HHsearch alignment for GI: 254780893 and conserved domain: PRK13837
>PRK13837 two-component VirA-like sensor kinase; Provisional.
Probab=99.74 E-value=3.9e-18 Score=129.58 Aligned_cols=119 Identities=20% Similarity=0.239 Sum_probs=106.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 599986998999999999998898999999989999999857--994788311498743343111222232233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~--~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
T Consensus 701 ~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~~~p~lpVil-s 778 (831)
T PRK13837 701 TVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAIAWISKDGKRFDLVLVD-QPSLGDSQLAIAALHAAAPTLPIIL-A 778 (831)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCCEEEE-E
T ss_conf 7999859889999999999967996888689999999998389985399988-9999987999999986189974999-7
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3210000011232210111223322211111222222222222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~ 122 (236)
T Consensus 779 g~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~aL~~~r~~ 821 (831)
T PRK13837 779 GSSLKMAAREALATAIAEILPKPISSRTLAYALRTALATARAA 821 (831)
T ss_pred CCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 6881443311022266706509999999999999998488887