Query gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 236
No_of_seqs 118 out of 23860
Neff 7.7
Searched_HMMs 39220
Date Mon May 30 02:05:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780893.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02154 PhoB phosphate regul 100.0 0 0 484.5 10.5 220 2-222 4-226 (226)
2 PRK09468 ompR osmolarity respo 100.0 0 0 425.1 16.3 225 1-225 6-237 (239)
3 PRK10701 DNA-binding transcrip 100.0 0 0 421.8 16.6 226 1-227 2-239 (240)
4 PRK09836 DNA-binding transcrip 100.0 0 0 422.2 16.2 223 1-224 1-224 (226)
5 PRK10336 DNA-binding transcrip 100.0 0 0 419.0 15.6 218 1-223 1-218 (219)
6 PRK11083 DNA-binding response 100.0 0 0 419.3 14.9 223 1-223 4-229 (229)
7 CHL00148 orf27 Ycf27; Reviewed 100.0 0 0 416.9 16.5 223 1-224 7-238 (240)
8 PRK11517 transcriptional regul 100.0 0 0 417.8 15.0 221 1-224 1-221 (223)
9 PRK10529 DNA-binding transcrip 100.0 0 0 414.5 16.2 222 1-223 2-225 (225)
10 PRK10161 transcriptional regul 100.0 0 0 414.6 15.4 222 1-223 3-227 (229)
11 PRK10955 DNA-binding transcrip 100.0 0 0 407.0 16.0 221 2-224 3-231 (232)
12 TIGR01387 cztR_silR_copR heavy 100.0 0 0 418.6 4.5 218 3-221 1-219 (219)
13 PRK10816 DNA-binding transcrip 100.0 0 0 404.5 16.0 222 1-223 1-222 (223)
14 PRK10643 DNA-binding transcrip 100.0 0 0 404.8 15.3 220 1-225 1-220 (222)
15 COG0745 OmpR Response regulato 100.0 0 0 404.6 14.6 223 1-224 1-228 (229)
16 PRK11173 two-component respons 100.0 0 0 399.3 16.0 223 2-225 5-236 (237)
17 PRK10710 DNA-binding transcrip 100.0 0 0 396.0 16.6 224 1-225 11-236 (240)
18 PRK13856 two-component respons 100.0 0 0 384.8 15.9 228 2-232 3-236 (241)
19 PRK10766 DNA-binding transcrip 100.0 0 0 376.9 14.5 210 1-216 3-224 (224)
20 PRK09390 fixJ response regulat 100.0 1E-34 2.6E-39 229.4 10.6 182 2-203 5-186 (202)
21 PRK10651 transcriptional regul 100.0 8.3E-31 2.1E-35 205.9 11.8 191 1-203 7-200 (216)
22 PRK10403 transcriptional regul 100.0 9.1E-31 2.3E-35 205.6 11.1 189 1-203 7-198 (215)
23 PRK09958 DNA-binding transcrip 100.0 5.9E-30 1.5E-34 200.7 11.4 185 1-202 1-187 (204)
24 COG3947 Response regulator con 100.0 1.6E-29 4.2E-34 198.1 11.1 218 1-224 1-221 (361)
25 PRK10693 response regulator of 100.0 3.3E-30 8.3E-35 202.3 6.3 116 2-117 9-125 (337)
26 PRK10046 dpiA two-component re 100.0 4E-29 1E-33 195.8 10.0 176 1-178 5-187 (225)
27 PRK09483 response regulator; P 100.0 7.7E-29 2E-33 194.0 11.1 188 1-203 2-193 (216)
28 PRK09581 pleD response regulat 100.0 1.2E-29 2.9E-34 199.0 6.3 116 2-117 4-121 (457)
29 PRK09935 transcriptional regul 100.0 2E-28 5.1E-33 191.5 10.9 189 1-203 4-194 (210)
30 PRK10923 glnG nitrogen regulat 100.0 3.4E-29 8.7E-34 196.2 6.1 115 2-116 5-119 (469)
31 PRK10365 transcriptional regul 100.0 5.6E-29 1.4E-33 194.9 6.3 116 1-116 6-121 (441)
32 PRK11361 acetoacetate metaboli 100.0 1.2E-28 3E-33 192.9 6.0 116 2-117 6-121 (457)
33 pfam00072 Response_reg Respons 99.9 2.9E-28 7.4E-33 190.6 7.2 111 3-113 1-111 (111)
34 COG2197 CitB Response regulato 99.9 1.6E-27 4E-32 186.1 9.9 190 1-203 1-193 (211)
35 PRK10430 DNA-binding transcrip 99.9 1E-27 2.6E-32 187.2 8.8 212 1-225 2-230 (239)
36 PRK10610 chemotaxis regulatory 99.9 4.8E-28 1.2E-32 189.2 6.3 119 1-119 6-127 (129)
37 PRK10360 DNA-binding transcrip 99.9 2.6E-27 6.7E-32 184.8 9.8 179 1-203 2-182 (196)
38 PRK10840 transcriptional regul 99.9 1.3E-26 3.3E-31 180.6 9.3 186 1-203 4-195 (216)
39 PRK11107 hybrid sensory histid 99.9 2.2E-26 5.5E-31 179.3 9.6 116 1-116 669-786 (920)
40 PRK10841 hybrid sensory kinase 99.9 7E-27 1.8E-31 182.2 6.1 118 1-118 825-942 (947)
41 cd00156 REC Signal receiver do 99.9 6.4E-27 1.6E-31 182.5 5.8 113 4-116 1-113 (113)
42 PRK13435 response regulator; P 99.9 2.7E-26 7E-31 178.7 7.5 126 1-130 2-130 (141)
43 PRK09959 hybrid sensory histid 99.9 8.1E-26 2.1E-30 175.8 7.2 114 1-114 959-1072(1197)
44 COG4566 TtrR Response regulato 99.9 9.1E-26 2.3E-30 175.5 6.0 181 3-203 7-187 (202)
45 cd00383 trans_reg_C Effector d 99.9 7.1E-25 1.8E-29 170.2 7.4 95 127-221 1-95 (95)
46 TIGR02875 spore_0_A sporulatio 99.9 3.7E-25 9.4E-30 171.9 4.7 118 1-118 3-124 (270)
47 TIGR01818 ntrC nitrogen regula 99.9 3.5E-25 9E-30 172.0 4.1 115 3-117 1-116 (471)
48 PRK13557 histidine kinase; Pro 99.9 1.2E-24 3E-29 168.9 6.7 117 2-118 415-533 (538)
49 COG2204 AtoC Response regulato 99.9 7.5E-25 1.9E-29 170.0 5.7 116 2-117 6-121 (464)
50 PRK11091 aerobic respiration c 99.9 2.4E-24 6.1E-29 167.0 6.7 116 1-117 526-644 (779)
51 PRK11466 hybrid sensory histid 99.9 5.8E-24 1.5E-28 164.7 6.6 117 1-117 682-799 (912)
52 PRK00742 chemotaxis-specific m 99.9 1.9E-23 4.9E-28 161.5 6.4 116 1-117 3-131 (345)
53 COG4753 Response regulator con 99.9 1E-23 2.7E-28 163.1 4.5 116 1-116 2-120 (475)
54 PRK10100 DNA-binding transcrip 99.9 1.6E-22 4.1E-27 155.9 7.2 186 2-202 12-199 (216)
55 COG4565 CitB Response regulato 99.9 3.4E-22 8.7E-27 154.0 8.6 177 1-178 1-183 (224)
56 COG3437 Response regulator con 99.9 6.3E-23 1.6E-27 158.4 3.8 117 1-117 15-134 (360)
57 COG3706 PleD Response regulato 99.9 2.1E-22 5.5E-27 155.2 5.4 119 2-120 134-254 (435)
58 PRK12555 chemotaxis-specific m 99.9 5.3E-22 1.4E-26 152.8 7.1 116 1-117 2-130 (340)
59 pfam00486 Trans_reg_C Transcri 99.8 4E-20 1E-24 141.6 7.3 77 145-221 1-77 (77)
60 PRK11475 DNA-binding transcrip 99.8 3E-19 7.5E-24 136.3 6.2 170 13-203 3-179 (205)
61 PRK11697 putative two-componen 99.8 6.9E-19 1.8E-23 134.1 6.7 114 1-117 2-117 (239)
62 KOG0519 consensus 99.8 2.7E-19 6.9E-24 136.6 3.7 114 2-115 668-783 (786)
63 PRK13837 two-component VirA-li 99.7 3.9E-18 9.9E-23 129.6 7.3 119 2-122 701-821 (831)
64 COG3710 CadC DNA-binding winge 99.7 9.2E-18 2.4E-22 127.3 8.3 105 124-229 6-110 (148)
65 COG4567 Response regulator con 99.7 1.8E-17 4.6E-22 125.6 8.5 167 3-205 12-180 (182)
66 TIGR02915 PEP_resp_reg putativ 99.7 1.8E-18 4.5E-23 131.7 2.7 112 3-116 1-118 (451)
67 smart00862 Trans_reg_C Transcr 99.7 1.6E-17 4.1E-22 125.9 7.4 77 145-221 1-78 (78)
68 TIGR02956 TMAO_torS TMAO reduc 99.7 4.2E-18 1.1E-22 129.4 4.0 115 2-116 763-886 (1052)
69 COG0784 CheY FOG: CheY-like re 99.7 1.6E-17 4.1E-22 125.8 6.2 116 1-116 6-124 (130)
70 PRK12370 invasion protein regu 99.7 3.8E-17 9.6E-22 123.7 7.2 102 123-227 10-111 (553)
71 PRK09191 two-component respons 99.7 6E-17 1.5E-21 122.4 6.4 111 2-115 139-251 (261)
72 COG2201 CheB Chemotaxis respon 99.6 2E-15 5.2E-20 113.2 7.0 116 1-117 2-130 (350)
73 PRK10153 DNA-binding transcrip 99.6 8.8E-15 2.2E-19 109.4 8.4 101 124-225 3-104 (512)
74 PRK13558 bacterio-opsin activa 99.4 8.2E-15 2.1E-19 109.6 -0.6 113 1-115 18-130 (674)
75 COG3279 LytT Response regulato 99.3 5.6E-13 1.4E-17 98.5 3.2 115 1-117 2-118 (244)
76 COG3707 AmiR Response regulato 99.3 9E-13 2.3E-17 97.3 2.8 116 1-117 6-122 (194)
77 PRK11906 transcriptional regul 99.2 2.4E-11 6.2E-16 88.7 7.1 85 139-225 21-105 (458)
78 PRK09581 pleD response regulat 99.1 7.3E-11 1.9E-15 85.8 5.3 116 2-118 157-274 (457)
79 smart00448 REC cheY-homologous 99.0 2.8E-09 7.2E-14 76.2 8.4 55 1-55 1-55 (55)
80 COG3706 PleD Response regulato 98.9 4.7E-10 1.2E-14 80.9 1.7 92 25-118 13-104 (435)
81 PRK07239 bifunctional uroporph 98.7 4.8E-08 1.2E-12 68.9 7.6 95 127-227 284-378 (381)
82 PRK11107 hybrid sensory histid 98.3 1.3E-06 3.4E-11 60.2 6.0 108 1-112 537-646 (920)
83 pfam06490 FleQ Flagellar regul 98.0 1.1E-05 2.8E-10 54.7 5.5 104 2-112 1-104 (109)
84 COG3629 DnrI DNA-binding trans 97.8 5.7E-05 1.5E-09 50.3 6.7 83 140-226 11-95 (280)
85 pfam03709 OKR_DC_1_N Orn/Lys/A 97.1 0.00047 1.2E-08 44.8 3.6 86 12-100 5-91 (111)
86 PRK04841 transcriptional regul 97.1 0.00066 1.7E-08 43.9 4.2 47 148-203 837-883 (903)
87 PRK09954 hypothetical protein; 97.0 0.0018 4.6E-08 41.3 5.7 53 163-221 232-284 (362)
88 pfam00196 GerE Bacterial regul 96.9 0.0012 3.2E-08 42.3 4.2 46 149-203 3-48 (58)
89 cd06170 LuxR_C_like C-terminal 96.9 0.0014 3.6E-08 41.9 4.3 45 150-203 1-45 (57)
90 smart00421 HTH_LUXR helix_turn 96.6 0.0029 7.4E-08 40.1 4.3 46 149-203 3-48 (58)
91 TIGR03020 EpsA transcriptional 96.6 0.003 7.5E-08 40.0 4.2 46 149-203 190-235 (247)
92 PRK11886 biotin--protein ligas 96.6 0.0086 2.2E-07 37.2 6.5 16 163-178 226-241 (319)
93 TIGR03541 reg_near_HchA LuxR f 96.6 0.0035 8.9E-08 39.6 4.3 49 147-204 169-217 (232)
94 pfam08279 HTH_11 HTH domain. T 96.5 0.0066 1.7E-07 37.9 5.3 55 153-220 1-55 (55)
95 PRK13566 anthranilate synthase 96.3 0.011 2.7E-07 36.6 5.7 76 1-79 524-602 (724)
96 PRK09863 putative frv operon r 96.2 0.014 3.6E-07 35.9 6.0 54 2-55 351-406 (585)
97 TIGR01815 TrpE-clade3 anthrani 96.1 0.014 3.5E-07 36.0 5.4 101 2-106 526-627 (726)
98 PRK10188 DNA-binding transcrip 95.9 0.012 3E-07 36.4 4.4 48 147-203 177-224 (240)
99 COG2909 MalT ATP-dependent tra 95.9 0.0079 2E-07 37.4 3.3 47 147-202 829-875 (894)
100 PRK13870 transcriptional regul 95.3 0.032 8.1E-07 33.8 4.6 50 146-204 170-219 (234)
101 cd02067 B12-binding B12 bindin 95.1 0.035 8.9E-07 33.5 4.3 87 13-100 16-108 (119)
102 COG0512 PabA Anthranilate/para 95.1 0.043 1.1E-06 33.0 4.7 78 1-79 2-81 (191)
103 PRK07765 para-aminobenzoate sy 94.8 0.1 2.7E-06 30.7 6.0 78 1-79 1-83 (221)
104 PRK09522 bifunctional anthrani 94.6 0.084 2.1E-06 31.3 5.2 78 1-79 2-84 (531)
105 COG1959 Predicted transcriptio 94.5 0.092 2.4E-06 31.0 5.3 60 155-227 11-73 (150)
106 COG1654 BirA Biotin operon rep 94.5 0.14 3.6E-06 29.9 6.1 60 153-224 4-63 (79)
107 TIGR00738 rrf2_super rrf2 fami 94.4 0.097 2.5E-06 30.9 5.2 59 155-226 11-72 (133)
108 TIGR01884 cas_HTH CRISPR locus 94.3 0.14 3.6E-06 29.9 5.8 153 43-223 59-229 (231)
109 CHL00162 thiG thiamin biosynth 94.2 0.14 3.5E-06 29.9 5.6 96 2-100 109-217 (267)
110 PRK05637 anthranilate synthase 94.1 0.086 2.2E-06 31.2 4.4 77 1-79 2-80 (208)
111 pfam02310 B12-binding B12 bind 93.9 0.11 2.8E-06 30.6 4.5 89 10-99 14-109 (121)
112 PRK12423 LexA repressor; Provi 93.8 0.17 4.5E-06 29.3 5.5 17 10-26 9-25 (202)
113 PRK11920 rirA iron-responsive 93.7 0.16 4.2E-06 29.5 5.3 58 155-225 11-70 (153)
114 COG2771 CsgD DNA-binding HTH d 93.5 0.13 3.3E-06 30.1 4.4 48 147-203 2-49 (65)
115 pfam05690 ThiG Thiazole biosyn 93.4 0.21 5.4E-06 28.8 5.4 96 2-100 94-202 (246)
116 COG4999 Uncharacterized domain 93.3 0.067 1.7E-06 31.8 2.7 105 2-111 13-120 (140)
117 pfam02082 Rrf2 Transcriptional 92.9 0.15 3.9E-06 29.7 4.0 60 155-227 10-72 (82)
118 PRK10669 putative cation:proto 92.7 0.15 3.9E-06 29.7 3.9 92 2-100 442-534 (558)
119 PRK11840 bifunctional sulfur c 92.7 0.35 9E-06 27.5 5.7 83 15-100 189-278 (327)
120 PRK00208 thiG thiazole synthas 92.6 0.3 7.5E-06 28.0 5.2 96 2-100 96-204 (256)
121 cd02070 corrinoid_protein_B12- 92.5 0.24 6.1E-06 28.5 4.6 91 10-103 95-193 (201)
122 PRK10857 DNA-binding transcrip 92.3 0.23 5.8E-06 28.6 4.2 62 152-226 6-72 (164)
123 cd04728 ThiG Thiazole synthase 92.1 0.38 9.7E-06 27.3 5.2 96 2-100 95-203 (248)
124 PRK09271 flavodoxin; Provision 92.0 0.31 8E-06 27.8 4.7 84 1-85 1-97 (160)
125 cd02069 methionine_synthase_B1 91.8 0.45 1.1E-05 26.9 5.3 95 8-102 99-202 (213)
126 cd02068 radical_SAM_B12_BD B12 91.8 0.16 4.2E-06 29.5 3.0 87 13-100 5-95 (127)
127 PRK11014 transcriptional repre 91.7 0.41 1.1E-05 27.1 5.0 59 156-227 12-73 (141)
128 PRK07649 para-aminobenzoate/an 91.7 0.53 1.3E-05 26.5 5.6 76 3-79 2-79 (195)
129 COG1091 RfbD dTDP-4-dehydrorha 91.6 0.69 1.8E-05 25.8 6.1 61 1-62 1-68 (281)
130 PRK00758 GMP synthase subunit 91.4 0.59 1.5E-05 26.1 5.6 73 2-79 1-74 (184)
131 PRK08007 para-aminobenzoate sy 90.9 0.56 1.4E-05 26.3 5.0 76 3-79 2-79 (187)
132 TIGR03471 HpnJ hopanoid biosyn 90.7 0.22 5.5E-06 28.8 2.8 87 11-101 35-126 (472)
133 PRK00215 LexA repressor; Valid 90.7 1.2 3E-05 24.3 6.6 16 11-26 8-23 (204)
134 PRK06774 para-aminobenzoate sy 89.9 0.75 1.9E-05 25.5 4.9 77 3-80 2-80 (191)
135 PRK05670 anthranilate synthase 89.6 0.71 1.8E-05 25.7 4.7 77 2-79 1-79 (192)
136 cd06358 PBP1_NHase Type I peri 89.5 1.8 4.5E-05 23.3 6.8 79 2-82 134-223 (333)
137 pfam03965 Pencillinase_R Penic 89.2 1.7 4.2E-05 23.5 6.3 69 150-228 1-69 (115)
138 cd01743 GATase1_Anthranilate_S 88.6 0.74 1.9E-05 25.6 4.2 76 3-79 1-78 (184)
139 pfam02254 TrkA_N TrkA-N domain 88.3 0.67 1.7E-05 25.8 3.8 91 2-99 22-113 (115)
140 PRK09987 dTDP-4-dehydrorhamnos 88.2 2.2 5.6E-05 22.7 6.6 59 1-59 1-69 (299)
141 cd04730 NPD_like 2-Nitropropan 87.9 1 2.7E-05 24.7 4.6 61 32-100 68-128 (236)
142 pfam07688 KaiA KaiA domain. Th 87.9 1.8 4.6E-05 23.3 5.8 76 3-81 3-80 (283)
143 cd02071 MM_CoA_mut_B12_BD meth 87.8 0.92 2.3E-05 25.0 4.3 88 12-100 15-108 (122)
144 PRK03659 glutathione-regulated 87.7 0.49 1.2E-05 26.7 2.8 97 1-104 424-521 (602)
145 COG2022 ThiG Uncharacterized e 87.6 1.3 3.3E-05 24.1 4.9 82 16-100 122-210 (262)
146 CHL00101 trpG anthranilate syn 87.0 1.6 4.2E-05 23.5 5.2 76 3-79 2-79 (190)
147 PRK03958 tRNA 2'-O-methylase; 86.7 2.7 6.8E-05 22.2 6.2 76 2-80 33-110 (175)
148 PRK08857 para-aminobenzoate sy 86.7 1.5 3.9E-05 23.7 4.8 77 3-80 2-80 (192)
149 PRK03562 glutathione-regulated 86.4 0.69 1.8E-05 25.8 3.0 97 1-104 423-520 (615)
150 TIGR01754 flav_RNR ribonucleot 85.5 0.49 1.3E-05 26.6 1.9 94 1-103 1-108 (145)
151 cd03825 GT1_wcfI_like This fam 85.4 2.9 7.3E-05 22.0 5.7 52 1-52 1-59 (365)
152 cd02072 Glm_B12_BD B12 binding 85.4 1.6 4.2E-05 23.5 4.5 101 12-112 15-126 (128)
153 PRK09496 trkA potassium transp 85.1 3.2 8.2E-05 21.7 6.0 77 1-83 1-77 (455)
154 CHL00194 ycf39 Ycf39; Provisio 84.9 3.3 8.4E-05 21.7 6.2 54 1-55 1-55 (319)
155 pfam05582 Peptidase_U57 YabG p 84.2 3 7.7E-05 21.9 5.4 93 2-96 107-222 (287)
156 pfam01726 LexA_DNA_bind LexA D 83.9 1.9 4.8E-05 23.1 4.2 48 149-200 3-53 (65)
157 cd06348 PBP1_ABC_ligand_bindin 83.8 3.7 9.3E-05 21.4 6.7 78 4-83 142-229 (344)
158 PRK09423 gldA glycerol dehydro 83.5 3.8 9.7E-05 21.3 5.8 74 2-79 31-115 (366)
159 TIGR00631 uvrb excinuclease AB 83.0 4 0.0001 21.2 5.9 92 2-118 449-546 (667)
160 PRK02261 methylaspartate mutas 82.9 2 5.2E-05 22.9 4.1 103 12-116 19-134 (137)
161 cd06335 PBP1_ABC_ligand_bindin 82.8 4 0.0001 21.1 7.0 79 2-82 140-229 (347)
162 COG2185 Sbm Methylmalonyl-CoA 82.4 1.3 3.4E-05 24.0 3.0 104 7-113 23-134 (143)
163 PRK10558 alpha-dehydro-beta-de 82.4 1.2 3E-05 24.4 2.7 96 10-106 4-103 (256)
164 PRK06930 positive control sigm 82.3 2.3 5.8E-05 22.7 4.1 49 148-204 113-161 (170)
165 PRK11564 stationary phase indu 82.0 4.3 0.00011 21.0 6.3 10 5-14 76-85 (426)
166 PRK06895 para-aminobenzoate sy 81.6 3.5 8.9E-05 21.5 4.9 76 1-79 3-80 (191)
167 pfam10087 DUF2325 Uncharacteri 79.9 3.6 9.2E-05 21.4 4.5 80 2-82 1-83 (96)
168 cd06296 PBP1_CatR_like Ligand- 79.8 4.2 0.00011 21.1 4.8 67 11-82 16-88 (270)
169 COG1497 Predicted transcriptio 79.7 4.6 0.00012 20.8 5.0 11 192-202 236-246 (260)
170 PRK13138 consensus 79.5 2.3 5.9E-05 22.6 3.4 71 35-105 31-131 (264)
171 cd01844 SGNH_hydrolase_like_6 79.2 1.6 4E-05 23.6 2.5 61 22-82 29-103 (177)
172 PRK06522 2-dehydropantoate 2-r 79.2 5.4 0.00014 20.4 6.2 42 1-43 1-42 (307)
173 cd06342 PBP1_ABC_LIVBP_like Ty 79.0 5.4 0.00014 20.4 6.2 77 2-80 137-224 (334)
174 TIGR03466 HpnA hopanoid-associ 78.8 4.9 0.00013 20.6 4.9 52 1-52 1-52 (328)
175 KOG1562 consensus 78.3 5.7 0.00015 20.2 6.1 61 2-62 147-213 (337)
176 TIGR02855 spore_yabG sporulati 78.3 5.7 0.00015 20.2 5.7 92 2-96 115-230 (292)
177 COG3682 Predicted transcriptio 78.0 3.7 9.5E-05 21.4 4.1 50 148-200 2-51 (123)
178 TIGR03239 GarL 2-dehydro-3-deo 77.5 2.2 5.7E-05 22.7 2.8 91 15-106 2-96 (249)
179 pfam08461 HTH_12 Ribonuclease 77.4 5.1 0.00013 20.5 4.7 44 156-200 2-45 (66)
180 PRK09426 methylmalonyl-CoA mut 77.3 6.1 0.00016 20.1 5.2 13 211-223 225-237 (715)
181 PRK04885 ppnK inorganic polyph 77.2 4.4 0.00011 20.9 4.2 43 1-60 1-47 (265)
182 PRK08295 RNA polymerase factor 76.8 4.6 0.00012 20.8 4.3 47 149-204 155-201 (209)
183 pfam00478 IMPDH IMP dehydrogen 76.4 0.62 1.6E-05 26.0 -0.3 66 32-98 223-289 (467)
184 PRK08782 consensus 75.9 2.1 5.3E-05 22.9 2.3 96 13-110 7-104 (219)
185 PRK05718 keto-hydroxyglutarate 75.5 2.5 6.3E-05 22.4 2.6 97 12-110 4-102 (212)
186 TIGR02937 sigma70-ECF RNA poly 75.5 4.7 0.00012 20.7 4.0 47 149-203 114-160 (162)
187 PRK13151 consensus 75.2 7 0.00018 19.7 5.9 50 1-60 1-50 (195)
188 pfam01047 MarR MarR family. Th 75.1 5.8 0.00015 20.2 4.4 44 150-200 1-44 (59)
189 cd06268 PBP1_ABC_transporter_L 75.0 7.1 0.00018 19.7 6.8 10 72-81 90-99 (298)
190 COG1693 Repressor of nif and g 75.0 3.6 9.1E-05 21.5 3.3 25 3-27 14-38 (325)
191 cd06338 PBP1_ABC_ligand_bindin 75.0 7.1 0.00018 19.7 6.4 76 2-79 143-229 (345)
192 cd01568 QPRTase_NadC Quinolina 74.6 5.6 0.00014 20.3 4.2 10 169-178 189-198 (269)
193 COG4635 HemG Flavodoxin [Energ 74.5 6.5 0.00017 19.9 4.5 51 1-53 1-56 (175)
194 cd06327 PBP1_SBP_like_1 Peripl 74.0 7.5 0.00019 19.5 6.3 76 2-79 137-223 (334)
195 cd06329 PBP1_SBP_like_3 Peripl 73.9 7.5 0.00019 19.5 6.6 77 2-80 145-235 (342)
196 PRK08904 consensus 73.4 2.6 6.7E-05 22.3 2.3 89 19-109 6-96 (207)
197 cd06336 PBP1_ABC_ligand_bindin 72.9 7.9 0.0002 19.4 5.7 18 33-50 182-199 (347)
198 TIGR00988 hip integration host 72.7 6.1 0.00016 20.0 4.1 55 170-225 2-57 (94)
199 PRK06015 keto-hydroxyglutarate 72.6 3.5 8.8E-05 21.5 2.8 94 15-110 7-102 (212)
200 cd02065 B12-binding_like B12 b 72.6 8.1 0.00021 19.3 4.8 88 12-99 15-110 (125)
201 TIGR00619 sbcd nuclease SbcCD, 72.5 2.9 7.3E-05 22.0 2.4 78 32-109 36-125 (275)
202 pfam04131 NanE Putative N-acet 72.4 8.2 0.00021 19.3 5.2 46 132-178 111-163 (192)
203 PRK11924 RNA polymerase sigma 72.1 6.7 0.00017 19.8 4.1 48 149-204 125-172 (180)
204 COG0763 LpxB Lipid A disacchar 71.9 3.5 8.9E-05 21.5 2.7 72 35-108 76-151 (381)
205 PRK13119 consensus 71.9 3.2 8.2E-05 21.7 2.5 81 27-107 22-133 (261)
206 COG1609 PurR Transcriptional r 71.8 8.5 0.00022 19.2 5.7 69 10-83 74-148 (333)
207 PRK13112 consensus 71.2 3.5 8.8E-05 21.5 2.5 79 29-107 27-136 (279)
208 PRK06857 consensus 70.9 3.8 9.7E-05 21.3 2.7 81 27-109 17-98 (209)
209 cd06282 PBP1_GntR_like_2 Ligan 70.7 8.9 0.00023 19.1 6.0 68 10-81 15-88 (266)
210 PRK01130 N-acetylmannosamine-6 70.7 4 0.0001 21.1 2.8 48 131-178 137-193 (222)
211 cd06285 PBP1_LacI_like_7 Ligan 70.6 9 0.00023 19.0 6.1 68 10-82 15-88 (265)
212 PRK13116 consensus 70.3 4.2 0.00011 21.1 2.8 78 30-107 27-135 (278)
213 COG0421 SpeE Spermidine syntha 70.1 8.9 0.00023 19.1 4.4 76 2-78 102-188 (282)
214 pfam00117 GATase Glutamine ami 69.8 9 0.00023 19.0 4.4 74 4-79 1-78 (187)
215 TIGR00614 recQ_fam ATP-depende 69.4 4.9 0.00012 20.6 2.9 68 41-108 130-207 (497)
216 TIGR01497 kdpB K+-transporting 69.3 3 7.6E-05 21.9 1.8 82 15-100 398-490 (675)
217 TIGR01743 purR_Bsub pur operon 69.3 8.6 0.00022 19.1 4.2 58 155-219 8-65 (269)
218 PRK13170 hisH imidazole glycer 69.3 9.6 0.00024 18.9 5.8 50 1-60 1-50 (196)
219 PRK13117 consensus 69.2 4 0.0001 21.1 2.5 81 27-107 24-135 (268)
220 cd06273 PBP1_GntR_like_1 This 69.2 9.6 0.00025 18.9 6.1 66 11-81 16-87 (268)
221 TIGR00708 cobA cob(I)alamin ad 69.0 2.4 6.2E-05 22.5 1.3 55 34-89 104-163 (191)
222 PRK13121 consensus 68.9 4.1 0.0001 21.1 2.5 79 29-107 26-135 (265)
223 cd04729 NanE N-acetylmannosami 68.9 4.2 0.00011 21.0 2.6 49 130-178 140-196 (219)
224 PRK07455 keto-hydroxyglutarate 68.7 4.9 0.00013 20.6 2.9 92 15-110 5-100 (210)
225 pfam07638 Sigma70_ECF ECF sigm 68.6 8.9 0.00023 19.1 4.2 48 148-203 134-181 (185)
226 PRK13118 consensus 68.5 4.1 0.0001 21.1 2.4 79 29-107 26-135 (269)
227 pfam00290 Trp_syntA Tryptophan 68.3 4.1 0.0001 21.1 2.4 77 31-107 20-127 (258)
228 TIGR03407 urea_ABC_UrtA urea A 68.1 10 0.00026 18.7 5.9 69 2-72 136-215 (359)
229 cd01742 GATase1_GMP_Synthase T 68.1 10 0.00026 18.7 5.6 74 3-79 1-77 (181)
230 PRK06552 keto-hydroxyglutarate 67.9 4.9 0.00012 20.6 2.7 95 15-110 5-103 (209)
231 cd06326 PBP1_STKc_like Type I 67.7 10 0.00026 18.7 6.5 79 2-82 138-227 (336)
232 cd01542 PBP1_TreR_like Ligand- 67.4 10 0.00027 18.6 5.8 65 11-80 16-86 (259)
233 PRK10675 UDP-galactose-4-epime 67.3 11 0.00027 18.6 7.3 32 1-32 1-32 (338)
234 TIGR02944 suf_reg_Xantho FeS a 67.2 8.5 0.00022 19.2 3.8 66 150-228 7-74 (130)
235 PRK13113 consensus 67.0 5.1 0.00013 20.5 2.6 78 29-106 26-134 (263)
236 cd06299 PBP1_LacI_like_13 Liga 66.9 11 0.00027 18.6 6.2 66 11-81 16-87 (265)
237 PRK05567 inositol-5'-monophosp 66.9 1.6 4E-05 23.6 -0.0 67 31-98 227-294 (486)
238 pfam04309 G3P_antiterm Glycero 66.9 2.8 7.2E-05 22.1 1.3 46 4-49 23-76 (174)
239 PRK00025 lpxB lipid-A-disaccha 66.6 4.2 0.00011 21.0 2.1 44 35-80 76-119 (382)
240 pfam01081 Aldolase KDPG and KH 66.5 3.1 7.9E-05 21.8 1.5 89 19-109 4-94 (196)
241 KOG2550 consensus 66.5 2.7 6.8E-05 22.2 1.1 20 32-51 251-270 (503)
242 COG0313 Predicted methyltransf 65.8 7.9 0.0002 19.4 3.4 77 3-85 33-119 (275)
243 cd06283 PBP1_RegR_EndR_KdgR_li 65.6 11 0.00029 18.4 6.1 66 11-81 16-87 (267)
244 COG3967 DltE Short-chain dehyd 65.6 11 0.00029 18.4 5.3 93 3-99 8-101 (245)
245 cd01831 Endoglucanase_E_like E 65.4 11 0.00029 18.5 4.1 60 10-81 32-105 (169)
246 smart00347 HTH_MARR helix_turn 65.3 11 0.00028 18.5 4.1 47 147-200 5-51 (101)
247 PRK00811 spermidine synthase; 65.0 12 0.0003 18.3 4.7 57 2-59 104-167 (283)
248 PRK03612 spermidine synthase; 64.8 12 0.0003 18.3 5.9 121 2-138 319-454 (516)
249 cd06345 PBP1_ABC_ligand_bindin 64.3 12 0.00031 18.3 6.5 66 13-80 161-233 (344)
250 cd03823 GT1_ExpE7_like This fa 64.2 11 0.00028 18.5 3.9 30 2-31 1-39 (359)
251 cd06355 PBP1_FmdD_like Peripla 64.2 12 0.00031 18.3 6.4 69 2-72 135-214 (348)
252 cd06292 PBP1_LacI_like_10 Liga 64.1 12 0.00031 18.2 6.1 70 11-82 16-93 (273)
253 PRK08655 prephenate dehydrogen 63.9 12 0.00031 18.2 6.2 31 1-31 1-31 (441)
254 PRK13114 consensus 63.7 5.4 0.00014 20.4 2.3 78 29-106 22-130 (266)
255 cd06323 PBP1_ribose_binding Pe 63.6 12 0.00032 18.2 6.1 68 10-81 15-89 (268)
256 PRK00994 F420-dependent methyl 63.6 12 0.00032 18.2 4.4 83 21-105 28-118 (276)
257 pfam02684 LpxB Lipid-A-disacch 63.6 5 0.00013 20.6 2.1 73 34-108 72-148 (373)
