HHsearch alignment for GI: 254780893 and conserved domain: PRK09935

>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.96  E-value=2e-28  Score=191.52  Aligned_cols=189  Identities=20%  Similarity=0.296  Sum_probs=156.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf             9599986998999999999998-898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r    1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL   78 (236)
Q Consensus         1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l   78 (236)
T Consensus         4 ~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~ilvl   83 (210)
T PRK09935          4 ASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKVLFL   83 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf             88999859699999999999629892899998999999999974799999988999998864056789873899708997


Q ss_pred             CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             33210000011232210111223322211111222222222222222222222222222222233333222464116889
Q gi|254780893|r   79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI  158 (236)
Q Consensus        79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL  158 (236)
T Consensus        84 s~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~~~~~~~~~~-----~~~~~~~~~~~~~~~~Lt~RE~eVL  158 (210)
T PRK09935         84 SSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSGYSFFPSETLN-----FIKSNKCSKGSSTDMPLSNREVTVL  158 (210)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH-----HHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             17672999999996687768867899999999999998599536989999-----9873436666556789998999999


Q ss_pred             HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             998718997378999999871887777753036678999885110
Q gi|254780893|r  159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN  203 (236)
Q Consensus       159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~  203 (236)
T Consensus       159 ~ll~~--G--~snkeIA~~L-----~iS~~TV~~h~~~I~~KL~v  194 (210)
T PRK09935        159 RYLAN--G--LSNKEIAEQL-----LLSNKTISAHKSNIYGKLGL  194 (210)
T ss_pred             HHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf             99986--9--9999999894-----98899999999999998199