HHsearch alignment for GI: 254780893 and conserved domain: PRK13435
>PRK13435 response regulator; Provisional.
Probab=99.93 E-value=2.7e-26 Score=178.67 Aligned_cols=126 Identities=23% Similarity=0.373 Sum_probs=108.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECC
Q ss_conf 9599986998999999999998898999-9999899999998579947883114987-4334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~~~~~pII~l 78 (236)
T Consensus 2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~-~~~ipvI~l 80 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSI-DGGVEVIFM 80 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 7899989989999999999998799799975999999999765999899978878999989999999987-599838999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 33210000011232210111223322211111222222222-22222222222
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RGHAQSLIVTG 130 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~-~~~~~~~~~~g 130 (236)
T Consensus 81 Ta~~d---~~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~rr~~~~a~~p~p~g 130 (141)
T PRK13435 81 TANPE---RVGHDFAGALGVIAKPYSLRQVARALSYVAARRVDDDASGPTPFG 130 (141)
T ss_pred ECCHH---HHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 77799---860134599858989999899999999999715689999999985