258 COG4122 Predicted O-methyltran 63.5 12 0.00032 18.2 6.8 55 2-56 86-144 (219)
259 pfam09182 PuR_N Bacterial puri 63.3 13 0.00032 18.2 6.0 59 153-218 5-63 (70)
260 PRK13144 consensus 63.3 13 0.00032 18.2 6.0 51 1-61 1-51 (190)
261 PRK07413 hypothetical protein; 63.3 4.8 0.00012 20.7 1.9 55 34-89 115-174 (382)
262 PRK12515 RNA polymerase sigma 63.2 13 0.00032 18.1 4.5 48 149-204 131-178 (189)
263 pfam01596 Methyltransf_3 O-met 63.0 13 0.00032 18.1 7.3 52 2-53 71-129 (204)
264 pfam01729 QRPTase_C Quinolinat 62.0 7.5 0.00019 19.5 2.7 51 28-81 85-135 (169)
265 PRK09652 RNA polymerase sigma 62.0 13 0.00034 18.0 4.3 47 149-203 137-183 (192)
266 pfam08281 Sigma70_r4_2 Sigma-7 61.5 13 0.00032 18.2 3.8 45 149-201 10-54 (54)
267 TIGR00087 surE 5'/3'-nucleotid 61.1 9.8 0.00025 18.8 3.2 29 1-29 1-38 (326)
268 PRK10128 putative aldolase; Pr 61.0 6 0.00015 20.1 2.1 75 31-106 9-85 (250)
269 TIGR03151 enACPred_II putative 60.7 14 0.00036 17.9 5.3 82 16-99 101-188 (307)
270 cd03802 GT1_AviGT4_like This f 60.5 14 0.00036 17.8 4.6 30 1-30 1-42 (335)
271 cd06298 PBP1_CcpA_like Ligand- 60.3 14 0.00036 17.8 5.3 67 11-82 16-88 (268)
272 PRK08605 D-lactate dehydrogena 60.3 14 0.00036 17.8 6.1 51 1-51 2-52 (332)
273 LOAD_surE consensus 60.3 14 0.00036 17.8 4.7 30 1-30 1-33 (192)
274 pfam03060 NPD 2-nitropropane d 60.2 14 0.00037 17.8 5.2 84 14-99 127-219 (330)
275 PRK07428 nicotinate-nucleotide 60.1 11 0.00028 18.5 3.3 16 8-23 6-21 (285)
276 PRK02645 ppnK inorganic polyph 59.9 11 0.00027 18.6 3.2 72 2-79 5-88 (304)
277 PRK13120 consensus 59.9 6.7 0.00017 19.8 2.2 78 30-107 31-139 (285)
278 PRK05693 short chain dehydroge 59.9 15 0.00037 17.8 6.8 75 1-77 1-77 (274)
279 PRK13943 protein-L-isoaspartat 59.3 14 0.00037 17.8 3.8 64 2-68 102-167 (317)
280 COG1568 Predicted methyltransf 59.0 13 0.00032 18.2 3.5 66 148-218 256-333 (354)
281 cd06337 PBP1_ABC_ligand_bindin 58.9 15 0.00038 17.7 6.2 60 18-79 170-236 (357)
282 PRK03220 consensus 58.8 10 0.00027 18.6 3.0 75 26-101 26-104 (257)
283 cd06274 PBP1_FruR Ligand bindi 58.6 15 0.00039 17.7 5.5 66 11-81 16-87 (264)
284 PRK13919 putative RNA polymera 58.6 15 0.00039 17.7 4.5 48 149-204 136-183 (187)
285 cd06334 PBP1_ABC_ligand_bindin 58.6 15 0.00039 17.7 6.4 82 2-85 142-234 (351)
286 PRK07414 cob(I)yrinic acid a,c 58.5 6.3 0.00016 20.0 1.9 42 166-216 116-157 (178)
287 TIGR02985 Sig70_bacteroi1 RNA 58.4 11 0.00028 18.5 3.1 47 149-203 119-165 (167)
288 TIGR01302 IMP_dehydrog inosine 58.3 4.7 0.00012 20.7 1.2 39 38-76 245-284 (476)
289 COG0118 HisH Glutamine amidotr 58.2 16 0.0004 17.6 4.5 44 1-50 2-45 (204)
290 PRK06953 short chain dehydroge 58.0 16 0.0004 17.6 6.7 55 1-55 1-56 (222)
291 cd01537 PBP1_Repressors_Sugar_ 57.9 16 0.0004 17.6 6.1 69 10-82 15-89 (264)
292 cd01575 PBP1_GntR Ligand-bindi 57.8 16 0.0004 17.6 5.9 66 10-80 15-86 (268)
293 PRK11790 D-3-phosphoglycerate 57.5 16 0.00041 17.5 4.5 46 1-51 11-60 (409)
294 PRK13131 consensus 57.0 8.9 0.00023 19.1 2.4 48 60-107 75-128 (257)
295 cd06346 PBP1_ABC_ligand_bindin 56.7 16 0.00042 17.5 7.3 18 188-205 254-271 (312)
296 COG0742 N6-adenine-specific me 56.6 16 0.00042 17.5 6.0 53 2-54 68-124 (187)
297 KOG1203 consensus 56.6 16 0.00042 17.5 5.2 79 1-79 80-159 (411)
298 cd06333 PBP1_ABC-type_HAAT_lik 56.6 17 0.00042 17.5 7.4 14 190-203 262-275 (312)
299 pfam00563 EAL EAL domain. This 56.5 5.9 0.00015 20.2 1.4 19 49-67 17-35 (233)
300 PRK09140 2-dehydro-3-deoxy-6-p 55.8 9.1 0.00023 19.0 2.3 91 18-109 5-97 (206)
301 KOG4175 consensus 55.4 6.6 0.00017 19.9 1.5 78 31-108 29-137 (268)
302 cd01825 SGNH_hydrolase_peri1 S 55.3 14 0.00037 17.8 3.2 47 37-83 49-107 (189)
303 PRK09639 RNA polymerase sigma 55.3 17 0.00044 17.3 4.3 46 149-203 112-157 (166)
304 PRK01021 lpxB lipid-A-disaccha 55.1 11 0.00028 18.5 2.6 72 34-107 300-375 (607)
305 cd01834 SGNH_hydrolase_like_2 55.0 18 0.00045 17.3 4.7 52 2-53 3-70 (191)
306 PTZ00314 inosine-5'-monophosph 54.7 6.9 0.00017 19.7 1.5 66 32-98 238-304 (499)
307 PRK09646 RNA polymerase sigma 54.0 18 0.00046 17.2 4.0 48 149-204 142-189 (194)
308 pfam00977 His_biosynth Histidi 54.0 11 0.00028 18.5 2.5 74 26-100 24-101 (229)
309 PRK12520 RNA polymerase sigma 53.6 18 0.00047 17.2 4.2 48 149-204 131-178 (191)
310 PRK11922 RNA polymerase sigma 53.5 19 0.00047 17.1 4.4 47 149-203 149-195 (231)
311 cd00090 HTH_ARSR Arsenical Res 53.5 19 0.00047 17.1 5.4 56 152-223 7-65 (78)
312 COG0735 Fur Fe2+/Zn2+ uptake r 52.9 17 0.00044 17.3 3.3 55 145-204 14-68 (145)
313 pfam02572 CobA_CobO_BtuR ATP:c 52.8 8.6 0.00022 19.1 1.8 44 41-85 93-141 (172)
314 PRK09922 UDP-D-galactose:(gluc 52.4 16 0.0004 17.6 3.1 28 1-28 3-37 (361)
315 pfam01408 GFO_IDH_MocA Oxidore 52.1 20 0.0005 17.0 4.2 96 1-106 1-98 (120)
316 PRK09645 RNA polymerase sigma 51.9 20 0.0005 17.0 4.4 47 149-203 116-162 (171)
317 PRK12542 RNA polymerase sigma 51.8 20 0.0005 17.0 4.2 50 149-206 122-171 (185)
318 PRK00748 1-(5-phosphoribosyl)- 51.6 13 0.00033 18.1 2.5 74 28-102 26-103 (241)
319 PRK06811 RNA polymerase factor 51.6 20 0.00051 17.0 3.9 48 149-204 128-175 (185)
320 cd06294 PBP1_ycjW_transcriptio 51.6 20 0.00051 17.0 6.3 65 11-80 21-91 (270)
321 COG5012 Predicted cobalamin bi 51.3 19 0.00048 17.1 3.3 83 15-99 123-211 (227)
322 TIGR02478 6PF1K_euk 6-phosphof 51.0 12 0.0003 18.4 2.2 64 33-99 488-556 (777)
323 pfam03808 Glyco_tran_WecB Glyc 50.9 20 0.00052 16.9 7.1 55 19-73 43-104 (172)
324 cd06267 PBP1_LacI_sugar_bindin 50.9 20 0.00052 16.9 5.9 68 10-82 15-88 (264)
325 PRK13135 consensus 50.9 14 0.00035 18.0 2.5 78 29-107 26-134 (267)
326 PRK11199 tyrA bifunctional cho 50.8 20 0.00052 16.9 5.2 50 2-53 100-151 (374)
327 pfam03698 UPF0180 Uncharacteri 50.8 21 0.00052 16.9 5.2 66 1-84 1-69 (80)
328 cd05566 PTS_IIB_galactitol PTS 50.6 21 0.00053 16.9 5.6 45 10-56 15-60 (89)
329 PRK05602 RNA polymerase sigma 50.4 21 0.00053 16.8 4.3 47 149-203 128-174 (186)
330 PRK07896 nicotinate-nucleotide 50.3 17 0.00042 17.4 2.9 16 10-25 12-28 (288)
331 cd06270 PBP1_GalS_like Ligand 50.3 21 0.00053 16.8 5.8 66 11-81 16-87 (268)
332 PRK09415 RNA polymerase factor 50.3 21 0.00053 16.8 4.4 47 149-203 127-173 (177)
333 PRK12703 tRNA 2'-O-methylase; 50.1 21 0.00054 16.8 5.1 67 2-73 32-100 (339)
334 PRK08104 consensus 50.0 6.5 0.00017 19.9 0.8 44 5-48 21-68 (212)
335 TIGR03669 urea_ABC_arch urea A 49.9 21 0.00054 16.8 6.6 78 2-81 135-223 (374)
336 PRK04128 1-(5-phosphoribosyl)- 49.8 14 0.00036 17.9 2.5 73 29-102 28-103 (228)
337 PRK13111 trpA tryptophan synth 49.6 13 0.00034 18.0 2.4 47 60-107 74-126 (256)
338 PRK07028 bifunctional hexulose 49.5 6.4 0.00016 19.9 0.7 46 31-76 13-61 (429)
339 PRK03573 transcriptional regul 49.1 22 0.00056 16.7 4.7 48 146-200 25-73 (144)
340 cd04722 TIM_phosphate_binding 48.9 22 0.00056 16.7 3.4 68 32-100 13-90 (200)
341 cd06271 PBP1_AglR_RafR_like Li 48.8 22 0.00056 16.7 6.2 66 10-80 19-90 (268)
342 PRK12537 RNA polymerase sigma 48.8 22 0.00056 16.7 4.2 48 149-204 135-182 (184)
343 PRK09637 RNA polymerase sigma 48.6 22 0.00057 16.7 4.4 48 149-204 106-153 (181)
344 PRK07695 transcriptional regul 48.5 21 0.00053 16.9 3.2 41 64-106 87-127 (202)
345 PRK09462 fur ferric uptake reg 48.5 22 0.00057 16.7 3.4 55 146-204 11-65 (148)
346 cd00046 DEXDc DEAD-like helica 48.3 22 0.00057 16.6 6.2 18 3-20 33-50 (144)
347 cd06280 PBP1_LacI_like_4 Ligan 48.3 22 0.00057 16.6 6.6 66 10-81 15-86 (263)
348 cd00381 IMPDH IMPDH: The catal 48.1 9.3 0.00024 18.9 1.3 66 32-98 94-160 (325)
349 PRK12519 RNA polymerase sigma 47.8 23 0.00058 16.6 4.4 47 149-203 141-187 (194)
350 COG2519 GCD14 tRNA(1-methylade 47.8 15 0.00037 17.8 2.3 22 4-25 123-144 (256)
351 cd06331 PBP1_AmiC_like Type I 47.8 23 0.00058 16.6 5.5 68 2-71 134-212 (333)
352 PRK09590 celB cellobiose phosp 47.8 23 0.00058 16.6 5.2 74 2-80 3-83 (104)
353 pfam09936 DUF2168 Uncharacteri 47.6 15 0.00038 17.7 2.3 74 27-105 84-162 (185)
354 PRK03708 ppnK inorganic polyph 47.5 23 0.00059 16.6 4.6 73 1-78 1-86 (278)
355 PRK12516 RNA polymerase sigma 47.3 23 0.00059 16.6 4.2 48 149-204 119-166 (190)
356 cd06290 PBP1_LacI_like_9 Ligan 47.3 23 0.00059 16.6 6.2 66 11-82 16-87 (265)
357 PRK10307 predicted glycosyl tr 47.1 23 0.0006 16.5 5.1 30 1-30 1-38 (415)
358 COG0159 TrpA Tryptophan syntha 47.1 2.6 6.5E-05 22.3 -1.6 73 31-103 28-131 (265)
359 PRK09643 RNA polymerase sigma 47.1 23 0.0006 16.5 4.1 48 149-204 131-178 (197)
360 cd06295 PBP1_CelR Ligand bindi 46.8 24 0.0006 16.5 6.0 68 10-82 26-97 (275)
361 PRK13140 consensus 46.6 16 0.0004 17.6 2.3 77 30-107 24-131 (257)
362 COG4262 Predicted spermidine s 46.5 24 0.00061 16.5 6.9 119 1-139 314-451 (508)
363 cd04723 HisA_HisF Phosphoribos 46.4 15 0.00037 17.8 2.1 73 27-100 31-106 (233)
364 PRK06843 inositol-5-monophosph 46.1 11 0.00029 18.4 1.5 65 34-99 155-220 (404)
365 TIGR02708 L_lactate_ox L-lacta 46.0 18 0.00045 17.3 2.5 68 30-97 237-309 (368)
366 cd06533 Glyco_transf_WecG_TagA 45.9 24 0.00062 16.4 5.8 37 15-51 37-77 (171)
367 cd06347 PBP1_ABC_ligand_bindin 45.9 25 0.00062 16.4 5.1 68 12-81 152-226 (334)
368 cd06289 PBP1_MalI_like Ligand- 45.7 25 0.00063 16.4 6.2 66 11-81 16-88 (268)
369 PRK07807 inositol-5-monophosph 45.4 13 0.00032 18.1 1.7 67 31-98 226-293 (479)
370 PRK12512 RNA polymerase sigma 45.0 25 0.00064 16.3 4.4 47 149-203 131-177 (184)
371 PRK13122 consensus 44.9 23 0.0006 16.5 3.0 46 60-106 64-115 (242)
372 PRK10966 exonuclease subunit S 44.9 13 0.00034 18.0 1.7 15 190-204 319-333 (402)
373 TIGR03590 PseG pseudaminic aci 44.9 25 0.00065 16.3 5.9 106 1-108 1-123 (280)
374 PRK12921 2-dehydropantoate 2-r 44.7 26 0.00065 16.3 8.6 42 1-44 1-42 (306)
375 COG3355 Predicted transcriptio 44.5 26 0.00066 16.3 5.6 65 148-222 23-87 (126)
376 PRK12524 RNA polymerase sigma 44.4 26 0.00066 16.3 4.0 48 149-204 136-183 (196)
377 PRK12615 galactose-6-phosphate 44.1 26 0.00067 16.3 4.9 31 1-31 1-33 (171)
378 cd06278 PBP1_LacI_like_2 Ligan 44.1 26 0.00067 16.3 5.9 66 11-81 16-86 (266)
379 PRK08621 galactose-6-phosphate 43.9 26 0.00067 16.2 4.6 31 1-31 1-33 (142)
380 TIGR01278 DPOR_BchB light-inde 43.9 26 0.00067 16.2 5.4 64 13-86 347-411 (562)
381 PRK01581 speE spermidine synth 43.9 26 0.00067 16.2 4.9 125 2-146 165-309 (363)
382 COG0698 RpiB Ribose 5-phosphat 43.8 26 0.00067 16.2 6.0 53 1-53 1-67 (151)
383 PRK13133 consensus 43.7 17 0.00045 17.3 2.2 77 30-106 25-136 (267)
384 PRK10909 rsmD 16S rRNA m(2)G96 43.4 27 0.00068 16.2 5.6 41 12-52 39-83 (198)
385 PRK13136 consensus 43.2 23 0.00057 16.6 2.7 75 31-106 23-127 (253)
386 PRK12547 RNA polymerase sigma 43.1 27 0.00069 16.2 4.3 48 149-204 112-159 (164)
387 PRK00312 pcm protein-L-isoaspa 43.1 19 0.00048 17.1 2.3 13 12-24 8-20 (213)
388 PRK13137 consensus 42.9 18 0.00045 17.3 2.1 81 25-106 30-140 (266)
389 cd00452 KDPG_aldolase KDPG and 42.8 9.4 0.00024 18.9 0.7 45 5-49 10-58 (190)
390 TIGR00069 hisD histidinol dehy 42.6 24 0.0006 16.5 2.7 77 12-99 296-372 (435)
391 cd06340 PBP1_ABC_ligand_bindin 42.6 28 0.0007 16.1 6.8 62 13-76 161-229 (347)
392 PRK09642 RNA polymerase sigma 42.5 25 0.00065 16.3 2.9 48 149-204 106-153 (160)
393 cd04737 LOX_like_FMN L-Lactate 42.2 17 0.00044 17.3 2.0 16 85-100 233-248 (351)
394 COG1386 scpB Chromosome segreg 42.1 28 0.00071 16.1 5.5 56 148-221 88-148 (184)
395 cd06322 PBP1_ABC_sugar_binding 42.1 28 0.00072 16.1 6.2 67 11-81 16-89 (267)
396 PRK13129 consensus 42.1 21 0.00054 16.8 2.4 78 29-107 28-136 (267)
397 cd06284 PBP1_LacI_like_6 Ligan 42.1 28 0.00072 16.1 4.9 66 10-82 15-87 (267)
398 TIGR01829 AcAcCoA_reduct aceto 41.9 28 0.00072 16.0 4.2 65 12-78 12-83 (244)
399 COG0489 Mrp ATPases involved i 41.8 28 0.00071 16.1 3.0 12 43-54 85-96 (265)
400 PRK12613 galactose-6-phosphate 41.7 28 0.00073 16.0 4.8 30 1-30 1-32 (141)
401 PRK11303 DNA-binding transcrip 41.5 29 0.00073 16.0 6.7 67 11-81 78-150 (330)
402 PRK08622 galactose-6-phosphate 41.4 29 0.00073 16.0 7.5 111 1-115 1-141 (171)
403 cd04509 PBP1_ABC_transporter_G 41.4 29 0.00073 16.0 6.7 12 70-81 89-100 (299)
404 PRK05703 flhF flagellar biosyn 41.3 29 0.00074 16.0 5.2 29 25-53 3-32 (412)
405 pfam01976 DUF116 Protein of un 41.1 29 0.00074 16.0 5.0 36 15-50 77-112 (158)
406 PRK05298 excinuclease ABC subu 41.1 29 0.00074 16.0 5.9 48 2-49 448-501 (657)
407 cd03332 LMO_FMN L-Lactate 2-mo 41.0 20 0.0005 17.0 2.1 48 154-202 320-368 (383)
408 COG3980 spsG Spore coat polysa 40.9 29 0.00075 16.0 4.8 76 1-80 1-101 (318)
409 pfam01978 TrmB Sugar-specific 40.8 29 0.00075 15.9 6.2 64 147-225 3-66 (68)
410 cd01541 PBP1_AraR Ligand-bindi 40.6 30 0.00076 15.9 6.4 68 11-81 16-92 (273)
411 pfam11496 HDA2-3 Class II hist 40.6 19 0.00048 17.1 1.9 60 42-102 66-143 (278)
412 PRK10537 voltage-gated potassi 40.5 7.3 0.00019 19.6 -0.2 30 148-177 297-326 (356)
413 cd05013 SIS_RpiR RpiR-like pro 40.4 30 0.00076 15.9 4.2 73 9-83 24-98 (139)
414 PRK06101 short chain dehydroge 40.3 30 0.00076 15.9 6.1 56 1-56 1-57 (241)
415 PRK12532 RNA polymerase sigma 40.2 30 0.00077 15.9 4.2 47 150-204 137-183 (195)
416 PRK12534 RNA polymerase sigma 40.2 30 0.00077 15.9 4.4 48 149-204 137-184 (187)
417 TIGR00259 TIGR00259 conserved 39.9 18 0.00045 17.3 1.7 68 31-100 161-230 (261)
418 COG0488 Uup ATPase components 39.8 15 0.00039 17.7 1.4 66 14-80 133-208 (530)
419 pfam01475 FUR Ferric uptake re 39.6 31 0.00078 15.8 3.2 52 148-204 4-55 (120)
420 COG2109 BtuR ATP:corrinoid ade 39.6 17 0.00043 17.4 1.6 14 38-51 116-129 (198)
421 PRK13597 imidazole glycerol ph 39.6 31 0.00078 15.8 3.1 76 26-102 26-105 (252)
422 pfam01135 PCMT Protein-L-isoas 39.5 31 0.00079 15.8 3.2 13 13-25 3-15 (205)
423 PRK09047 RNA polymerase factor 39.4 31 0.00079 15.8 3.6 48 149-204 106-153 (161)
424 PHA02518 ParA-like protein; Pr 39.3 18 0.00045 17.3 1.6 63 1-68 30-98 (211)
425 PRK10742 putative methyltransf 39.3 31 0.00079 15.8 5.2 46 146-200 178-223 (250)
426 COG1303 Uncharacterized protei 38.9 31 0.0008 15.8 6.0 74 2-78 34-110 (179)
427 PRK03094 hypothetical protein; 38.6 32 0.00081 15.7 5.3 65 1-83 1-68 (80)
428 COG0518 GuaA GMP synthase - Gl 38.6 32 0.00081 15.7 2.9 51 1-51 2-52 (198)
429 PRK01033 imidazole glycerol ph 38.4 27 0.00069 16.2 2.5 73 28-101 27-103 (253)
430 pfam06555 consensus 38.3 32 0.00082 15.7 4.4 32 15-46 2-33 (200)
431 cd06349 PBP1_ABC_ligand_bindin 38.2 32 0.00082 15.7 7.0 69 11-81 150-225 (340)
432 PRK12541 RNA polymerase sigma 38.0 33 0.00083 15.7 4.3 47 149-203 112-158 (161)
433 PRK00082 hrcA heat-inducible t 37.8 33 0.00084 15.7 3.1 20 70-89 146-165 (339)
434 TIGR01889 Staph_reg_Sar staphy 37.8 33 0.00084 15.7 3.7 50 146-200 19-73 (112)
435 cd06275 PBP1_PurR Ligand-bindi 37.6 33 0.00084 15.6 5.2 68 10-81 15-88 (269)
436 PRK10446 ribosomal protein S6 37.5 33 0.00085 15.6 3.0 53 1-54 1-67 (300)
437 PRK11557 putative DNA-binding 37.3 33 0.00085 15.6 4.7 69 11-81 145-215 (282)
438 pfam04852 DUF640 Protein of un 37.2 31 0.0008 15.8 2.7 27 174-208 87-113 (133)
439 PRK12376 putative translaldola 37.2 34 0.00086 15.6 5.1 74 25-103 63-146 (238)
440 cd06277 PBP1_LacI_like_1 Ligan 37.1 34 0.00086 15.6 5.9 67 10-82 18-90 (268)
441 COG0556 UvrB Helicase subunit 37.0 34 0.00086 15.6 6.0 48 2-49 448-501 (663)
442 COG0702 Predicted nucleoside-d 37.0 34 0.00086 15.6 4.7 54 1-55 1-54 (275)
443 cd06272 PBP1_hexuronate_repres 36.9 34 0.00086 15.6 5.9 66 10-80 15-82 (261)
444 KOG1601 consensus 36.9 22 0.00057 16.7 1.8 66 43-108 62-129 (340)
445 TIGR00707 argD acetylornithine 36.9 26 0.00065 16.3 2.2 198 9-224 73-347 (402)
446 PRK12513 RNA polymerase sigma 36.8 34 0.00087 15.6 4.5 48 149-204 139-186 (194)
447 cd00223 TOPRIM_TopoIIB_SPO TOP 36.4 16 0.00042 17.5 1.1 124 2-166 2-127 (160)
448 PRK10870 transcriptional repre 36.4 35 0.00088 15.5 4.8 50 148-203 115-164 (176)
449 PRK05884 short chain dehydroge 36.2 35 0.00089 15.5 7.7 53 1-53 1-54 (223)
450 PRK09641 RNA polymerase sigma 36.0 35 0.00089 15.5 4.1 48 149-204 136-183 (187)
451 COG5340 Predicted transcriptio 36.0 35 0.00089 15.5 3.3 18 145-162 152-169 (269)
452 cd04962 GT1_like_5 This family 35.9 35 0.0009 15.5 3.9 31 1-31 1-36 (371)
453 cd06330 PBP1_Arsenic_SBP_like 35.9 35 0.0009 15.5 5.1 67 2-70 140-219 (346)
454 PRK13849 putative crown gall t 35.9 35 0.0009 15.5 4.2 52 2-53 32-92 (231)
455 cd06171 Sigma70_r4 Sigma70, re 35.7 35 0.0009 15.5 3.9 46 149-202 10-55 (55)
456 cd02808 GltS_FMN Glutamate syn 35.5 17 0.00044 17.3 1.1 70 30-99 223-312 (392)
457 cd01574 PBP1_LacI Ligand-bindi 35.4 36 0.00091 15.4 6.4 66 11-81 16-88 (264)
458 PRK09401 reverse gyrase; Revie 35.1 36 0.00093 15.4 4.3 40 10-49 340-380 (1176)
459 cd05565 PTS_IIB_lactose PTS_II 35.0 36 0.00093 15.4 6.5 74 1-81 1-81 (99)
460 cd04732 HisA HisA. Phosphorib 34.9 37 0.00093 15.4 2.7 72 28-100 26-101 (234)
461 cd02922 FCB2_FMN Flavocytochro 34.6 28 0.0007 16.1 2.0 44 61-106 203-246 (344)
462 cd01545 PBP1_SalR Ligand-bindi 34.4 37 0.00095 15.3 6.3 68 10-81 15-89 (270)
463 PRK02145 consensus 34.4 35 0.00089 15.5 2.5 76 26-102 26-105 (257)
464 cd03795 GT1_like_4 This family 34.3 37 0.00095 15.3 2.8 29 2-30 1-37 (357)
465 TIGR01929 menB naphthoate synt 34.3 18 0.00045 17.3 1.0 131 69-203 45-235 (278)
466 cd01573 modD_like ModD; Quinol 34.2 35 0.0009 15.5 2.5 11 168-178 190-200 (272)
467 PRK13585 1-(5-phosphoribosyl)- 34.2 37 0.00096 15.3 2.8 72 29-101 29-104 (240)
468 PRK02290 3-dehydroquinate synt 33.9 30 0.00076 15.9 2.1 34 77-110 122-155 (347)
469 PRK13931 stationary phase surv 33.9 27 0.00068 16.2 1.9 79 1-79 1-128 (261)
470 COG0514 RecQ Superfamily II DN 33.8 38 0.00097 15.3 3.1 43 66-108 160-205 (590)
471 cd01536 PBP1_ABC_sugar_binding 33.7 38 0.00098 15.3 5.8 67 11-81 16-89 (267)
472 PRK00652 lpxK tetraacyldisacch 33.6 38 0.00098 15.3 5.7 48 23-80 120-167 (334)
473 PRK00885 phosphoribosylamine-- 33.4 39 0.00098 15.2 6.7 22 29-50 122-143 (424)
474 PRK04914 ATP-dependent helicas 33.4 39 0.00099 15.2 5.8 80 2-83 200-315 (955)
475 PRK13306 ulaD 3-keto-L-gulonat 33.4 11 0.00029 18.4 -0.1 79 30-108 12-94 (216)
476 PRK12533 RNA polymerase sigma 33.3 39 0.00099 15.2 4.2 48 149-204 137-184 (217)
477 PRK02747 consensus 33.3 37 0.00095 15.3 2.5 86 26-112 25-116 (257)
478 PRK12543 RNA polymerase sigma 33.2 39 0.00099 15.2 4.5 46 149-202 129-174 (190)
479 cd06279 PBP1_LacI_like_3 Ligan 33.2 39 0.00099 15.2 5.6 65 11-80 21-87 (283)
480 TIGR02397 dnaX_nterm DNA polym 33.2 12 0.00031 18.2 0.0 174 26-202 89-295 (363)
481 PRK11512 DNA-binding transcrip 33.1 39 0.001 15.2 4.4 48 146-200 34-81 (144)
482 cd03109 DTBS Dethiobiotin synt 33.1 39 0.001 15.2 4.1 60 11-81 14-77 (134)
483 PRK12511 RNA polymerase sigma 33.1 39 0.001 15.2 3.0 48 149-204 111-158 (182)
484 PRK09638 RNA polymerase sigma 33.1 39 0.001 15.2 4.5 48 149-204 127-174 (177)
485 PRK06986 fliA flagellar biosyn 33.0 39 0.001 15.2 3.0 50 149-202 183-232 (234)
486 PRK00830 consensus 32.9 33 0.00085 15.6 2.2 75 26-101 29-107 (273)
487 pfam00448 SRP54 SRP54-type pro 32.8 40 0.001 15.2 6.8 83 2-86 31-129 (196)
488 COG1154 Dxs Deoxyxylulose-5-ph 32.8 40 0.001 15.2 4.4 54 173-227 237-292 (627)
489 PRK12518 RNA polymerase sigma 32.8 40 0.001 15.2 4.4 48 149-204 120-167 (175)
490 cd06341 PBP1_ABC_ligand_bindin 32.7 40 0.001 15.2 6.4 77 3-81 136-223 (341)
491 cd06281 PBP1_LacI_like_5 Ligan 32.5 40 0.001 15.1 6.4 66 11-80 16-87 (269)
492 cd06293 PBP1_LacI_like_11 Liga 32.5 40 0.001 15.1 4.6 66 11-81 16-87 (269)
493 PRK09644 RNA polymerase sigma 32.4 40 0.001 15.1 4.1 47 149-203 108-154 (165)
494 PRK13305 sgbH 3-keto-L-gulonat 32.3 14 0.00035 17.9 0.2 65 32-96 14-82 (220)
495 pfam07015 VirC1 VirC1 protein. 32.3 40 0.001 15.1 4.5 51 2-52 32-91 (231)
496 PRK05571 ribose-5-phosphate is 32.2 40 0.001 15.1 4.9 32 1-32 1-34 (149)
497 PRK13944 protein-L-isoaspartat 32.1 41 0.001 15.1 3.2 57 2-58 99-156 (205)
498 TIGR00078 nadC nicotinate-nucl 31.9 41 0.001 15.1 4.6 83 12-99 172-258 (276)
499 cd01572 QPRTase Quinolinate ph 31.8 41 0.001 15.1 4.3 88 3-96 155-249 (268)
500 PRK09189 uroporphyrinogen-III 31.7 41 0.001 15.1 3.8 30 1-31 1-30 (237)
No 1
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=100.00 E-value=0 Score=484.46 Aligned_cols=220 Identities=32% Similarity=0.551 Sum_probs=211.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC--CCCEECCC
Q ss_conf 5999869989999999999988989999999899999998579947883114987433431112222322--33100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI--STPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~--~~pII~ls 79 (236)
+|||||||..++++|+..|+..||+|..|.|+++|...+++..||+|+|||+||+.+|+++|++||.... ++||||||
T Consensus 4 ~iLvVEDE~AirEl~~~~L~~~gy~v~~A~d~~~A~~~~~E~~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPIIMLT 83 (226)
T TIGR02154 4 RILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERLPDLILLDWMLPGTSGIELARRLRREPETRAIPIIMLT 83 (226)
T ss_pred EEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 25677082689999999841689469980797999999860799889961478997569999873476331488817740
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3210000011232210111223322211111222222222222-222222222222222222233333222464116889
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~-~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL 158 (236)
|+++++++++||+.||||||+|||+++||+|||+|+|||.++. .+..+.+|++.+|+.++.|..+|++++|+|+||.||
T Consensus 84 ARGeE~Drv~GLetGADDYvtKPFSp~EL~ARikAVLRR~~P~~~~~~i~~~~l~lD~~~HRV~~~~~~~~lGPTEfRLL 163 (226)
T TIGR02154 84 ARGEEEDRVRGLETGADDYVTKPFSPRELLARIKAVLRRIRPELSDEVIEVGDLELDPVAHRVKRGGQPLELGPTEFRLL 163 (226)
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCHHHHCCEEEECCEEECCCCCEEEECCEECCCCCHHHHHH
T ss_conf 55560001131136887503678865889999999983167124202011034777510240431360214687047889
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEC
Q ss_conf 9987189973789999998718877777530366789998851106788843888878202645
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~ 222 (236)
.+||+||++|+||+||+++|||.+.+++.|||||||.||||.|+. .+..++|+||||.||+|.
