BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780892|ref|YP_003065305.1| probable two-component
response regulator protein [Candidatus Liberibacter asiaticus str.
psy62]
         (133 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 133

 Score =  273 bits (699), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL
Sbjct: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM
Sbjct: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120

Query: 121 QKSKDENQFLDAI 133
           QKSKDENQFLDAI
Sbjct: 121 QKSKDENQFLDAI 133


>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 236

 Score = 29.6 bits (65), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 86  FEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130
            E  + G ++GA+ ++ KPFN+E L   +R +  +++S+   Q L
Sbjct: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAI--VRRSRGHAQSL 126


>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
           ABC transporter protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 240

 Score = 26.2 bits (56), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 18/77 (23%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--PNYLVIDESMEGV 59
           D L ++D  +++ K  R++  D     F+       R    K LL  PN LV+DE ++G+
Sbjct: 106 DVLQILDRVNLIGKYNRNI-KDLSGGEFQ-------RALLAKALLRKPNLLVLDEPLQGI 157

Query: 60  --------LEFIAHVRQ 68
                    E I  VRQ
Sbjct: 158 DFPGELSLYELITSVRQ 174


>gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 473

 Score = 25.8 bits (55), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 70  PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125
           PL +D   +Y+L+E+   + +  A+  AN+ L   FN++ L   +  LP + + K+
Sbjct: 276 PL-SDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWI--LPSLDEEKN 328


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 25.4 bits (54), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-----ELLPNYLVIDESMEG 58
           +LLV+    VR+  + +    G+ V EA S  +A +  EK     +++ + +V+ E M+G
Sbjct: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG 742

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +  P    +F+     E  F K +   +    SFL KPF+ + L  ++ EL 
Sbjct: 743 PTLLRELRKTYPSLKFIFISG-YAEDAFSKNL--PKDAKFSFLSKPFSLKQLATSVHELL 799

Query: 119 Q 119
           Q
Sbjct: 800 Q 800


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 25.0 bits (53), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 19  HLFNDFGFMVFEATSVCEA-REFCEKELL 46
           H+F+D+G    E +SV  A R+ C ++++
Sbjct: 332 HVFDDYGHHPIEISSVLAAVRQICPRKII 360


>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
          Length = 458

 Score = 23.9 bits (50), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 54  ESMEGVLEFIAHVRQMPLGTD--VFVYYLLMEVDFEKMIAG---ARAGANSFLLKPFNRE 108
           E  + ++E I   RQ   G    VFVYYL+ +   ++++      ++     LL    +E
Sbjct: 395 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 454

Query: 109 TL 110
           T+
Sbjct: 455 TI 456


>gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 205

 Score = 23.9 bits (50), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 54  ESMEGVLEFIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAG---ARAGANSFLLKPFNRE 108
           E  + ++E I   RQ   G    VFVYYL+ +   ++++      ++     LL    +E
Sbjct: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201

Query: 109 TL 110
           T+
Sbjct: 202 TI 203


>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score = 23.5 bits (49), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
           +L+F    +Q+ +G D  V  L +E +   +I G   G+ + ++   N + L
Sbjct: 44  ILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95


>gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 311

 Score = 22.3 bits (46), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 85  DFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129
           DFEK+   +         KPF ++ L  A + + Q+   +   QF
Sbjct: 215 DFEKVQLISSYAHEHIFCKPFTKDLLNLANKNIYQLSNPRYSYQF 259


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score = 22.3 bits (46), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 102 LKPFNRETLRFAMRELPQMQK 122
           L PF R+TL F+     ++QK
Sbjct: 173 LVPFTRQTLLFSATMTDELQK 193


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 22.3 bits (46), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 46  LPNYLVIDESMEGVLEFIAHVRQMPLG 72
           +P YLVI ++ +    F  H ++  LG
Sbjct: 244 IPYYLVISDNSDATFTFSPHPKKGILG 270


>gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 189

 Score = 22.3 bits (46), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 26 FMVFEATSVCEAREFCEKELLPNYLVIDESME 57
          FM     S+ E   F +   L NYLVI + ++
Sbjct: 64 FMNLSGQSLLEVMNFYKLPNLENYLVIHDDLD 95


>gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 382

 Score = 22.3 bits (46), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

Query: 53  DESME-GVLEFIAHVRQM 69
           +ESM  G+LE I+HVR +
Sbjct: 215 EESMRVGILEMISHVRDV 232


>gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 600

 Score = 21.6 bits (44), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 2  DSLLLVDSSHIVRKVGRHLFNDFGFMVF 29
          D L+L D     R++ + ++N    M+F
Sbjct: 71 DPLILTDCDKAARRIVQAIYNSEKIMIF 98


>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score = 21.6 bits (44), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 106 NRETLRFAMRELPQMQKSK 124
           NR+ L F++ ++P+M + K
Sbjct: 667 NRKLLIFSIDQIPEMSRGK 685


>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 805

 Score = 21.6 bits (44), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 2   DSLLLVDSSHI 12
           DSLL VD SH+
Sbjct: 468 DSLLFVDESHV 478


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 21.2 bits (43), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 97  ANSFLLKPFNRETLRFAMRELPQMQKS 123
           ++ F ++ FN +TL+  +REL  +  S
Sbjct: 179 SDIFSVQDFNYDTLQHRLRELSFLNSS 205


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.141    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,959
Number of Sequences: 1233
Number of extensions: 3008
Number of successful extensions: 23
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 18
length of query: 133
length of database: 328,796
effective HSP length: 65
effective length of query: 68
effective length of database: 248,651
effective search space: 16908268
effective search space used: 16908268
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 34 (17.7 bits)