. BAL3] gi|196184543|gb|EDX79519.1| Sigma-54 interaction domain family [Brevundimonas sp. BAL3] Length = 482 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 49/129 (37%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD R++ + + G+ V A EA + + + L++D M + Sbjct: 3 KTVLVVDDDPTQRRLLQAVLERDGYAVVHAAGGGEAIDRMLRGGGADMLLLDMVMPEMSG 62 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 G V L + ++ +AGA F +KP E L +R +M Sbjct: 63 LECLAELRSAGVTTPVIVLTANGGIDTVVKAMQAGAQDFFVKPVGPERLLVGVRNALKMT 122 Query: 122 KSKDENQFL 130 + E L Sbjct: 123 QLTAEVGRL 131 >gi|197295084|ref|YP_002153625.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944563|emb|CAR57167.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 277 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+VD ++ + + A +A + + P+ +++D M + F Sbjct: 22 ILIVDDRPNDLRLLTEILRAAQCRISVAFDGLQAYHRAQA-IAPDLILMDVRMPRMDGFA 80 Query: 64 --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + P + V L D E IAG GA +++KPF + +R + Sbjct: 81 ASRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGALDYIVKPFEPAEVIARIRNHLKRG 140 Query: 122 KSKD 125 + Sbjct: 141 RRSQ 144 >gi|78060490|ref|YP_367065.1| two component AraC family transcriptional regulator [Burkholderia sp. 383] gi|77965040|gb|ABB06421.1| two component transcriptional regulator, AraC family [Burkholderia sp. 383] Length = 278 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD ++ + + A +A + + P+ +++D M + F Sbjct: 22 ILVVDDRPNDLRLLTEILRAARCRISVAFDGLQAYHRAQA-IAPDLILMDVRMPRMDGFA 80 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + P + V L D E IAG GA +++KPF + +R + Sbjct: 81 ACRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGAIDYIIKPFEPTEVLARIRNHLKRA 140 Query: 122 KSKD 125 + Sbjct: 141 RRSQ 144 >gi|325261323|ref|ZP_08128061.1| DNA-binding response regulator KdpE [Clostridium sp. D5] gi|324032777|gb|EGB94054.1| DNA-binding response regulator KdpE [Clostridium sp. D5] Length = 244 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+++ + + + V A + EA + P+ +++D + + Sbjct: 6 TVLIIEDEKNILTFVSKVLKKHEYKVLCADTGKEALSLIGSQC-PDIILLDLGLPDIDG- 63 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R++ + + + ++ +A GA+ ++ KPF L +R + Sbjct: 64 SSIIREVRAWSSTPIIVISARSAEKEKVAALDLGADDYITKPFGTSELLARIRTSLR 120 >gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5] gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5] Length = 230 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +LLV+ H + ++ H GF + A E ++ + +++D + Sbjct: 1 MQRILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSY-DLVLLDIMLPKLN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++F+ +R+ +++ V + + G GA+ ++ KPF+ L ++ Sbjct: 60 GMDFLKIIREK---SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAI 116 Query: 119 QMQKSKDENQF 129 + + Sbjct: 117 RRATQYSAEEL 127 >gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+++ + + G+ V + E E E + ++++ + + Sbjct: 3 KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLELMLPEMDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 F R++ ++ + ++AG GA+ +++KPF E L +R + + Q Sbjct: 62 FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120 Query: 122 KSKDENQ 128 + E + Sbjct: 121 DIESEKK 127 >gi|229824657|ref|ZP_04450726.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271] gi|229786028|gb|EEP22142.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271] Length = 232 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEGVL 60 +L+ D + ++ ++ G+ V +A + +A + + + +++D M V Sbjct: 2 RILVADDDREIVELLNIYLHNEGYDVIKAYNGHQALSYIKNDVDHEIGLIILDIMMPKVD 61 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + + V L + + I G +GA+ ++ KPFN + ++ + + Sbjct: 62 GMQVLDKLRAANYETPVLMLSAKSSDQDKIQGLTSGADDYVTKPFNPLEIIARVKSILRR 121 Query: 121 QKSKDEN 127 Q + + Sbjct: 122 QSTYQKE 128 >gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 231 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L++D + ++ + G+ VF+A + + +E + +V+D M G+ Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEK-IHVVVLDVMMPGID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F ++ ++ + L + I G GA+ +++KPFN L ++ + Sbjct: 60 GFQVCMKIRKDY-NIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRR 118 >gi|17231588|ref|NP_488136.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133231|dbj|BAB75795.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 356 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 3/130 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 S+L++D V L + + + A+ +A P+ +++D M + Sbjct: 6 SILVIDDEPDNFDVVETLLDGENYQLHYASGGQQAIARL-SSFQPDVILLDVMMPHLDGI 64 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E ++ P V + + E + AGA+ F+ KP N LR + + ++ Sbjct: 65 EVCRRIKADPQWQAVPIIIVTALTAKEDLAHCLNAGADDFISKPLNSVELRARVNSMLRI 124 Query: 121 QKSKDENQFL 130 ++ D Q L Sbjct: 125 KQQHDNLQGL 134 >gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 225 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +LLV+ +RK+ V EA EA E+E + +++D + Sbjct: 5 RILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQY-DLIIVDIMLPEYDGW 63 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R+ ++V + L + + G G + ++ KPF+ + L ++ L + Sbjct: 64 TICKRIREK---SNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKR 120 Query: 121 QKSKDENQFL 130 + + L Sbjct: 121 SNRQLSTETL 130 >gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 237 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L V+ ++R+ + GF V + E P+ ++D + G+ Sbjct: 12 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVA-APDIALLDVMVPGMDGV 70 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R + V V L D ++ G AGA+ ++ KPF+ L +R + + Sbjct: 71 SLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127 >gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 223 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62 L+VD + ++ + GF A + P+ +++D + G E Sbjct: 2 LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIF-RSTSPDLVLLDVMLPGKDGTEV 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R V V L + D ++ G +GA+ ++ KPF + L +R + Sbjct: 61 CRQIRAESG---VPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRRTD 117 Query: 123 SKDENQF 129 + Sbjct: 118 EPAPERL 124 >gi|153814038|ref|ZP_01966706.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756] gi|317502379|ref|ZP_07960544.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087969|ref|ZP_08336892.