HHsearch alignment for GI: 254780893 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=99.95 E-value=5.6e-29 Score=194.85 Aligned_cols=116 Identities=26% Similarity=0.521 Sum_probs=112.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
T Consensus 6 ~~ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlvllD~~mp~~~Gl~lL~~l~~~~p~~pvIviT~ 85 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTA 85 (441)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 85999839899999999999977998999899999999986489999998899999989999999984298982899969
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 210000011232210111223322211111222222
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
T Consensus 86 ~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al 121 (441)
T PRK10365 86 YSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 (441)
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 999899999998285123407888999999999999