HHsearch alignment for GI: 254780893 and conserved domain: PRK10336
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional.
Probab=100.00 E-value=0 Score=419.04 Aligned_cols=218 Identities=34% Similarity=0.574 Sum_probs=210.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
T Consensus 1 mkILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~~~~~PII~lta 80 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA 80 (219)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf 98999938999999999999987999999899999999986289699999799999985631010465278887899806
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 21000001123221011122332221111122222222222222222222222222222223333322246411688999
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~ 160 (236)
T Consensus 81 ~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr~~~~~~~~~~~g~~~ld~~~~~~~~~g~~i~LT~~E~~lL~~ 160 (219)
T PRK10336 81 RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL 160 (219)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHEEEECCCEEEEECHHHHHHHHH
T ss_conf 89999999999769988868897679999999999611546666431027789831362996499799837899999999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECC
Q ss_conf 871899737899999987188777775303667899988511067888438888782026456
Q gi|254780893|r 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 (236)
Q Consensus 161 L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~ 223 (236)
T Consensus 161 L~~~~g~vvsre~l~~~vw~~~~~~~~~~vdv~I~rLRkKl~~-----~~I~TvrG~GY~l~e 218 (219)
T PRK10336 161 LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGE 218 (219)
T ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEECCCCEEECC
T ss_conf 9968996397999999962889888858199999999976798-----858981575868662