HHsearch alignment for GI: 254780893 and conserved domain: TIGR01884
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein; InterPro: IPR010163 Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity..
Probab=94.27 E-value=0.14 Score=29.88 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=84.9
Q ss_pred CCCCEEEECCCCCCCCCCCCC-----CCCCCCCCC--CCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 799478831149874334311-----122223223--3100133321000001123221011122332221111122222
Q gi|254780893|r 43 YEFDAIILDLGLTDIPGFEVL-----RALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 (236)
Q Consensus 43 ~~~DlvIlD~~lp~~~G~~~~-----~~ir~~~~~--~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~l 115 (236)
T Consensus 59 ~~~~~~~~~i~l~~~~G~~~~~~~~~~~~~~~~~~~r~~i~~lsGG~r~l~-~~~~-~~a--~~~~~~----------Gv 124 (231)
T TIGR01884 59 KLVEVEVKEIELKDVSGIEEVVRQVSDIIKEVEEPSRRVIVNLSGGMRILV-LILL-LLA--ILVKTR----------GV 124 (231)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHH-HHHH-HHH--HHHHCC----------CE
T ss_conf 567731689985067887899999999985013788789998118758999-9999-988--754236----------61
Q ss_pred CCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 22222222222--2-22222222222222333332-----2246411688999871899737899999987188777775
Q gi|254780893|r 116 VRRSRGHAQSL--I-VTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV 187 (236)
Q Consensus 116 lrr~~~~~~~~--~-~~g~~~~d~~~~~v~~~g~~-----i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~ 187 (236)
T Consensus 125 frGikve~~~V~~~~e~~Gidlni~se~~~~~~~~~~~~~~~~s~~~~~vL~~L~~~~Ge-~~v~~iA~~l-----g~s~ 198 (231)
T TIGR01884 125 FRGIKVEVLRVELESEAEGIDLNIRSELVDFIELELVPLLAGLSREELKVLEALKAEKGE-KSVKNIAKKL-----GKSL 198 (231)
T ss_pred EEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE-ECHHHHHHHH-----CCCH
T ss_conf 310688418999986477244420543002220122244678889999999998507880-5287799885-----7888
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEEE---CCCEEEECC
Q ss_conf 303667899988511067888438888---782026456
Q gi|254780893|r 188 KIIDVFICKLRKKLSNAAGGKNYIETV---WGRGYVLRE 223 (236)
Q Consensus 188 ~tld~~I~rLRkKL~~~~~~~~~I~tv---rG~GY~l~~ 223 (236)
T Consensus 199 ~T~~~~~~~Lek~--------gLv~~~~~~k~~~~~~t~ 229 (231)
T TIGR01884 199 STISRHLAELEKK--------GLVESKGRGKGKRYSVTK 229 (231)
T ss_pred HHHHHHHHHHHHC--------CCEEEEECCCCCCCEECC
T ss_conf 7999999988744--------754563046787200013