T Consensus 164 ~FFM~HPeRV~SReQLLD~VWG~dvyVE~RTVDVHIRRLRKaL~~-~g~~~~vqTVRGaGYrfs 226 (226)
T TIGR02154 164 HFFMTHPERVYSREQLLDRVWGRDVYVEERTVDVHIRRLRKALEP-GGLEDLVQTVRGAGYRFS 226 (226)
T ss_pred HHHHHCCCCEEEHHHHHHHHCCCCEEEECCCEEEEECCHHHHCCC-CCCCCCEEEECCCCCCCC
T ss_conf 998623773440423201105894325135000322000542387-888871565104662589
No 2
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=100.00 E-value=0 Score=425.05 Aligned_cols=225 Identities=32% Similarity=0.511 Sum_probs=215.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
+|||+||||+.+++.+..+|+..||.|..+.|+.+|++.+..+.||++|+|++||++||+++|+.||+.++.+||||+|+
T Consensus 6 ~kILiVEDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~DlvilDi~lp~~dG~~l~~~iR~~~~~~pII~LTa 85 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTA 85 (239)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 78999909999999999999988999999899999999997589989998789988887346777875057877899946
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 210000011232210111223322211111222222222222-------2222222222222222222333332224641
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK 153 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~-------~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~ 153 (236)
+++.++++.||++||||||+|||+++||++||++++||.... ....+.+|++.+|+.+++++++|+++.||++
T Consensus 86 ~~~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allrR~~~~~~~~~~~~~~~~~~g~l~ld~~~~~v~~~~~~i~LT~~ 165 (239)
T PRK09468 86 KGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRQAPELPGAPSQEEEVIAFGEFSLNLGTRELFRGDEPIPLTTG 165 (239)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHH
T ss_conf 67878999999769868855899989999999999863234456776677876999999999777999989998876789
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCC
Q ss_conf 168899987189973789999998718877777530366789998851106788843888878202645688
Q gi|254780893|r 154 EYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 (236)
Q Consensus 154 E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~~ 225 (236)
||.||.+|++|+|++|||++|++.+||.+..+++|+||+||+|||+||+..++.+.+|+||||+||+|.++.
T Consensus 166 E~~LL~~L~~~~g~vvsre~Ll~~vwg~~~~~~~rtidv~I~rLRkKl~~~~~~~~~I~TvrG~GY~f~~dg 237 (239)
T PRK09468 166 EFAVLKALVRHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRLIEPDPAHPRYIQTVWGLGYVFVPDG 237 (239)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEECCCC
T ss_conf 999999999779966769999999629887888483999999999975207899984998758086874589
No 3
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=100.00 E-value=0 Score=421.80 Aligned_cols=226 Identities=26% Similarity=0.378 Sum_probs=213.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
.|||+||||..++..+..+|+..||+|..+.+|.+|+..+..+.||+||+|++||++||+++|++||+.. .+||||+|+
T Consensus 2 ~kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~LP~~dG~~l~~~iR~~~-~~PiI~lta 80 (240)
T PRK10701 2 NTIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRPKW-SGPIVLLTS 80 (240)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCC-CCCEEEEEE
T ss_conf 9899997999999999999988799999989999999998617999999928997678878763110258-987899940
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2100000112322101112233222111112222222222222------------2222222222222222223333322
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA------------QSLIVTGDLSVNLDAKTVEVQGHRI 148 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~------------~~~~~~g~~~~d~~~~~v~~~g~~i 148 (236)
.++..+++.||++||||||+|||+++||++||++++||..... ...+.+|++.+|..+++++.+|+++
T Consensus 81 ~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lrr~~~~~~~~~~~~~~~~~~~~~~~g~l~ld~~~~~v~~~g~~i 160 (240)
T PRK10701 81 LDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATQAKGLQETSLTPYKALHFGTLTIDPINRVVTLAGEEI 160 (240)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEE
T ss_conf 57578899999768877641799879999999999965325444322234555766438987799988889999999998
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCC
Q ss_conf 2464116889998718997378999999871887777753036678999885110678884388887820264568875
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~~~~ 227 (236)
.||++||.||.+|++|+|++|||++|++.|||.+..+++|+||+||+|||+||+..+..+.+|+||||.||+|.++||+
T Consensus 161 ~LT~~E~~lL~~L~~~~g~vvsre~L~~~vwg~~~~~~~rtvdv~I~rLRkKl~~~~~~~~~I~TvrG~GY~f~p~a~~ 239 (240)
T PRK10701 161 SLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 (240)
T ss_pred ECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCC
T ss_conf 7678999999999977998738999999853988788867899999999998752889998399981818518577557
No 4
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=100.00 E-value=0 Score=422.22 Aligned_cols=223 Identities=34% Similarity=0.587 Sum_probs=211.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
||||+||||..+++.+..+|+..||.|..|.||.+|+..+....||++|+|++||++||+++|+.||+.++.+||||+|+
T Consensus 1 MkILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lta 80 (226)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA 80 (226)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 98999939999999999999878999999899999999985189999998899999987204356776167960999944
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 210000011232210111223322211111222222222222-2222222222222222222333332224641168899
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIE 159 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~-~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~ 159 (236)
+++.++++.||++|||||++|||+++||++||++++||.... .+..+.+|++.+|+.+++++.+|+++.||++||.||.
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~~~~~~~~~~~~~~l~~d~~~~~v~~~g~~v~LT~~E~~lL~ 160 (226)
T PRK09836 81 LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLE 160 (226)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCCEEEEECCEEEECCHHHHHHHH
T ss_conf 58988999999769968863687679999999999662666677650798779985141189889999856889999999
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 98718997378999999871887777753036678999885110678884388887820264568
Q gi|254780893|r 160 LLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 160 ~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
+|++|+|++|||++|++.||+.+..+++|++|+||+|||+||+.. +.+.+|+||||.||+|+.+
T Consensus 161 ~L~~~~g~vvsre~l~~~vw~~~~~~~~~~vdv~I~rLR~Kl~~~-~~~~~I~TvrG~GY~l~~p 224 (226)
T PRK09836 161 FFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEVP 224 (226)
T ss_pred HHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCEEEEECCCCEEEECC
T ss_conf 998689964879999999628887888588999999999985788-9998399966815698448
No 5
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=100.00 E-value=0 Score=419.04 Aligned_cols=218 Identities=34% Similarity=0.574 Sum_probs=210.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
||||+||||+.++..+..+|+..||+|.++.+|.+|++.+..+.||++|+|++||++||+++|++||+.++.+||||+|+
T Consensus 1 mkILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~~~~~PII~lta 80 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA 80 (219)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf 98999938999999999999987999999899999999986289699999799999985631010465278887899806
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 21000001123221011122332221111122222222222222222222222222222223333322246411688999
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~ 160 (236)
+++.++++.||++||||||.|||+++||++||++++||........+.+|++.+|+.+++++++|+.+.||++||.||.+
T Consensus 81 ~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr~~~~~~~~~~~g~~~ld~~~~~~~~~g~~i~LT~~E~~lL~~ 160 (219)
T PRK10336 81 RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL 160 (219)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHEEEECCCEEEEECHHHHHHHHH
T ss_conf 89999999999769988868897679999999999611546666431027789831362996499799837899999999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECC
Q ss_conf 871899737899999987188777775303667899988511067888438888782026456
Q gi|254780893|r 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 (236)
Q Consensus 161 L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~ 223 (236)
|++|+|++|||++|++.+|+.+..+++|+|++||+|||+||+. .+|+||||.||+|.+
T Consensus 161 L~~~~g~vvsre~l~~~vw~~~~~~~~~~vdv~I~rLRkKl~~-----~~I~TvrG~GY~l~e 218 (219)
T PRK10336 161 LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGE 218 (219)
T ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEECCCCEEECC
T ss_conf 9968996397999999962889888858199999999976798-----858981575868662
No 6
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=100.00 E-value=0 Score=419.29 Aligned_cols=223 Identities=31% Similarity=0.515 Sum_probs=212.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
+|||+||||..++..+..+|+..||.|..+.|+++|++.+..+.||+||+|++||++||+++|+.||+..+.+||||+|+
T Consensus 4 ~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~~~~~pII~lta 83 (229)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAFHPALPVIFLTA 83 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999969999999999999988999999899999999997189989997388999876889999997089972999836
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2100000112322101112233222111112222222222222---2222222222222222223333322246411688
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~---~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~l 157 (236)
+++.++++.||++|||||+.|||+++||++||++++||..... .....+|++.+|..+++++++|++++||++||.|
T Consensus 84 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~~~~~ld~~~~~v~~~g~~i~LT~~E~~L 163 (229)
T PRK11083 84 RSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAAPSPVIRIAGHFELDEPGARISYFGTPLSLTRYEFLL 163 (229)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCEEEECCEECCCCHHHHHH
T ss_conf 78989999999759987730874289999999999976435677776325647889987861999999954599999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECC
Q ss_conf 999871899737899999987188777775303667899988511067888438888782026456
Q gi|254780893|r 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 (236)
Q Consensus 158 L~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~ 223 (236)
|.+|++|+|++|||++|++.||+.+..+.+|+||+||+|||+||+..+..+.+|+||||.||+|+|
T Consensus 164 L~~L~~~~g~vvsr~~L~~~vw~~~~~~~~rtidv~I~rLR~KL~~~~~~~~~I~TvrG~GY~l~P 229 (229)
T PRK11083 164 LKTLLLSPGRVFSRQQLMDIVWEDAQDSYDRTVDTHIKTLRAKLRAINPDLSPIRTHRGLGYSLRP 229 (229)
T ss_pred HHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECC
T ss_conf 999986799409699999985599888884669999999999875268999859997896569739
No 7
>CHL00148 orf27 Ycf27; Reviewed
Probab=100.00 E-value=0 Score=416.88 Aligned_cols=223 Identities=29% Similarity=0.547 Sum_probs=209.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
+|||+||||..++..+..+|+..||+|..+.++.+|+..+..+.||+||+|++||++||+++|+.||+.. .+||||+|+
T Consensus 7 ~kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi~LP~~dG~~l~~~iR~~~-~~PII~LTa 85 (240)
T CHL00148 7 EKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIRKES-DVPIIMLTA 85 (240)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCC-CCCEEEEEC
T ss_conf 8299993989999999999997899999989999999999747999999979999888663054140379-954899816
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 210000011232210111223322211111222222222222-------2222222222222222222333332224641
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK 153 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~-------~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~ 153 (236)
+++.++++.||++||||||+|||+++||++||++++||.... ....+.+|++.+|..+++++.+|+++.||++
T Consensus 86 ~~~~~d~v~gl~~GADDYi~KPf~~~EL~aRi~allrr~~~~~~~~~~~~~~~l~~g~l~~d~~~~~v~~~g~~i~LT~~ 165 (240)
T CHL00148 86 LGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRVNKISATSGPKNSGIIRIGFLEIDTNKKQVYKNNERIRLTGM 165 (240)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHH
T ss_conf 78989999999769978952784479999999999866303445566777865998789998788999989999865899
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 168899987189973789999998718877--77753036678999885110678884388887820264568
Q gi|254780893|r 154 EYQMIELLSLRKNTTLTKEMFLNHLYDGRD--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 154 E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~--~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
||.||.+|++|+|++|||++|++.|||.+. ..++|+||+||+|||+||+..++.+.+|+||||.||+|++.
T Consensus 166 E~~lL~~L~~~~g~vvsre~L~~~vWg~~~~~~~~~r~vdv~I~rLRkKl~~~~~~~~~I~TvrG~GY~~~~~ 238 (240)
T CHL00148 166 EFSLLELLISESGEIFSRATILKEVWGYTPERHIDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQRI 238 (240)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEE
T ss_conf 9999999996799749699999997288876678755799999999997410789998699978978789660
No 8
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=100.00 E-value=0 Score=417.80 Aligned_cols=221 Identities=32% Similarity=0.509 Sum_probs=209.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
||||+||||+.+++.+...|+..||+|..|.||.+|+..+..+.||++|+|++||++||+++|+.||+. ..+||||+|+
T Consensus 1 MkILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~-~~~pII~lta 79 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLTA 79 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEEC
T ss_conf 989999698999999999999889999998999999999852899999984999873689999999856-8864899956
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 21000001123221011122332221111122222222222222222222222222222223333322246411688999
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~ 160 (236)
+++.++++.||++|||||++|||+++||++||++++||..+. ...+.+|++.+|..+++++.+|+++.||++||.||.+
T Consensus 80 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr~~~~-~~~~~~~~l~ld~~~~~v~~~~~~i~LT~~E~~LL~~ 158 (223)
T PRK11517 80 RDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWL 158 (223)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCC-CCCEEECCEEEEHHHEEEEECCEEECCCHHHHHHHHH
T ss_conf 556578999998398776208977899999999996414577-8717988789800131896299898299999999999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 8718997378999999871887777753036678999885110678884388887820264568
Q gi|254780893|r 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 161 L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
|++|+|++|||++|++.|||.+..+++|++|+||+|||+||+ .++.+.+|+||||.||+|...
T Consensus 159 L~~~~g~vvsre~l~~~vwg~~~~~~~~~idv~I~rLRkKl~-~~~~~~~I~TvrG~GYrl~a~ 221 (223)
T PRK11517 159 LASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAV 221 (223)
T ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCEEEECCCCEEEEEC
T ss_conf 986899859899999996298878885879999999999857-889999589766816699531
No 9
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=100.00 E-value=0 Score=414.52 Aligned_cols=222 Identities=30% Similarity=0.490 Sum_probs=211.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
.|||+||||..++..+..+|+..||+|..+.++++|+..+..+.||++|+|++||++||+++|+.||+.+ .+||||+|+
T Consensus 2 ~~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~iR~~~-~~pII~lta 80 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWS-AIPVIVLSA 80 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECCC-CCCEEEEEC
T ss_conf 9899997989999999999998899999979999999986117998999807888888763310001279-987899954
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 210000011232210111223322211111222222222222--222222222222222222233333222464116889
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~--~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL 158 (236)
+++.++++.||++||||||.|||+++||++||++++||.... ....+.+|++.+|..+++++.+|+++.||++||.||
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr~~~~~~~~~~~~~~~l~~d~~~~~v~~~g~~i~LT~~E~~lL 160 (225)
T PRK10529 81 RSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATPAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLL 160 (225)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCEEEECCCCCCCCHHHHHHH
T ss_conf 68989999999769876540785459999999999714037888786499999999903399999996131366899999
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECC
Q ss_conf 99871899737899999987188777775303667899988511067888438888782026456
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~ 223 (236)
.+|++|+|++|||++|++.|||.+...++|++|+||+|||+||+..++.+.+|+||||+||+|.|
T Consensus 161 ~~L~~~~g~vvsre~L~~~vw~~~~~~~~~~idv~I~rLRkKl~~~~~~~~~I~TvrG~GYr~~P 225 (225)
T PRK10529 161 AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPTRPRHFITETGIGYRFMP 225 (225)
T ss_pred HHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
T ss_conf 99997799619699999996499989886879999999999720078999828956781656659
No 10
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=100.00 E-value=0 Score=414.60 Aligned_cols=222 Identities=29% Similarity=0.479 Sum_probs=209.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC--CCCCEECC
Q ss_conf 9599986998999999999998898999999989999999857994788311498743343111222232--23310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK--ISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~--~~~pII~l 78 (236)
.|||+||||+.++..+..+|+..||+|..|.|+++|+..+..+.||++|+|++||++||+++|++||+.. +++||||+
T Consensus 3 ~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII~l 82 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 82 (229)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 71999959999999999999977999999899999999985289989999789988763358788775024689758999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 33210000011232210111223322211111222222222222-22222222222222222223333322246411688
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~-~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~l 157 (236)
|+.++.++++.||++||||||+|||+++||+|||++++||..+. .+..+.+|++++|+.++++..+|+++.||++||.|
T Consensus 83 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~l~~d~~~~~v~~~~~~i~LT~~E~~L 162 (229)
T PRK10161 83 TARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKL 162 (229)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEEEEEEEEECCEEEECCHHHHHH
T ss_conf 55666577999987698765208999899999999997123777765432677789861015999999998706899999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECC
Q ss_conf 999871899737899999987188777775303667899988511067888438888782026456
Q gi|254780893|r 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 (236)
Q Consensus 158 L~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~ 223 (236)
|.+|++|+|++|||++|+++|||.+..+++|++|+||+|||+||+.. +.+.+|+||||.||+|..
T Consensus 163 L~~L~~~~g~vvsr~~L~~~vwg~~~~~~~rtldv~I~rLRkKl~~~-~~~~~I~TvrG~GYr~~~ 227 (229)
T PRK10161 163 LHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG-GHDRMVQTVRGTGYRFST 227 (229)
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCEEEECCCCEEECC
T ss_conf 99999779987979999998639998988473999999999974567-999819986584740571
No 11
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=100.00 E-value=0 Score=406.98 Aligned_cols=221 Identities=36% Similarity=0.600 Sum_probs=207.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
|||+||||..++..++.+|+..||+|..|.||.+|+..+. +.||++|+|++||++||+++|+.||+. ..+||||+|++
T Consensus 3 kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PII~lta~ 80 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQT-HQTPVIMLTAR 80 (232)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEECC-CCCCEEEEECC
T ss_conf 8999969899999999999888999999899999999964-898999991899988867230124407-88878998055
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10000011232210111223322211111222222222222--------2222222222222222222333332224641
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK 153 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~--------~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~ 153 (236)
++.++++.||++||||||+|||+++||++||++++||.... ....+.++++.+|+.+++++++|+++.||++
T Consensus 81 ~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~~~~~~~~~~~~~~~~~~~~l~ld~~~~~~~~~~~~i~LT~~ 160 (232)
T PRK10955 81 GSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGT 160 (232)
T ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHH
T ss_conf 67688999997697576338999899999999997615431001235678856998989998787799999999966899
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 16889998718997378999999871887777753036678999885110678884388887820264568
Q gi|254780893|r 154 EYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 154 E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
||.||.+|++|+|++|||++|++.+||.+..+++|+||+||+|||+||...+..+.+|+||||.||+|...
T Consensus 161 E~~lL~~L~~~~g~vvsre~L~~~vwg~~~~~~~rtidv~I~rLRkKL~~~~~~~~~I~TvrG~GY~lvs~ 231 (232)
T PRK10955 161 EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 (232)
T ss_pred HHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEC
T ss_conf 99999999978995097999999971889888858299999999995411689998199845706599867
No 12
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=100.00 E-value=0 Score=418.58 Aligned_cols=218 Identities=35% Similarity=0.586 Sum_probs=212.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 99986998999999999998898999999989999999857994788311498743343111222232233100133321
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
||+|||++..++.+++-|.+.||.|++++||.++|.++.+..||+||||++||++||+++++.||+...+.||+||||++
T Consensus 1 iLvvEDeqkT~~YlqqGLsE~GYvvD~~~nG~DGL~lA~~~~Y~liILDvmLPG~DGW~vl~~LR~~~~~~PVl~LTA~D 80 (219)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDIASNGRDGLHLAEKDDYDLIILDVMLPGMDGWQVLKALRRSGKETPVLFLTARD 80 (219)
T ss_pred CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 96763086026765305201234798877686247543688830899632588950689999984078987348883378
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 0000011232210111223322211111222222222222222-222222222222222233333222464116889998
Q gi|254780893|r 83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161 (236)
Q Consensus 83 ~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~-~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L 161 (236)
+..++++||++|||||+.|||++.||+||||++|||++..+.. .+.+.++.+|.-+++|+.++..|+||.|||.||++|
T Consensus 81 ~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~~~~~~~evl~i~DL~~D~~~~~v~R~~~~I~LT~kEF~LL~lL 160 (219)
T TIGR01387 81 SVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRSESLESTEVLEIADLELDVVRRRVFRGSKRIELTRKEFALLELL 160 (219)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCEECCCEEEEEECCEEEEECHHHHHHHHHH
T ss_conf 84543530114786541378776037999998767752037676268605575121038875682687303678999999
Q ss_pred HHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEE
Q ss_conf 718997378999999871887777753036678999885110678884388887820264
Q gi|254780893|r 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 (236)
Q Consensus 162 ~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l 221 (236)
+++.|+|+||..|...||+-|+.+++|+|||-|+|||.|. ++|..+++|+||||+||.|
T Consensus 161 ~~r~GEvL~Rt~I~S~vW~~NFDsDTNvvdVAirRLRaKv-DD~f~~KLIhTvRG~GYvL 219 (219)
T TIGR01387 161 MRRTGEVLPRTLIASLVWGMNFDSDTNVVDVAIRRLRAKV-DDPFEEKLIHTVRGMGYVL 219 (219)
T ss_pred HHHCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC-CCCCCCCCEEEECCCCCCC
T ss_conf 9748830220343343347625678877866553300425-7957755225541422369
No 13
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=100.00 E-value=0 Score=404.47 Aligned_cols=222 Identities=32% Similarity=0.530 Sum_probs=213.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
||||+||||..++..+...|+..||+|..|.++.+|++.+..+.||++|+|++||++||+++|++||+.++.+||||+|+
T Consensus 1 mkILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lta 80 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (223)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEEC
T ss_conf 98999959899999999999978999999899999999997579989999799989886400120110489876899944
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 21000001123221011122332221111122222222222222222222222222222223333322246411688999
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~ 160 (236)
+++.++++.||++|||||++|||+.+||.+||++++||........+.+|++.+|..+++++.+|++++||++||.||.+
T Consensus 81 ~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr~~~~~~~~~~~~~~~~d~~~~~~~~~g~~i~LT~~E~~LL~~ 160 (223)
T PRK10816 81 RESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET 160 (223)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEHHHCEEEECCEEEEECHHHHHHHHH
T ss_conf 45677899999869988641897778999999999665557877618878868711005898799899706899999999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECC
Q ss_conf 871899737899999987188777775303667899988511067888438888782026456
Q gi|254780893|r 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 (236)
Q Consensus 161 L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~ 223 (236)
|++|+|+++||++|++.|||.++.+++|++++||+|||+||...+ ...+|+||||.||+|+-
T Consensus 161 L~~~~~~vvsre~l~~~vw~~~~~~~~~sld~~I~rLRkKl~~~~-~~~~I~tvrG~GY~~~~ 222 (223)
T PRK10816 161 LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFEL 222 (223)
T ss_pred HHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCEEEECCCCEEEEE
T ss_conf 998799238399999985499878886779999999999743358-99818997895679875
No 14
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=100.00 E-value=0 Score=404.83 Aligned_cols=220 Identities=35% Similarity=0.607 Sum_probs=212.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
||||+||||+.++..+..+|+..||+|..|.++.+|++.+...+||++|+|++||++||+++|+++|+.++.+||||+|+
T Consensus 1 mkILlVEDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~DlvilDi~lp~~~G~~l~~~ir~~~~~~pII~lt~ 80 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTA 80 (222)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEC
T ss_conf 97999928899999999999978999999899999999997489989999688899862268999983489988999821
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 21000001123221011122332221111122222222222222222222222222222223333322246411688999
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~ 160 (236)
+++.++++.|+++||||||.|||+++||++||++++||.+...+..+.+|++.+|..+++++++|+++.||++||.||.+
T Consensus 81 ~~~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~LT~~E~~lL~~ 160 (222)
T PRK10643 81 RDTLEDRIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQGESELQVGNLTLNLGRQQVWLDGQELILTPKEYALLSR 160 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEECCEEECCCCCEEEECCEEEEECHHHHHHHHH
T ss_conf 03678899999759977643887689999999999703236677732677689810006898899888708799999999
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCC
Q ss_conf 87189973789999998718877777530366789998851106788843888878202645688
Q gi|254780893|r 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 (236)
Q Consensus 161 L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~~ 225 (236)
|++|+|++|||++|++.||+.+..+++|+||+||+|||+||.. ..|+||||.||+|..+.
