RPSBLAST alignment of GI: 254780892 and protein with PDBid: 1ny5

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A* Length = 387
 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEF 62
           L+++   + R +     +  G  V  A    EA +   ++   N +++D  +  V  LE 
Sbjct: 4   LVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK-HFNVVLLDLLLPDVNGLEI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +  +++    T+V V         +  +   + GA  FL KP   E +   + +  + +K
Sbjct: 63  LKWIKERSPETEVIVITGHG--TIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120

Query: 123 SKDENQFL 130
            + EN+ L
Sbjct: 121 LRKENELL 128