RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780892|ref|YP_003065305.1| probable two-component
response regulator protein [Candidatus Liberibacter asiaticus str.
psy62]
(133 letters)
>gnl|CDD|29071 cd00156, REC, Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the
sensor partner in a two-component systems; contains a
phosphoacceptor site that is phosphorylated by histidine
kinase homologs; usually found N-terminal to a DNA
binding effector domain; forms homodimers.
Length = 113
Score = 53.3 bits (128), Expect = 2e-08
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEF 62
L+VD ++R++ R L G+ V EA EA +E P+ +++D M G+ LE
Sbjct: 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEK-PDLILLDIMMPGMDGLEL 59
Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
+ +R+ + L D E + +AGA+ +L KPF+ E L +R L
Sbjct: 60 LRRIRKRGPDIPIIF--LTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112
>gnl|CDD|143854 pfam00072, Response_reg, Response regulator receiver domain. This
domain receives the signal from the sensor partner in
bacterial two-component systems. It is usually found
N-terminal to a DNA binding effector domain.
Length = 111
Score = 53.0 bits (128), Expect = 3e-08
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
+L+VD ++R++ R L G++V EA EA E KE P+ +++D M G+ LE
Sbjct: 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALE-LLKEKRPDLILLDIRMPGMDGLE 59
Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
+ +R+ P T V V L D E + +AGAN FL KPF+ E L
Sbjct: 60 LLRRIRRRPPTTPVIV--LTAHGDEEDAVEALKAGANDFLSKPFDPEELV 107
>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms].
Length = 464
Score = 49.1 bits (117), Expect = 4e-07
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
M +L+VD +R++ G+ V A S EA E + + +++D M G+
Sbjct: 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP-FDLVLLDIRMPGMD 62
Query: 60 -LEFIAHVRQMPLGTDVFVYYLLM--EVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
LE + ++ V ++M D + + R GA FL KPF+ + L +
Sbjct: 63 GLELLKEIKSRDPDLPV----IVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVER 118
Query: 117 LPQMQKSKDENQ 128
++++ + EN+
Sbjct: 119 ALELRELQRENR 130
>gnl|CDD|31127 COG0784, CheY, FOG: CheY-like receiver [Signal transduction
mechanisms].
Length = 130
Score = 46.4 bits (109), Expect = 2e-06
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATS-VCEAREFCEKELLPNYLVIDESMEGV-- 59
+L+VD + R++ + L D G+ V EA EA E + P+ +++D +M G+
Sbjct: 7 RVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDG 66
Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMREL 117
+E + +R G ++ V L D AGA+ +L KP F E L A+R L
Sbjct: 67 IELLRRLRAR--GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRL 123
>gnl|CDD|33243 COG3437, COG3437, Response regulator containing a CheY-like
receiver domain and an HD-GYP domain [Transcription /
Signal transduction mechanisms].
Length = 360
Score = 43.0 bits (101), Expect = 2e-05
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
++LLVD + R L G+ V EA + EA + + E P+ +++D M +
Sbjct: 16 TVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-EEPPDLVLLDVRMPEMDGA 74
Query: 61 EFIAHVRQM-PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
E + ++ M P + V L D E AGA+ +L KP + + L + Q
Sbjct: 75 EVLNKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQ 134
Query: 120 MQKSKDENQ 128
+++++D
Sbjct: 135 LKRNEDFLL 143
>gnl|CDD|31088 COG0745, OmpR, Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription].
Length = 229
Score = 41.9 bits (98), Expect = 5e-05
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
+LLV+ + ++ + + G+ V A EA E ++ P+ +++D + + LE
Sbjct: 3 ILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ--PDLVLLDLMLPDLDGLE 60
Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
+R G+ + L D E + G AGA+ +L KPF+ L +R L
Sbjct: 61 LCRRLRA-KKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRAL 115
>gnl|CDD|32379 COG2197, CitB, Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal
transduction mechanisms / Transcription].