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848434|gb|EDK25352.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756] gi|316896189|gb|EFV18295.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409280|gb|EGG88729.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium 3_1_46FAA] Length = 224 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LLL + + K + + V A ++ E + + +V+D M V Sbjct: 2 RLLLAEDERALSKALTAILERNNYSVDAVYDGQSALDYLEADNY-DGVVLDIMMPKVDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G + + L + + + + G AGAN +L KPF+ + L +R + + Q Sbjct: 61 TVLRKVRERGNLIPILLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAITRAQT 120 Query: 123 SKD 125 ++ Sbjct: 121 AQA 123 >gi|109897915|ref|YP_661170.1| response regulator receiver protein [Pseudoalteromonas atlantica T6c] gi|109700196|gb|ABG40116.1| response regulator receiver protein [Pseudoalteromonas atlantica T6c] Length = 548 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 60/135 (44%), Gaps = 8/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + R + H+ G+ +EA S EA ++ + P +++D M+ + Sbjct: 2 RILIVDDDSLNRFLLLHMLEQKGYVDCYEAESGHEAVSLAKR-INPELVLLDVMMDDMNG 60 Query: 62 FIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +++ + + ++ D E ++ G + F+ KPFN+ L + + Sbjct: 61 YEVAPILKEQAGDIYLPIIFITALDDEESLVRCLEVGGDDFVAKPFNKTILAAKISAHAR 120 Query: 120 MQKSK----DENQFL 130 ++ ++NQ L Sbjct: 121 TRELSKKSYEQNQQL 135 >gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 224 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+++ + + L + V A EA ++ + ++ D M Sbjct: 1 MK-VLVIEDEVDLNRSIVKLLKTQQYSVDAAYDGQEALDYIRVSQY-DVIISDIMMPQLD 58 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 L ++++R + V L + E + G AGA+ +L+KPF + L +R + Sbjct: 59 GLGVLSYLRNHQI--KTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVML 116 Query: 119 QMQKSKD 125 + ++ Sbjct: 117 RRNNREN 123 >gi|312959727|ref|ZP_07774244.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311286444|gb|EFQ65008.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 234 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D +RK R G+ V EA + E P+ LV+D + + Sbjct: 9 TILVIDDEPQIRKFLRISLASQGYKVIEAGTGNEGLAQAALNK-PDLLVLDLGLPDMDG- 66 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R+ + V V L + + + GAN ++ KPF + +R L + Sbjct: 67 QQVLREFREWSTVPVLVLSVRASEGQKVEALDGGANDYVTKPFGIQEFLARVRALLRQAP 126 Query: 123 SKDENQ 128 + + + Sbjct: 127 AGEAQE 132 >gi|302342973|ref|YP_003807502.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301639586|gb|ADK84908.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfarculus baarsii DSM 2075] Length = 456 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD R + R D G+ V +A A E E + +++D+ M + Sbjct: 6 QTVLVVDDERGHRLMLRAHLEDAGYRVIDAADGEAALVQLESEPV-ELVLMDQVMPRMDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 A R ++ V + + + + GA+ +L KP + E + + + Sbjct: 65 LSALKRVKAQRPELPVLMMTAFGSIDNAVTALKEGADDYLTKPLDVEEVLIKVGRRLEQA 124 Query: 122 KSKDENQ 128 + + + Sbjct: 125 RLARQVE 131 >gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 1/120 (0%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + R G+ V A + +A + + +V+D + G+ Sbjct: 1 MVRILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPY-AAIVLDIMLPGLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + R G + L + + I GA+ FL KPF+ L +R L + Sbjct: 60 GYRVCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRR 119 >gi|256830477|ref|YP_003159205.1| Fis family two component sigma5-4 specific transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579653|gb|ACU90789.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfomicrobium baculatum DSM 4028] Length = 454 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 1/129 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D R + R + D GF V EA + + + + +++D M G+ Sbjct: 6 TVLVIDDEPAHRLMVRVVLGDAGFKVLEADNGSSGLTTLRAKPV-DVVLLDMRMPGMSGL 64 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 + G V L + + + GA +L KP + + L +++ + + Sbjct: 65 DVLQKMHEEGIATPVIMLTAFGNVSSAVESMKIGAWDYLTKPTDNDELLAVVKKAAEHVR 124 Query: 123 SKDENQFLD 131 EN+ L Sbjct: 125 LTRENRDLK 133 >gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] Length = 227 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 2/130 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ R + G++V + E E + LV+D + G + Sbjct: 2 RILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEY-DLLVLDVMLPGQDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 ++ + V +L D + G GA+ +L KPF+ L ++ + + + Sbjct: 61 T-LLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119 Query: 123 SKDENQFLDA 132 +D N A Sbjct: 120 PRDSNTLRAA 129 >gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 226 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ V +A + E E+ + +++D + + Sbjct: 1 MIKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEA-DLIILDVMLPEIN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ ++V + L ++G AGA+ ++ KPF E L +R + Sbjct: 60 GL-EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|90019939|ref|YP_525766.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89949539|gb|ABD79554.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 236 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 ++LLV+ + + + + V EA + P+ +++D + G Sbjct: 8 TTILLVEDDASLAQWIADYLTNNNYHVTTVMRGDEAVKVILTTK-PDLVLLDIMLPGKDG 66 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 E VR + + D + G GAN ++ KP L ++ L + Sbjct: 67 FEVCKEVRASYPN---PILMMTARDDEIDEVLGLEIGANDYITKPVRPRALVARIKSLLK 123 Query: 120 MQKSKDE 126 + D+ Sbjct: 124 NTAAADK 130 >gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 232 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 4 NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQIAILDIMMPQMDG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ ++ + Sbjct: 63 IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119 Query: 120 MQKSKDEN 127 ++N Sbjct: 120 RYTYFNQN 127 >gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator [Dechloromonas aromatica RCB] gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 225 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 1/130 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ R + GF+V A + E + V+D + G+ + Sbjct: 2 KILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAY-DLAVLDVMLPGIDGW 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G D+ V +L D E + G