HHsearch alignment for GI: 254780893 and conserved domain: TIGR02956

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.71  E-value=4.2e-18  Score=129.39  Aligned_cols=115  Identities=27%  Similarity=0.398  Sum_probs=107.1

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCC--------CC
Q ss_conf             59998699899999999999889899999998999999985-7994788311498743343111222232--------23
Q gi|254780893|r    2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAK--------IS   72 (236)
Q Consensus         2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~--------~~   72 (236)
T Consensus       763 ~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~p  842 (1052)
T TIGR02956       763 RVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDEP  842 (1052)
T ss_pred             EEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             13246447477999999984279447208549999999854887675455157889865678999999997320444567


Q ss_pred             CCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31001333210000011232210111223322211111222222
Q gi|254780893|r   73 TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV  116 (236)
Q Consensus        73 ~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll  116 (236)
T Consensus       843 ~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l  886 (1052)
T TIGR02956       843 VKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL  886 (1052)
T ss_pred             CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             77222113344776999975302663479987788999999987