HHsearch alignment for GI: 254780893 and conserved domain: PRK10816
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional.
Probab=100.00 E-value=0 Score=404.47 Aligned_cols=222 Identities=32% Similarity=0.530 Sum_probs=213.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
T Consensus 1 mkILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lta 80 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEEC
T ss_conf 98999959899999999999978999999899999999997579989999799989886400120110489876899944
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 21000001123221011122332221111122222222222222222222222222222223333322246411688999
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~ 160 (236)
T Consensus 81 ~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr~~~~~~~~~~~~~~~~d~~~~~~~~~g~~i~LT~~E~~LL~~ 160 (223)
T PRK10816 81 RESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET 160 (223)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEHHHCEEEECCEEEEECHHHHHHHHH
T ss_conf 45677899999869988641897778999999999665557877618878868711005898799899706899999999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECC
Q ss_conf 871899737899999987188777775303667899988511067888438888782026456
Q gi|254780893|r 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 (236)
Q Consensus 161 L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~ 223 (236)
T Consensus 161 L~~~~~~vvsre~l~~~vw~~~~~~~~~sld~~I~rLRkKl~~~~-~~~~I~tvrG~GY~~~~ 222 (223)
T PRK10816 161 LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFEL 222 (223)
T ss_pred HHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCEEEECCCCEEEEE
T ss_conf 998799238399999985499878886779999999999743358-99818997895679875