GA+ +L+KPF L +R L + Sbjct: 61 QVLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120 Query: 123 SKDENQFLDA 132 E+ L+A Sbjct: 121 KAKESDLLNA 130 >gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536] gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str. 8401] gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972] gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA] gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101] gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605] gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli CFT073] gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli 536] gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5 str. 8401] gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA] gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972] gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator, winged helix family precursor [Shigella flexneri 2002017] gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101] gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972] gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1 str. NRG 857C] gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3] gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1] gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3] gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263] gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2] gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1] gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605] Length = 260 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LL++ + ++ ++ G+++ + + K+ +++D + G+ Sbjct: 38 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + ++ + V L + + G +GAN +L+KPF+ L +R + Sbjct: 96 GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 Query: 121 QKSKD 125 + + Sbjct: 155 HHALN 159 >gi|118579149|ref|YP_900399.1| two component sigma54 specific Fis family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501859|gb|ABK98341.1| two component, sigma54 specific, transcriptional regulator, Fis family [Pelobacter propionicus DSM 2379] Length = 456 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 1/129 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + +R + D GF+V A S EA E E +P+ +++D M G+ Sbjct: 3 KLILVVDDENDIRTSLTGILEDEGFLVSCAASGVEALENVCHE-IPDIVLLDIWMPGLDG 61 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + L + V + E + + GA F+ KP + + + + +M Sbjct: 62 LETLEKLKQLFPHLTVIMISGHGTIETAVRATKLGAFDFIEKPLSLDKVLITVNNALRMG 121 Query: 122 KSKDENQFL 130 + + EN+ L Sbjct: 122 ELRVENEEL 130 >gi|332715676|ref|YP_004443142.1| putative two-component response regulator protein [Agrobacterium sp. H13-3] gi|325062361|gb|ADY66051.1| probable two-component response regulator protein [Agrobacterium sp. H13-3] Length = 246 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 4/126 (3%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD +R++ G A + + +V+D M G Sbjct: 7 ILVVDDDREIRELVSSYLKKNGLRTSVAADGRQ-MRSFLDGNTVDLIVLDVMMPGDDGLV 65 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R V L D I G GA+ +L KPF L ++ + + Sbjct: 66 LCRELRA-GKHKTTPVLMLTARDDEMDRIIGLEMGADDYLSKPFAARELLARIKAILRRT 124 Query: 122 KSKDEN 127 + N Sbjct: 125 RMLPPN 130 >gi|300920765|ref|ZP_07137169.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 115-1] gi|300412266|gb|EFJ95576.1| KDP operon transcriptional regulatory protein KdpE [Escherichia coli MS 115-1] Length = 208 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+V+ +R+ R G V+EA ++ P+ +++D + Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 I +R + + V V L + IA AGA+ +L KPF L+ +R + Sbjct: 60 G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 Query: 121 QKS 123 + Sbjct: 119 HSA 121 >gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + D G+ V A E F + + +V+D + + Sbjct: 2 RLLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEG-HFLGETEPYDAIVLDIGLPKMDGL 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + V L + + G AGA+ ++ KPF+ E + +R L + Sbjct: 61 SVLEAWRREGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRRSA 120 Query: 123 SKDENQF 129 ++ Sbjct: 121 GHAASEL 127 >gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] Length = 228 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+V+ ++++ + + V A+ E + K+ + +++D M + F Sbjct: 13 ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQS-FDLILLDVMMPNLNGFE 71 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123 + + +++ + L + + + G G + ++ KPF+ L + + + Sbjct: 72 VA-KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130 Query: 124 KDENQFL 130 + L Sbjct: 131 QSTENHL 137 >gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] Length = 242 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +S+L+VD + + GF VF A + EA E ++D M + Sbjct: 14 NSILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 72 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R+ + + +L + + G GA+ +++KPF+ L ++ + Sbjct: 73 IELCRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLR 129 Query: 120 MQKSKDEN 127 ++N Sbjct: 130 RYTYFNQN 137 >gi|258406488|ref|YP_003199230.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfohalobium retbaense DSM 5692] gi|257798715|gb|ACV69652.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfohalobium retbaense DSM 5692] Length = 370 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 8/135 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+VD + + + + V AT A EF LP+ +++D M G+ F Sbjct: 8 TVLVVDDAEANVDILVDIL-GNDYDVAVATDGPSALEFAFAA-LPDLILLDIMMPGMDGF 65 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ D+ + ++ D I G + G FL KP ++ + ++ Sbjct: 66 EVCRQLKATEATKDIPIVFVTALGDPRSEIHGLKLGGVDFLSKPLTPAIVKARVHNHLEL 125 Query: 121 QKSK----DENQFLD 131 ++++ D+N+ L+ Sbjct: 126 KQARAALHDQNKRLE 140 >gi|224026196|ref|ZP_03644562.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM 18228] gi|224019432|gb|EEF77430.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM 18228] Length = 228 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+VD + ++ + G+ V A S EA + N L++D M + F Sbjct: 5 RILVVDDEEDLCEILKFNLEMEGYQVDTANSAEEALKL--DLPSYNLLLLDVMMGEISGF 62 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +++ + + ++ + I G GA+ ++ KPF+ + ++ + + Sbjct: 63 KMASMMKKNKDTAGIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 122 Query: 121 QKS--KDENQFLD 131 + E + L Sbjct: 123 TANVQTREQEQLQ 135 >gi|189463223|ref|ZP_03012008.