HHsearch alignment for GI: 254780893 and conserved domain: COG4567

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].
Probab=99.72  E-value=1.8e-17  Score=125.55  Aligned_cols=167  Identities=22%  Similarity=0.402  Sum_probs=131.6

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf             99986998999999999998898999999989999999857994788311498743343111222232233100133321
Q gi|254780893|r    3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS   82 (236)
Q Consensus         3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~   82 (236)
T Consensus        12 lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~   91 (182)
T COG4567          12 LLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTGYA   91 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCH
T ss_conf             58961876999999999860686257614499999998517985288986406887468999998249764389884511


Q ss_pred             CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             00000112322101112233222111112222222222222222222222222222222333332224641168899987
Q gi|254780893|r   83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS  162 (236)
Q Consensus        83 ~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~  162 (236)
T Consensus        92 sIATAV~AvKlGA~~YLaKPAdaDdi~a---Al~~~~~d~~-----------------~~~~~~pmS~~rl~WE------  145 (182)
T COG4567          92 SIATAVEAVKLGACDYLAKPADADDILA---ALLRREPDED-----------------TAPPENPMSADRLRWE------  145 (182)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHCCCCCC-----------------CCCCCCCCCHHHHHHH------
T ss_conf             7999999998624554079777689999---9860278754-----------------5799999745676699------


Q ss_pred             HCCCCCCCHHHHHHHH--CCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             1899737899999987--188777775303667899988511067
Q gi|254780893|r  163 LRKNTTLTKEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAA  205 (236)
Q Consensus       163 ~~~g~vvsr~~i~~~v--w~~~~~~~~~tld~~I~rLRkKL~~~~  205 (236)
T Consensus       146 ----------hIqrvl~e~~~NiSeTARrL~MHRRTLqRkL~KR~  180 (182)
T COG4567         146 ----------HIQRVLEECEGNISETARRLNMHRRTLQRKLAKRA  180 (182)
T ss_pred             ----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             ----------99999999377778999996213999999974148