T Consensus 161 L~~~~g~vvsre~L~~~v~~~~~~~~~~~ld~~I~rLRkKl~~-----~~I~tvrG~GY~l~~~~ 220 (222)
T PRK10643 161 LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGK-----DRIRTVRGFGYMLVANE 220 (222)
T ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC-----CCEEEECCCCEEEEECC
T ss_conf 9967999868999999960878888867699999999976699-----85797677376980178
No 15
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=0 Score=404.58 Aligned_cols=223 Identities=40% Similarity=0.666 Sum_probs=211.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC-CCCCCEECCC
Q ss_conf 959998699899999999999889899999998999999985799478831149874334311122223-2233100133
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA-KISTPVCILS 79 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~-~~~~pII~ls 79 (236)
||||+||||+.++..+..+|+..||.|..+.++.+++..+... ||++|+|++||++||+++|++||+. ...+||||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lt 79 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLT 79 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9899991888999999999987597899978989999997269-999999889998568999999985168999889996
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 321000001123221011122332221111122222222222----2222222222222222222233333222464116
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEY 155 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~----~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~ 155 (236)
+.++.++++.+|++|||||++|||+++||+|||++++||... .....+.+|++.+|..+++++++|..+.||++||
T Consensus 80 a~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~~~~~~~~~~~~~g~l~~d~~~~~v~~~~~~l~Lt~~Ef 159 (229)
T COG0745 80 ARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAGASRAEASEVLVFGDLTLDPDTRTVTLNGRELTLTPKEF 159 (229)
T ss_pred CCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEECCCHHHH
T ss_conf 68728889999975634233488998999999999967365665545465079889999802198998998731788999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 889998718997378999999871887777753036678999885110678884388887820264568
Q gi|254780893|r 156 QMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 156 ~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
.||.+|++|+|+++||++|++.+|+.+...++||||+||+|||+||...++.+.+|+||||.||+|..+
T Consensus 160 ~lL~~L~~~~g~v~sR~~L~~~vw~~~~~~~~rtvdvhI~rLR~Kl~~~~~~~~~I~TvrG~GY~l~~~ 228 (229)
T COG0745 160 ELLELLARHPGRVLSREQLLEAVWGYDFEVDSRTVDVHISRLRKKLEKDPGAGRLIRTVRGVGYRLEEP 228 (229)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCEEEEEECEEEEEEEC
T ss_conf 999999966995268999999860866687643305998899997335678777299994526898408
No 16
>PRK11173 two-component response regulator; Provisional
Probab=100.00 E-value=0 Score=399.33 Aligned_cols=223 Identities=22% Similarity=0.434 Sum_probs=208.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
|||+||||+.++..+..+|+..||+|..+.|+.+|++.+..+.||++|+|++||++||+++|+.+|+.. .+||||+|++
T Consensus 5 ~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~~~~DlvilDi~lp~~~G~~l~~~iR~~~-~~piI~lta~ 83 (237)
T PRK11173 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQA-NVALMFLTGR 83 (237)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCC-CCCEEEEECC
T ss_conf 899995989999999999998899999989999999998638998999938999887303555665168-8478999432
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 10000011232210111223322211111222222222222--------2222222222222222222-33333222464
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH--------AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTG 152 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~--------~~~~~~~g~~~~d~~~~~v-~~~g~~i~LT~ 152 (236)
++.++++.||++||||||.|||+++||.+|++++++|.... ....+.+++|++|..++++ ..+|++++||+
T Consensus 84 ~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~r~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~l~~~~g~~i~Lt~ 163 (237)
T PRK11173 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLISPDGEQYKLPR 163 (237)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCCEEEECCH
T ss_conf 57788999997697678878988799999999998664135665333466543898889997268479971997997699
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCC
Q ss_conf 1168899987189973789999998718877777530366789998851106788843888878202645688
Q gi|254780893|r 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 (236)
Q Consensus 153 ~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~~ 225 (236)
+||.||.+|++|+|+++||++|++.|||.+..+++|++|+||+|||+||+..++.+.+|+||||.||+|+.+.
T Consensus 164 ~E~~lL~~L~~~~~~vvsR~~L~~~vwg~~~~~~~r~ld~~I~rLRkKl~~~~~~~~~I~TvrG~GYrf~~~~ 236 (237)
T PRK11173 164 SEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 (237)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCC
T ss_conf 9999999998679987689999999619887888586999999999976527999981997878177978006
No 17
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=100.00 E-value=0 Score=395.99 Aligned_cols=224 Identities=29% Similarity=0.483 Sum_probs=211.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
+|||+||||+.+++.+...|+..||.|.+|.++++|++.+....||++|+|++||++||+++++.+|+. +++|||++|+
T Consensus 11 ~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~lp~~~Gl~l~~~lr~~-~~~piI~lta 89 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRF-SDIPIVMVTA 89 (240)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCC-CCCCEEEECC
T ss_conf 879999298999999999999889999998999999999973799899987999888776321122115-7646899816
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 2100000112322101112233222111112222222222222--22222222222222222233333222464116889
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~--~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL 158 (236)
+++.++++.||++|||||+.|||+++||++||++++||..... ......+++.+|..+++++++|+.++||++||.||
T Consensus 90 ~~~~~~~~~al~~GAddYl~KPf~~~eLlari~~~lrr~~~~~~~~~~~~~~~l~ld~~~~~~~~~~~~i~LT~~E~~lL 169 (240)
T PRK10710 90 KIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDESRFQASWRGKMLDLTPAEFRLL 169 (240)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCEEEEECCEEEECCHHHHHHH
T ss_conf 78889999999869987600776538999999999845235556443000047899856319998999985589999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCC
Q ss_conf 9987189973789999998718877777530366789998851106788843888878202645688
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~~ 225 (236)
++|++|+|++|||++|++.+|+.....++|+||+||+|||+||+..++.+.+|+||||.||+|+.+|
T Consensus 170 ~~L~~~~g~vvSre~L~~~vw~~~~~~~~rsid~~I~rLRkKl~~~~~~~~~I~TvrG~GYrf~~~~ 236 (240)
T PRK10710 170 KTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 (240)
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCCC
T ss_conf 9999779973989999999628888888465999999999960106999981999898556277102
No 18
>PRK13856 two-component response regulator VirG; Provisional
Probab=100.00 E-value=0 Score=384.80 Aligned_cols=228 Identities=28% Similarity=0.418 Sum_probs=208.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC-
Q ss_conf 5999869989999999999988989999999899999998579947883114987433431112222322331001333-
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG- 80 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~- 80 (236)
|||+||||..++..+..+|+..||+|..+.++.++++.+....||++|+|++||++||+++|+.||+.. .+||||+|+
T Consensus 3 ~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~~-~~piiilt~~ 81 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATKS-DVPIIIISGD 81 (241)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCC-CCCEEEEECC
T ss_conf 899996989999999999987799999989999999998659999999969998766134555640369-9736999726
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 210000011232210111223322211111222222222222----2222222222222222222-33333222464116
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEY 155 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~----~~~~~~~g~~~~d~~~~~v-~~~g~~i~LT~~E~ 155 (236)
+.+..+++.||++||||||+|||+++||++||++++||.... ....+.+|++.+|...+.+ +.+|++++||++||
T Consensus 82 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lrr~~~~~~~~~~~~~~~~~~~ld~~~~~l~~~~~~~v~LT~~E~ 161 (241)
T PRK13856 82 RLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVRPNVVRTKDRRSFCFADWTLNLRQRRLISEAGGEVKLTAGEF 161 (241)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCEEEEECCEEEECCHHHH
T ss_conf 78789999998769988997776777999999999874546567776744998999997578789997996986788999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCCCC
Q ss_conf 88999871899737899999987188777775303667899988511067888438888782026456887545566
Q gi|254780893|r 156 QMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 (236)
Q Consensus 156 ~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~~~~e~~~~ 232 (236)
.||.+|++|+|++|||++|++.+|+.+..+++|++|+||+||||||+..+..+.+|+||||.||+|.++... +++
T Consensus 162 ~lL~~L~~~~~~vvsRe~L~~~~~~~~~~~~~r~id~~I~rLRkKL~~~~~~~~~I~TvrG~GY~f~~~~~~--~~~ 236 (241)
T PRK13856 162 NLLVAFLEKPRDVLSREQLLIASRVREEEVYDRSIDVLILRLRRKLEQDPANPQLIKTARGAGYFFDADVDV--SYG 236 (241)
T ss_pred HHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCC--CCC
T ss_conf 999999876994381999999844567788868699999999997313889998099773715498232463--346
No 19
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=100.00 E-value=0 Score=376.91 Aligned_cols=210 Identities=28% Similarity=0.477 Sum_probs=198.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
+|||+||||+.+++.+..+|+..||+|..|.|+.+|+..+..+.||++|+|++||++||+++|+.||+.. ++||||+|+
T Consensus 3 ~kILlVEDD~~l~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~~~~DlvilDi~lp~~~G~el~~~iR~~~-~~piI~lta 81 (224)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSRS-TVGIILVTG 81 (224)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCC-CCCEEEECC
T ss_conf 7199991999999999999998799999989999999999608999999889999887661376763047-855686335
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2100000112322101112233222111112222222222------------2222222222222222222223333322
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR------------GHAQSLIVTGDLSVNLDAKTVEVQGHRI 148 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~------------~~~~~~~~~g~~~~d~~~~~v~~~g~~i 148 (236)
+++.++++.||++|||||+.|||+++||++||++++||.. ......+.+|+|++|..+++++.+|+.+
T Consensus 82 ~~~~~~~i~al~~GaddYl~KPf~~~eL~ari~allrR~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~i 161 (224)
T PRK10766 82 RTDSIDRIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLARQAQAVAEQPETQDNCYRFAGYCLNVNRRTLERNGEPI 161 (224)
T ss_pred CCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEE
T ss_conf 58989999999849414513999889999999999725244211211234667778769999999988888999899998
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 24641168899987189973789999998718877777530366789998851106788843888878
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG 216 (236)
+||++||.||.+|++|+|++|||++|++.||+.+..+++|++|+||+|||+||+ +++|+||||
T Consensus 162 ~LT~~E~~lL~~L~~~~g~vvsre~L~~~vw~~~~~~~~~sid~~I~rLRkKl~-----~~~I~tv~G 224 (224)
T PRK10766 162 KLTKAEYELLVAFVTNPGQVLSRERLLRMLSHRVEDPNDRTIDVLIRRLRHKLN-----PDLFVTVHG 224 (224)
T ss_pred ECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC-----CCCEEECCC
T ss_conf 678999999999996799739699999996488878884729999999997679-----886794989
No 20
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=100.00 E-value=1e-34 Score=229.41 Aligned_cols=182 Identities=22% Similarity=0.431 Sum_probs=157.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
+|||||||+.+++.+...|+..||.|..+.++.++++.+...+||++|+|++||++||+++++++|+..|.+|||++|++
T Consensus 5 tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vivlT~~ 84 (202)
T PRK09390 5 VVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGH 84 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 79998499999999999999889989998999999999765797999877999998960799998722899867999745
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 10000011232210111223322211111222222222222222222222222222222233333222464116889998
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L 161 (236)
++.+...+|+++||++|+.||+++++|+..|+..+++......... .. -...+..-.||++|.++|.++
T Consensus 85 ~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~~~~~~~~~~----~~-------~~~~~~~~~LT~RE~eVL~ll 153 (202)
T PRK09390 85 GDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQAPAAAKSEA----VA-------ADIRARIASLSERERQVMDGL 153 (202)
T ss_pred CCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHH----HH-------HHHHHHHCCCCHHHHHHHHHH
T ss_conf 7488889999829464455999999999999999971523242146----67-------888740066998999999999
Q ss_pred HHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 718997378999999871887777753036678999885110
Q gi|254780893|r 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 162 ~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
++ | .|..+|.+.+ ..+.+||++|++|+++||+-
T Consensus 154 ~~--G--~snkeIA~~L-----~iS~~TV~~h~~~I~~KL~v 186 (202)
T PRK09390 154 VA--G--LSNKVIARDL-----DISPRTVEVYRANVMTKMQA 186 (202)
T ss_pred HC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 83--8--9689999997-----98788999999999999688
No 21
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.97 E-value=8.3e-31 Score=205.87 Aligned_cols=191 Identities=26% Similarity=0.400 Sum_probs=155.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 95999869989999999999988-98999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSE-NFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~-g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
+||||||||+.++..+...|+.. ++.+. .+.++.++++.+....||++|+|++||+++|+++++.||+..+.+|||++
T Consensus 7 irVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~~~~~~pDlvllDl~lp~~~G~~~~~~l~~~~~~~~iivl 86 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF 86 (216)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 78999839999999999999758993899998999999999870799999995999998887642323345788746763
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 332100000112322101112233222111112222222222222222222222222-2222223333322246411688
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVN-LDAKTVEVQGHRIHLTGKEYQM 157 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d-~~~~~v~~~g~~i~LT~~E~~l 157 (236)
|+.++.+...+++++||++|+.||+++++|...|+.+++......+... +.... .....-........||++|.++
T Consensus 87 t~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~~g~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~LT~RE~eV 163 (216)
T PRK10651 87 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALT---PVLAASLRANRATTERDVNQLTPRERDI 163 (216)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHH---HHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 0554188999999669878983789999999999999859971698899---9999875226665444423489899999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9998718997378999999871887777753036678999885110
Q gi|254780893|r 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 158 L~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
|.++++ | .|..+|.+.+ ..+.+||++|++++++||+-
T Consensus 164 L~ll~~--G--~snkeIA~~L-----~iS~~TV~~h~~~i~~KLgv 200 (216)
T PRK10651 164 LKLIAQ--G--LSNKMIARRL-----DITESTVKVHVKHMLKKMKL 200 (216)
T ss_pred HHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 999985--9--9999999996-----97899999999999998489
No 22
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.97 E-value=9.1e-31 Score=205.62 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=155.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 9599986998999999999998-898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
+||+||||++.++..|...|+. .+|+|. .+.++.++++.+...+||++|+|++||+++|+++++.||+..|.++|+++
T Consensus 7 irIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~~pDlvllD~~lp~~~G~~~~~~l~~~~p~~~iivl 86 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIIL 86 (215)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 57999839899999999999758992899998999999999864499899980899899874123356541887736886
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHH
Q ss_conf 33210000011232210111223322211111222222222222222222222222222222233333-22246411688
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQM 157 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~-~i~LT~~E~~l 157 (236)
|+.++.+...+++++||++|+.||.++++|+..|+.+........+... ... . .......... ...||++|+++
T Consensus 87 t~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~---~~l-~-~~~~~~~~~~~~~~LT~RE~eV 161 (215)
T PRK10403 87 TVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVN---QYL-R-EREMFGAEEDPFSVLTERELDV 161 (215)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHH---HHH-H-HHHCCCCCCCCCCCCCHHHHHH
T ss_conf 3243236789987468766884899999999999999849984798999---999-8-7421246677445689999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9998718997378999999871887777753036678999885110
Q gi|254780893|r 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 158 L~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
|.++++ | .|..+|.+.+ ..+.+||++|++||++||.-
T Consensus 162 L~lla~--G--~snkeIA~~L-----~iS~~TV~~h~~~I~~KLgv 198 (215)
T PRK10403 162 LHELAQ--G--LSNKQIASVL-----NISEQTVKVHIRNLLRKLNV 198 (215)
T ss_pred HHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 999986--9--9999999997-----98299999999999998689
No 23
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.97 E-value=5.9e-30 Score=200.74 Aligned_cols=185 Identities=17% Similarity=0.225 Sum_probs=155.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 9599986998999999999998898999-999989999999857994788311498743343111222232233100133
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
|+||||||++.++..+...|+..+++|. .+.|+.++++.+...+||++|+|+.||+++|+++++.||+..|.++||++|
T Consensus 1 m~vlivDDh~lvr~gl~~ll~~~~~~vv~~~~~~~~~l~~~~~~~pDvvllDl~lp~~~G~~~~~~ir~~~~~~~viv~s 80 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 80 (204)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 98999869899999999999868998999979999999998743979999958999998416788898727980599997
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHH
Q ss_conf 3210000011232210111223322211111222222222222222222222222222222233333-222464116889
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMI 158 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~-~i~LT~~E~~lL 158 (236)
++++.....+++++||++|+.|+.++++|...|+.+.....-.+.. +.........+.. .-.||++|.++|
T Consensus 81 ~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~aI~~v~~G~~~~~~~--------~~~~~~~~~~~~~~~~~Lt~RE~eVL 152 (204)
T PRK09958 81 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFS--------LNRFVGSLTSDQQKLDSLSKQEISVM 152 (204)
T ss_pred CCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHH--------HHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 2465211443352686379978999999999999997799708899--------99998631356311256899999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99871899737899999987188777775303667899988511
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
.++++ | .|..+|.+.+ ..+.+||++|++|+.+||.
T Consensus 153 ~ll~~--G--~snkeIA~~L-----~iS~~TV~~h~~~i~~KL~ 187 (204)
T PRK09958 153 RYILD--G--KDNNDIAEKM-----FISNKTVSTYKSRLMEKLE 187 (204)
T ss_pred HHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHC
T ss_conf 99986--9--9999999897-----8899999999999999848
No 24
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-29 Score=198.08 Aligned_cols=218 Identities=22% Similarity=0.338 Sum_probs=178.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
|||+|||||......|...|++.|+.+..++++.+|+..+....||++++|+.||++||+++++++|...+.+||||+|+
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIss 80 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISS 80 (361)
T ss_pred CCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 92799846389999999999861102100688788999998438877999852378608789999987531486899963
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC-CCCCHHHHH
Q ss_conf 210000011232210111223322211111222222222222222222222222222222-233333222-464116889
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKT-VEVQGHRIH-LTGKEYQMI 158 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~-v~~~g~~i~-LT~~E~~lL 158 (236)
+.+ ....++++.++||+.|||.++-|-..|.+++++....++.. .+-...+....+ +..+|+.++ .|+|-.+|+
T Consensus 81 h~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~~~eee--~~~~iscfgg~ev~~rqg~~vkWis~KA~ELF 156 (361)
T COG3947 81 HAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELTAEEE--SGTQISCFGGTEVVLRQGQQVKWISRKALELF 156 (361)
T ss_pred CHH--HHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHC--CCEEEEECCCEEEECCCCCEEEEHHHHHHHHH
T ss_conf 056--52320355667541688888899999998740244441001--37046750640012347842230136799999
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 9987189973789999998718877777-53036678999885110678884388887820264568
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~-~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
.+|..|.|+.|++..+++.+|.+..... +.-+.+-|++|||.|...... -+.|-...||+|.-.
T Consensus 157 ayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~n--e~vts~d~~Ykld~~ 221 (361)
T COG3947 157 AYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNAN--EAVTSQDRKYKLDAG 221 (361)
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHCCC--CEEEECCCCEEEECC
T ss_conf 99998248855075799997032004668999999999999984530367--548973772477448
No 25
>PRK10693 response regulator of RpoS; Provisional
Probab=99.96 E-value=3.3e-30 Score=202.28 Aligned_cols=116 Identities=23% Similarity=0.383 Sum_probs=110.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
||||||||+.++..+...|+..||.|..|.||.+|++.+....||+||+|+.||++||+++|+++|+..+.+|||++|++
T Consensus 9 kILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIvlTa~ 88 (337)
T PRK10693 9 QILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVISAT 88 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 89999499999999999999789999998999999999865899999996899999989999999985899649999868
Q ss_pred CCHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 1000001123221011122332-22111112222222
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPF-NKEELVARIRAIVR 117 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~-~~~eL~ari~~llr 117 (236)
++.+++++|+++|||||+.||+ +..+|.+++.+.++
T Consensus 89 ~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~ 125 (337)
T PRK10693 89 ENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY 125 (337)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999999999749958997896999999999998751
No 26
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.96 E-value=4e-29 Score=195.75 Aligned_cols=176 Identities=18% Similarity=0.209 Sum_probs=134.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCE-EEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 9599986998999999999998-8989-9999998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~-v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
|||||||||+.++..+..+|+. .||. |..|.|+.+|+..+...+||+|++|+.||++||+++++.||+.++.+||||+
T Consensus 5 i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~~~pDLvLLDi~LPd~~Glell~~lr~~~~~~~VI~i 84 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFT 84 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 86999959899999999999728995499998999999999973599999982898999799999999964879988999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCC
Q ss_conf 33210000011232210111223322211111222222222222-2222222222222----222222333332224641
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-AQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGK 153 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~-~~~~~~~g~~~~d----~~~~~v~~~g~~i~LT~~ 153 (236)
|++++.+...+|+..||+||+.|||++++|..++....++.+.. ..... ..-.+| ...+......-+=-|++.
T Consensus 85 TA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~~~~~l~~~~~~--~Q~~iD~~~~~~~~~~~~~~lpKGl~~~ 162 (225)
T PRK10046 85 TAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSA--SQKQIDEMFNAYARGEPKDELPTGIDPL 162 (225)
T ss_pred ECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 68999999999997499831028999999999999999999986357768--9999999962335688856589999989
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 1688999871899737899999987
Q gi|254780893|r 154 EYQMIELLSLRKNTTLTKEMFLNHL 178 (236)
Q Consensus 154 E~~lL~~L~~~~g~vvsr~~i~~~v 178 (236)
-.+...-++...+..+|-+++.+.+
T Consensus 163 Tl~~v~~~l~~~~~~~ta~eva~~~ 187 (225)
T PRK10046 163 TLNAVRKLFKEPGVQHTAETVAQAL 187 (225)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999999997179986899999985
No 27
>PRK09483 response regulator; Provisional
Probab=99.96 E-value=7.7e-29 Score=194.03 Aligned_cols=188 Identities=20% Similarity=0.353 Sum_probs=156.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 9599986998999999999998-898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
||||||||++.++..+...|+. .+++|. .+.++.++++.+...+||++|+|++||+++|+++++.+++..|.++||++
T Consensus 2 i~VlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~p~~~vivl 81 (216)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRSTPDVKIIML 81 (216)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 58999849999999999999748995899998999999999985599999986889898752377888740899857863
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCCCHHH
Q ss_conf 33210000011232210111223322211111222222222222222222222222222222233-333-2224641168
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV-QGH-RIHLTGKEYQ 156 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~-~g~-~i~LT~~E~~ 156 (236)
|++++.....+++++||++|+.|+.++++|...|+++.+...-..+... ..+.+. .+.. ... .-.||++|.+
T Consensus 82 s~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~--~~~~~~----~~~~~~~~~~~~LT~RE~e 155 (216)
T PRK09483 82 TVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIA--QQMALS----QFEPATENPFASLSERELQ 155 (216)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHH--HHHHHH----CCCCCCCCCCCCCCHHHHH
T ss_conf 0566328899999748878994799999999999999859970698999--999873----2376545654568999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89998718997378999999871887777753036678999885110
Q gi|254780893|r 157 MIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 157 lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
+|.++++ | .|..+|.+.+ ..+.+||++|++++.+||.-
T Consensus 156 Vl~ll~~--G--~snkeIA~~L-----~iS~~TV~~h~~~i~~KL~v 193 (216)
T PRK09483 156 IMLMITK--G--QKVNEISEQL-----NLSPKTVNSYRYRMFSKLNI 193 (216)
T ss_pred HHHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 9999987--9--9999999996-----98999999999999998099
No 28
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.96 E-value=1.2e-29 Score=198.98 Aligned_cols=116 Identities=35% Similarity=0.646 Sum_probs=110.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC--CCCCEECCC
Q ss_conf 599986998999999999998898999999989999999857994788311498743343111222232--233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK--ISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~--~~~pII~ls 79 (236)
|||||||++..+..+...|+..||+|..|.||++|++.+...+||+|++|+.||++||+++|+.||+.. ..+||||+|
T Consensus 4 rILiVdD~~~~~~~l~~~L~~~~y~v~~a~~G~eAL~~~~~~~PDLILlDi~MP~mdG~ev~r~Lk~~~~~~~iPVIvlT 83 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVVMVT 83 (457)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 19999498999999999998789999998999999999971899989992877999999999999659888998499997
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32100000112322101112233222111112222222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
+.++.+.+++|+++||+|||.|||+..+|++|+++++|
T Consensus 84 a~~d~e~~~~al~~GA~DYL~KP~~~~~L~~ri~~l~r 121 (457)
T PRK09581 84 ALDDPSDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 89999999999864887899899998999999999998
No 29
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.96 E-value=2e-28 Score=191.52 Aligned_cols=189 Identities=20% Similarity=0.296 Sum_probs=156.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 9599986998999999999998-898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
.||+||||++.++..++..|+. .++.+. .+.++.++++.+...+||++|+|++||+.+|+++++.|++..|.++|+++
T Consensus 4 ~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~ilvl 83 (210)
T PRK09935 4 ASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKVLFL 83 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 88999859699999999999629892899998999999999974799999988999998864056789873899708997
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 33210000011232210111223322211111222222222222222222222222222222233333222464116889
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL 158 (236)
|++++.....+++++||++|+.|+.++++|...|+.+++...-.++.... +-.....-........||++|.++|
T Consensus 84 s~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~~~~~~~~~~-----~~~~~~~~~~~~~~~~Lt~RE~eVL 158 (210)
T PRK09935 84 SSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSGYSFFPSETLN-----FIKSNKCSKGSSTDMPLSNREVTVL 158 (210)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH-----HHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 17672999999996687768867899999999999998599536989999-----9873436666556789998999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998718997378999999871887777753036678999885110
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.++++ | .|..+|.+.+ ..+.+||++|++++.+||+-
T Consensus 159 ~ll~~--G--~snkeIA~~L-----~iS~~TV~~h~~~I~~KL~v 194 (210)
T PRK09935 159 RYLAN--G--LSNKEIAEQL-----LLSNKTISAHKSNIYGKLGL 194 (210)
T ss_pred HHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 99986--9--9999999894-----98899999999999998199
No 30
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.95 E-value=3.4e-29 Score=196.15 Aligned_cols=115 Identities=23% Similarity=0.421 Sum_probs=112.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
||||||||+.++..+...|+..||+|..+.|+.+|++.+....||+||+|++||++||+++++++|+..+.+||||+|++
T Consensus 5 kILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvl~Di~mP~~~Gl~ll~~lr~~~~~~pvIviT~~ 84 (469)
T PRK10923 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAH 84 (469)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 79999498999999999998779989998999999999866999999878999998999999999842989978999899
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10000011232210111223322211111222222
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
++.+..++|+.+||+||+.|||++++|+..|+..+
T Consensus 85 ~~~~~av~A~~~GA~dyL~KP~~~~~L~~~v~ral 119 (469)
T PRK10923 85 SDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 (469)
T ss_pred CCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99899999985570443008899999999999999
No 31
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.95 E-value=5.6e-29 Score=194.85 Aligned_cols=116 Identities=26% Similarity=0.521 Sum_probs=112.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
|+|||||||+.++..+...|+..||+|..+.++.+|+..+....||+|++|++||++||+++++++|+.+|.+|||++|+
T Consensus 6 ~~ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlvllD~~mp~~~Gl~lL~~l~~~~p~~pvIviT~ 85 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTA 85 (441)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 85999839899999999999977998999899999999986489999998899999989999999984298982899969
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 210000011232210111223322211111222222
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
+++.+..++|+..||.|||.|||++++|...|+..+
T Consensus 86 ~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al 121 (441)
T PRK10365 86 YSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 (441)
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 999899999998285123407888999999999999
No 32
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.95 E-value=1.2e-28 Score=192.89 Aligned_cols=116 Identities=23% Similarity=0.506 Sum_probs=112.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
||||||||+.++..+...|+..||+|..|.|+.+|++.+....||+||+|+.||++||+++++.+|+..|.+|||++|++
T Consensus 6 rILIVDDd~~ir~~l~~~L~~~G~~V~~a~~~~~Al~~l~~~~~DlvllDi~mP~~~Glell~~ir~~~p~~pvIvlTa~ 85 (457)
T PRK11361 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAY 85 (457)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 28998399999999999999779989998999999999866898999982879999999999999820989938999689
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 100000112322101112233222111112222222
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
++.+..++|+..||+||+.|||++++|...|+..+.