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136] gi|189430202|gb|EDU99186.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136] Length = 225 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 2/129 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + +R++ H ++V +A A + E + + +++D + Sbjct: 1 MK-ILIVEDDNDLREITTHSLEKERYVVSQAPDYRTALQKIE-DYDYDCILLDIMLPDGN 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 LG V L + E + G GA+ +L KPF+ L ++ L + Sbjct: 59 GLDLLAELHALGKHTNVIILSAKASLEDKVNGLDLGADDYLPKPFHLAELHARIKSLLRR 118 Query: 121 QKSKDENQF 129 + + E + Sbjct: 119 KLREGERKL 127 >gi|146308781|ref|YP_001189246.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576982|gb|ABP86514.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 802 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ + I + V R + G+ V A + EA + E + + +++D M + F Sbjct: 672 TVLIVEDNAINQLVTRGMLLKLGYRVRTADNGAEALDLLRSETV-DAVLLDCQMPVMDGF 730 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111 +R +P +V V + AG + +L KP E LR Sbjct: 731 ATCRALRALPGCAEVPVLAITAHSHSGDRERCLAAGMSDYLAKPMKFEELR 781 >gi|126437092|ref|YP_001072783.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126236892|gb|ABO00293.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 251 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 L+VD + +V N F + +A ++ P+ +++D + G+ Sbjct: 19 RALVVDDEAALAEVVASYLNRDHFTTRIVDNGPDAV-AVARDFDPDVVILDLGLPGMDGL 77 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R +D +V L I G GA+ ++ KPF+ L +R + + Sbjct: 78 EVCRRLR---TFSDAYVVMLTARDTEMDTIVGLTVGADDYVTKPFSPRELVARIRAMLRR 134 Query: 121 QKSKDENQ 128 ++ E + Sbjct: 135 PRATPERE 142 >gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630] gi|254975883|ref|ZP_05272355.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093270|ref|ZP_05322748.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255101433|ref|ZP_05330410.1| two-component system response regulator [Clostridium difficile QCD-63q42] gi|255307306|ref|ZP_05351477.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|255315012|ref|ZP_05356595.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255517687|ref|ZP_05385363.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255650797|ref|ZP_05397699.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|260683880|ref|YP_003215165.1| two-component system response regulator [Clostridium difficile CD196] gi|260687540|ref|YP_003218674.1| two-component system response regulator [Clostridium difficile R20291] gi|306520698|ref|ZP_07407045.1| two-component system response regulator [Clostridium difficile QCD-32g58] gi|115251341|emb|CAJ69173.1| Two-component response regulator [Clostridium difficile] gi|260210043|emb|CBA64112.1| two-component system response regulator [Clostridium difficile CD196] gi|260213557|emb|CBE05314.1| two-component system response regulator [Clostridium difficile R20291] Length = 230 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+VD + GF +++A +A E E + +++D M + Sbjct: 1 MYNILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEII-TENDIHLILMDIMMPKLD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A V+ ++ + + + + I G GA+ ++ KPFN L ++ + Sbjct: 60 GIKATVKIREE-RNIPIILISAKSEDTDKIIGLNIGADDYITKPFNLLELIARVKSNLRR 118 >gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 238 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 +L+++ + + R G V T + +E + +++D + + + Sbjct: 12 ILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQ-VSEEQEVDLVILDLMLPDIDGMV 70 Query: 64 AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R + + + L + ++ + G + GA+ +++KPF+ + L + + + Sbjct: 71 VCRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRR 127 >gi|215445178|ref|ZP_03431930.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis T85] gi|289757111|ref|ZP_06516489.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294995216|ref|ZP_06800907.1| transcriptional regulator kdpE [Mycobacterium tuberculosis 210] gi|289712675|gb|EFD76687.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|326904745|gb|EGE51678.1| transcriptional regulator kdpE [Mycobacterium tuberculosis W-148] Length = 226 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 6/131 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59 M +L++D + + R G+ V A++ A E P+ +++D + + Sbjct: 1 MTLVLVIDDEPQILRALRINLTVRGYQVITASTGAGAL-RAAAEHPPDVVILDLGLPDMS 59 Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ + +R V L D + AGA+ ++ KPF + +R Sbjct: 60 SIDVLGGLR---GWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAV 116 Query: 119 QMQKSKDENQF 129 + + E + Sbjct: 117 RRNTAAAELEQ 127 >gi|163748821|ref|ZP_02156073.1| CheY-like receiver protein [Shewanella benthica KT99] gi|161331595|gb|EDQ02400.1| CheY-like receiver protein [Shewanella benthica KT99] Length = 120 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L VD S +R++ GF V EA + EA + ++ + ++ D +M + Sbjct: 1 MKQILAVDDSASMRQMVCFTLKTAGFDVTEACNGDEALKAAQQSEY-DLVISDVNMPIMD 59 Query: 61 EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ +P + L E EK G AGA +++KPFN + L +R++ Sbjct: 60 GLTLIRNLLTLPNYKFTPLLMLTTESGTEKKQEGRSAGATGWIVKPFNPDQLLATVRKVL 119 >gi|158522821|ref|YP_001530691.1| multi-sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] gi|158511647|gb|ABW68614.1| multi-sensor signal transduction histidine kinase [Desulfococcus oleovorans Hxd3] Length = 498 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD +R+ + V A + EA E +E + L++D M G+ Sbjct: 7 MK-ILVVDDEKDIREGCVRVLRRLDCEVSMAANGHEALELLGRE-FFDVLLLDLKMPGID 64 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + ++Q D+ V + E I + GA F+ KPF+ LR + Sbjct: 65 GMDVLREIQQQE--RDILVIVITGFATVETAIEAMKQGAYDFIPKPFDPAQLRIVVERAL 122 Query: 119 QMQKSKDENQFLD 131 + E + L Sbjct: 123 DKIRLIHETEQLA 135 >gi|57864907|gb|AAW57081.1| 2-component response regulator [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 224 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+ D VR + + + V A + EA P+ L+ D M Sbjct: 5 ILIADDDPGVRLAVKDYLELYSYSVITAKNGQEALSLLVA-YRPHLLISDIKMPQKDGYT 63 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + ++RQ+P + V +L + I G G + +L KPF E L+ +R L + Sbjct: 64 LVRYIRQLPEFRLLPVIFLTERDSTGERIQGYEVGCDVYLPKPFEMEELKAVVRNLLERT 123 Query: 122 KS 123 + Sbjct: 124 QM 125 >gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1917 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + V A + E E + +++D M + Sbjct: 1797 KKVLIVDDDVRNIFALTSMLERYQMQVIYAENGREGISLLENTQDIDVVLMDVMMPEMDG 1856 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R+ + + L + AGA+ ++ KP + E L +R Sbjct: 1857 YETMQLIRKKEQFRALPIIALTAKAMQGDRDQCIAAGASDYIAKPVDTEQLLSLLRVWLY 1916 Query: 120 M 120 Sbjct: 1917 R 1917 Score = 97.2 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 9/123 (7%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61 LL+++ ++ + GF V A + + K+ P +++D + + Sbjct: 1531 LLIIEDDVNFARILVDMARQHGFQVLSAQTGTAGLKLA-KDFQPMAILLDIRLPEMDGWT 1589 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118 + ++ P + V+ + + E G + GA ++L KP E + +R Sbjct: 1590 VLDRLKHDPTTRHIPVHIMTV---EEGRQRGLQLGAIAYLQKPVTSEAISEALDKIRGFV 1646 Query: 119 QMQ 121 + + Sbjct: 1647 ERR 1649 Score = 70.6 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +LL+V+ + R+ L + + A E + + LV+D + + Sbjct: 1651 KNLLVVEDDELQRQSIVELIGNSDVATVAVGTGAAALEAIRTQ-QFDCLVLDLGLPDMTG 1709 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + +++ G + + + R A + ++K + E L Sbjct: 1710 FELMEQIKREANGATLPIIVYTGREISKTQETELRRIAETIIVKDVRSPERLLD 1763 >gi|109899128|ref|YP_662383.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109701409|gb|ABG41329.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 720 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +L+V+ + I +V + + G+ + AT +A + C E + +++D M + Sbjct: 604 KILIVEDNEINAEVVKVMLEGAGYQIVIATDGEKALQACIFEQY-DLILMDMHMPVMDGI 662 Query: 63 IAHVRQMPLGTDV-FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 A + + L E AG N F+ KP ++ L ++ + Sbjct: 663 TATQKLRREMNFTNPIIALSANAFVEDREHCIEAGMNDFISKPVEKQALLATIKRHIK 720 Score = 47.5 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 21/136 (15%) Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63 +VD R+ +H+ G + + + + L++D SM + + Sbjct: 474 IVDDLQTSREYIQHIVTSLGCLPNTFDNAEDFL--ASDISQFDVLLLDLSMPEITGVDVV 531 Query: 64 AHVRQMPLGTDVFVYYLLM---EVDFEKMIAGARAGANSFL----LKPFNRETL---RFA 113 +R L + + +D + + KP R+ L Sbjct: 532 ETLRDRQLSKLPHIIIVSAVIEHLDCSTSVR-------DLIWRTHAKPIVRQELESDLKK 584 Query: 114 MRELPQMQKSKDENQF 129 ++ Q + E + Sbjct: 585 LQNFYSRQHTSIEEEQ 600 >gi|124268769|ref|YP_001022773.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261544|gb|ABM96538.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 306 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD + + D G+ V A A + + ++P+ +++D M G+ F Sbjct: 17 VLVVDDAPSSLGMLCDTLEDAGYTVLIARDGEAALQRL-RLVVPDVILLDAMMPGMSGFE 75 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 ++ P T + V ++ + ++ G G +++KP + + + Sbjct: 76 TCRVLKADPALTHIPVIFMTGLSETAHVVEGFACGGVDYVVKPIRAPEVLARLHTHARNA 135 Query: 122 KSKDENQ 128 + + Sbjct: 136 RITRLAR 142 >gi|298491318|ref|YP_003721495.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233236|gb|ADI64372.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 236 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD + + G++V A + + L++D + G L Sbjct: 8 RILLVDDEAELTDPLSRVLIREGYIVDAAYHGING-SQLAQIGTYDLLILDWMLPGKTGL 66 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +R+ V +L + + + G AGA+ +L+KPF L +R L + Sbjct: 67 EICQELRRQAKT--TPVLFLTAKDTLDDRVQGLDAGADDYLIKPFELRELLARVRALLRR 124 >gi|270263749|ref|ZP_06192018.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042633|gb|EFA15728.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 229 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 2/129 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+V+ +R+ R G VFE+ ++ P+ +++D + Sbjct: 6 TNILIVEDEKEIRRFVRIALESEGLRVFESETLQRGLIEAGT-RKPDLIILDLGLPDGDG 64 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +++R + + + V L E IA AGA+ +L KPF L +R + Sbjct: 65 L-SYIRDLRQWSAIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRRH 123 Query: 122 KSKDENQFL 130 + L Sbjct: 124 SGSQQESPL 132 >gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 219 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 5/121 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 LL+V+ + + G+ V A E E + +V+D + G+ Sbjct: 2 RLLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRA-TEGGYDLIVLDIMLPGMNGY 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 A +R G D + L + G GA+ +L KPF+ LR ++ L + Sbjct: 61 RVCAALRA--AGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRR 118 Query: 121 Q 121 + Sbjct: 119 R 119 >gi|150375913|ref|YP_001312509.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030460|gb|ABR62576.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 121 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +LLV+ + + R + + GF V A + E E P+ +++D S+ + Sbjct: 1 MTRILLVEDNEMNRDMLSRRLSRRGFEVLIAENGQAGVELAASEK-PDLILMDMSLPVMD 59 Query: 61 E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 ++ PL + + V L +AG + + KP + L + +L Sbjct: 60 GWEATRRIKADPLTSAIPVIALTAHAMASDREMALKAGCDDYDSKPVDLPQLVRKIEQLL 119 >gi|94263432|ref|ZP_01287245.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94271768|ref|ZP_01292012.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93450346|gb|EAT01573.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456162|gb|EAT06301.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 461 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M +L+VD +R+ + L + G V A A +E + L+ D M Sbjct: 1 MGRILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQED-FDLLISDIRMPPPN 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 LE + RQ+ ++ V + + + + GA +L KPF + ++ + Sbjct: 60 GLELLDQARQLQ--PELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTAL 117 Query: 119 QMQKSKDE 126 ++ E Sbjct: 118 SSRRQLPE 125 >gi|86606795|ref|YP_475558.1| sensor histindine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86555337|gb|ABD00295.1| sensor histindine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 942 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +LL+V+ S VR+ GF V +A EA E ++ + ++ D M Sbjct: 810 TLLVVEDSVNVRRFLAMTLERAGFRVEQARDGQEALEHLQRGIPIRAVITDIEMPRLDGF 869 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +A +R PL + V L + R GA+++L KPF + L +R+L Q Sbjct: 870 GLLAQIRAHPLYDQLPVVMLTSRSGEKHRQLAQRLGASAYLSKPFQEQELIQKLRQLLQ 928 >gi|227543768|ref|ZP_03973817.1| two component response regulator [Lactobacillus reuteri CF48-3A] gi|300908835|ref|ZP_07126298.