HHsearch alignment for GI: 254780893 and conserved domain: TIGR01884

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein; InterPro: IPR010163 Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity..
Probab=94.27  E-value=0.14  Score=29.88  Aligned_cols=153  Identities=18%  Similarity=0.230  Sum_probs=84.9

Q ss_pred             CCCCEEEECCCCCCCCCCCCC-----CCCCCCCCC--CCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             799478831149874334311-----122223223--3100133321000001123221011122332221111122222
Q gi|254780893|r   43 YEFDAIILDLGLTDIPGFEVL-----RALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI  115 (236)
Q Consensus        43 ~~~DlvIlD~~lp~~~G~~~~-----~~ir~~~~~--~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~l  115 (236)
T Consensus        59 ~~~~~~~~~i~l~~~~G~~~~~~~~~~~~~~~~~~~r~~i~~lsGG~r~l~-~~~~-~~a--~~~~~~----------Gv  124 (231)
T TIGR01884        59 KLVEVEVKEIELKDVSGIEEVVRQVSDIIKEVEEPSRRVIVNLSGGMRILV-LILL-LLA--ILVKTR----------GV  124 (231)
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHH-HHHH-HHH--HHHHCC----------CE
T ss_conf             567731689985067887899999999985013788789998118758999-9999-988--754236----------61


Q ss_pred             CCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf             22222222222--2-22222222222222333332-----2246411688999871899737899999987188777775
Q gi|254780893|r  116 VRRSRGHAQSL--I-VTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV  187 (236)
Q Consensus       116 lrr~~~~~~~~--~-~~g~~~~d~~~~~v~~~g~~-----i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~  187 (236)
T Consensus       125 frGikve~~~V~~~~e~~Gidlni~se~~~~~~~~~~~~~~~~s~~~~~vL~~L~~~~Ge-~~v~~iA~~l-----g~s~  198 (231)
T TIGR01884       125 FRGIKVEVLRVELESEAEGIDLNIRSELVDFIELELVPLLAGLSREELKVLEALKAEKGE-KSVKNIAKKL-----GKSL  198 (231)
T ss_pred             EEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE-ECHHHHHHHH-----CCCH
T ss_conf             310688418999986477244420543002220122244678889999999998507880-5287799885-----7888


Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCEEEEE---CCCEEEECC
Q ss_conf             303667899988511067888438888---782026456
Q gi|254780893|r  188 KIIDVFICKLRKKLSNAAGGKNYIETV---WGRGYVLRE  223 (236)
Q Consensus       188 ~tld~~I~rLRkKL~~~~~~~~~I~tv---rG~GY~l~~  223 (236)
T Consensus       199 ~T~~~~~~~Lek~--------gLv~~~~~~k~~~~~~t~  229 (231)
T TIGR01884       199 STISRHLAELEKK--------GLVESKGRGKGKRYSVTK  229 (231)
T ss_pred             HHHHHHHHHHHHC--------CCEEEEECCCCCCCEECC
T ss_conf             7999999988744--------754563046787200013