RPSBLAST alignment of GI: 254780892 and protein with PDBid: 1ny5
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A* Length = 387
Score = 47.2 bits (112), Expect = 1e-06
Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 5 LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEF 62
L+++ + R + + G V A EA + ++ N +++D + V LE
Sbjct: 4 LVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK-HFNVVLLDLLLPDVNGLEI 62
Query: 63 IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
+ +++ T+V V + + + GA FL KP E + + + + +K
Sbjct: 63 LKWIKERSPETEVIVITGHG--TIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120
Query: 123 SKDENQFL 130
+ EN+ L
Sbjct: 121 LRKENELL 128