HHsearch alignment for GI: 254780893 and conserved domain: PRK10955
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=100.00 E-value=0 Score=406.98 Aligned_cols=221 Identities=36% Similarity=0.600 Sum_probs=207.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
T Consensus 3 kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PII~lta~ 80 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQT-HQTPVIMLTAR 80 (232)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEECC-CCCCEEEEECC
T ss_conf 8999969899999999999888999999899999999964-898999991899988867230124407-88878998055
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10000011232210111223322211111222222222222--------2222222222222222222333332224641
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK 153 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~--------~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~ 153 (236)
T Consensus 81 ~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~~~~~~~~~~~~~~~~~~~~l~ld~~~~~~~~~~~~i~LT~~ 160 (232)
T PRK10955 81 GSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGT 160 (232)
T ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHH
T ss_conf 67688999997697576338999899999999997615431001235678856998989998787799999999966899
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 16889998718997378999999871887777753036678999885110678884388887820264568
Q gi|254780893|r 154 EYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 154 E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
T Consensus 161 E~~lL~~L~~~~g~vvsre~L~~~vwg~~~~~~~rtidv~I~rLRkKL~~~~~~~~~I~TvrG~GY~lvs~ 231 (232)
T PRK10955 161 EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 (232)
T ss_pred HHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEC
T ss_conf 99999999978995097999999971889888858299999999995411689998199845706599867