T Consensus 86 ~~~~~av~A~k~GA~Dyl~KPf~~~~L~~~v~rAl~ 121 (457)
T PRK11361 86 AEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 998999999975966325699999999999999999
No 33
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=99.95 E-value=2.9e-28 Score=190.57 Aligned_cols=111 Identities=38% Similarity=0.644 Sum_probs=108.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 99986998999999999998898999999989999999857994788311498743343111222232233100133321
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
||+||||+..+..+...|+..||+|..+.||.+|++.+..++||++|+|++||++||++++++||+..+++|||++|+++
T Consensus 1 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~Di~mP~~dG~el~~~ir~~~~~~piI~~T~~~ 80 (111)
T pfam00072 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVLTAHG 80 (111)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 09998989999999999998899999989999999999847998999953689950157999997359998099997508
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0000011232210111223322211111222
Q gi|254780893|r 83 SIEDKVRGLQSGADDYISKPFNKEELVARIR 113 (236)
Q Consensus 83 ~~~~~~~al~~GAddyi~KP~~~~eL~ari~ 113 (236)
+.+...+|+++||+||+.|||++++|+++|+
T Consensus 81 ~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ir 111 (111)
T pfam00072 81 DEEDAVEALKAGANDFLSKPFDPEELVAALR 111 (111)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 9999999997798779949999899998529
No 34
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.95 E-value=1.6e-27 Score=186.14 Aligned_cols=190 Identities=24% Similarity=0.395 Sum_probs=156.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999889-8999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSEN-FNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g-~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
|||+++||++.++..+...|+..+ ++|. .+.++.++++.+....||++|+|+.||+++|+++++.|++..|.++|+++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvl 80 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVL 80 (211)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 94999809777999999999868996699982788999998513799889983788998759999999986899729999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHH
Q ss_conf 332100000112322101112233222111112222222222222222222222222222222333332-2246411688
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQM 157 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~-i~LT~~E~~l 157 (236)
|.+++.....+++++||++|+.|+.++++|...|+.+++...-.++... ..+........ ..... ..||++|..+
T Consensus 81 t~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~LT~RE~eV 156 (211)
T COG2197 81 TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIA--RKLAGLLPSSS--AEAPLAELLTPRELEV 156 (211)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEECHHHH--HHHHHCCCCCC--CCCCCCCCCCHHHHHH
T ss_conf 6778989999999779969986799999999999999758858788999--99975035655--4433357899899999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9998718997378999999871887777753036678999885110
Q gi|254780893|r 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 158 L~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
|.+|++ | .|..+|.+.+ ..+.+||.+|++++-+||.-
T Consensus 157 l~lla~--G--~snkeIA~~L-----~iS~~TVk~h~~~i~~KL~v 193 (211)
T COG2197 157 LRLLAE--G--LSNKEIAEEL-----NLSEKTVKTHVSNILRKLGV 193 (211)
T ss_pred HHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 999987--9--9889999997-----87898999999999998399
No 35
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.95 E-value=1e-27 Score=187.23 Aligned_cols=212 Identities=15% Similarity=0.237 Sum_probs=148.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHH--HHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9599986998999999999998-898999-999989999999--857994788311498743343111222232233100
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELC--KFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVC 76 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~--~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII 76 (236)
|||||||||+.+++.+..+|++ .||.|. .+.++.+|++.+ ...+||+|++|+.||++||+++++.||+.++.+|||
T Consensus 2 irVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~VI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 87999929899999999998518990899998999999999965799985899789999997899999999858998199
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC---CCCC--CC
Q ss_conf 13332100000112322101112233222111112222222222222-222222222222222222333---3322--24
Q gi|254780893|r 77 ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-QSLIVTGDLSVNLDAKTVEVQ---GHRI--HL 150 (236)
Q Consensus 77 ~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~-~~~~~~g~~~~d~~~~~v~~~---g~~i--~L 150 (236)
++|+.++.+...+|+..||.|||.|||.++.|..++.+..++..... ...+ ..=.+|..-+..... ...+ -|
T Consensus 82 ~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~~~~~l~~~~~~--~Q~~iD~l~~~~~~~~~~~~~lPKGl 159 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKRQYY--DQAELDQLIHGSSSNEQDPRRLPKGL 159 (239)
T ss_pred EEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9972688999999998395030489999999999999999999985457878--99999999850578888766699999
Q ss_pred CCCHH-HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC------EEEECC
Q ss_conf 64116-88999871899737899999987188777775303667899988511067888438888782------026456
Q gi|254780893|r 151 TGKEY-QMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR------GYVLRE 223 (236)
Q Consensus 151 T~~E~-~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~------GY~l~~ 223 (236)
++.-. .+...|..+++..+|-+++.+.+ ..+--|.+-|.-.|-.. +.-.....+|. -|+|++
T Consensus 160 ~~~TL~~i~~~l~~~~~~~~sa~eva~~~-----giSRvTaRRYLe~L~~~------g~~~~~~~YG~~GRP~~~Y~l~~ 228 (239)
T PRK10430 160 TPQTLRTLCQWIDAHQDYEFSTDELANEV-----NISRVSCRKYLIWLVNC------HILFTSIHYGVTGRPVYRYRLQA 228 (239)
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHC------CEEEEEECCCCCCCCCEEEEECC
T ss_conf 99999999999982799984699999885-----85298899999999868------95899835789999865787373
Q ss_pred CC
Q ss_conf 88
Q gi|254780893|r 224 NA 225 (236)
Q Consensus 224 ~~ 225 (236)
+.
T Consensus 229 ~~ 230 (239)
T PRK10430 229 EH 230 (239)
T ss_pred CH
T ss_conf 14
No 36
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.95 E-value=4.8e-28 Score=189.21 Aligned_cols=119 Identities=24% Similarity=0.450 Sum_probs=113.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC--CCCCEEC
Q ss_conf 9599986998999999999998898-999999989999999857994788311498743343111222232--2331001
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK--ISTPVCI 77 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~-~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~--~~~pII~ 77 (236)
||||+||||+..+..+...|+..|| +|..+.||.+|++.+....||+|++|++||++||+++++.+|+.. +.+|||+
T Consensus 6 lrILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~~Pii~ 85 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85 (129)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 89999979899999999999986997899989999999999858999999818999998999999998577778996899
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 333210000011232210111223322211111222222222
Q gi|254780893|r 78 LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 (236)
Q Consensus 78 ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~ 119 (236)
+|+.++.+.+.+|+++||++|+.|||++.+|..+++++++|.
T Consensus 86 ~T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~r~ 127 (129)
T PRK10610 86 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 988689999999998699889989899999999999999763
No 37
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.95 E-value=2.6e-27 Score=184.81 Aligned_cols=179 Identities=22% Similarity=0.300 Sum_probs=150.2
Q ss_pred CEEEEECCCHHHHHHHHHHHH-HCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999-8898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLK-SENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~-~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
|||+||||++.+++.++..|+ ..++++. .+.++.+++..+....||++|+|+.||+++|+++++.++. ..+||++
T Consensus 2 i~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~---~~~vivl 78 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK---GMATIML 78 (196)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC---CCCEEEE
T ss_conf 1999987979999999999812999599999899999999887449999998788788620779999843---8748999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 33210000011232210111223322211111222222222222222222222222222222233333222464116889
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL 158 (236)
|++++.....+++++||++|+.|+..++||+..|+.+.+... +...++. . .+ ..+..-.||++|.++|
T Consensus 79 s~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~~------~~~~~~~----~-~l-~~~~~~~LT~RE~eVL 146 (196)
T PRK10360 79 SVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC------YLTPDIA----I-KL-ASGRQDPLTKRERQVA 146 (196)
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC------CCCHHHH----H-HH-HCCCCCCCCHHHHHHH
T ss_conf 730759999999975998899778999999999999986995------6799999----9-98-7167689997999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998718997378999999871887777753036678999885110
Q gi|254780893|r 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 159 ~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.++++ | .|..+|.+.+ ..+.+||++|++++.+||+-
T Consensus 147 ~lia~--G--~snkeIA~~L-----~IS~~TVk~h~~~i~~KL~v 182 (196)
T PRK10360 147 EKLAQ--G--MAVKEIAAEL-----GLSPKTVHVHRANLMEKLGV 182 (196)
T ss_pred HHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 99987--9--9999999996-----99999999999999998199
No 38
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.94 E-value=1.3e-26 Score=180.64 Aligned_cols=186 Identities=16% Similarity=0.166 Sum_probs=153.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCC---CCCCCCCCCCCCCCCCCCE
Q ss_conf 9599986998999999999998-898999-9999899999998579947883114987---4334311122223223310
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTD---IPGFEVLRALRVAKISTPV 75 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~---~~G~~~~~~ir~~~~~~pI 75 (236)
|||+||||++.++..+...|+. .+++|. .+.++.++++.+....||++|+|++||+ +||+++++.+|+..|.++|
T Consensus 4 irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~v 83 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSI 83 (216)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 88999889799999999998159996899987999999999862398989982677999887899999999985899808
Q ss_pred ECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCH
Q ss_conf 0133321000001123221011122332221111122222222222222222222222222222223333-322246411
Q gi|254780893|r 76 CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQG-HRIHLTGKE 154 (236)
Q Consensus 76 I~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g-~~i~LT~~E 154 (236)
|++|++++.....+++++||++|+.|--.+.+|...|+++.+...-.++.. ..+ + ..+..++ ..-.||++|
T Consensus 84 ivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G~~~~~~~~---~~~-l----~~~~~~~~~~~~LT~RE 155 (216)
T PRK10840 84 IVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESV---SRL-L----EKISAGGYGDKRLSPKE 155 (216)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH---HHH-H----HHHCCCCCCCCCCCHHH
T ss_conf 998477878999999858974899878999999999999987994396999---999-9----97205888778999899
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6889998718997378999999871887777753036678999885110
Q gi|254780893|r 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 155 ~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.++|.++++ | .|..+|.+.+ ..+.+||++|++++-+||+-
T Consensus 156 ~eVL~lla~--G--~snkeIA~~L-----~iS~~TV~~h~~~i~~KLgv 195 (216)
T PRK10840 156 SEVLRLFAE--G--FLVTEIAKKL-----NRSIKTISSQKKSAMMKLGV 195 (216)
T ss_pred HHHHHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 999999986--9--9999999896-----98999999999999998299
No 39
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.94 E-value=2.2e-26 Score=179.29 Aligned_cols=116 Identities=23% Similarity=0.420 Sum_probs=108.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCEECC
Q ss_conf 959998699899999999999889899999998999999985799478831149874334311122223--223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA--KISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~--~~~~pII~l 78 (236)
+|||+|||++.-+..+...|+..|++|..|.||.+|++.+..++||+|+||+.||.|||++.++.||+. +..+|||.+
T Consensus 669 lrVLvVEDN~iN~~vi~~lL~~lG~~v~~A~nG~eAle~~~~~~fDLILMDiqMP~MDG~eATr~IR~~~~~~~~PIIAl 748 (920)
T PRK11107 669 LTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAV 748 (920)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 74999848899999999999984988999899999999974799978998899999989999999981867898959999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33210000011232210111223322211111222222
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
||+...+++-+|+++|.|||+.||++...|...+...+
T Consensus 749 TA~a~~~dre~cl~aGMddyLtKPI~~~~L~~~L~~~~ 786 (920)
T PRK11107 749 TAHAMAGERERLLGAGMDDYLAKPIDEAALKQVLLRWK 786 (920)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHC
T ss_conf 79989899999997799938728799999999999867
No 40
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.93 E-value=7e-27 Score=182.23 Aligned_cols=118 Identities=21% Similarity=0.368 Sum_probs=110.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
++||+|||++.-+..+...|+..||+|..|.||.+|++.+..++||+|+||++||.|||+++++.||+....+|||.+||
T Consensus 825 lrILVVEDNpINq~VL~~~L~~LG~~V~~A~NG~EALe~l~~~~fDLILMDIqMPvMDGyEaTr~IRe~~~~iPIIALTA 904 (947)
T PRK10841 825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTA 904 (947)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 88999907899999999999976999999899999999975699898997088899809999999980898494999938
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21000001123221011122332221111122222222
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr 118 (236)
+...+++-+|+++|.|||+.||++.+.|..-+....+|
T Consensus 905 nA~~edkerCleAGMDdyLsKPV~l~~L~~vL~~Y~~~ 942 (947)
T PRK10841 905 NALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 942 (947)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 99989999999879999997989799999999999877
No 41
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.93 E-value=6.4e-27 Score=182.45 Aligned_cols=113 Identities=35% Similarity=0.622 Sum_probs=109.1
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 99869989999999999988989999999899999998579947883114987433431112222322331001333210
Q gi|254780893|r 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 4 Livedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
|+||||+..+..+...|+..||.|..+.||.+|++.+..++||++|+|++||++||++++++||+..+.+|||++|++++
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~mP~~~G~el~~~ir~~~~~~pvI~lT~~~~ 80 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGD 80 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 98927299999999999988999999899999999987579999997799989872699999998589995999978789
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 000011232210111223322211111222222
Q gi|254780893|r 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 84 ~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
.+...+++++||+||+.|||++++|.++|++++
T Consensus 81 ~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 81 DEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 999999997689789969899999999999869
No 42
>PRK13435 response regulator; Provisional
Probab=99.93 E-value=2.7e-26 Score=178.67 Aligned_cols=126 Identities=23% Similarity=0.373 Sum_probs=108.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECC
Q ss_conf 9599986998999999999998898999-9999899999998579947883114987-4334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~~~~~pII~l 78 (236)
|||||||||..++..+...|+..||+|. .+.++++|++.+...+||++++|++||+ ++|++++++++. .+.+||||+
T Consensus 2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~-~~~ipvI~l 80 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSI-DGGVEVIFM 80 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 7899989989999999999998799799975999999999765999899978878999989999999987-599838999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 33210000011232210111223322211111222222222-22222222222
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RGHAQSLIVTG 130 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~-~~~~~~~~~~g 130 (236)
|++.+ .+.+..+||+|||.|||++++|.++|+.+++|. ...+....-+|
T Consensus 81 Ta~~d---~~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~rr~~~~a~~p~p~g 130 (141)
T PRK13435 81 TANPE---RVGHDFAGALGVIAKPYSLRQVARALSYVAARRVDDDASGPTPFG 130 (141)
T ss_pred ECCHH---HHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 77799---860134599858989999899999999999715689999999985
No 43
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.92 E-value=8.1e-26 Score=175.83 Aligned_cols=114 Identities=21% Similarity=0.381 Sum_probs=108.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
++||+|||++.-+..+...|+..||+|..|.||.+|++.+..++||+|+||++||+|||+++++.||+....+|||.+|+
T Consensus 959 l~ILvVeDn~~Nr~ll~~~L~~lG~~v~~a~nG~eAl~~~~~~~fDlILmDi~MP~MDG~e~tr~IR~~~~~~PIialTA 1038 (1197)
T PRK09959 959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTA 1038 (1197)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 87999799899999999999983999999899999999976699999998797899989999999964698694899979
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2100000112322101112233222111112222
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ 114 (236)
+...+++.+|+++|.|||+.||++++.|...+..
T Consensus 1039 ~a~~~~~~~cl~aGMdd~L~KPi~l~~L~~~L~~ 1072 (1197)
T PRK09959 1039 NAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQ 1072 (1197)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf 9999999999976998345188989999999985
No 44
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.92 E-value=9.1e-26 Score=175.52 Aligned_cols=181 Identities=19% Similarity=0.367 Sum_probs=152.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 99986998999999999998898999999989999999857994788311498743343111222232233100133321
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
|-+||||...++.+...|+..||.|.++.++.+++.......|-|+|+|+.||+++|+++..++.+.++..||||+|+++
T Consensus 7 V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiTGhg 86 (202)
T COG4566 7 VHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHG 86 (202)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 89976848899999999983895366504799998306678897699855788885089999999539998879982788
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 00000112322101112233222111112222222222222222222222222222222333332224641168899987
Q gi|254780893|r 83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 (236)
Q Consensus 83 ~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~ 162 (236)
+....+++++.||-|||.|||+...|+..|...+++......... ... .....--.||++|.++|..+.
T Consensus 87 DIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~--------~~~---~~~~~l~tLT~RERqVl~~vV 155 (202)
T COG4566 87 DIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEAD--------RQA---AIRARLATLTPRERQVLDLVV 155 (202)
T ss_pred CHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--------HHH---HHHHHHHHCCHHHHHHHHHHH
T ss_conf 728999999742156774788548999999999998888887677--------899---999999866988999999998
Q ss_pred HCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 18997378999999871887777753036678999885110
Q gi|254780893|r 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 163 ~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
+ |. ...+|...+ ..+++|+++|-+++=+|+..
T Consensus 156 ~--G~--~NKqIA~dL-----giS~rTVe~HRanvM~Km~a 187 (202)
T COG4566 156 R--GL--MNKQIAFDL-----GISERTVELHRANVMEKMQA 187 (202)
T ss_pred C--CC--CCHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 3--76--308999983-----98664599999999999733
No 45
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=99.91 E-value=7.1e-25 Score=170.16 Aligned_cols=95 Identities=32% Similarity=0.547 Sum_probs=91.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 22222222222222233333222464116889998718997378999999871887777753036678999885110678
Q gi|254780893|r 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG 206 (236)
Q Consensus 127 ~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~ 206 (236)
+.+|++.+|..++++..+|+++.||++||.||.+|++|+|++|||++|++.+|+.+..++++++++||+|||+||+..+.
T Consensus 1 i~~g~~~~d~~~~~l~~~~~~i~Lt~~E~~lL~~L~~~~~~vvsr~~l~~~vw~~~~~~~~~~l~~~I~rLRkkl~~~~~ 80 (95)
T cd00383 1 LRFGDLVLDPARREVTRDGEPVELTPKEFELLELLARNPGRVLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLEDDPS 80 (95)
T ss_pred CEEECEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 97916999868899999999987799999999999877997456999999853976455745499999999999752689
Q ss_pred CCCEEEEECCCEEEE
Q ss_conf 884388887820264
Q gi|254780893|r 207 GKNYIETVWGRGYVL 221 (236)
Q Consensus 207 ~~~~I~tvrG~GY~l 221 (236)
.+.+|+|+||.||+|
T Consensus 81 ~~~~I~tv~g~GY~L 95 (95)
T cd00383 81 NPRLIKTVRGVGYRL 95 (95)
T ss_pred CCCEEEECCCCCCCC
T ss_conf 998599818855359
No 46
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=99.91 E-value=3.7e-25 Score=171.86 Aligned_cols=118 Identities=32% Similarity=0.519 Sum_probs=107.4
Q ss_pred CEEEEECCCHHHHHHHHHHHH-HCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC-CC-EE
Q ss_conf 959998699899999999999-8898999-99998999999985799478831149874334311122223223-31-00
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLK-SENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS-TP-VC 76 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~-~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~-~p-II 76 (236)
+||+|+||+.++++.|+.||. +..++|. .|.||.+|++.+.++.||++|||+=||-+||+.++++|++.... -| ||
T Consensus 3 Iri~i~DDNkEFc~lL~eY~~~Q~D~EVvG~A~nG~~a~~~I~~q~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~vi 82 (270)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQEDMEVVGVAHNGVDALELIKEQKPDVVVLDIIMPHLDGIGVLEKLNEIELKARPRVI 82 (270)
T ss_pred EEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 28999828889999999998528983899741476899999960899899951504300057999998898874489588
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 133321000001123221011122332221111122222222
Q gi|254780893|r 77 ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 (236)
Q Consensus 77 ~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr 118 (236)
+|||.+.+.=--+|.++|||.||.||||++.|.+||+-+...
T Consensus 83 ~LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~ 124 (270)
T TIGR02875 83 MLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG 124 (270)
T ss_pred EEECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 852237558999999728981566504178899999986246
No 47
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=99.91 E-value=3.5e-25 Score=171.97 Aligned_cols=115 Identities=21% Similarity=0.392 Sum_probs=110.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99986998999999999998898999999989999999857-99478831149874334311122223223310013332
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~-~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
|+|||||..+|-.|...|...|+.|..+.|+.+++..+..+ .||++|.|+.||++||++++.+|++..|.+|||++|++
T Consensus 1 vwvvDDD~siR~VL~~AL~~~g~~v~~f~~A~~~l~~l~~~p~pD~~~tD~rMPg~~Gl~LL~~ik~~~P~LPVIvM~A~ 80 (471)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGIEVRTFDNAASVLRALAREPQPDLLITDVRMPGEDGLDLLKQIKKRHPKLPVIVMTAH 80 (471)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 95776471899999999966695453113189999998447999879861226882489999999850899977987130
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 100000112322101112233222111112222222
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
++....+.+++.||-+|+.||||.+|+++-+...+.
T Consensus 81 ~dl~~Av~a~~~GAfEYLpKPFD~de~v~lv~RA~~ 116 (471)
T TIGR01818 81 SDLDSAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 116 (471)
T ss_pred HHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 678999999735830217698766889999998610
No 48
>PRK13557 histidine kinase; Provisional
Probab=99.91 E-value=1.2e-24 Score=168.85 Aligned_cols=117 Identities=21% Similarity=0.376 Sum_probs=109.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCC-CCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 599986998999999999998898999999989999999857-994788311498-743343111222232233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLT-DIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~-~~DlvIlD~~lp-~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
+||+||||+..+..++..|+..||.|..|.||.+|++.+..+ +||+|++|+.|| +|||+++++.+|+..|.+|||++|
T Consensus 415 ~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~~p~i~ii~~T 494 (538)
T PRK13557 415 TILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTT 494 (538)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 58996798999999999999769999998999999999960999889988777999988999999998538998399997
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321000001123221011122332221111122222222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr 118 (236)
++.+....-.++..|+++||.|||+..+|..+|+.+|..
T Consensus 495 g~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 533 (538)
T PRK13557 495 GYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLDG 533 (538)
T ss_pred CCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCC
T ss_conf 998778899775289988881989999999999998678
No 49
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.91 E-value=7.5e-25 Score=169.99 Aligned_cols=116 Identities=27% Similarity=0.548 Sum_probs=111.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
+||+||||..++..+...|+..||+|..+.|+.+|+..+....||+||+|+.||++||+++++.+++.++.+|+|++|++
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~ 85 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGH 85 (464)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 78999297899999999999769748985899999999862899989981678999669999999963899988998288
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 100000112322101112233222111112222222
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
++.+..+.|+..||-||+.|||+++.|..-++..+.
T Consensus 86 g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~ 121 (464)
T COG2204 86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE 121 (464)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999999999855703332189999999999999998
No 50
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.90 E-value=2.4e-24 Score=166.98 Aligned_cols=116 Identities=32% Similarity=0.433 Sum_probs=105.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC---CCCCEEC
Q ss_conf 9599986998999999999998898999999989999999857994788311498743343111222232---2331001
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK---ISTPVCI 77 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~---~~~pII~ 77 (236)
+|||+|||++.-+..+...|+..||.|..|.||.+|++.+..++||+|+||+.||+|||+++++.||+.. ..+|||.
T Consensus 526 lrILvVEDn~iN~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~~fDLILMDiqMP~MDG~Eatr~IR~~~~~~~~~PIIA 605 (779)
T PRK11091 526 LNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELRERYGREDLPPLVA 605 (779)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 81899868899999999999975999999899999999850699998998289999978999999984257689992798
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3332100000112322101112233222111112222222
Q gi|254780893|r 78 LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 78 ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
+|++.- .++-+++++|.|||+.||++++.|..-+...+.
T Consensus 606 LTAna~-~d~~~~l~aGMdd~L~KPi~~~~L~~~l~~~~~ 644 (779)
T PRK11091 606 LTANVL-KDKQEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred EECCCC-HHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHC
T ss_conf 818741-769999976998475188989999999999846
No 51
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.90 E-value=5.8e-24 Score=164.66 Aligned_cols=117 Identities=23% Similarity=0.219 Sum_probs=108.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 959998699899999999999889899999998999999985-7994788311498743343111222232233100133
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
.|||+|||++.-+..+...|+..||+|..|.||.+|++.+.. .+||+|+||++||+|||++++++||+..+.+|||.+|
T Consensus 682 lrVLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~MP~mDG~eatr~iR~~~~~~pIIAlT 761 (912)
T PRK11466 682 LRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFS 761 (912)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEC
T ss_conf 86999948788999999999986998999899999999997189985898769999998999999998619999789977
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32100000112322101112233222111112222222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
++.-.+++-+++.+|.|||+.||++++.|...+...++
T Consensus 762 A~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l~ 799 (912)
T PRK11466 762 AHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (912)
T ss_pred CCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHC
T ss_conf 98788999999976998775498999999999999846
No 52
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.89 E-value=1.9e-23 Score=161.54 Aligned_cols=116 Identities=29% Similarity=0.496 Sum_probs=100.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 95999869989999999999988-98999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSE-NFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~-g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
||||||||+...|..|+..|+.. +|+|. .|.||.+|++.+....||+|+||++||++||++++++|++..| +||||+
T Consensus 3 irVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~nG~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~p-~pVimv 81 (345)
T PRK00742 3 IRVLVVDDSAFMRRLLSEILNSDPDIEVVGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEALRKIMALRP-TPVVMV 81 (345)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCC-CCEEEE
T ss_conf 2699992988999999999972899089999899999999988609999998378899987999999997589-877999
Q ss_pred CCCCC--HHCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCC
Q ss_conf 33210--0000112322101112233222---------111112222222
Q gi|254780893|r 79 SGMSS--IEDKVRGLQSGADDYISKPFNK---------EELVARIRAIVR 117 (236)
Q Consensus 79 s~~~~--~~~~~~al~~GAddyi~KP~~~---------~eL~ari~~llr 117 (236)
|+..+ .+..++|++.||.||+.||... ++|+.+|+++.+
T Consensus 82 Ss~~~~~~~~~~~Al~~GA~D~i~KP~~~~~~~~~~~~~~L~~ki~~~~~ 131 (345)
T PRK00742 82 SSLTERGAEITLEALELGAVDFVPKPFLGISEGMDAAAELLAEKVRAAAR 131 (345)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 72255565999999975922489578887653299999999999999851
No 53
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.88 E-value=1e-23 Score=163.12 Aligned_cols=116 Identities=22% Similarity=0.495 Sum_probs=108.0
Q ss_pred CEEEEECCCHHHHHHHHHHH--HHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 95999869989999999999--98898999-9999899999998579947883114987433431112222322331001
Q gi|254780893|r 1 MRILLIEDDKALAHSIELML--KSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCI 77 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L--~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ 77 (236)
.|||||||++.+++.|+..+ ++.|++|. .|.||.+|++.+.+.+||+||+|++||++||+++++.+++.+|++-+|+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~II 81 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQSPDTEFII 81 (475)
T ss_pred EEEEEECCHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 13999667299999999848856369757875145799999987349978998157888757999999997499853999
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 333210000011232210111223322211111222222
Q gi|254780893|r 78 LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 78 ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
|||+++-+..-+|+..|++||+.||++..+|...+..+.
T Consensus 82 LSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~ 120 (475)
T COG4753 82 LSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKII 120 (475)
T ss_pred EECCCHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHH
T ss_conf 846420589999986185212207698999999999999
No 54
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.87 E-value=1.6e-22 Score=155.95 Aligned_cols=186 Identities=14% Similarity=0.091 Sum_probs=146.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEE-EEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCEECCC
Q ss_conf 59998699899999999999889899-99999899999998579947883114987433431112-22232233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA-LRVAKISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v-~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~-ir~~~~~~pII~ls 79 (236)
|||+++|....+..+...|++. ..+ ..+.|+.++++.+ ..||+|+||+.||+++|++.+++ ++...|.++||+||
T Consensus 12 ~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliLT 88 (216)
T PRK10100 12 TLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLN 88 (216)
T ss_pred EEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 8999558429999999988987-64763024776677644--79998998488788308999999997259997799996
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 32100000112322101112233222111112222222222222222222222222222222333332224641168899
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIE 159 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~ 159 (236)
.+++.+....++.+||++|+.|-.++++|+..|+++++-..-.++.... .+........ ......-.||++|.++|.
T Consensus 89 t~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~~l~~~~~~--~l~~~~~~~~-~~~~~~~~LT~RE~eIL~ 165 (216)
T PRK10100 89 TPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLAS--YLITHSGNYR-YNSTESALLTHREKEILN 165 (216)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHCCCC-CCCCCCCCCCHHHHHHHH
T ss_conf 8874899999976587667668999999999999998799723999999--9997102256-788777899989999999
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9871899737899999987188777775303667899988511
Q gi|254780893|r 160 LLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 160 ~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
++++ | .|..+|.+.+ +.+.+||++|++++-+||.
