HHsearch alignment for GI: 254780893 and conserved domain: PRK13870
>PRK13870 transcriptional regulator TraR; Provisional.
Probab=95.28 E-value=0.032 Score=33.81 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=42.8
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 32224641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 146 ~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
T Consensus 170 ~~~~LT~RE~E~L~W~A~--GK--T~~EIA~IL-----gISe~TV~fHl~na~~KL~a~ 219 (234)
T PRK13870 170 DAAWLDPKEATYLRWIAV--GM--TMEEIADVE-----GVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_pred CCCCCCHHHHHHHHHHHC--CC--CHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
T ss_conf 766799799999999978--99--899999997-----988999999999999995899