HHsearch alignment for GI: 254780893 and conserved domain: PRK10693
>PRK10693 response regulator of RpoS; Provisional.
Probab=99.96 E-value=3.3e-30 Score=202.28 Aligned_cols=116 Identities=23% Similarity=0.383 Sum_probs=110.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
T Consensus 9 kILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIvlTa~ 88 (337)
T PRK10693 9 QILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVISAT 88 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 89999499999999999999789999998999999999865899999996899999989999999985899649999868
Q ss_pred CCHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 1000001123221011122332-22111112222222
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPF-NKEELVARIRAIVR 117 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~-~~~eL~ari~~llr 117 (236)
T Consensus 89 ~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~ 125 (337)
T PRK10693 89 ENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY 125 (337)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999999999749958997896999999999998751