HHsearch alignment for GI: 254780893 and conserved domain: COG3706

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].

Probab=98.90  E-value=4.7e-10  Score=80.95  Aligned_cols=92  Identities=29%  Similarity=0.496  Sum_probs=83.2

Q ss_pred             CEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             89999999899999998579947883114987433431112222322331001333210000011232210111223322
Q gi|254780893|r   25 FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN  104 (236)
Q Consensus        25 ~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~  104 (236)
T Consensus        13 ~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~~-~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~   90 (435)
T COG3706          13 KEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEP-AT-VVMVTALDDSAPRVRGLKAGADDFLTKPVN   90 (435)
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCC-CC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             5463425427799997448987487410068867301998763587-51-699860378777556776313441367777


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             21111122222222
Q gi|254780893|r  105 KEELVARIRAIVRR  118 (236)
Q Consensus       105 ~~eL~ari~~llrr  118 (236)
T Consensus        91 ~~~~~~r~~~l~~~  104 (435)
T COG3706          91 DSQLFLRAKSLVRL  104 (435)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             17788752663144