HHsearch alignment for GI: 254780893 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.72 E-value=1.8e-18 Score=131.66 Aligned_cols=112 Identities=26% Similarity=0.424 Sum_probs=102.9
Q ss_pred EEEECCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC-CC----CCCCCCCCCCCCCCCCCEE
Q ss_conf 99986998999999999998-898999999989999999857994788311498-74----3343111222232233100
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DI----PGFEVLRALRVAKISTPVC 76 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~-~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp-~~----~G~~~~~~ir~~~~~~pII 76 (236)
T Consensus 1 LLiVeDD~glQKQLk--Ws~G~~Ye~~~A~DR~sAiA~vRRheP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~TKVI 78 (451)
T TIGR02915 1 LLIVEDDLGLQKQLK--WSFGADYEVAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVI 78 (451)
T ss_pred CCEEECCHHHHHHHH--HHCCCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 924536866567876--415788403553475789998605699647736755789887458999999999638980489
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1333210000011232210111223322211111222222
Q gi|254780893|r 77 ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 77 ~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
T Consensus 79 ViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf 118 (451)
T TIGR02915 79 VITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAF 118 (451)
T ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9866898388999964375101357875789999999988