HHsearch alignment for GI: 254780893 and conserved domain: TIGR03471
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=90.71 E-value=0.22 Score=28.77 Aligned_cols=87 Identities=15% Similarity=0.226 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHCCCEEEE-ECC--HHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHC
Q ss_conf 9999999999988989999-999--89999999857994788311498743-3431112222322331001333210000
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYV-TDL--GEDGIELCKFYEFDAIILDLGLTDIP-GFEVLRALRVAKISTPVCILSGMSSIED 86 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~-a~~--~~eal~~~~~~~~DlvIlD~~lp~~~-G~~~~~~ir~~~~~~pII~ls~~~~~~~ 86 (236)
T Consensus 35 ~wlay~a~~~~~~-~~iDa~~~~~~~~~~~~~--~~~~d~v~i~t~Tps~~~~~~~a~~~K~~~P~~~ivlgG~H~T~~p 111 (472)
T TIGR03471 35 TWLAQPAAMIPGS-RLVDAPPHGVTIDDTLAI--AKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLP 111 (472)
T ss_pred HHHHHHHHCCCCC-CEEECCCCCCCHHHHHHH--HCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 7899986404678-375277668998999998--5069989999258656889999999997688988999787643689
Q ss_pred CCCCC-CCCCCCCCCC
Q ss_conf 01123-2210111223
Q gi|254780893|r 87 KVRGL-QSGADDYISK 101 (236)
Q Consensus 87 ~~~al-~~GAddyi~K 101 (236)
T Consensus 112 e-e~L~~~~~iD~Vvr 126 (472)
T TIGR03471 112 E-KTLKQGPAIDFVCR 126 (472)
T ss_pred H-HHHHCCCCEEEEEE
T ss_conf 9-99843897269992