HHsearch alignment for GI: 254780893 and conserved domain: COG3629
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms].
Probab=97.85 E-value=5.7e-05 Score=50.33 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=63.0
Q ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 2233333222-46411688999871899737899999987188777775-303667899988511067888438888782
Q gi|254780893|r 140 TVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGR 217 (236)
Q Consensus 140 ~v~~~g~~i~-LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~-~tld~~I~rLRkKL~~~~~~~~~I~tvrG~ 217 (236)
T Consensus 11 ~i~~dg~~v~~~~~kkrAlla~L~l~~n~~vsRe~l~~llWe~~~~~~Ar~nLR~~l~~lRk~l~----~~~~il~t~~~ 86 (280)
T COG3629 11 RISLDGVKVAVGAPKKRALLAYLILSRNKPVSREKLAGLLWEDSDPSRARANLRTTLHNLRKLLG----DGDVILATEGP 86 (280)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC----CCCEEEECCCC
T ss_conf 78736975546682778999999974788625999997635889826789899999999997348----86515644887
Q ss_pred EEEECCCCC
Q ss_conf 026456887
Q gi|254780893|r 218 GYVLRENAK 226 (236)
Q Consensus 218 GY~l~~~~~ 226 (236)
T Consensus 87 ~~~L~~~~~ 95 (280)
T COG3629 87 GVTLNPGAD 95 (280)
T ss_pred CEEECCCCC
T ss_conf 357557644