HHsearch alignment for GI: 254780893 and conserved domain: COG3710
>COG3710 CadC DNA-binding winged-HTH domains [Transcription].
Probab=99.73 E-value=9.2e-18 Score=127.32 Aligned_cols=105 Identities=20% Similarity=0.328 Sum_probs=93.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 22222222222222222233333222464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 124 ~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
T Consensus 6 ~~~~~f~~~~l~~~~~~L~r~~~~v~l~~~~~~lL~~L~e~~geVvsk~eL~~~VW~~~~v~~-~~Ltq~I~~LRr~L~d 84 (148)
T COG3710 6 NDYFIFGPFVLDPKLRSLLRGDEVVKLGPRELKLLSLLLERAGEVVSKDELLDAVWPGRIVTV-NTLTQAISALRRALRD 84 (148)
T ss_pred CCEEEECCEEECCCCCEEEECCEEEEECHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHC
T ss_conf 634874768861765769878968886667889999998546860529999998579962644-5499999999998634
Q ss_pred CCCCCCEEEEECCCEEEECCCCCCCC
Q ss_conf 67888438888782026456887545
Q gi|254780893|r 204 AAGGKNYIETVWGRGYVLRENAKDET 229 (236)
Q Consensus 204 ~~~~~~~I~tvrG~GY~l~~~~~~e~ 229 (236)
T Consensus 85 ~~~~~~~I~TvPrrGyk~~~~v~~~~ 110 (148)
T COG3710 85 IGDGHRLIATVPRRGYKFTADVIIII 110 (148)
T ss_pred CCCCCEEEEEECCCCEEECCCEEEEC
T ss_conf 68766389983785469737569951