T Consensus 166 lla~--G--~sNkEIA~~L-----~iSe~TVk~H~~~I~~KL~ 199 (216)
T PRK10100 166 KLRI--G--ASNNEIARSL-----FISENTVKTHLYNLFKKIA 199 (216)
T ss_pred HHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHC
T ss_conf 9987--9--9999999894-----9889899999999999809
No 55
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.87 E-value=3.4e-22 Score=154.01 Aligned_cols=177 Identities=23% Similarity=0.284 Sum_probs=139.5
Q ss_pred CEEEEECCCHHHHHHHHHHHH-HCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999-8898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLK-SENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~-~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
|+|||||||+.+++.-..+++ -.||++. .|.++++|...+....||+++||+-||+.+|++++..||+++..+-||++
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~i 80 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVI 80 (224)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 92899708658999999999738995389860649999999984089979996026798507799999846899788999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 33210000011232210111223322211111222222222222222222222----22222222223333322246411
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKE 154 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~----~~~d~~~~~v~~~g~~i~LT~~E 154 (236)
|+.++.+.+-+++..|+-||+.|||..+.|..++..-.++.+... +.-.... -.|+...+......-+--|++.-
T Consensus 81 TAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~-~~~~~sQ~~lD~l~~~~~k~~~~~~LPkGi~~~T 159 (224)
T COG4565 81 TAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALE-SHQQLSQKELDQLFNIQSKEQPPDDLPKGLDELT 159 (224)
T ss_pred ECCCHHHHHHHHHHCCCHHHEECCEEHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 534437899999965823220563409999999999999999986-2010279999999832254567554787767999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 688999871899737899999987
Q gi|254780893|r 155 YQMIELLSLRKNTTLTKEMFLNHL 178 (236)
Q Consensus 155 ~~lL~~L~~~~g~vvsr~~i~~~v 178 (236)
++.+.-.++.+++.+|-+++.+.+
T Consensus 160 l~~i~~~~~~~~~~~Taeela~~~ 183 (224)
T COG4565 160 LQKVREALKEPDQELTAEELAQAL 183 (224)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 999999986757764799999883
No 56
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.87 E-value=6.3e-23 Score=158.43 Aligned_cols=117 Identities=31% Similarity=0.569 Sum_probs=110.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC---CCCEEC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322---331001
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI---STPVCI 77 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~---~~pII~ 77 (236)
++||+|||++..+..+...|+..||+|..|.||.+++.+...+.+|++++|++||+|||.++|.+|+...| .+|+++
T Consensus 15 ~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~ 94 (360)
T COG3437 15 LTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVIL 94 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 14889658666899999999742641464147507788751168856776425777659999999872497656532599
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3332100000112322101112233222111112222222
Q gi|254780893|r 78 LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 78 ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
+|++++.++..+|+++||+|||.|||++.+|.+|++..++
T Consensus 95 lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q 134 (360)
T COG3437 95 LTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQ 134 (360)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 8605876999999972477775288988999999999999
No 57
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.86 E-value=2.1e-22 Score=155.22 Aligned_cols=119 Identities=32% Similarity=0.515 Sum_probs=112.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC--CCCCEECCC
Q ss_conf 599986998999999999998898999999989999999857994788311498743343111222232--233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK--ISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~--~~~pII~ls 79 (236)
|||+|+|+...+..+...|...||+|..+.++++|+..+.+.+||+||+|+.||++||+++|+++|... ..+|||++|
T Consensus 134 kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~~~ 213 (435)
T COG3706 134 KILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILLS 213 (435)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 08997480779999999987536336651598999999746898589995578766789999997244444566389995
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32100000112322101112233222111112222222222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~ 120 (236)
+.++.....+||+.|++||+.||+...+|.+|++..+++.+
T Consensus 214 ~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 214 SKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred CCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 26634789999976885167347787999999999998541
No 58
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.86 E-value=5.3e-22 Score=152.85 Aligned_cols=116 Identities=26% Similarity=0.418 Sum_probs=100.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 95999869989999999999988-98999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSE-NFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~-g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
||||+|||+...|..|...|+.. +++|. .|.||.+|++.+.+..||+|+||++||++||++++++|++..+ +||||+
T Consensus 2 irVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~~g~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~p-~PVimv 80 (340)
T PRK12555 2 MNVGIVDDSALAREALRRIIARRPDHRVLGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRRP-CPVLIV 80 (340)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC-CCEEEE
T ss_conf 8899990988999999999960999489999899999999988619999997278899987999999998789-986998
Q ss_pred CCCCC--HHCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCC
Q ss_conf 33210--0000112322101112233222---------111112222222
Q gi|254780893|r 79 SGMSS--IEDKVRGLQSGADDYISKPFNK---------EELVARIRAIVR 117 (236)
Q Consensus 79 s~~~~--~~~~~~al~~GAddyi~KP~~~---------~eL~ari~~llr 117 (236)
|+..+ .+..++|+++||.||+.||-.. ++|+.+|+++.+
T Consensus 81 Ss~~~~~~~~~~~AL~~GA~D~i~KP~~~~~~~~~~~~~~L~~ki~~~~~ 130 (340)
T PRK12555 81 SSLTEAGASITYEALGAGALDAVDKPKLGIGRGLDAYAQELLAKIDQAAR 130 (340)
T ss_pred EECCCCCHHHHHHHHHCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 50356576999999977977668478877553199999999999999864
No 59
>pfam00486 Trans_reg_C Transcriptional regulatory protein, C terminal.
Probab=99.81 E-value=4e-20 Score=141.57 Aligned_cols=77 Identities=32% Similarity=0.561 Sum_probs=73.2
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEE
Q ss_conf 33222464116889998718997378999999871887777753036678999885110678884388887820264
Q gi|254780893|r 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 (236)
Q Consensus 145 g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l 221 (236)
|++|.||++||.||.+|++|+|++|||++|++.+|+.+...++++|++||+|||+||...+..+.+|+|+||.||+|
T Consensus 1 G~~i~Lt~~E~~lL~~L~~~~~~~vsr~~l~~~iw~~~~~~~~~sl~~~I~rLR~kl~~~~~~~~~I~tv~g~GY~L 77 (77)
T pfam00486 1 GEEVELTPKEFDLLELLARNPGRVVSREELLEEVWGEDFDVDDNTVDVHISRLRKKLEDDPRDPRLIKTVRGVGYRL 77 (77)
T ss_pred CCEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 96723389999999999967997197999999963876665533099999999998754489998399848966449
No 60
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.78 E-value=3e-19 Score=136.32 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=135.4
Q ss_pred HHHHHHHHHHCC-----CEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHC
Q ss_conf 999999999889-----8999-9999899999998579947883114987433431112222322331001333210000
Q gi|254780893|r 13 AHSIELMLKSEN-----FNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIED 86 (236)
Q Consensus 13 ~~~l~~~L~~~g-----~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~ 86 (236)
+..++..|+... .+|+ .++++.||+..+....+|++++|+.||++||++++++|++..|.+.||++|.++++..
T Consensus 3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~~~v~~~LmDi~mP~~dGL~~~~~L~r~~P~vriLVLTm~d~e~~ 82 (205)
T PRK11475 3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEAR 82 (205)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 78899998418998348999505456999986288666438985389999766999999999789971899974768799
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 011232-2101112233222111112222222222222222222222222222222333332224641168899987189
Q gi|254780893|r 87 KVRGLQ-SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165 (236)
Q Consensus 87 ~~~al~-~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~ 165 (236)
.+.++. .||++|+.|....++|...+...++..+...+.. .. ....++.-.||++|.++|+++++
T Consensus 83 v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~g~~~~~~~~-----------~~-~~~~~~~~~Lt~rE~eVl~l~a~-- 148 (205)
T PRK11475 83 LIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRL-----------NN-QWYINQSRMLSPTEREILRFMSR-- 148 (205)
T ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCHHHCHHH-----------HC-CCCCCCCCCCCHHHHHHHHHHHC--
T ss_conf 99999984166888567889999999999870611313466-----------53-45677678898589999999976--
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 97378999999871887777753036678999885110
Q gi|254780893|r 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 166 g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
| .|..+|.+.+ ..+.+||++|-+++-+||.-
T Consensus 149 G--~s~~eIA~~L-----~~S~kTv~thr~~~m~KLgv 179 (205)
T PRK11475 149 G--YSMPQIAEQL-----ERNIKTIRAHKFNVMSKLGV 179 (205)
T ss_pred C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 9--9999999997-----88888999999999998299
No 61
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.77 E-value=6.9e-19 Score=134.12 Aligned_cols=114 Identities=16% Similarity=0.352 Sum_probs=98.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999889-8999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSEN-FNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g-~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
|||+|||||+..++.|+..+++.+ .++. .+.|+.+++..+....||+++||+.||++||+++++.++.. ...+|||+
T Consensus 2 ~ki~I~DDe~~~~~~l~~~l~~~~~i~~~~~~~~~~eal~~~~~~~~DllfLDI~m~~~~G~ela~~l~~~-~~~~iIFv 80 (239)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEALGAIHRLKPDVVFLDIQMPRISGLELVGMLDPE-HMPYIVFV 80 (239)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCC-CCCEEEEE
T ss_conf 49999969999999999999758798999998999999999985399999983998695999999983733-49869999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 332100000112322101112233222111112222222
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
|+++ +..+.||+.+|-|||.||++.++|...+..+.+
T Consensus 81 T~~~--e~a~~af~~~a~dYllKP~~~e~l~~~l~r~~~ 117 (239)
T PRK11697 81 TAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (239)
T ss_pred ECCH--HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 5868--999999730972665389999999999999999
No 62
>KOG0519 consensus
Probab=99.76 E-value=2.7e-19 Score=136.55 Aligned_cols=114 Identities=28% Similarity=0.482 Sum_probs=104.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCCC-CCCCCEECCC
Q ss_conf 5999869989999999999988989999999899999998-5799478831149874334311122223-2233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGFEVLRALRVA-KISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~-~~~~DlvIlD~~lp~~~G~~~~~~ir~~-~~~~pII~ls 79 (236)
|||+|||+..-+.....+|+..|..+..+.+|.+|+..+. ...||+|+||+.||.+||++.+++||+. ...+|||.+|
T Consensus 668 ~iLlvddn~vn~~Va~~~l~~~g~~v~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIvAlT 747 (786)
T KOG0519 668 KILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIVALT 747 (786)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 65785587101999998999739645742886999986389986327999757755554999999987516788779974
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321000001123221011122332221111122222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~l 115 (236)
|....+...+|+++|.|.|+.|||..+-|...++..
T Consensus 748 a~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~ 783 (786)
T KOG0519 748 ADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREF 783 (786)
T ss_pred CCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH
T ss_conf 687578899999828764674633189999999997
No 63
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.74 E-value=3.9e-18 Score=129.58 Aligned_cols=119 Identities=20% Similarity=0.239 Sum_probs=106.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 599986998999999999998898999999989999999857--994788311498743343111222232233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~--~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
+||+||||+.++......|+..||+|..+.|+.+|++.+... .||++|+| .||.++|.++.+.++...|.+|||+ |
T Consensus 701 ~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~~~p~lpVil-s 778 (831)
T PRK13837 701 TVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAIAWISKDGKRFDLVLVD-QPSLGDSQLAIAALHAAAPTLPIIL-A 778 (831)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCCEEEE-E
T ss_conf 7999859889999999999967996888689999999998389985399988-9999987999999986189974999-7
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3210000011232210111223322211111222222222222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~ 122 (236)
++........+...|...|+.|||+.++|...|+..|++.++.
T Consensus 779 g~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~aL~~~r~~ 821 (831)
T PRK13837 779 GSSLKMAAREALATAIAEILPKPISSRTLAYALRTALATARAA 821 (831)
T ss_pred CCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 6881443311022266706509999999999999998488887
No 64
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=99.73 E-value=9.2e-18 Score=127.32 Aligned_cols=105 Identities=20% Similarity=0.328 Sum_probs=93.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 22222222222222222233333222464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 124 ~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
...+.++++.+|+..+.+..+|+.+.|+++|+++|.+|++++|+||||++|+++||++..... .+|.++|+.||+-|.+
T Consensus 6 ~~~~~f~~~~l~~~~~~L~r~~~~v~l~~~~~~lL~~L~e~~geVvsk~eL~~~VW~~~~v~~-~~Ltq~I~~LRr~L~d 84 (148)
T COG3710 6 NDYFIFGPFVLDPKLRSLLRGDEVVKLGPRELKLLSLLLERAGEVVSKDELLDAVWPGRIVTV-NTLTQAISALRRALRD 84 (148)
T ss_pred CCEEEECCEEECCCCCEEEECCEEEEECHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHC
T ss_conf 634874768861765769878968886667889999998546860529999998579962644-5499999999998634
Q ss_pred CCCCCCEEEEECCCEEEECCCCCCCC
Q ss_conf 67888438888782026456887545
Q gi|254780893|r 204 AAGGKNYIETVWGRGYVLRENAKDET 229 (236)
Q Consensus 204 ~~~~~~~I~tvrG~GY~l~~~~~~e~ 229 (236)
......+|.||++.||+|..+....+
T Consensus 85 ~~~~~~~I~TvPrrGyk~~~~v~~~~ 110 (148)
T COG3710 85 IGDGHRLIATVPRRGYKFTADVIIII 110 (148)
T ss_pred CCCCCEEEEEECCCCEEECCCEEEEC
T ss_conf 68766389983785469737569951
No 65
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.72 E-value=1.8e-17 Score=125.55 Aligned_cols=167 Identities=22% Similarity=0.402 Sum_probs=131.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 99986998999999999998898999999989999999857994788311498743343111222232233100133321
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
.||||||..+...|...|+..||.|..+.+..+++.......|.-.++|+.|.+.+|+.+++.||+..+.+.||+||++.
T Consensus 12 lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~ 91 (182)
T COG4567 12 LLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTGYA 91 (182)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 58961876999999999860686257614499999998517985288986406887468999998249764389884511
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 00000112322101112233222111112222222222222222222222222222222333332224641168899987
Q gi|254780893|r 83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 (236)
Q Consensus 83 ~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~ 162 (236)
+....+.+.+.||++|+.||-+.+...+ +++++..... +...+.+.+..+-|++
T Consensus 92 sIATAV~AvKlGA~~YLaKPAdaDdi~a---Al~~~~~d~~-----------------~~~~~~pmS~~rl~WE------ 145 (182)
T COG4567 92 SIATAVEAVKLGACDYLAKPADADDILA---ALLRREPDED-----------------TAPPENPMSADRLRWE------ 145 (182)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHCCCCCC-----------------CCCCCCCCCHHHHHHH------
T ss_conf 7999999998624554079777689999---9860278754-----------------5799999745676699------
Q ss_pred HCCCCCCCHHHHHHHH--CCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 1899737899999987--188777775303667899988511067
Q gi|254780893|r 163 LRKNTTLTKEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAA 205 (236)
Q Consensus 163 ~~~g~vvsr~~i~~~v--w~~~~~~~~~tld~~I~rLRkKL~~~~ 205 (236)
.|.+.+ .+++.....|.+.+|-+.|-+||.+-+
T Consensus 146 ----------hIqrvl~e~~~NiSeTARrL~MHRRTLqRkL~KR~ 180 (182)
T COG4567 146 ----------HIQRVLEECEGNISETARRLNMHRRTLQRKLAKRA 180 (182)
T ss_pred ----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ----------99999999377778999996213999999974148
No 66
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.72 E-value=1.8e-18 Score=131.66 Aligned_cols=112 Identities=26% Similarity=0.424 Sum_probs=102.9
Q ss_pred EEEECCCHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC-CC----CCCCCCCCCCCCCCCCCEE
Q ss_conf 99986998999999999998-898999999989999999857994788311498-74----3343111222232233100
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DI----PGFEVLRALRVAKISTPVC 76 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~-~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp-~~----~G~~~~~~ir~~~~~~pII 76 (236)
+||||||..++..|+ +.= .+|++..|.|-++|+..+....|-+|.||++|| +. .|+..+.+|=+..|.+.||
T Consensus 1 LLiVeDD~glQKQLk--Ws~G~~Ye~~~A~DR~sAiA~vRRheP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~TKVI 78 (451)
T TIGR02915 1 LLIVEDDLGLQKQLK--WSFGADYEVAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVI 78 (451)
T ss_pred CCEEECCHHHHHHHH--HHCCCCCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 924536866567876--415788403553475789998605699647736755789887458999999999638980489
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1333210000011232210111223322211111222222
Q gi|254780893|r 77 ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 77 ~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
++|++++.++.++|..+||-||..||||+++|..-|+..+
T Consensus 79 ViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf 118 (451)
T TIGR02915 79 VITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAF 118 (451)
T ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9866898388999964375101357875789999999988
No 67
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=99.72 E-value=1.6e-17 Score=125.89 Aligned_cols=77 Identities=36% Similarity=0.605 Sum_probs=69.7
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEE
Q ss_conf 332224641168899987189973789999998718877-77753036678999885110678884388887820264
Q gi|254780893|r 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 (236)
Q Consensus 145 g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~-~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l 221 (236)
|+++.||++|+.||.+|++|+|+++|+++|++.+|+.+. ...++++++||++||+||...++.+.+|+|++|.||+|
T Consensus 1 g~~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~~l~~~I~~LR~kl~~~~~~~~~i~t~~g~GY~l 78 (78)
T smart00862 1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLEDDGANPRLIETVRGVGYRL 78 (78)
T ss_pred CCEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 957324899999999998479962969999987628887888860278999999999764589999599837956449
No 68
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.71 E-value=4.2e-18 Score=129.39 Aligned_cols=115 Identities=27% Similarity=0.398 Sum_probs=107.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCC--------CC
Q ss_conf 59998699899999999999889899999998999999985-7994788311498743343111222232--------23
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAK--------IS 72 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~--------~~ 72 (236)
|||+|||++.-...-+.+|+..||+|..|.++++|+.++.+ +.||+++||++|||.||.++.+++|... ..
T Consensus 763 ~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~p 842 (1052)
T TIGR02956 763 RVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDEP 842 (1052)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 13246447477999999984279447208549999999854887675455157889865678999999997320444567
Q ss_pred CCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31001333210000011232210111223322211111222222
Q gi|254780893|r 73 TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 73 ~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
+|.|-+|||-=.++.-.-+.+|=|+||.||+..++|.+-|..+|
T Consensus 843 ~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 843 VKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 77222113344776999975302663479987788999999987
No 69
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.71 E-value=1.6e-17 Score=125.85 Aligned_cols=116 Identities=32% Similarity=0.584 Sum_probs=103.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 9599986998999999999998898999999989-999999857-99478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE-DGIELCKFY-EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~-eal~~~~~~-~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
++||+|||+...+..+...|+..|+.+..+.++. +++..+... .||++++|+.||++||+++++.+|+..+.+|++++
T Consensus 6 ~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~~~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pvv~~ 85 (130)
T COG0784 6 LRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRARGPNIPVILL 85 (130)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 88999789999999999999877978999578399999998627899999980688788889999999971899968999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 33210000011232210111223322211-111222222
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEE-LVARIRAIV 116 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~e-L~ari~~ll 116 (236)
|++.+.....+++..|+++|+.||+...+ |..+++..+
T Consensus 86 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 86 TAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 867867659999976876897589987999999999998
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.70 E-value=3.8e-17 Score=123.66 Aligned_cols=102 Identities=23% Similarity=0.408 Sum_probs=89.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 22222222222222222223333322246411688999871899737899999987188777775303667899988511
Q gi|254780893|r 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 123 ~~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
....+.||++.+|.+ +.+..+|+.+.+.|++|.+|.+|.+|.|++||+++|++.||++...+++ ++.++|+-+||.|.
T Consensus 10 ~n~qy~F~dFvLd~d-r~L~r~~~~v~I~Pqvf~lL~lLvenrdrvVSKdELi~~VW~griVSEs-tLtsrI~a~RkaLg 87 (553)
T PRK12370 10 SNKKFVFDDFILNMD-GSLLRSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEE-SLTRCIYALRRILS 87 (553)
T ss_pred CCCEEEECCEEECCC-HHEEECCCEECCCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCEECHH-HHHHHHHHHHHHHC
T ss_conf 554010145356540-2200059641348479999999984767537499999983599620388-99999999999858
Q ss_pred HCCCCCCEEEEECCCEEEECCCCCC
Q ss_conf 0678884388887820264568875
Q gi|254780893|r 203 NAAGGKNYIETVWGRGYVLRENAKD 227 (236)
Q Consensus 203 ~~~~~~~~I~tvrG~GY~l~~~~~~ 227 (236)
+. +...+|+||+|.||+|..+...
T Consensus 88 D~-~eqr~IrTv~gkGyRF~~~V~~ 111 (553)
T PRK12370 88 ED-KEHRYIETLYGQGYRFNRPVVV 111 (553)
T ss_pred CC-CCCEEEEHHCCCCEEECCCCCC
T ss_conf 75-4450244103784242564021
No 71
>PRK09191 two-component response regulator; Provisional
Probab=99.68 E-value=6e-17 Score=122.43 Aligned_cols=111 Identities=21% Similarity=0.331 Sum_probs=92.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 599986998999999999998898999-9999899999998579947883114987-43343111222232233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~~~~~pII~ls 79 (236)
||||||||..++..|+..|+..||+|. .+.++.+|++++...+||++++|++|++ +||++.++.|++. ..+|+||+|
T Consensus 139 rILIVEDE~lIAmdLe~~l~~lG~~V~GiA~t~~eAl~la~~~~PDlvL~DI~L~d~~sGIdaa~~I~~~-~~iPvIFiT 217 (261)
T PRK09191 139 SVLIIEDEPIIAMDLEQLVESLGHRVVGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKT-FDVPVIFIT 217 (261)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH-CCCCEEEEC
T ss_conf 8799858599999999999987996787627899999997425989899953479998799999999982-899989977
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321000001123221011122332221111122222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~l 115 (236)
++.+.--.-..-+- --+|.|||.++.+.+.|.-.
T Consensus 218 Ayperlltg~~~ep--~~li~KPf~~~~v~aai~qA 251 (261)
T PRK09191 218 AFPERLLTGERPEP--AFLITKPFQPDTVKAAISQA 251 (261)
T ss_pred CCHHHHCCCCCCCC--CEEECCCCCHHHHHHHHHHH
T ss_conf 78465302788887--40356989889999999999
No 72
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.60 E-value=2e-15 Score=113.22 Aligned_cols=116 Identities=29% Similarity=0.491 Sum_probs=99.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999889-8999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSEN-FNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g-~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
||||+|||....|..++..|...+ +++. .+.|+.++++.+....||++.||++||.+||+++++.|.+. ..+||||+
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~-~p~pVimv 80 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRL-RPLPVIMV 80 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC-CCCCEEEE
T ss_conf 47999858199999999998308973799733787999999972299789972566445479999998447-99868999
Q ss_pred CCCCC--HHCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCC
Q ss_conf 33210--0000112322101112233222---------111112222222
Q gi|254780893|r 79 SGMSS--IEDKVRGLQSGADDYISKPFNK---------EELVARIRAIVR 117 (236)
Q Consensus 79 s~~~~--~~~~~~al~~GAddyi~KP~~~---------~eL~ari~~llr 117 (236)
|+-.+ .+...++++.||-||+.||... ++|..+|++.-+
T Consensus 81 sslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~~l~~kv~~~~~ 130 (350)
T COG2201 81 SSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAELLIEKVRAAAR 130 (350)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 51452137999999845742132178765444667889999999998752
No 73
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.58 E-value=8.8e-15 Score=109.39 Aligned_cols=101 Identities=22% Similarity=0.386 Sum_probs=91.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 22222222222222222233333222464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 124 ~~~~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
+..+.+++|.|.+....++.+|+++.+-+|=..||.+||+|+|+|+||+||+++||++. .+++..|..-|.-|||-|.+
T Consensus 3 ~~~F~I~dWl~~p~ENkl~r~drev~iEpRLinLL~Fla~hpg~VfsRDELI~~VW~Ga-IvTDQVVTQSIFELRKiLKd 81 (512)
T PRK10153 3 QPVFRIGDWLLTPSENQLSRQDREVTLEPRLINLLVFLAQHSGEVFSRDELIDHVWDGA-IVTDQVVTQSIFELRKSLRD 81 (512)
T ss_pred CCEEEECCEEEECCCCEEEECCCEEEECHHHHHHHHHHHCCCCCEECHHHHHHHHCCCC-EECCCHHHHHHHHHHHHHHC
T ss_conf 76699635799626673666698798647789999998519995343999999862787-41130255889999999863
Q ss_pred C-CCCCCEEEEECCCEEEECCCC
Q ss_conf 6-788843888878202645688
Q gi|254780893|r 204 A-AGGKNYIETVWGRGYVLRENA 225 (236)
Q Consensus 204 ~-~~~~~~I~tvrG~GY~l~~~~ 225 (236)
. ..+..+|.||+..||||..++
T Consensus 82 g~~~~~~YIvTVPKRGYKLvA~V 104 (512)
T PRK10153 82 GREDNPEYIVTVPKRGYKLVAPV 104 (512)
T ss_pred CCCCCCCEEEEECCCCCEECCCE
T ss_conf 88678872998368863124665
No 74
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.44 E-value=8.2e-15 Score=109.57 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=98.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
+-||.|.||+.....-...=+...|.|..+.+...|++.+....+||||.|..||++||+++++.+|+..|.+|+|++|+
T Consensus 18 ~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe~~p~lP~Il~t~ 97 (674)
T PRK13558 18 IGVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQTHAEFPVVVVPT 97 (674)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 89999468887775234566677421276323888986531589876996565788867999999861389998899956
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21000001123221011122332221111122222
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~l 115 (236)
+++++-..+|+.+|+++|+ |+..++..+.+.+.
T Consensus 98 ~gsE~vas~AI~AGvt~Yl--p~~~~~~~~~~~~~ 130 (674)
T PRK13558 98 AVDEDVARRAVDADATGLV--PAVSEDATAAIADR 130 (674)
T ss_pred CCCHHHHHHHHHHCHHHHC--CCCCHHHHHHHHHH
T ss_conf 7858999998751636433--44717689999999
No 75
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=5.6e-13 Score=98.53 Aligned_cols=115 Identities=20% Similarity=0.427 Sum_probs=100.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 9599986998999999999998-898999-99998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKS-ENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~-~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
|+|+++||+...+..+...+.. .++++. .+.++.++++.+....+|++++|+.||+++|+++.+.|+...+..+|+|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivfv 81 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVFV 81 (244)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEE
T ss_conf 85177147676799999998874421111331230317888760257769997237652449999986156988539999
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 332100000112322101112233222111112222222
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
|++++ ..+.+|+..|-||+.||++...|.+.++.+.+
T Consensus 82 t~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 82 TAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred EEHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 86154--32333133466774285426899999999888
No 76
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.30 E-value=9e-13 Score=97.29 Aligned_cols=116 Identities=20% Similarity=0.335 Sum_probs=99.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 9599986998999999999998898999-999989999999857994788311498743343111222232233100133
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
+|||+++|+...+..+...|...||.+. ++.++.++........||+||+|+.+|..| ..-.-.+.+.++..||+++|
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd-~~e~~~~~~~~~~~piv~lt 84 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRD-IIEALLLASENVARPIVALT 84 (194)
T ss_pred CCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHCCCCCCEEEEE
T ss_conf 53034241135556789899875973876541344750677852998799966787732-89998986058998789997
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32100000112322101112233222111112222222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llr 117 (236)
++++....-.+.++|+..||+||+++.-|...+.....
T Consensus 85 ~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~s 122 (194)
T COG3707 85 AYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVS 122 (194)
T ss_pred CCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 16785899999973874988347654210479999999
No 77
>PRK11906 transcriptional regulator; Provisional
Probab=99.24 E-value=2.4e-11 Score=88.68 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCE
Q ss_conf 22233333222464116889998718997378999999871887777753036678999885110678884388887820
Q gi|254780893|r 139 KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218 (236)
Q Consensus 139 ~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~G 218 (236)
..+..+++.+...+||+.+|-+|+...|++||+++|++.||+....+++ ++.--|+-||+-|.+. +...+|+||+|.|
T Consensus 21 giL~~~nk~v~IPpKElgVLilLLesAGelVsKd~iid~VW~~~~VseE-SLTRCIYaLRril~e~-k~~RyIeTvYgkG 98 (458)
T PRK11906 21 GILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDE-SLTRCIYSLRCIFEKI-GYDRCIETIYRKG 98 (458)
T ss_pred EEEECCCCEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHHHHH-CCCCEEEEHHCCC
T ss_conf 0566257466018688878998875267166098899985257755731-3889999999998650-5661552200475
Q ss_pred EEECCCC
Q ss_conf 2645688
Q gi|254780893|r 219 YVLRENA 225 (236)
Q Consensus 219 Y~l~~~~ 225 (236)
|||.-++
T Consensus 99 YRFs~pV 105 (458)
T PRK11906 99 YRFSGQV 105 (458)
T ss_pred EEEECCE
T ss_conf 2650224
No 78
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.13 E-value=7.3e-11 Score=85.80 Aligned_cols=116 Identities=31% Similarity=0.485 Sum_probs=101.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC--CCCCEECCC
Q ss_conf 599986998999999999998898999999989999999857994788311498743343111222232--233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK--ISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~--~~~pII~ls 79 (236)
+|++++|+......+...|... |.+....++.+++.......||++++|..+++.+|+.++..+|... ..+|++.++
T Consensus 157 ~il~v~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~d~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~i~~~~ 235 (457)
T PRK09581 157 RILLVDDDVSQAERIANILKEE-FRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPILLLV 235 (457)
T ss_pred EEEEECCCHHHHHHHHHHHHHH-CCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 1999879679999999997533-246885486999987435797689975656766468999999714343573299995
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321000001123221011122332221111122222222
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr 118 (236)
..++....+++++.|++||+.+|++..|+.+|+...++|
T Consensus 236 ~~~~~~~~~~~~~~g~~d~~~~~~~~~e~~~r~~~~~~~ 274 (457)
T PRK09581 236 DEDEDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred CCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 688616676664146522884378627555879999998
No 79
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=98.98 E-value=2.8e-09 Score=76.23 Aligned_cols=55 Identities=35% Similarity=0.530 Sum_probs=53.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 9599986998999999999998898999999989999999857994788311498
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp 55 (236)
||||+||||...+..++..|+..||.|..+.+|.++++.+....||++++|+.||
T Consensus 1 ~kVLivdD~~~~~~~l~~~l~~~g~~v~~~~~g~~~~~~~~~~~~dlil~D~~mP 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55 (55)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9899993799999999999997899999988999999999749999999967687
No 80
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.90 E-value=4.7e-10 Score=80.95 Aligned_cols=92 Identities=29% Similarity=0.496 Sum_probs=83.2
Q ss_pred CEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999899999998579947883114987433431112222322331001333210000011232210111223322
Q gi|254780893|r 25 FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 (236)
Q Consensus 25 ~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~ 104 (236)
+.|..+.+|..++.......||.+++|+.||+++|+++|+.+++.. .+ ++++|+.++....++++++||++++.||.+
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~~-~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (435)
T COG3706 13 KEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEP-AT-VVMVTALDDSAPRVRGLKAGADDFLTKPVN 90 (435)
T ss_pred HHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCC-CC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 5463425427799997448987487410068867301998763587-51-699860378777556776313441367777
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 21111122222222
Q gi|254780893|r 105 KEELVARIRAIVRR 118 (236)
Q Consensus 105 ~~eL~ari~~llrr 118 (236)
...+..|.+.+.+.