Length = 211
Score = 41.5 bits (97), Expect = 8e-05
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFM--VFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
+L+VD +VR+ R L + V EA++ EA + EL P+ +++D SM G+
Sbjct: 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR-ELKPDVVLLDLSMPGMD 60
Query: 60 -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
LE + +R G D+ V L D +I RAGA+ +LLK + E L A+R +
Sbjct: 61 GLEALKQLRA--RGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAV 117
>gnl|CDD|33501 COG3706, PleD, Response regulator containing a CheY-like receiver
domain and a GGDEF domain [Signal transduction
mechanisms].
Length = 435
Score = 40.7 bits (95), Expect = 1e-04
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
+L+VD R+ R + GF V EAT EA EL P+ +++D +M + L
Sbjct: 134 KILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLA-ELPPDLVLLDANMPDMDGL 192
Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
E +RQ+ D+ + L + D E ++ G N ++ KP LR R Q+
Sbjct: 193 ELCTRLRQLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELR--ARLRRQL 250
Query: 121 QKSKDENQFLDAI 133
++ + E Q +++
Sbjct: 251 RRKRYERQLRESL 263
>gnl|CDD|34203 COG4565, CitB, Response regulator of citrate/malate metabolism
[Transcription / Signal transduction mechanisms].
Length = 224
Score = 37.1 bits (86), Expect = 0.002
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 4 LLLVDSSHIVRKVGRHLFNDF-GF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
+L+++ +V ++ R GF +V A ++ EA+ E E P+ +++D M
Sbjct: 3 VLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE-EFKPDLILLDIYMPDGNG 61
Query: 60 LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
+E + +R DV V + D E + R G +L+KPF E L+ A+ Q
Sbjct: 62 IELLPELRSQHYPVDVIV--ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119
Query: 120 MQKSKDENQFLD 131
+ + + +Q L
Sbjct: 120 KRHALESHQQLS 131
>gnl|CDD|34367 COG4753, COG4753, Response regulator containing CheY-like receiver
domain and AraC-type DNA-binding domain [Signal
transduction mechanisms].
Length = 475
Score = 35.7 bits (82), Expect = 0.004
Identities = 29/131 (22%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGF---MVFEATSVCEAREFCEKELLPNYLVIDESME 57
M +L+VD ++R+ + L + +V A + EA E +E P+ ++ D +M
Sbjct: 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELI-QETQPDIVITDINMP 59
Query: 58 GV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
G+ L+ I +++ T+ + L +FE + G +LLKP ++ L A++
Sbjct: 60 GMDGLDLIKAIKEQSPDTEFII--LSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALK 117
Query: 116 ELPQMQKSKDE 126
++ + + +
Sbjct: 118 KIIGKLEEQQK 128
>gnl|CDD|34204 COG4566, TtrR, Response regulator [Signal transduction mechanisms].
Length = 202
Score = 34.8 bits (80), Expect = 0.008
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 6 LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--PNYLVIDESMEGV--LE 61
+VD VR L GF V S A EF L P L++D M G+ LE
Sbjct: 9 VVDDDESVRDALAFLLESAGFQVKCFAS---AEEFLAAAPLDRPGCLLLDVRMPGMSGLE 65
Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
+ + G + V +L D + +AGA FL KPF+ + L A+
Sbjct: 66 LQDRLAE--RGIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVE 117
>gnl|CDD|164540 CHL00148, orf27, Ycf27; Reviewed.
Length = 240
Score = 32.0 bits (73), Expect = 0.047
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
+L+VD +RK+ + G+ V A+ EA + KE P+ +++D M +
Sbjct: 9 ILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQ-PDLVILDVMMPKLDGYG 67
Query: 62 FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF 105
+R+ +DV + L D I G GA+ +++KPF
Sbjct: 68 VCQEIRK---ESDVPIIMLTALGDVSDRITGLELGADDYVVKPF 108
>gnl|CDD|35739 KOG0519, KOG0519, KOG0519, Sensory transduction histidine kinase
[Signal transduction mechanisms].
