HHsearch alignment for GI: 254780893 and conserved domain: PRK10529
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional.
Probab=100.00 E-value=0 Score=414.52 Aligned_cols=222 Identities=30% Similarity=0.490 Sum_probs=211.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
T Consensus 2 ~~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~iR~~~-~~pII~lta 80 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWS-AIPVIVLSA 80 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECCC-CCCEEEEEC
T ss_conf 9899997989999999999998899999979999999986117998999807888888763310001279-987899954
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 210000011232210111223322211111222222222222--222222222222222222233333222464116889
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~--~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL 158 (236)
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr~~~~~~~~~~~~~~~l~~d~~~~~v~~~g~~i~LT~~E~~lL 160 (225)
T PRK10529 81 RSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATPAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLL 160 (225)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCEEEECCCCCCCCHHHHHHH
T ss_conf 68989999999769876540785459999999999714037888786499999999903399999996131366899999
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECC
Q ss_conf 99871899737899999987188777775303667899988511067888438888782026456
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~ 223 (236)
T Consensus 161 ~~L~~~~g~vvsre~L~~~vw~~~~~~~~~~idv~I~rLRkKl~~~~~~~~~I~TvrG~GYr~~P 225 (225)
T PRK10529 161 AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPTRPRHFITETGIGYRFMP 225 (225)
T ss_pred HHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
T ss_conf 99997799619699999996499989886879999999999720078999828956781656659