T Consensus 91 ~~~~~~r~~~l~~~ 104 (435)
T COG3706 91 DSQLFLRAKSLVRL 104 (435)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 17788752663144
No 81
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=98.73 E-value=4.8e-08 Score=68.87 Aligned_cols=95 Identities=20% Similarity=0.364 Sum_probs=79.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 22222222222222233333222464116889998718997378999999871887777753036678999885110678
Q gi|254780893|r 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG 206 (236)
Q Consensus 127 ~~~g~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~ 206 (236)
+...+-.+....+.+-.+|+...|++.-..+|..|+.++|+||||.+|+..+=+. ..+++.+++-|.|||..|.
T Consensus 284 ~~~~gh~l~irg~~v~vdg~~~~l~p~~~a~lr~La~~pG~VvsR~~ll~~lpg~--~~d~Have~av~RLR~alg---- 357 (381)
T PRK07239 284 LRAAGHRLEIRGHAVLVDGEVKPLSPAPMALLRALAARPGRVVSRADLLRALPGG--GTDEHAVETAVARLRTALG---- 357 (381)
T ss_pred EEECCCEEEEEEEEEEECCEEEECCCHHHHHHHHHHHCCCCEECHHHHHHHCCCC--CCCHHHHHHHHHHHHHHCC----
T ss_conf 7636847998423899899875469537999999973899667399999748899--9870689999999998559----
Q ss_pred CCCEEEEECCCEEEECCCCCC
Q ss_conf 884388887820264568875
Q gi|254780893|r 207 GKNYIETVWGRGYVLRENAKD 227 (236)
Q Consensus 207 ~~~~I~tvrG~GY~l~~~~~~ 227 (236)
.+..|.||=..||+|.-+-.+
T Consensus 358 ~~~~v~TVvKRGYRLa~~~~~ 378 (381)
T PRK07239 358 DPKLVQTVVKRGYRLAVDPRD 378 (381)
T ss_pred CCCCEEEEECCCEEECCCCCC
T ss_conf 986168872242453337766
No 82
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.32 E-value=1.3e-06 Score=60.15 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=80.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC-CCCC-CEECC
Q ss_conf 959998699899999999999889899999998999999985799478831149874334311122223-2233-10013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA-KIST-PVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~-~~~~-pII~l 78 (236)
++||++|++...+..+...|..+|+.|..+.+..+. ...+||++++|+.+|..++.+........ .+.. +++++
T Consensus 537 ~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~~~~l----~~~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~il~ 612 (920)
T PRK11107 537 KRLLYVEPNSLAAQATLDLLSETPLEVTYSPTLSQL----PEAHYDYLLLGCPVTFREPLTMLHERLAKAKSMTDFLILA 612 (920)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHH----HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 769997697789999999999749645751788775----1368887996166666540667899986300357846997
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3321000001123221011122332221111122
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari 112 (236)
....+....-.....|++.|+.||+....|...+
T Consensus 613 ~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L 646 (920)
T PRK11107 613 LPCHEQVNAEQLKQPGADACLSKPLSETRLLPAL 646 (920)
T ss_pred ECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHH
T ss_conf 1564345578876425302112777688999987
No 83
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.02 E-value=1.1e-05 Score=54.66 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=75.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
|||+||||...+..+...|+=.|.++..+.+.+-..........-++|+...++ +..+.++.+....|.+|+++++..
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~--~~~~~l~~l~~~~p~~Pvlllg~~ 78 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALLSSRWEALAVILGSVS--GLADLLKALAKWDPHLPVLLLGEH 78 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCC--CHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 989986888999979999986499649954889889886378852999967852--099999999964889999998788
Q ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1000001123221011122332221111122
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPFNKEELVARI 112 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~~~~eL~ari 112 (236)
++.... ...-+-+..|++...|..-+
T Consensus 79 ~~~~~~-----~nvvg~Le~Pl~Y~qL~daL 104 (109)
T pfam06490 79 DSAAEL-----ANVIGELEEPLNYPQLTDLL 104 (109)
T ss_pred CCHHHC-----CCEEEEECCCCCHHHHHHHH
T ss_conf 752120-----55258707889879999999
No 84
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=97.85 E-value=5.7e-05 Score=50.33 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=63.0
Q ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 2233333222-46411688999871899737899999987188777775-303667899988511067888438888782
Q gi|254780893|r 140 TVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGR 217 (236)
Q Consensus 140 ~v~~~g~~i~-LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~-~tld~~I~rLRkKL~~~~~~~~~I~tvrG~ 217 (236)
.+..+|..+. .+++-..+|.+|+-+++++|||+.|...+|........ .+|+..|++||+-+. ....|-+.-|-
T Consensus 11 ~i~~dg~~v~~~~~kkrAlla~L~l~~n~~vsRe~l~~llWe~~~~~~Ar~nLR~~l~~lRk~l~----~~~~il~t~~~ 86 (280)
T COG3629 11 RISLDGVKVAVGAPKKRALLAYLILSRNKPVSREKLAGLLWEDSDPSRARANLRTTLHNLRKLLG----DGDVILATEGP 86 (280)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC----CCCEEEECCCC
T ss_conf 78736975546682778999999974788625999997635889826789899999999997348----86515644887
Q ss_pred EEEECCCCC
Q ss_conf 026456887
Q gi|254780893|r 218 GYVLRENAK 226 (236)
Q Consensus 218 GY~l~~~~~ 226 (236)
||.|.+++.
T Consensus 87 ~~~L~~~~~ 95 (280)
T COG3629 87 GVTLNPGAD 95 (280)
T ss_pred CEEECCCCC
T ss_conf 357557644
No 85
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=97.12 E-value=0.00047 Score=44.83 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCC
Q ss_conf 9999999999889899999998999999985-799478831149874334311122223223310013332100000112
Q gi|254780893|r 12 LAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRG 90 (236)
Q Consensus 12 ~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~a 90 (236)
....|...|++.||+|..+.+..+++..+.+ ....++|+|+ +....+++..||..+..+||.+++...+.++.-..
T Consensus 5 ~~~~l~~~l~~~~~~vv~~~~~~d~~~~~~~~~~i~avil~~---~~~~~~ll~~ir~~n~~lPvFl~~~~~~~~~vp~~ 81 (111)
T pfam03709 5 ASRELAEALEATGREVVDATSTDDLLSLIETFTDIAAVVLSW---DDEARGLLDEIRRRNFDLPVFLLAETRTSEDVPLD 81 (111)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEE---CHHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCHH
T ss_conf 589999999978988997487899999998387876899984---60689999999974789998988441257509999
Q ss_pred CCCCCCCCCC
Q ss_conf 3221011122
Q gi|254780893|r 91 LQSGADDYIS 100 (236)
Q Consensus 91 l~~GAddyi~ 100 (236)
.-...+.|+-
T Consensus 82 ~l~~i~gfi~ 91 (111)
T pfam03709 82 VLREIDGFIE 91 (111)
T ss_pred HHHHHHHHHH
T ss_conf 9998878673
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.11 E-value=0.00066 Score=43.94 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 22464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 148 i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
..||++|.++|.+|++ | .|..+|.+.+ .++.+||+.|+++|.+||+-
T Consensus 837 ~~LT~RE~eVL~lLa~--G--lSNkeIA~~L-----~IS~~TVK~HlrnIy~KLgV 883 (903)
T PRK04841 837 SPLTQREWQVLGLIYS--G--YSNEQIAGEL-----DVAATTIKTHIRNLYQKLGI 883 (903)
T ss_pred CCCCHHHHHHHHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 8979999999999976--8--9999999881-----99876999999999856599
No 87
>PRK09954 hypothetical protein; Provisional
Probab=97.01 E-value=0.0018 Score=41.29 Aligned_cols=53 Identities=9% Similarity=0.011 Sum_probs=25.0
Q ss_pred HCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEE
Q ss_conf 18997378999999871887777753036678999885110678884388887820264
Q gi|254780893|r 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 (236)
Q Consensus 163 ~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l 221 (236)
.+..-+...+.=++.+||....... ....-...|.++ +.+..|.|.-..|-.+
T Consensus 232 ~~id~l~pN~~Eae~L~G~~i~~~~-d~~~aa~~L~~~-----Gvk~ViITlG~~G~~~ 284 (362)
T PRK09954 232 AHIHTLKPTQPELEILWGQAITSDA-DRNAAVNALHQQ-----GVQQIFVYLPDESVFC 284 (362)
T ss_pred HCCCEECCCHHHHHHHCCCCCCCHH-HHHHHHHHHHHC-----CCCEEEEECCCCEEEE
T ss_conf 4285605778999987099889868-999999999970-----8977999818944999
No 88
>pfam00196 GerE Bacterial regulatory proteins, luxR family.
Probab=96.92 E-value=0.0012 Score=42.28 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.||++|.++|.++++ | .|..+|.+.+ ..+.+||+.|++++++||.-
T Consensus 3 ~LT~RE~~il~~l~~--G--~s~~eIA~~L-----~is~~TV~~h~~~i~~Kl~v 48 (58)
T pfam00196 3 SLSPREREVLRLLAA--G--KSNKEIADIL-----GISEKTVKVHRSNIMRKLNV 48 (58)
T ss_pred CCCHHHHHHHHHHHH--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 779999999999980--7--9999999997-----88899999999999998099
No 89
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=96.88 E-value=0.0014 Score=41.92 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 150 LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 150 LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
||++|.++|.++++ | .|..+|.+.+ ..+.+||+.|++++++||.-
T Consensus 1 LT~rE~~il~~~~~--G--~s~~eIA~~L-----~is~~TV~~~~~~i~~Kl~~ 45 (57)
T cd06170 1 LTPREREVLRLLAE--G--KTNKEIADIL-----GISEKTVKTHLRNIMRKLGV 45 (57)
T ss_pred CCHHHHHHHHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 98899999999980--7--9999999998-----97899999999999998689
No 90
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=96.62 E-value=0.0029 Score=40.05 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.||++|.++|.++++ | .|..+|.+.+ ..+.+||+.|++++++||.-
T Consensus 3 ~LT~rE~~il~~l~~--G--~s~~eIA~~L-----~is~~TV~~~~~~i~~Kl~v 48 (58)
T smart00421 3 SLTPREREVLRLLAE--G--LTNKEIAERL-----GISEKTVKTHLSNIMRKLGV 48 (58)
T ss_pred CCCHHHHHHHHHHHH--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 618999999999981--7--9999999898-----97898999999999998489
No 91
>TIGR03020 EpsA transcriptional regulator EpsA. Proteins in this family include a C-terminal LuxR transcriptional regulator domain (pfam00196). These proteins are positioned proximal to either EpsH-containing exopolysaccharide biosynthesis operons of the Methylobacillus type, or the associated PEP-CTERM-containing genes.
Probab=96.60 E-value=0.003 Score=40.01 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.||++|.++|.++++ |+ |..+|.+.+ ..+.+||+.|++++.+||.-
T Consensus 190 lLT~RE~EVL~~va~--G~--sn~eIA~~L-----~iS~~TVk~H~~~i~~KL~v 235 (247)
T TIGR03020 190 LITAREAEILAWVRD--GK--TNEEIAAIL-----GISSLTVKNHLQHIFKKLDV 235 (247)
T ss_pred CCCHHHHHHHHHHHC--CC--CHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 999899999999987--99--999999994-----97999999999999998099
No 92
>PRK11886 biotin--protein ligase; Provisional
Probab=96.58 E-value=0.0086 Score=37.21 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=10.8
Q ss_pred HCCCCCCCHHHHHHHH
Q ss_conf 1899737899999987
Q gi|254780893|r 163 LRKNTTLTKEMFLNHL 178 (236)
Q Consensus 163 ~~~g~vvsr~~i~~~v 178 (236)
...|..++|.+++..+
T Consensus 226 ~~~g~~~~r~~ll~~l 241 (319)
T PRK11886 226 QEAGPTIDRNQLAAEL 241 (319)
T ss_pred HHHCCCCCHHHHHHHH
T ss_conf 8717989999999999
No 93
>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.
Probab=96.55 E-value=0.0035 Score=39.58 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 2224641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 147 ~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.-.||++|.+.|..++. |+ |..||...+ ..+.+||+.|+.+.|+||.-.
T Consensus 169 ~~~LT~RE~E~L~w~A~--Gk--t~~eIa~iL-----~iSe~TV~~hl~~a~~KLga~ 217 (232)
T TIGR03541 169 AGVLSEREREVLAWTAL--GR--RQADIAAIL-----GISERTVENHLRSARRKLGVA 217 (232)
T ss_pred CCCCCHHHHHHHHHHHC--CC--CHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
T ss_conf 99989899999999987--99--999999996-----989999999999999984899
No 94
>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=96.47 E-value=0.0066 Score=37.92 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEE
Q ss_conf 11688999871899737899999987188777775303667899988511067888438888782026
Q gi|254780893|r 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 (236)
Q Consensus 153 ~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~ 220 (236)
+.+.+|.+|.++.+. +|-++|.+.+ .++.+||..+|..|+... ..|.+.+|.||+
T Consensus 1 R~~~il~~L~~~~~~-vt~~~La~~l-----~VSr~TV~rdi~~L~~~G-------~~I~s~~g~GY~ 55 (55)
T pfam08279 1 RLLQILELLLQAREP-ISGQELAEKL-----GVSRRTIRRDIKALEALG-------VPIESEPGRGYR 55 (55)
T ss_pred CHHHHHHHHHHCCCC-CCHHHHHHHH-----CCCHHHHHHHHHHHHHCC-------CCEEECCCCCCC
T ss_conf 989999999976999-1899999996-----988999999999999889-------978846899998
No 95
>PRK13566 anthranilate synthase; Provisional
Probab=96.33 E-value=0.011 Score=36.64 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=58.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCC-CCCCCCCEEC
Q ss_conf 959998699899999999999889899999998999999985799478831149--8743343111222-2322331001
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALR-VAKISTPVCI 77 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir-~~~~~~pII~ 77 (236)
+|||+||....+-..|..+|.+.|.+|.+..++ .+.+.+....||+|++.-+. |.-.|. ...+. .....+||+-
T Consensus 524 ~rVLlVDn~DSFvhtLa~YlrqlGAeV~vvR~d-~~~~~l~~~~pD~vvlSPGPG~P~d~g~--~~~i~~~~~~~iPilG 600 (724)
T PRK13566 524 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYP-VAEEILDRVNPDLVVLSPGPGRPEDFDC--KATIDAALARNLPIFG 600 (724)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCEEEEEECC-CCHHHHHHHCCCEEEECCCCCCCHHCCC--HHHHHHHHHCCCCEEE
T ss_conf 579998465327999999999819879998189-8767776318898998799979000558--5999999857998799
Q ss_pred CC
Q ss_conf 33
Q gi|254780893|r 78 LS 79 (236)
Q Consensus 78 ls 79 (236)
+.
T Consensus 601 VC 602 (724)
T PRK13566 601 VC 602 (724)
T ss_pred EC
T ss_conf 77
No 96
>PRK09863 putative frv operon regulatory protein; Provisional
Probab=96.24 E-value=0.014 Score=35.93 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=34.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 59998699899999999999889--8999999989999999857994788311498
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSEN--FNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g--~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp 55 (236)
+++++.+-...+..++..+++.- +.+..+.+..+.........||+||.-+.+|
T Consensus 351 ~ivv~~~~~~~a~l~~~~i~~~~~~i~i~~v~sl~~~e~~~~~~~~DlIIsTv~~~ 406 (585)
T PRK09863 351 PILLLADQNSIATINQLIIEQKVLNIRVIIVRSLSELEAIREEIEPLLIINNSHYP 406 (585)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 57999468069999999998752771389997689888776336988899688665
No 97
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=96.12 E-value=0.014 Score=36.02 Aligned_cols=101 Identities=21% Similarity=0.290 Sum_probs=70.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC-CCCCCEECCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223-22331001333
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA-KISTPVCILSG 80 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~-~~~~pII~ls~ 80 (236)
+||+||.|-.+=+.|.+||++-|=.|.+..++-. -.++...+||||||--+...=.-|++...|.+. ...+||--+.=
T Consensus 526 ~iLLvDHeDSFVHTLAnY~RqTGAsVTTlRh~~a-e~~fd~~rPDLVVLSPGPGrP~dFdv~~Ti~aa~ar~lP~FGVCL 604 (726)
T TIGR01815 526 RILLVDHEDSFVHTLANYLRQTGASVTTLRHSFA-EELFDEERPDLVVLSPGPGRPKDFDVKETIKAALARDLPVFGVCL 604 (726)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHH-HHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 7999854754377778887634875530430478-999732799889868731238754478899999972898577413
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21000001123221011122332221
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~KP~~~~ 106 (236)
..+..+++|- |+=+.+..|..-+
T Consensus 605 --GLQg~vEafG-G~L~vL~~P~HGK 627 (726)
T TIGR01815 605 --GLQGLVEAFG-GELDVLAIPVHGK 627 (726)
T ss_pred --HHHHHHHHHC-CCCCCCCCCCCCC
T ss_conf --4689998746-7213578887886
No 98
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=95.94 E-value=0.012 Score=36.40 Aligned_cols=48 Identities=10% Similarity=0.186 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 222464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 147 ~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
...||++|.+.|+..+. |+ |..||..-+ ..+.+||+-|+++.++||.-
T Consensus 177 ~~~LT~RE~E~L~W~A~--GK--Ts~EIa~IL-----~ISe~TV~fHl~na~~KL~a 224 (240)
T PRK10188 177 EMNFSKREKEILKWTAE--GK--TSAEIAMIL-----SISENTVNFHQKNMQKKFNA 224 (240)
T ss_pred CCCCCHHHHHHHHHHHC--CC--CHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 78899899999999977--99--999999883-----99999999999999999589
No 99
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.89 E-value=0.0079 Score=37.43 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 22246411688999871899737899999987188777775303667899988511
Q gi|254780893|r 147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 147 ~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
++.||.+|.++|.+.++ | .|.++|.+.+ ..+..||++|+++|..||.
T Consensus 829 e~~Ls~RE~eVL~Lia~--G--~SN~eIa~~L-----~isl~TVKtH~rniy~KLg 875 (894)
T COG2909 829 ELPLSQRELEVLGLIAQ--G--LSNEEIAQEL-----FISLTTVKTHIRNIYQKLG 875 (894)
T ss_pred CCCCCHHHHHHHHHHHC--C--CCHHHHHHHH-----HHHHHHHHHHHHHHHHHHC
T ss_conf 56763889999999982--5--7778999998-----8989889999999998848
No 100
>PRK13870 transcriptional regulator TraR; Provisional
Probab=95.28 E-value=0.032 Score=33.81 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=42.8
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 32224641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 146 ~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
....||++|.+.|.-.+. |+ |..||..-+ ..+.+||+-|+.+.|+||.-.
T Consensus 170 ~~~~LT~RE~E~L~W~A~--GK--T~~EIA~IL-----gISe~TV~fHl~na~~KL~a~ 219 (234)
T PRK13870 170 DAAWLDPKEATYLRWIAV--GM--TMEEIADVE-----GVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_pred CCCCCCHHHHHHHHHHHC--CC--CHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
T ss_conf 766799799999999978--99--899999997-----988999999999999995899
No 101
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.09 E-value=0.035 Score=33.54 Aligned_cols=87 Identities=25% Similarity=0.204 Sum_probs=59.9
Q ss_pred HHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEECCCCCC-CCCC-CCCCCCCCCC-CCCCEECCCCCCCHHC
Q ss_conf 999999999889899999---99899999998579947883114987-4334-3111222232-2331001333210000
Q gi|254780893|r 13 AHSIELMLKSENFNVYVT---DLGEDGIELCKFYEFDAIILDLGLTD-IPGF-EVLRALRVAK-ISTPVCILSGMSSIED 86 (236)
Q Consensus 13 ~~~l~~~L~~~g~~v~~a---~~~~eal~~~~~~~~DlvIlD~~lp~-~~G~-~~~~~ir~~~-~~~pII~ls~~~~~~~ 86 (236)
...+...|+..||+|+.. ...++.++.+.+..||++-+-..|+. +..+ ++...+|+.. +.+||++-.+.- ..+
T Consensus 16 ~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG~~~-~~~ 94 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIV-TRD 94 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC-CHH
T ss_conf 9999999997899899899999999999999970999999962202426899999999997699998599989989-743
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 01123221011122
Q gi|254780893|r 87 KVRGLQSGADDYIS 100 (236)
Q Consensus 87 ~~~al~~GAddyi~ 100 (236)
...+-+.|||.|..
T Consensus 95 ~~~~~~~Gad~~~~ 108 (119)
T cd02067 95 FKFLKEIGVDAYFG 108 (119)
T ss_pred HHHHHHCCCCEEEC
T ss_conf 99999869979977
No 102
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.06 E-value=0.043 Score=33.02 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=56.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999889899999998999999985799478831149--874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~l 78 (236)
|+||+||....+--.|..++++.|.+|....|..-.+..+....||.+|+.-+. |.-.|. ....|++....+||+-+
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~-~~~~i~~~~~~~PiLGV 80 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGI-SLELIRRFAGRIPILGV 80 (191)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCH-HHHHHHHHCCCCCEEEE
T ss_conf 56999977442499999999973993499988965877886049998998489979377361-89999986089988998
Q ss_pred C
Q ss_conf 3
Q gi|254780893|r 79 S 79 (236)
Q Consensus 79 s 79 (236)
.
T Consensus 81 C 81 (191)
T COG0512 81 C 81 (191)
T ss_pred C
T ss_conf 7
No 103
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=94.75 E-value=0.1 Score=30.67 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=50.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCC-CCCCCE
Q ss_conf 959998699899999999999889899999998--999999985799478831149--874334311122223-223310
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLG--EDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVA-KISTPV 75 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~--~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~-~~~~pI 75 (236)
||||+||....+...|...|+..|..|....+. ...........||.+|+--+. |...|. ....++.. ...+||
T Consensus 1 MrILiIDn~DSFT~ni~~~lr~lg~~v~V~~~d~~~~~~~~~~~~~~dgIILSpGPg~P~~~~~-~~~~i~~~~~~~iPI 79 (221)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDVRLADEAAVAAGFDGVLLSPGPGTPERAGA-SIDMVRACAAAGTPL 79 (221)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHHCCCCCE
T ss_conf 9799993889339999999987799189998998998899876348998999699998011672-488998753259988
Q ss_pred ECCC
Q ss_conf 0133
Q gi|254780893|r 76 CILS 79 (236)
Q Consensus 76 I~ls 79 (236)
+-+.
T Consensus 80 LGIC 83 (221)
T PRK07765 80 LGVC 83 (221)
T ss_pred EEEE
T ss_conf 9870
No 104
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=94.60 E-value=0.084 Score=31.25 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=56.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCEEEECCC--CCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 959998699899999999999889899999998---99999998579947883114--9874334311122223223310
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLG---EDGIELCKFYEFDAIILDLG--LTDIPGFEVLRALRVAKISTPV 75 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~---~eal~~~~~~~~DlvIlD~~--lp~~~G~~~~~~ir~~~~~~pI 75 (236)
+|||+||....+.-.|..+|+..|.+|....|. ...++.+....||.+|+--+ .|...|. ....++.....+||
T Consensus 2 ~~ILlIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~~~~~e~~~~~~p~~IVlSPGPG~P~dag~-~~~ii~~~~~~iPI 80 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGC-MPELLTRLRGKLPI 80 (531)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCHHCCC-HHHHHHHHCCCCCE
T ss_conf 70999828886288999999866995699969983130199997249596998999989023657-39999986599998
Q ss_pred ECCC
Q ss_conf 0133
Q gi|254780893|r 76 CILS 79 (236)
Q Consensus 76 I~ls 79 (236)
+-+.
T Consensus 81 LGIC 84 (531)
T PRK09522 81 IGIC 84 (531)
T ss_pred EEEC
T ss_conf 9987
No 105
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.52 E-value=0.092 Score=31.01 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCC-CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC--CEEEECCCCCC
Q ss_conf 6889998718997-3789999998718877777530366789998851106788843888878--20264568875
Q gi|254780893|r 155 YQMIELLSLRKNT-TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG--RGYVLRENAKD 227 (236)
Q Consensus 155 ~~lL~~L~~~~g~-vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG--~GY~l~~~~~~ 227 (236)
+..|.+|+.+++. ++|-.+|.+.. ..+..-++-.+..||+. .+++++|| -||+|..++.+
T Consensus 11 l~~L~~LA~~~~~~~~s~~~IA~~~-----~is~~~L~kil~~L~ka--------GlV~S~rG~~GGy~Lar~~~~ 73 (150)
T COG1959 11 LRALLYLALLPGGGPVSSAEIAERQ-----GISPSYLEKILSKLRKA--------GLVKSVRGKGGGYRLARPPEE 73 (150)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHC--------CCEEEECCCCCCEECCCCHHH
T ss_conf 9999999848898846499999998-----91999999999999877--------987852079989202389797
No 106
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=94.47 E-value=0.14 Score=29.87 Aligned_cols=60 Identities=25% Similarity=0.301 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCC
Q ss_conf 116889998718997378999999871887777753036678999885110678884388887820264568
Q gi|254780893|r 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 (236)
Q Consensus 153 ~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~ 224 (236)
....++.+|....+..+|=++|.+.+ ..+.-+|--||.+||.. +.-|.++++.||+|...
T Consensus 4 ~~~~~~~ll~~~~~~~~SGe~La~~L-----giSRtaVwK~Iq~Lr~~-------G~~I~s~~~kGY~L~~~ 63 (79)
T COG1654 4 TSQMLLLLLLLLTGNFVSGEKLAEEL-----GISRTAVWKHIQQLREE-------GVDIESVRGKGYLLPQL 63 (79)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHH-------CCCEEECCCCCEECCCC
T ss_conf 38999999997379966689999997-----86599999999999980-------97168607886365675
No 107
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator); InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulphovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis strain PCC 6803 hypothetical protein slr0846. These are small proteins of 12 to 18 kD which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators..
Probab=94.41 E-value=0.097 Score=30.88 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCC-CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC--EEEECCCCC
Q ss_conf 6889998718997-37899999987188777775303667899988511067888438888782--026456887
Q gi|254780893|r 155 YQMIELLSLRKNT-TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR--GYVLRENAK 226 (236)
Q Consensus 155 ~~lL~~L~~~~g~-vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~--GY~l~~~~~ 226 (236)
...|-.|+.++++ +||=++|.+.- .+..+=+.-.+++|||. .+++|+||. ||+|..++.
T Consensus 11 l~al~~LA~~~~~~~v~~~~ia~~~-----~Is~~yL~K~l~~L~~~--------GlV~S~rG~~GGY~L~~~~~ 72 (133)
T TIGR00738 11 LRALLDLALNADEGPVSVKEIAERQ-----GISRSYLEKVLRTLRKA--------GLVESVRGPGGGYRLARPPE 72 (133)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHC--------CCEECCCCCCCCCCCCCCHH
T ss_conf 9999999722688760789999884-----89987999999988770--------76421158985631077534
No 108
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein; InterPro: IPR010163 Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity..
Probab=94.27 E-value=0.14 Score=29.88 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=84.9
Q ss_pred CCCCEEEECCCCCCCCCCCCC-----CCCCCCCCC--CCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 799478831149874334311-----122223223--3100133321000001123221011122332221111122222
Q gi|254780893|r 43 YEFDAIILDLGLTDIPGFEVL-----RALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 (236)
Q Consensus 43 ~~~DlvIlD~~lp~~~G~~~~-----~~ir~~~~~--~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~l 115 (236)
...+.-+.++++++.+|++.. ..+++...+ --|+.+|+=....- +-+| ..| ++.++- ..
T Consensus 59 ~~~~~~~~~i~l~~~~G~~~~~~~~~~~~~~~~~~~r~~i~~lsGG~r~l~-~~~~-~~a--~~~~~~----------Gv 124 (231)
T TIGR01884 59 KLVEVEVKEIELKDVSGIEEVVRQVSDIIKEVEEPSRRVIVNLSGGMRILV-LILL-LLA--ILVKTR----------GV 124 (231)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHH-HHHH-HHH--HHHHCC----------CE
T ss_conf 567731689985067887899999999985013788789998118758999-9999-988--754236----------61
Q ss_pred CCCCCCCCCCC--C-CCCCCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 22222222222--2-22222222222222333332-----2246411688999871899737899999987188777775
Q gi|254780893|r 116 VRRSRGHAQSL--I-VTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV 187 (236)
Q Consensus 116 lrr~~~~~~~~--~-~~g~~~~d~~~~~v~~~g~~-----i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~ 187 (236)
.|-.+.....+ . .-+++.+|.....+.+.... ..++.+|.++|..|..++|+ .+-+.|++.+ ..+.
