HHsearch alignment for GI: 254780893 and conserved domain: PRK10430
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=99.95 E-value=1e-27 Score=187.23 Aligned_cols=212 Identities=15% Similarity=0.237 Sum_probs=148.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHH--HHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9599986998999999999998-898999-999989999999--857994788311498743343111222232233100
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELC--KFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVC 76 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~--~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII 76 (236)
T Consensus 2 irVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~VI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 87999929899999999998518990899998999999999965799985899789999997899999999858998199
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC---CCCC--CC
Q ss_conf 13332100000112322101112233222111112222222222222-222222222222222222333---3322--24
Q gi|254780893|r 77 ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-QSLIVTGDLSVNLDAKTVEVQ---GHRI--HL 150 (236)
Q Consensus 77 ~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~-~~~~~~g~~~~d~~~~~v~~~---g~~i--~L 150 (236)
T Consensus 82 ~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~~~~~l~~~~~~--~Q~~iD~l~~~~~~~~~~~~~lPKGl 159 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKRQYY--DQAELDQLIHGSSSNEQDPRRLPKGL 159 (239)
T ss_pred EEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9972688999999998395030489999999999999999999985457878--99999999850578888766699999
Q ss_pred CCCHH-HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC------EEEECC
Q ss_conf 64116-88999871899737899999987188777775303667899988511067888438888782------026456
Q gi|254780893|r 151 TGKEY-QMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR------GYVLRE 223 (236)
Q Consensus 151 T~~E~-~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~------GY~l~~ 223 (236)
T Consensus 160 ~~~TL~~i~~~l~~~~~~~~sa~eva~~~-----giSRvTaRRYLe~L~~~------g~~~~~~~YG~~GRP~~~Y~l~~ 228 (239)
T PRK10430 160 TPQTLRTLCQWIDAHQDYEFSTDELANEV-----NISRVSCRKYLIWLVNC------HILFTSIHYGVTGRPVYRYRLQA 228 (239)
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHC------CEEEEEECCCCCCCCCEEEEECC
T ss_conf 99999999999982799984699999885-----85298899999999868------95899835789999865787373
Q ss_pred CC
Q ss_conf 88
Q gi|254780893|r 224 NA 225 (236)
Q Consensus 224 ~~ 225 (236)
T Consensus 229 ~~ 230 (239)
T PRK10430 229 EH 230 (239)
T ss_pred CH
T ss_conf 14