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] gi|77745289|gb|ABB02545.1| response regulator [Lactobacillus reuteri] gi|227186267|gb|EEI66338.1| two component response regulator [Lactobacillus reuteri CF48-3A] gi|300894242|gb|EFK87600.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] Length = 221 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60 +L+ + + V G+ V A + EA E KE + +++D M L Sbjct: 2 RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQA-KENAYDVIILDIMMPVKSGL 60 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R G ++ L + + + G AGA+ +L KPF+ + L +R + Sbjct: 61 EALKEIRA--TGNRTYIMMLTAMGEEDDKVTGLDAGADDYLTKPFSLKELLARLRSRQRR 118 >gi|150017040|ref|YP_001309294.1| signal transduction histidine kinase, LytS [Clostridium beijerinckii NCIMB 8052] gi|149903505|gb|ABR34338.1| signal transduction histidine kinase, LytS [Clostridium beijerinckii NCIMB 8052] Length = 1032 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 +LLVD KV + +F D + A + A E +K + +++D M G Sbjct: 704 KILLVDDDVCNIKVLQEIFYDSNYETLVAYNGVNALELVKKHKDISIVLLDVMMPGLSGY 763 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +R+ ++ + L + + + G AGAN FL KPFN L+ + L +M Sbjct: 764 DVCKRIRKEYKLFELPILLLTVRSTPDDIALGFEAGANDFLTKPFNFMELKARVTTLQKM 823 Query: 121 QKSKDENQFLDAI 133 + + E ++ + Sbjct: 824 RIAVKEALKMETV 836 >gi|329909927|ref|ZP_08275148.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] gi|327546366|gb|EGF31380.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] Length = 204 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62 +L+VD V ++ G++V AT A E + P+ +++D M G+ F Sbjct: 11 ILIVDDVPDNLAVLSDALDEAGYLVLVATDGAGALERLGY-VTPHLILLDAVMPGMDGFE 69 Query: 63 -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R +P + + V ++ + E ++ G G N +++KP + + + Sbjct: 70 TCRRIRALPGASHIPVIFMTGLTETEHVVRGFEVGGNDYVIKPLQPREVIARIVAQLR 127 >gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 229 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 2/126 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+V+ + + G+ V + EA E + E + +++D ++ G+ Sbjct: 1 MK-ILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPY-DLILLDLNLPGID 58 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ V L I G AGA+ +L+KPF L +R L + Sbjct: 59 GLELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRR 118 Query: 121 QKSKDE 126 + ++ E Sbjct: 119 EYTQGE 124 >gi|255523345|ref|ZP_05390315.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188278|ref|ZP_06856670.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255512999|gb|EET89269.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047404|gb|EFG86846.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 231 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+ + + ++ R F V E C KE + L++D + + Sbjct: 1 MKKILIAEDDLSIAELQRDYLELSEFEVKICMDGVETLN-CLKENEFDLLILDIMLPKID 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 F + +R + D+ + + + + I G GA+ ++ KPF+ L ++ + Sbjct: 60 GF-SILRSIQDTKDIPILIVSSKKEEIDKIKGFNLGADDYITKPFSPAELVARVKSHIKN 118 Query: 121 QK 122 + Sbjct: 119 YE 120 >gi|241664604|ref|YP_002982964.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|309780574|ref|ZP_07675321.1| KDP operon transcriptional regulatory protein KdpE [Ralstonia sp. 5_7_47FAA] gi|240866631|gb|ACS64292.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|308920729|gb|EFP66379.1| KDP operon transcriptional regulatory protein KdpE [Ralstonia sp. 5_7_47FAA] Length = 234 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L++D +R+ R + G V EA V P+ +++D + Sbjct: 11 TVLVIDDEPHIRRFVRAALEEEGCEVHEADRVERGLIEAGT-RQPDAVILDLGLPDGDGM 69 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 +R++ T+V V L VD I AGA+ +L KPF L +R L + Sbjct: 70 -QLIRELRTWTEVPVLVLSARVDERDKIEALDAGADDYLTKPFGVGELVARLRVLLRRHA 128 Query: 123 SKDEN 127 + E+ Sbjct: 129 KRGED 133 >gi|196229923|ref|ZP_03128787.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226249|gb|EDY20755.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1947 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +L+VD + + + AT+ +A E E + +++D M + Sbjct: 1827 RKVLIVDDDARNIFALSIVLENQEMNIISATNGRQAIELIENTPDLSMVLMDIMMPEMDG 1886 Query: 62 FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 + +R + + L + AGA+ ++ KP N + L +R Sbjct: 1887 YETMRRIRNNARFRSLPILALTAKAMKGDREKCLEAGASDYIAKPVNTDQLLSLLRVWLH 1946 Query: 120 M 120 Sbjct: 1947 R 1947 Score = 78.7 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63 LL+V+ +V L D GF A A ++ LP + +D + +L + Sbjct: 1561 LLIVEDDPHYARVLLGLARDKGFKGLVAMRGQHALTLA-RQFLPTAITLDIFLPDMLGWT 1619 Query: 64 AH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 ++ P + V + E+ G GA S+++KP E L A + Sbjct: 1620 VLNNLKLDPNTRHIPVQIIS---LDEERQHGLSHGAFSYMVKPATTEDLDVAFERI 1672 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 LL+V+ + + R+ L + + EA + + + V+D + + Sbjct: 1681 KRLLVVEDNDLERQSIVELLGHDDIEITTVGTGSEALQELLDKP-FDCGVLDLRLPDMSG 1739 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112 E + ++ DV + + + + + A S +LK + E L Sbjct: 1740 FELLDRIQAESNLRDVPIVVFTGKELSREEESHLKTVAKSIVLKDVRSPERLLD 1793 >gi|170727651|ref|YP_001761677.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella woodyi ATCC 51908] gi|169812998|gb|ACA87582.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella woodyi ATCC 51908] Length = 343 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 50/129 (38%), Gaps = 3/129 (2%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 ++L+VD + V + D + V A + A + P+ +++D M+G Sbjct: 10 TVLVVDDTPENIDVLAGVLRDL-YKVKVARNGEIALKITRSPSPPDLILLDVMMDGIDGY 68 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E +++ + + ++ ++ E + G GA ++ KP + + ++ + Sbjct: 69 EVCRQLKEDHSTRHIPIIFVTAKIAQEDEVKGFELGAVDYISKPISPAIVLSRVKTHLAL 128 Query: 121 QKSKDENQF 129 E Sbjct: 129 YNQNRELDR 137 >gi|70733064|ref|YP_262837.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68347363|gb|AAY94969.