RPSBLAST alignment of GI: 254780892 and protein with PDBid: 1kgs

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Length = 225

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 1/126 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  +         F V       E       E   + +++D  +     + 
Sbjct: 5   VLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP-FDVVILDIMLPVHDGWE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
                   G +  V  L    D E  + G   GA+ +L KPF+   L   +R L + +  
Sbjct: 64  ILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123

Query: 124 KDENQF 129
               + 
Sbjct: 124 SKSTKL 129