HHsearch alignment for GI: 254780893 and conserved domain: PRK10161
>PRK10161 transcriptional regulator PhoB; Provisional.
Probab=100.00 E-value=0 Score=414.60 Aligned_cols=222 Identities=29% Similarity=0.479 Sum_probs=209.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC--CCCCEECC
Q ss_conf 9599986998999999999998898999999989999999857994788311498743343111222232--23310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK--ISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~--~~~pII~l 78 (236)
T Consensus 3 ~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII~l 82 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 82 (229)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 71999959999999999999977999999899999999985289989999789988763358788775024689758999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 33210000011232210111223322211111222222222222-22222222222222222223333322246411688
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~-~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~l 157 (236)
T Consensus 83 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~l~~d~~~~~v~~~~~~i~LT~~E~~L 162 (229)
T PRK10161 83 TARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKL 162 (229)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEEEEEEEEECCEEEECCHHHHHH
T ss_conf 55666577999987698765208999899999999997123777765432677789861015999999998706899999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECC
Q ss_conf 999871899737899999987188777775303667899988511067888438888782026456
Q gi|254780893|r 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 (236)
Q Consensus 158 L~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~ 223 (236)
T Consensus 163 L~~L~~~~g~vvsr~~L~~~vwg~~~~~~~rtldv~I~rLRkKl~~~-~~~~~I~TvrG~GYr~~~ 227 (229)
T PRK10161 163 LHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFST 227 (229)
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCEEEECCCCEEECC
T ss_conf 99999779987979999998639998988473999999999974567-999819986584740571