HHsearch alignment for GI: 254780893 and conserved domain: PRK11517
>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=100.00 E-value=0 Score=417.80 Aligned_cols=221 Identities=32% Similarity=0.509 Sum_probs=209.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
T Consensus 1 MkILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~-~~~pII~lta 79 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLTA 79 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEEC
T ss_conf 989999698999999999999889999998999999999852899999984999873689999999856-8864899956
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 21000001123221011122332221111122222222222222222222222222222223333322246411688999
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~ 160 (236)
T Consensus 80 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr~~~~-~~~~~~~~l~ld~~~~~v~~~~~~i~LT~~E~~LL~~ 158 (223)
T PRK11517 80 RDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWL 158 (223)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCC-CCCEEECCEEEEHHHEEEEECCEEECCCHHHHHHHHH
T ss_conf 556578999998398776208977899999999996414577-8717988789800131896299898299999999999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 8718997378999999871887777753036678999885110678884388887820264568
Q gi|254780893|r 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 161 L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
T Consensus 159 L~~~~g~vvsre~l~~~vwg~~~~~~~~~idv~I~rLRkKl~-~~~~~~~I~TvrG~GYrl~a~ 221 (223)
T PRK11517 159 LASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAV 221 (223)
T ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCEEEECCCCEEEEEC
T ss_conf 986899859899999996298878885879999999999857-889999589766816699531