HHsearch alignment for GI: 254780893 and conserved domain: COG3710

>COG3710 CadC DNA-binding winged-HTH domains [Transcription].
Probab=99.73  E-value=9.2e-18  Score=127.32  Aligned_cols=105  Identities=20%  Similarity=0.328  Sum_probs=93.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             22222222222222222233333222464116889998718997378999999871887777753036678999885110
Q gi|254780893|r  124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN  203 (236)
Q Consensus       124 ~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~  203 (236)
T Consensus         6 ~~~~~f~~~~l~~~~~~L~r~~~~v~l~~~~~~lL~~L~e~~geVvsk~eL~~~VW~~~~v~~-~~Ltq~I~~LRr~L~d   84 (148)
T COG3710           6 NDYFIFGPFVLDPKLRSLLRGDEVVKLGPRELKLLSLLLERAGEVVSKDELLDAVWPGRIVTV-NTLTQAISALRRALRD   84 (148)
T ss_pred             CCEEEECCEEECCCCCEEEECCEEEEECHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHC
T ss_conf             634874768861765769878968886667889999998546860529999998579962644-5499999999998634


Q ss_pred             CCCCCCEEEEECCCEEEECCCCCCCC
Q ss_conf             67888438888782026456887545
Q gi|254780893|r  204 AAGGKNYIETVWGRGYVLRENAKDET  229 (236)
Q Consensus       204 ~~~~~~~I~tvrG~GY~l~~~~~~e~  229 (236)
T Consensus        85 ~~~~~~~I~TvPrrGyk~~~~v~~~~  110 (148)
T COG3710          85 IGDGHRLIATVPRRGYKFTADVIIII  110 (148)
T ss_pred             CCCCCEEEEEECCCCEEECCCEEEEC
T ss_conf             68766389983785469737569951