HHsearch alignment for GI: 254780893 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.71 E-value=4.2e-18 Score=129.39 Aligned_cols=115 Identities=27% Similarity=0.398 Sum_probs=107.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCC--------CC
Q ss_conf 59998699899999999999889899999998999999985-7994788311498743343111222232--------23
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAK--------IS 72 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~--------~~ 72 (236)
T Consensus 763 ~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~p 842 (1052)
T TIGR02956 763 RVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDEP 842 (1052)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 13246447477999999984279447208549999999854887675455157889865678999999997320444567
Q ss_pred CCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31001333210000011232210111223322211111222222
Q gi|254780893|r 73 TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 73 ~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
T Consensus 843 ~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 843 VKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 77222113344776999975302663479987788999999987