HHsearch alignment for GI: 254780893 and conserved domain: TIGR03541

>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.
Probab=96.55  E-value=0.0035  Score=39.58  Aligned_cols=49  Identities=16%  Similarity=0.181  Sum_probs=42.8

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             2224641168899987189973789999998718877777530366789998851106
Q gi|254780893|r  147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA  204 (236)
Q Consensus       147 ~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~  204 (236)
T Consensus       169 ~~~LT~RE~E~L~w~A~--Gk--t~~eIa~iL-----~iSe~TV~~hl~~a~~KLga~  217 (232)
T TIGR03541       169 AGVLSEREREVLAWTAL--GR--RQADIAAIL-----GISERTVENHLRSARRKLGVA  217 (232)
T ss_pred             CCCCCHHHHHHHHHHHC--CC--CHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
T ss_conf             99989899999999987--99--999999996-----989999999999999984899