Length = 786
Score = 30.8 bits (69), Expect = 0.12
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEF 62
LLVD + + RKV + G V E S EA + + + + +D M + E
Sbjct: 670 LLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEA 729
Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
+R+ + + L + D G + +L KPF E L +RE
Sbjct: 730 TREIRKK-ERWHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREF 783
>gnl|CDD|34205 COG4567, COG4567, Response regulator consisting of a CheY-like
receiver domain and a Fis-type HTH domain [Signal
transduction mechanisms / Transcription].
Length = 182
Score = 30.7 bits (69), Expect = 0.12
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 6/128 (4%)
Query: 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
SLLLVD + GF V A SV EA + P Y V+D + L
Sbjct: 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAA-RTAPPAYAVVDLKLGDGSGL 69
Query: 61 EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM-RELPQ 119
I +R+ D+ + L + + GA +L KP + + + A+ R P
Sbjct: 70 AVIEALRE--RRADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRREPD 127
Query: 120 MQKSKDEN 127
+ EN
Sbjct: 128 EDTAPPEN 135
>gnl|CDD|145756 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal
domain. The N-terminal domain of Acyl-CoA
dehydrogenase is an all-alpha domain.
Length = 113
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 36 EAREFCEKELLPNYLVIDESMEGVLEFIA 64
REF E+E+ P+ DE E E
Sbjct: 10 TVREFAEEEVAPHAAEWDEEGEFPRELWR 38
>gnl|CDD|144171 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This
family is involved in biosynthesis of guanosine
nucleotide. Members of this family contain a TIM barrel
structure. In the inosine monophosphate dehydrogenases 2
CBS domains pfam00571 are inserted in the TIM barrel.
This family is a member of the common phosphate binding
site TIM barrel family.
Length = 467
Score = 26.1 bits (58), Expect = 3.2
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 47 PNYLVIDESM---EGVLEFIAHVRQMPLGTDV 75
+ +VID + E VLE I +++ DV
Sbjct: 236 VDVIVIDSAHGHSEYVLEMIKWIKKKYPDLDV 267
>gnl|CDD|35908 KOG0689, KOG0689, KOG0689, Guanine nucleotide exchange factor for
Rho and Rac GTPases [Signal transduction mechanisms].
Length = 448
Score = 26.1 bits (57), Expect = 3.6
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 33 SVCEAREFCEKELLPNYLVIDESMEGVL-EFIAHVRQMPLGTDVFVY--------YLLME 83
++ E EF +KE LP + + F H R+ Y YLL E
Sbjct: 111 NIKEIYEFHKKEFLPELERCERDPLELGQAFAKHERK--NSVLYVTYCQNKPKSDYLLAE 168
Query: 84 VDFE------KMIAGARAGANSFLLKPFNRET 109
D E + G + +S+L+KP R
Sbjct: 169 YDNEAFFQEYQTQLGHKLDLSSYLIKPVQRIM 200
>gnl|CDD|29616 cd01569, PBEF_like, pre-B-cell colony-enhancing factor (PBEF)-like.
The mammalian members of this group of nicotinate
phosphoribosyltransferases (NAPRTases) were originally
identified as genes whose expression is upregulated upon
activation in lymphoid cells. In general, nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis..
Length = 407
Score = 25.6 bits (56), Expect = 4.1
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 63 IAHVRQMPLGTDVFVYYLLMEVD---FEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
++H Q P GT YL + + G + +L+ P NR+ + +
Sbjct: 9 VSHRLQYPPGTTAVYSYLEPRGGKYYDQTVFFGLQYFLKKYLIDPVNRDFFIDEAEAVFE 68
Query: 120 MQKSKDENQF 129
++ F
Sbjct: 69 AHFGMNDLPF 78
Score = 24.8 bits (54), Expect = 7.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 96 GANSFLLKPFNRETLRFAMR 115
G LL+ R+T FAM+
Sbjct: 360 GMGGGLLQKVTRDTQGFAMK 379
>gnl|CDD|33990 COG4268, McrC, McrBC 5-methylcytosine restriction system component
[Defense mechanisms].