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas fluorescens Pf-5] Length = 707 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +LL+VD R L + V A S EA + + + +++D M G+ F Sbjct: 14 TLLIVDDYPENLLSMRALLQRQDWQVMTAASGVEALGLLLEHEV-DLVLLDVQMPGMDGF 72 Query: 63 I--AHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQ 119 +R + +L + + G +GA +L KPF+ + L+ ++ L + Sbjct: 73 EVARLMRGSQRTRLTPIIFLTANEQSQDAVIKGYASGAVDYLFKPFDPQILKPKVQALLE 132 Query: 120 MQKSKDENQFLD 131 Q+++ Q L Sbjct: 133 HQRNRRALQHLS 144 >gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 223 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 1/127 (0%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 LL+V+ + + D G++V A E F + +V+D + + Sbjct: 2 RLLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEG-HFLGDSEPYDAVVLDIGLPKMDGI 60 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 G + V L + + G AGA+ ++ KPF+ E + MR L + Sbjct: 61 SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALLRRST 120 Query: 123 SKDENQF 129 +++ Sbjct: 121 GHAQSEL 127 >gi|327470096|gb|EGF15560.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 237 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD + + + G+ V A E E K+ + + ++ D M + Sbjct: 8 KTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLELFRKKSV-DLIITDIMMPNMDG 66 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 + + D + + + I G GA+ F+ KPF+ L + + + Sbjct: 67 YDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 126 Query: 122 KSKDENQFLD 131 E + ++ Sbjct: 127 HRGGEIEQIE 136 >gi|323136078|ref|ZP_08071161.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322399169|gb|EFY01688.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 232 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++ LVD + G+ V T +A + P+ + D M + Sbjct: 1 MPTIALVDDDRNILTSVSIALEGEGYRVQTYTDGAQALDGLRANP-PDLAIFDIKMPRMD 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 +R++ +D+ V +L + + + G + GA+ F+ KPF++ L ++ + + Sbjct: 60 GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILRR 118 Query: 121 QKSKD 125 K+ Sbjct: 119 ANPKE 123 >gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1187 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+ D G V AT EA + +++D M + Sbjct: 1065 KTVLIADDDVRNIFSMTKSLEKHGMKVISATDGKEALHQLDSHPETAIVLMDMMMPEMDG 1124 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + A +RQ P + V + + AGA+ ++ KP + + L +R Sbjct: 1125 YESTARIRQHPHFKHLPVIAVTAKAMLGDREKCIAAGASDYISKPVDIDQLTSLLRVWL 1183 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 6/116 (5%) Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61 +L+V+ K G+ A ++ P +++D + E Sbjct: 799 VLIVEDDTAFGKALLGFTRKRGYKGIVAVRGDHGIALA-QQYQPVAILLDIQLPVKDGWE 857 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++ + V+ + E GA F+ KP + ++ ++L Sbjct: 858 VMEELKSNSATRHIPVHIMS---SMEVKRESRMKGAVDFINKPIAMDQMKQMFQKL 910 Score = 54.0 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 6/95 (6%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59 +L+V+ + + + F A SV E+ + K + +++D + Sbjct: 919 KKVLIVEENARHAQALSYFLETFKVSSAIAGSVNESVDAL-KNKEVDCVIMDMGIPDKNA 977 Query: 60 LEFIAHVRQMPLGTDVFVYYLLME---VDFEKMIA 91 E + ++ P D+ + + E I Sbjct: 978 YEMLETIKHNPGLEDLPIIIFTGKHLSSGEESRIR 1012 >gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1131 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 2/119 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++LLVD L + V A+ EA + + + +++D M + Sbjct: 1011 KTVLLVDDDMRNVFSISTLLEENKLTVITASDGQEAIDTLISQSQIDLVLMDIMMPVMDG 1070 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 +R + + L + AGA+ ++ KP + L M Sbjct: 1071 YEATRKIRAENRFAKLPIIALTAKAMPGDREKCLEAGASDYITKPLDVNQLLSVMHTWM 1129 Score = 63.7 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 43/115 (37%), Gaps = 7/115 (6%) Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62 L+++ V + G+ A E + + P +++D + + Sbjct: 744 LIIEDDARFASVVQDFARTKGYKTLVALQGDEGLAYARR-YEPTAIILDLHLPALDGISV 802 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + ++ + + V+ + + + ++ GA ++L KP ++ L A + Sbjct: 803 LKLLKDDKKLSSIPVHVMSASDEQQLVLP----GALAYLQKPLTKQDLEDAFTRI 853 >gi|253687608|ref|YP_003016798.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754186|gb|ACT12262.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 226 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 2/125 (1%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 ++L+V+ +R+ R G VF+A ++ P+ +++D + Sbjct: 4 TILIVEDEKEIRRFVRQALEGEGCRVFDAETMQRGL-LEAATRKPDLIILDLGLPDGDG- 61 Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 I ++R + + + V L D + I AGA+ +L KPF L +R + Sbjct: 62 IDYIRDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRRHS 121 Query: 123 SKDEN 127 + Sbjct: 122 HTQQE 126 >gi|194367392|ref|YP_002030002.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194350196|gb|ACF53319.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 235 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 7/127 (5%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 +++VD +R G+ V A A + + P+ +++D M G Sbjct: 6 RVIVVDDDASIRDAIADCLLLHGYQVRVAA-GAMALDMLLQAERPDVIILDWMMPGEDGL 64 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + + L + G GA+ +L KPF+ L +R L + Sbjct: 65 SVCRRLQARA----IPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVRALLRR 120 Query: 121 QKSKDEN 127 Q Sbjct: 121 QDKLRTQ 127 >gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 245 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 6/123 (4%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59 +L+V+ + GF+V A A + E P+ L++D + G Sbjct: 19 RRVLVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEA-WQPDLLILDIMLPGFDG 77 Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 LE V+ V V L D M+ G GA+ ++ KPF+ L + L + Sbjct: 78 LEVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLR 134 Query: 120 MQK 122 + Sbjct: 135 RVE 137 >gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] Length = 223 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ + E +++ + L++D + + Sbjct: 2 RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIEGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + V +L + + G GA+ +L KPF+ L ++ L + Sbjct: 61 SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117 Query: 121 QKSKDENQF 129 Q+ EN+ Sbjct: 118 QQYLQENEL 126 >gi|319407929|emb|CBI81583.1| transcriptional regulator BatR [Bartonella schoenbuchensis R1] Length = 240 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LVD + G+ V T A + P+ + D M + Sbjct: 9 QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHP-PHLAIFDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L ++ + + Sbjct: 68 M-ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRS 126 Query: 122 KSKDE 126 ++++ Sbjct: 127 NARNQ 131 >gi|294643137|ref|ZP_06720968.