HHsearch alignment for GI: 254780893 and conserved domain: TIGR03541
>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.
Probab=96.55 E-value=0.0035 Score=39.58 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 2224641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 147 ~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
T Consensus 169 ~~~LT~RE~E~L~w~A~--Gk--t~~eIa~iL-----~iSe~TV~~hl~~a~~KLga~ 217 (232)
T TIGR03541 169 AGVLSEREREVLAWTAL--GR--RQADIAAIL-----GISERTVENHLRSARRKLGVA 217 (232)
T ss_pred CCCCCHHHHHHHHHHHC--CC--CHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
T ss_conf 99989899999999987--99--999999996-----989999999999999984899