Length = 439
Score = 25.7 bits (56), Expect = 4.6
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 52 IDESMEGVLEFIAHVRQMPLGTDVFVYY---LLMEVDFEKMIAGARAGANSFLLKPFNRE 108
++G ++F H+R+ + ++I S P N
Sbjct: 161 NLPGLKGRIDFARHIRKNLNHGHRISTAFDEFNEDNPLNRLIKSTLEILKSQTSLPTNLR 220
Query: 109 TLRFAMRELPQMQKSKDENQFLDAI 133
R R L ++ S + Q I
Sbjct: 221 EARELYRMLDEVTPSHNVPQDFSYI 245
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and
eukaryotic short/branched chain acyl-CoA
dehydrogenases. Short chain acyl-CoA dehydrogenase
(SCAD). SCAD is a mitochondrial beta-oxidation enzyme.
It catalyzes the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of SCAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. This subgroup also
contains the eukaryotic short/branched chain acyl-CoA
dehydrogenase(SBCAD), the bacterial butyryl-CoA
dehydorgenase(BCAD) and 2-methylbutyryl-CoA
dehydrogenase, which is involved in isoleucine
catabolism. These enzymes are homotetramers.
Length = 373
Score = 25.3 bits (56), Expect = 6.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 38 REFCEKELLPNYLVIDESME 57
R+F EKE+ P +DE E
Sbjct: 11 RDFAEKEIAPLAAEMDEKGE 30
>gnl|CDD|35583 KOG0362, KOG0362, KOG0362, Chaperonin complex component, TCP-1
theta subunit (CCT8) [Posttranslational modification,
protein turnover, chaperones].
Length = 537
Score = 24.9 bits (54), Expect = 7.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 19 HLFNDFGFMVFEATSVCEAREFCE 42
H N + MV + S + R C
Sbjct: 298 HFLNKYKIMVLQINSKFDLRRLCR 321
>gnl|CDD|35362 KOG0140, KOG0140, KOG0140, Medium-chain acyl-CoA dehydrogenase
[Lipid transport and metabolism].
Length = 408
Score = 24.9 bits (54), Expect = 7.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 37 AREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLG 72
AR+F + E++PN D+S E E I ++
Sbjct: 39 ARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFM 74
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life..
Length = 294
Score = 24.9 bits (55), Expect = 8.0
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 32/82 (39%)
Query: 1 MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVI-------- 52
S++ V + N+ + ++TS P+YL++
Sbjct: 227 QGSMIHVKGDLVNPD----RVNEA-LNLHQSTS-------------PSYLILASLDVARA 268
Query: 53 ------DESMEGVLEFIAHVRQ 68
E +E ++E + RQ
Sbjct: 269 MMALEGKELVEELIELALYARQ 290
>gnl|CDD|144984 pfam01596, Methyltransf_3, O-methyltransferase. Members of this
family are O-methyltransferases. The family includes
catechol o-methyltransferase, caffeoyl-CoA
O-methyltransferase, and a family of bacterial
O-methyltransferases that may be involved in antibiotic
production.
Length = 204
Score = 24.6 bits (54), Expect = 8.8
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 99 SFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130
+LK T A L QMQ S +E QFL
Sbjct: 8 HEILKELREAT---AKLPLSQMQISPEEGQFL 36
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.327 0.141 0.404
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,623,021
Number of extensions: 82424
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 35
Length of query: 133
Length of database: 6,263,737
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,470,190
Effective search space: 223509500
Effective search space used: 223509500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (23.8 bits)