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292641520|gb|EFF59707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 947 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62 S+L++D + +R R L + + V EA E K +P+ ++ D M G+ Sbjct: 701 SVLVIDDNADIRSYVRRLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGIDGI 758 Query: 63 --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 ++ + V L E+ I G GA+S++ KPF+ + L +R L Sbjct: 759 ECCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDS 818 Query: 121 QKSKDE 126 + + Sbjct: 819 HRRLKQ 824 >gi|229100480|ref|ZP_04231337.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|228682935|gb|EEL36956.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 231 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M ++L+++ +R GF V E + +A E E+ + + +++D + G+ Sbjct: 1 MTTILVLEDDITIRSFITLNMKRAGFNVLETDTGEKALELLEQHNV-DIVILDVMLPGID 59 Query: 61 EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 F +R+ D+ + L V + + G GA+ ++ KPF+ L ++ L Sbjct: 60 GFRVCKSIRKNNE--DIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLL 117 Query: 119 QM-QKSKDENQFL 130 + QK+K + + + Sbjct: 118 RRIQKNKKDLELI 130 >gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB307-0294] gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional regulator [Acinetobacter baumannii AB058] gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB307-0294] Length = 223 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61 +L+++ + + G+ + E +++ + L++D + + Sbjct: 2 RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIEGW 60 Query: 62 -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 + +RQ + + V +L + + G GA+ +L KPF+ L ++ L + Sbjct: 61 SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117 Query: 121 QKSKDENQF 129 Q+ EN+ Sbjct: 118 QQYLQENEL 126 >gi|171060214|ref|YP_001792563.1| response regulator receiver modulated diguanylate cyclase [Leptothrix cholodnii SP-6] gi|170777659|gb|ACB35798.1| response regulator receiver modulated diguanylate cyclase [Leptothrix cholodnii SP-6] Length = 322 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 4/129 (3%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 LL+VD I + +F VF ATS +A C P+ +++D M G+ Sbjct: 23 RRLLIVDDQPINIQALYQVF-AADHQVFMATSGPQALALCLS-KQPDLVLLDVMMPGMDG 80 Query: 62 F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119 F ++ P D+ V ++ D G GA F+ KP N +R +R Sbjct: 81 FEVCRRLKADPATADIPVIFVTAHSDEAAETLGLDVGAVDFISKPINPNIVRARVRTHVT 140 Query: 120 MQKSKDENQ 128 ++ D + Sbjct: 141 LKAQSDLLR 149 >gi|154502659|ref|ZP_02039719.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149] gi|153796542|gb|EDN78962.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149] Length = 246 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 5/125 (4%) Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60 LL+V+ + + + G+ V EA + E + + +V+D ++ G + Sbjct: 22 RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAE-MYDLIVLDLNLPGVDGM 80 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 E + +R+ + V L I G AGAN ++ KPF+ + L +R L + Sbjct: 81 EILRELRKEDE--ETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRR 138 Query: 121 QKSKD 125 + + Sbjct: 139 KFIQK 143 >gi|119488888|ref|ZP_01621850.1| adenylate cyclase [Lyngbya sp. PCC 8106] gi|119455049|gb|EAW36191.1| adenylate cyclase [Lyngbya sp. PCC 8106] Length = 657 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 3/118 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 S+L+VD + I + + G+ V A S A + P+ +++D M + Sbjct: 11 KSILVVDDTPINLTLLTRMLTTQGYEVRVAPSGVLALRSVQMSP-PDLILLDIMMPEMDG 69 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 F ++ ++ + +L D + G ++ KPF + + Sbjct: 70 YHFCRLLKDQAETREIPIIFLSALDDASDKVKAFEMGGVDYITKPFQLTEVLARIENH 127 >gi|121596078|ref|YP_987974.1| response regulator receiver protein [Acidovorax sp. JS42] gi|222112234|ref|YP_002554498.1| response regulator receiver protein [Acidovorax ebreus TPSY] gi|120608158|gb|ABM43898.1| response regulator receiver protein [Acidovorax sp. JS42] gi|221731678|gb|ACM34498.1| response regulator receiver protein [Acidovorax ebreus TPSY] Length = 120 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58 M S+L VD S +RK+ G+ V EA +A E E + ++ D++M Sbjct: 1 MQSILAVDDSPSMRKMVSFTLTGAGYHVVEAVDGQDALEKAETHD-IHLVLADQNMPRLD 59 Query: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 + +R+ P + + L E + AG AGA +L+KPF+ L ++++ Sbjct: 60 GIGLTRKLREHPRFKSIPILILTTESSDQMKQAGRSAGATGWLVKPFDPTRLIEVIQKVI 119 Query: 119 Q 119 + Sbjct: 120 R 120 >gi|71909509|ref|YP_287096.1| response regulator receiver [Dechloromonas aromatica RCB] gi|71849130|gb|AAZ48626.1| Response regulator receiver [Dechloromonas aromatica RCB] Length = 121 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 ++L+VD S R + G+ V A + E + P+ +++D M G+ Sbjct: 4 KNILVVDDSPTERFFTVDVLTKAGYQVSTAETGEEGIAKAKATK-PDLILMDVVMPGLNG 62 Query: 62 --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 + + + + + I G R GA +L+KP N E L + L Sbjct: 63 YQATRTLTRDEETKGIPIIVCTSKGQETDKIWGLRQGAIDYLVKPLNPEELLQRIAAL 120 >gi|323492751|ref|ZP_08097895.1| transcriptional regulatory protein CpxR [Vibrio brasiliensis LMG 20546] gi|323313126|gb|EGA66246.1| transcriptional regulatory protein CpxR [Vibrio brasiliensis LMG 20546] Length = 221 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60 M +L+VD + + + G++V A ++ EK+ + + +++D + + Sbjct: 1 MSRILVVDDDIELCHLLLDVLEAEGYLVECVHCGESALKYLEKKTV-DLVLLDVMLPKLN 59 Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120 R++ + L D E ++ G ++GA+ ++ KPF L ++ + + Sbjct: 60 GM-QVARKICQRFATPILMLTALNDEESILDGYQSGADQYIAKPFKVPELLTRIKAIFRR 118 Query: 121 QKSKDENQ 128 + + Q Sbjct: 119 VGLEKQRQ 126 >gi|319404967|emb|CBI78569.1| transcriptional regulator BatR [Bartonella sp. AR 15-3] Length = 240 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%) Query: 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61 +++LVD + G+ V T A + P+ + D M + Sbjct: 9 QTIVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHP-PHLAIFDIKMPRMDG 67 Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 +R++ +D+ V +L + D + G + GA+ F+ KPF++ L ++ + + Sbjct: 68 M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRS 126 Query: 122 KSKDE 126 ++++ Sbjct: 127 HARNQ 131 >gi|319795485|ref|YP_004157125.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597948|gb|ADU39014.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 340 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 3/12