HHsearch alignment for GI: 254780893 and conserved domain: cd00156
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers.
Probab=99.93 E-value=6.4e-27 Score=182.45 Aligned_cols=113 Identities=35% Similarity=0.622 Sum_probs=109.1
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 99869989999999999988989999999899999998579947883114987433431112222322331001333210
Q gi|254780893|r 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 4 Livedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~mP~~~G~el~~~ir~~~~~~pvI~lT~~~~ 80 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGD 80 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 98927299999999999988999999899999999987579999997799989872699999998589995999978789
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 000011232210111223322211111222222
Q gi|254780893|r 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 84 ~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
T Consensus 81 ~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 81 DEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 999999997689789969899999999999869