HHsearch alignment for GI: 254780893 and conserved domain: COG4567
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].
Probab=99.72 E-value=1.8e-17 Score=125.55 Aligned_cols=167 Identities=22% Similarity=0.402 Sum_probs=131.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 99986998999999999998898999999989999999857994788311498743343111222232233100133321
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
T Consensus 12 lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~ 91 (182)
T COG4567 12 LLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTGYA 91 (182)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 58961876999999999860686257614499999998517985288986406887468999998249764389884511
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 00000112322101112233222111112222222222222222222222222222222333332224641168899987
Q gi|254780893|r 83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 (236)
Q Consensus 83 ~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~ 162 (236)
T Consensus 92 sIATAV~AvKlGA~~YLaKPAdaDdi~a---Al~~~~~d~~-----------------~~~~~~pmS~~rl~WE------ 145 (182)
T COG4567 92 SIATAVEAVKLGACDYLAKPADADDILA---ALLRREPDED-----------------TAPPENPMSADRLRWE------ 145 (182)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHCCCCCC-----------------CCCCCCCCCHHHHHHH------
T ss_conf 7999999998624554079777689999---9860278754-----------------5799999745676699------
Q ss_pred HCCCCCCCHHHHHHHH--CCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 1899737899999987--188777775303667899988511067
Q gi|254780893|r 163 LRKNTTLTKEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAA 205 (236)
Q Consensus 163 ~~~g~vvsr~~i~~~v--w~~~~~~~~~tld~~I~rLRkKL~~~~ 205 (236)
T Consensus 146 ----------hIqrvl~e~~~NiSeTARrL~MHRRTLqRkL~KR~ 180 (182)
T COG4567 146 ----------HIQRVLEECEGNISETARRLNMHRRTLQRKLAKRA 180 (182)
T ss_pred ----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ----------99999999377778999996213999999974148