T Consensus 125 frGikve~~~V~~~~e~~Gidlni~se~~~~~~~~~~~~~~~~s~~~~~vL~~L~~~~Ge-~~v~~iA~~l-----g~s~ 198 (231)
T TIGR01884 125 FRGIKVEVLRVELESEAEGIDLNIRSELVDFIELELVPLLAGLSREELKVLEALKAEKGE-KSVKNIAKKL-----GKSL 198 (231)
T ss_pred EEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE-ECHHHHHHHH-----CCCH
T ss_conf 310688418999986477244420543002220122244678889999999998507880-5287799885-----7888
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEEE---CCCEEEECC
Q ss_conf 303667899988511067888438888---782026456
Q gi|254780893|r 188 KIIDVFICKLRKKLSNAAGGKNYIETV---WGRGYVLRE 223 (236)
Q Consensus 188 ~tld~~I~rLRkKL~~~~~~~~~I~tv---rG~GY~l~~ 223 (236)
.|+..||..|+++ .+|+.. ||.+|...+
T Consensus 199 ~T~~~~~~~Lek~--------gLv~~~~~~k~~~~~~t~ 229 (231)
T TIGR01884 199 STISRHLAELEKK--------GLVESKGRGKGKRYSVTK 229 (231)
T ss_pred HHHHHHHHHHHHC--------CCEEEEECCCCCCCEECC
T ss_conf 7999999988744--------754563046787200013
No 109
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=94.19 E-value=0.14 Score=29.95 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=67.4
Q ss_pred EEEEECCCH----HHHHHH--HHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----CCCCCCCC
Q ss_conf 599986998----999999--9999988989999--9998999999985799478831149874334-----31112222
Q gi|254780893|r 2 RILLIEDDK----ALAHSI--ELMLKSENFNVYV--TDLGEDGIELCKFYEFDAIILDLGLTDIPGF-----EVLRALRV 68 (236)
Q Consensus 2 kILivedd~----~~~~~l--~~~L~~~g~~v~~--a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~-----~~~~~ir~ 68 (236)
|+=++.|+. +.-+.+ .+.|-++||.|.. ..|..-|..+...+. .+||-+.-|-.+|. ..++.|++
T Consensus 109 KLEVi~D~~tLlPD~~etl~Aae~Lv~eGF~VlpY~~dD~v~akrLe~~Gc--~avMPlgsPIGSg~Gl~n~~~l~~i~e 186 (267)
T CHL00162 109 KLEVIPDPKYLLPDPIGTLKAAEFLVRKGFTVLPYINADPVLAKQLEDIGC--ATVMPLGSPIGSGQGLQNLLNLQIIIE 186 (267)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCC--EEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999827987779887899999999997899998954899899999986598--688634551236887589999999996
Q ss_pred CCCCCCEECCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 32233100133321000001123221011122
Q gi|254780893|r 69 AKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 69 ~~~~~pII~ls~~~~~~~~~~al~~GAddyi~ 100 (236)
.+.+|+|+=.+-+..++...+++.|||..+.
T Consensus 187 -~~~vPvIVDAGiG~pSdAa~aMElG~DaVL~ 217 (267)
T CHL00162 187 -NAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred -CCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf -4899889968989678889999746777870
No 110
>PRK05637 anthranilate synthase component II; Provisional
Probab=94.13 E-value=0.086 Score=31.19 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=54.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999889899999998999999985799478831149--874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~l 78 (236)
+|||+||....+.-.|..++...|..+....+. ..++.+....||.+|+--+. |.-.| .....++.....+||+-+
T Consensus 2 ~~ILlIDnyDSFT~Nl~~~l~~~g~~v~V~rn~-~~~~~~~~~~pd~ivlSPGPg~P~d~g-~~~~~~~~~~~~iPILGI 79 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVETILAANPDLICLSPGPGYPADAG-NMMALIERTLGQIPLLGI 79 (208)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECC-CCHHHHHHCCCCEEEECCCCCCHHHCC-CHHHHHHHHHCCCCEEEH
T ss_conf 779999488975999999998679907999699-999999851999599999999957775-749999997356982211
Q ss_pred C
Q ss_conf 3
Q gi|254780893|r 79 S 79 (236)
Q Consensus 79 s 79 (236)
.
T Consensus 80 C 80 (208)
T PRK05637 80 C 80 (208)
T ss_pred H
T ss_conf 4
No 111
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=93.85 E-value=0.11 Score=30.57 Aligned_cols=89 Identities=20% Similarity=0.221 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEECCCC-CCCC-CCCCCCCCCCCCCCCCEECCCCCCCH
Q ss_conf 899999999999889899999---998999999985799478831149-8743-34311122223223310013332100
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVT---DLGEDGIELCKFYEFDAIILDLGL-TDIP-GFEVLRALRVAKISTPVCILSGMSSI 84 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a---~~~~eal~~~~~~~~DlvIlD~~l-p~~~-G~~~~~~ir~~~~~~pII~ls~~~~~ 84 (236)
+.=...+..+|++.||+|... .+.++..+.+....||+|-+...+ ...+ ..++++.+|+..|.++|++-..+.+.
T Consensus 14 plGl~~la~~l~~~G~~V~~~d~~~~~~~i~~~i~~~~pdiVgiS~~~~~~~~~~~~l~~~ik~~~p~~~iv~GG~~~t~ 93 (121)
T pfam02310 14 PLGLNYVAAALRAAGFEVILLGADVPPEDIVEAIRAENPDVVGLSALMTTNLPAAKELARLLKRIRPGVKVVVGGPHPTA 93 (121)
T ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 48999999999985995001024799999999999809999999523211211368999999985989759983876341
Q ss_pred HCCCCCCC--CCCCCCC
Q ss_conf 00011232--2101112
Q gi|254780893|r 85 EDKVRGLQ--SGADDYI 99 (236)
Q Consensus 85 ~~~~~al~--~GAddyi 99 (236)
. .-+.++ .|+|..+
T Consensus 94 ~-p~~~l~~~~~~D~vv 109 (121)
T pfam02310 94 D-PEEVLRAAPGIDDVV 109 (121)
T ss_pred C-HHHHHHCCCCCCEEE
T ss_conf 8-999984089975899
No 112
>PRK12423 LexA repressor; Provisional
Probab=93.81 E-value=0.17 Score=29.34 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHCCCE
Q ss_conf 89999999999988989
Q gi|254780893|r 10 KALAHSIELMLKSENFN 26 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~ 26 (236)
..+.+.|..+..+.||.
T Consensus 9 ~~iL~fI~~~~~~~G~~ 25 (202)
T PRK12423 9 AAILAFIRERIAQAGQP 25 (202)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999999962989
No 113
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=93.75 E-value=0.16 Score=29.51 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC--EEEECCCC
Q ss_conf 688999871899737899999987188777775303667899988511067888438888782--02645688
Q gi|254780893|r 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR--GYVLRENA 225 (236)
Q Consensus 155 ~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~--GY~l~~~~ 225 (236)
..+|.+|+.+.|++++-.+|.+.. ....+.+.-.+.+|+++ .+++++||. ||+|..+.
T Consensus 11 lr~l~~LA~~~~~~~~~~~Ia~~~-----~is~~~l~kIl~~L~~~--------Glv~S~RG~~GGy~Lar~p 70 (153)
T PRK11920 11 IRMLMYCAANDGKLSRIPEIARAY-----GVSELFLFKILQPLVEA--------GLVETVRGRNGGVRLGKPA 70 (153)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHC--------CCEEECCCCCCCEEECCCH
T ss_conf 999999982899976799999888-----91999999999999988--------9878458898863544898
No 114
>COG2771 CsgD DNA-binding HTH domain-containing proteins [Transcription]
Probab=93.49 E-value=0.13 Score=30.14 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 222464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 147 ~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
...||++|..++.++++ | .|..+|...+ ..+.+|+.+|+.++.+|+.-
T Consensus 2 ~~~Lt~rE~~~~~l~~~--G--~s~~eia~~l-----~is~~tV~~h~~~i~~Kl~~ 49 (65)
T COG2771 2 TADLTPREREILRLVAQ--G--KSNKEIARIL-----GISEETVKTHLRNIYRKLGV 49 (65)
T ss_pred CCCCCHHHHHHHHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 21138889999999986--9--9899999998-----77999999999999999775
No 115
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=93.45 E-value=0.21 Score=28.84 Aligned_cols=96 Identities=25% Similarity=0.297 Sum_probs=67.0
Q ss_pred EEEEECCCH----HHHHHH--HHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----CCCCCCCC
Q ss_conf 599986998----999999--9999988989999--9998999999985799478831149874334-----31112222
Q gi|254780893|r 2 RILLIEDDK----ALAHSI--ELMLKSENFNVYV--TDLGEDGIELCKFYEFDAIILDLGLTDIPGF-----EVLRALRV 68 (236)
Q Consensus 2 kILivedd~----~~~~~l--~~~L~~~g~~v~~--a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~-----~~~~~ir~ 68 (236)
|+=++.|+. +--+.+ .+.|-++||.|.. ..|..-|..+...+. .+||-+.-|-.+|. ..++.|++
T Consensus 94 KLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlpY~~~D~v~akrLed~Gc--~avMPlgsPIGSg~Gl~n~~~l~~i~e 171 (246)
T pfam05690 94 KLEVIGDSKTLLPDPIETLKAAEILVKEGFTVLPYTTDDPVLARRLEEAGC--AAVMPLGAPIGSGLGLRNPENLRIIIE 171 (246)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCC--EEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999826988779887899999999997899898861799899999987598--498622440136888689999999999
Q ss_pred CCCCCCEECCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 32233100133321000001123221011122
Q gi|254780893|r 69 AKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 69 ~~~~~pII~ls~~~~~~~~~~al~~GAddyi~ 100 (236)
+. .+|+|+=.+-+..++...+++.|||..+.
T Consensus 172 ~~-~vPvIVDAGiG~pS~Aa~aMElG~DaVLv 202 (246)
T pfam05690 172 EA-DVPVIVDAGIGTPSDAAQAMELGADAVLL 202 (246)
T ss_pred HC-CCCEEEECCCCCHHHHHHHHHCCCCEEEH
T ss_conf 67-99889848989678899999745677773
No 116
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=93.30 E-value=0.067 Score=31.83 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=72.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--CCCC-CCCCEECC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122--2232-23310013
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL--RVAK-ISTPVCIL 78 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~i--r~~~-~~~pII~l 78 (236)
|.+.||.+..-+......|...+.+|.+-.+..+ .-..+||.+++.+-.+-.+.+.+...- |+.. .+--|+.+
T Consensus 13 ~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----lp~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~vilal 88 (140)
T COG4999 13 RLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----LPPAHYDMMLLGVAVTFRENLTMQHERLAKALSMTDFVILAL 88 (140)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCC----CCHHHHCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEC
T ss_conf 4577668608999999998468826884233100----274452034653666556880388999999986531367736
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 332100000112322101112233222111112
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ar 111 (236)
.++.... .-.....||-+|+.||.+...|+-.
T Consensus 89 Ps~~qv~-AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 89 PSHAQVN-AEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred CCHHHHH-HHHHHHCCHHHHHHCCCHHHHHHHH
T ss_conf 7288875-9999631428674076506566789
No 117
>pfam02082 Rrf2 Transcriptional regulator. This family is related to pfam001022 and other transcription regulation families (personal obs: Yeats C).
Probab=92.87 E-value=0.15 Score=29.70 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=40.0
Q ss_pred HHHHHHHHHC-CCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC--EEEECCCCCC
Q ss_conf 6889998718-99737899999987188777775303667899988511067888438888782--0264568875
Q gi|254780893|r 155 YQMIELLSLR-KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR--GYVLRENAKD 227 (236)
Q Consensus 155 ~~lL~~L~~~-~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~--GY~l~~~~~~ 227 (236)
..+|.+|+.+ .++.+|-++|.+.. ... ..++.++=++|.. ..+|++.||. ||+|..+..+
T Consensus 10 l~~l~~La~~~~~~~~s~~~iA~~~-----~i~----~~~l~kil~~L~~----~gli~s~rG~~GGy~L~k~~~~ 72 (82)
T pfam02082 10 LHALLYLALHPGEGPVTSEEIAERQ-----NIS----PVYLRKILAKLRK----AGLVKSVRGPGGGYRLARPPEE 72 (82)
T ss_pred HHHHHHHHHCCCCCEECHHHHHHHH-----CCC----HHHHHHHHHHHHC----CCCEEECCCCCCCCCCCCCHHH
T ss_conf 9999999818999849599999878-----909----9999999998102----7982565899988113489898
No 118
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.74 E-value=0.15 Score=29.67 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=61.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 59998699899999999999889899999-99899999998579947883114987433431112222322331001333
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a-~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
.++++|.|++.-+. +++.|+++..- .+-.+.++...-.+-.++++-+.-+ .+...+++.+|+.+|+++|+.-+.
T Consensus 442 ~~vvid~d~~~v~~----~~~~g~~v~~GDa~~~~~L~~agi~~A~~vvit~~d~-~~~~~iv~~~r~~~p~~~IiaRa~ 516 (558)
T PRK10669 442 PLVVIETSRTRVDE----LRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG-YEAGEIVASAREKNPDIEIIARAH 516 (558)
T ss_pred CEEEEECCHHHHHH----HHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCH-HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 88999898999999----9968997999789988999857913249999981988-999999999998786986999979
Q ss_pred CCCHHCCCCCCCCCCCCCCC
Q ss_conf 21000001123221011122
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi~ 100 (236)
.. ++..+-.++|||..+.
T Consensus 517 ~~--~~~~~L~~aGA~~VV~ 534 (558)
T PRK10669 517 YD--DEVAYITERGANQVVM 534 (558)
T ss_pred CH--HHHHHHHHCCCCEEEC
T ss_conf 89--9999999779998989
No 119
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=92.74 E-value=0.35 Score=27.51 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=61.6
Q ss_pred HHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----CCCCCCCCCCCCCCEECCCCCCCHHCC
Q ss_conf 99999998898999--99998999999985799478831149874334-----311122223223310013332100000
Q gi|254780893|r 15 SIELMLKSENFNVY--VTDLGEDGIELCKFYEFDAIILDLGLTDIPGF-----EVLRALRVAKISTPVCILSGMSSIEDK 87 (236)
Q Consensus 15 ~l~~~L~~~g~~v~--~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~-----~~~~~ir~~~~~~pII~ls~~~~~~~~ 87 (236)
.-...|-++||.|. +..|+.-|..+...+. .+||-+.-|-.+|. ..++.|++ ...+|+|+=.+-+..++.
T Consensus 189 ~Aae~Lv~eGF~VlpY~~dDpv~akrLed~Gc--~avMPlgsPIGSg~Gi~n~~~i~~i~e-~~~vpvivDAGiG~pS~A 265 (327)
T PRK11840 189 KAAEVLVKEGFQVMVYCSDDPIAAKRLEDAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVE-GAKVPVLVDAGVGTASDA 265 (327)
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHCCC--EEEEECCCCCCCCCCCCCHHHHHHHHH-HCCCCEEEECCCCCHHHH
T ss_conf 99999997898898871698689999987598--388622452347888689999999997-369978995798987899
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 1123221011122
Q gi|254780893|r 88 VRGLQSGADDYIS 100 (236)
Q Consensus 88 ~~al~~GAddyi~ 100 (236)
..+++.|||..+.
T Consensus 266 ~~aMElG~daVL~ 278 (327)
T PRK11840 266 AVAMELGCDGVLM 278 (327)
T ss_pred HHHHHCCCCEEEH
T ss_conf 9998636666663
No 120
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.61 E-value=0.3 Score=27.97 Aligned_cols=96 Identities=25% Similarity=0.281 Sum_probs=67.4
Q ss_pred EEEEECCCH----HHHHHH--HHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----CCCCCCCC
Q ss_conf 599986998----999999--9999988989999--9998999999985799478831149874334-----31112222
Q gi|254780893|r 2 RILLIEDDK----ALAHSI--ELMLKSENFNVYV--TDLGEDGIELCKFYEFDAIILDLGLTDIPGF-----EVLRALRV 68 (236)
Q Consensus 2 kILivedd~----~~~~~l--~~~L~~~g~~v~~--a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~-----~~~~~ir~ 68 (236)
|+=++.|+. +.-+.+ .+.|-++||.|.. ..|..-|..+-..+. .+||-+.-|-.+|. ..++.|++
T Consensus 96 KLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlpY~~~D~v~akrLe~~Gc--~avMPlgsPIGSg~Gl~n~~~l~~i~e 173 (256)
T PRK00208 96 KLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGC--AAVMPLGAPIGSGLGLLNPYNLRIIIE 173 (256)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCC--EEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999817976779886899999999998899897867889899999997495--345204564347988799999999998
Q ss_pred CCCCCCEECCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 32233100133321000001123221011122
Q gi|254780893|r 69 AKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 69 ~~~~~pII~ls~~~~~~~~~~al~~GAddyi~ 100 (236)
+. .+|+|+=.+-+..++...++++|||..+.
T Consensus 174 ~~-~vPvIVDAGiG~pS~Aa~AMElG~DaVL~ 204 (256)
T PRK00208 174 QA-DVPVIVDAGIGTPSDAAQAMELGADAVLL 204 (256)
T ss_pred HC-CCCEEEECCCCCHHHHHHHHHCCCCEEEH
T ss_conf 67-99889857889766789998625543235
No 121
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=92.55 E-value=0.24 Score=28.54 Aligned_cols=91 Identities=23% Similarity=0.243 Sum_probs=59.9
Q ss_pred HHHHH-HHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEECCCCCC-CCCC-CCCCCCCCCCC--CCCEECCCCC
Q ss_conf 89999-9999999889899999---99899999998579947883114987-4334-31112222322--3310013332
Q gi|254780893|r 10 KALAH-SIELMLKSENFNVYVT---DLGEDGIELCKFYEFDAIILDLGLTD-IPGF-EVLRALRVAKI--STPVCILSGM 81 (236)
Q Consensus 10 ~~~~~-~l~~~L~~~g~~v~~a---~~~~eal~~~~~~~~DlvIlD~~lp~-~~G~-~~~~~ir~~~~--~~pII~ls~~ 81 (236)
..+.. .+...|+..||+|... -..++.++.+.+..||+|-+-..|+. +..+ ++++.+|+.+. .+||++-.+.
T Consensus 95 H~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~~~divglS~~~~~~~~~~~~~i~~lr~~~~~~~v~i~vGG~a 174 (201)
T cd02070 95 HDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 38999999999987897799778999979999999972989999962566889999999999997289889859998801
Q ss_pred CCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 1000001123221011122332
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYISKPF 103 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi~KP~ 103 (236)
-+. +. +-..|||.|-.-+.
T Consensus 175 ~~~-~~--a~~~GAD~~a~da~ 193 (201)
T cd02070 175 VNQ-EF--ADEIGADGYAEDAA 193 (201)
T ss_pred CCH-HH--HHHHCCCEECCCHH
T ss_conf 799-99--99929887847999
No 122
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=92.26 E-value=0.23 Score=28.64 Aligned_cols=62 Identities=18% Similarity=0.356 Sum_probs=40.4
Q ss_pred CCHHHH--HHHHHHCCCC-CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC--EEEECCCCC
Q ss_conf 411688--9998718997-37899999987188777775303667899988511067888438888782--026456887
Q gi|254780893|r 152 GKEYQM--IELLSLRKNT-TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR--GYVLRENAK 226 (236)
Q Consensus 152 ~~E~~l--L~~L~~~~g~-vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~--GY~l~~~~~ 226 (236)
+.+|.+ |..|+.+.+. +||-.+|.+.- ....+.+.-.+..|++. .+|+++||. ||+|..++.
T Consensus 6 kt~YAlraL~~LA~~~~~~~vsi~eIAe~~-----~Is~~~LekIl~~L~ka--------GlV~S~RG~~GGY~Lar~p~ 72 (164)
T PRK10857 6 KGRYAVTAMLDVALNSEAGPVPLADISERQ-----GISLSYLEQLFSRLRKN--------GLVSSVRGPGGGYLLGKDAS 72 (164)
T ss_pred HHHHHHHHHHHHHHCCCCCEECHHHHHHHH-----CCCHHHHHHHHHHHHHC--------CCCEECCCCCCCCCCCCCHH
T ss_conf 887999999999818899809499999887-----91999999999999867--------85063268888803369989
No 123
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.10 E-value=0.38 Score=27.31 Aligned_cols=96 Identities=25% Similarity=0.267 Sum_probs=67.3
Q ss_pred EEEEECCCH----HHHHHH--HHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----CCCCCCCC
Q ss_conf 599986998----999999--9999988989999--9998999999985799478831149874334-----31112222
Q gi|254780893|r 2 RILLIEDDK----ALAHSI--ELMLKSENFNVYV--TDLGEDGIELCKFYEFDAIILDLGLTDIPGF-----EVLRALRV 68 (236)
Q Consensus 2 kILivedd~----~~~~~l--~~~L~~~g~~v~~--a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~-----~~~~~ir~ 68 (236)
|+=++.|+. +..+.+ .+.|-++||.|.. ..|..-|..+...+. .+||-+.-|-.+|. ..++.|++
T Consensus 95 KLEVi~D~~~LlPD~~eTl~Aae~Lv~~GF~VlpY~~~D~v~akrLe~~Gc--~avMPlgsPIGSg~Gl~n~~~l~~i~e 172 (248)
T cd04728 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGC--AAVMPLGSPIGSGQGLLNPYNLRIIIE 172 (248)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCC--EEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999817976779886899999999998899897867889999999997495--345204564347988799999999998
Q ss_pred CCCCCCEECCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 32233100133321000001123221011122
Q gi|254780893|r 69 AKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 69 ~~~~~pII~ls~~~~~~~~~~al~~GAddyi~ 100 (236)
+. .+|+|+=.+-+..++...+++.|||..+.
T Consensus 173 ~~-~vPvIVDAGiG~pS~Aa~aMElG~daVL~ 203 (248)
T cd04728 173 RA-DVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred HC-CCCEEEECCCCCHHHHHHHHHCCCCEEEH
T ss_conf 47-99889847999756789998726553345
No 124
>PRK09271 flavodoxin; Provisional
Probab=92.04 E-value=0.31 Score=27.81 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=51.0
Q ss_pred CEEEEE-----CCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEECC------CCCCCCCCCCCCCCC
Q ss_conf 959998-----699899999999999889899999998--9999999857994788311------498743343111222
Q gi|254780893|r 1 MRILLI-----EDDKALAHSIELMLKSENFNVYVTDLG--EDGIELCKFYEFDAIILDL------GLTDIPGFEVLRALR 67 (236)
Q Consensus 1 mkILiv-----edd~~~~~~l~~~L~~~g~~v~~a~~~--~eal~~~~~~~~DlvIlD~------~lp~~~G~~~~~~ir 67 (236)
|||||| .....++..|...|+..|+.|....-. ..+-.......||++|+-. .+|+ +..++...+.
T Consensus 1 MKvlIvYaS~TGNTE~vA~~I~~~l~~~G~eV~~~e~d~~~~~~~~~d~~~yDl~llG~yTwgdG~lPd-E~~DF~e~L~ 79 (160)
T PRK09271 1 MRILLAYASLSGNTREVARMIAARCEEAGHAVTWVETDLQTLAQAPLDPEEYDLFLLGTWTDNAGRTPP-EMKRFIAELV 79 (160)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHCCCCCCCCCEEEEECCCCCCCCCCH-HHHHHHHHHH
T ss_conf 918999984887689999999999997698237987010232203356111888999657048998966-7899999998
Q ss_pred CCCCCCCEECCCCCCCHH
Q ss_conf 232233100133321000
Q gi|254780893|r 68 VAKISTPVCILSGMSSIE 85 (236)
Q Consensus 68 ~~~~~~pII~ls~~~~~~ 85 (236)
...-.-++..+-+.++.+
T Consensus 80 ~~dl~gk~~avFGsGDt~ 97 (160)
T PRK09271 80 ETIGKPPNVAVFGTGETQ 97 (160)
T ss_pred HHCCCCCEEEEECCCCCC
T ss_conf 604568769998777776
No 125
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=91.80 E-value=0.45 Score=26.88 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=62.5
Q ss_pred CCHHHHHHH-HHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEECCCC-CCCCCC-CCCCCCCCCCCCCCEECCCCC
Q ss_conf 998999999-99999889899999---998999999985799478831149-874334-311122223223310013332
Q gi|254780893|r 8 DDKALAHSI-ELMLKSENFNVYVT---DLGEDGIELCKFYEFDAIILDLGL-TDIPGF-EVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 8 dd~~~~~~l-~~~L~~~g~~v~~a---~~~~eal~~~~~~~~DlvIlD~~l-p~~~G~-~~~~~ir~~~~~~pII~ls~~ 81 (236)
|-..+...+ ...|+..||+|+-. -..+.+++.+.++.||++-+..-| +.+... ++++.+++.+..+||++-.+.
T Consensus 99 D~HdiGkniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~~~~divglSallTtTm~~mk~vi~~l~~~g~~vkv~vGGa~ 178 (213)
T cd02069 99 DVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 63412189999999978966885058998999999999749999998323030499999999999974998179971632
Q ss_pred CCHHC---CCCCCCCCCCCCCCCC
Q ss_conf 10000---0112322101112233
Q gi|254780893|r 82 SSIED---KVRGLQSGADDYISKP 102 (236)
Q Consensus 82 ~~~~~---~~~al~~GAddyi~KP 102 (236)
-+.+. .+.+-..|||.|-.-.
T Consensus 179 vt~~fa~~~~~~~y~Gad~y~~dA 202 (213)
T cd02069 179 TSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred CCHHHHHHHHHHCCCCCCEEECCH
T ss_conf 788899876410367980784399
No 126
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=91.79 E-value=0.16 Score=29.52 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCCCEEEEEC---CHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCCCCCCCCCCCCCEECCCCCCCHHCCC
Q ss_conf 9999999998898999999---98999999985799478831149874-3343111222232233100133321000001
Q gi|254780893|r 13 AHSIELMLKSENFNVYVTD---LGEDGIELCKFYEFDAIILDLGLTDI-PGFEVLRALRVAKISTPVCILSGMSSIEDKV 88 (236)
Q Consensus 13 ~~~l~~~L~~~g~~v~~a~---~~~eal~~~~~~~~DlvIlD~~lp~~-~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~ 88 (236)
...+..+|++.||+|.... +.....+.+....||+|-+....+.. ...++++.+|+..|.++|++-..+.+....
T Consensus 5 l~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~~p~~~iv~GG~h~t~~p~- 83 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPE- 83 (127)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH-
T ss_conf 9999999997899579985787620399998649969999997688999999999999997899789985987454999-
Q ss_pred CCCCCCCCCCCC
Q ss_conf 123221011122
Q gi|254780893|r 89 RGLQSGADDYIS 100 (236)
Q Consensus 89 ~al~~GAddyi~ 100 (236)
..++...-||++
T Consensus 84 ~~l~~~~~D~vv 95 (127)
T cd02068 84 EILEEPGVDFVV 95 (127)
T ss_pred HHHHCCCCCEEE
T ss_conf 997075877899
No 127
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=91.72 E-value=0.41 Score=27.10 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHHC-CCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC--EEEECCCCCC
Q ss_conf 889998718-99737899999987188777775303667899988511067888438888782--0264568875
Q gi|254780893|r 156 QMIELLSLR-KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR--GYVLRENAKD 227 (236)
Q Consensus 156 ~lL~~L~~~-~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~--GY~l~~~~~~ 227 (236)
..|.+|+++ .|.++|-.+|.+.. ....+.+.-.+..|+++ .++.++||. ||+|..+..+
T Consensus 12 raL~~LA~~~~~~~~~~~eIae~~-----~Ip~~~L~KIl~~L~~a--------Glv~S~RG~~GGy~Lar~p~~ 73 (141)
T PRK11014 12 RALIYMASLPEGRMTSISEVTEVY-----GVSRNHMVKIINQLSRA--------GYVTAVRGKNGGIRLGKPAST 73 (141)
T ss_pred HHHHHHHHCCCCCEECHHHHHHHH-----CCCHHHHHHHHHHHHHC--------CCEEECCCCCCCEECCCCHHH
T ss_conf 999999839999847499999987-----94999999999999887--------956720479988321489887
No 128
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=91.72 E-value=0.53 Score=26.45 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=54.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 9998699899999999999889899999998999999985799478831149--8743343111222232233100133
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
||+||....+...|..+|+..|..+....+.+-.++.+....||.+|+--+. |...|. ....++.....+||+-+.
T Consensus 2 ILlIDn~DsFT~ni~~~l~~~g~~~~v~~~d~~~~~~i~~~~pd~IiLSpGPg~p~~~~~-~~~~~~~~~~~iPILGIC 79 (195)
T PRK07649 2 ILMIDNYDSFTYNLVQYLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGI-SMEVIRYFAGKIPIFGVC 79 (195)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHCCCCCEEEEC
T ss_conf 999958980799999999978997999889968999998419898998899999578476-146799752899784302
No 129
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=91.61 E-value=0.69 Score=25.75 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=48.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 959998699899999999999889899999-------99899999998579947883114987433431
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVT-------DLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a-------~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~ 62 (236)
|||||....-.+...|...|. .+++|... .+.....+.+.+.+||+||==.-+...|.-|.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~ 68 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAYTAVDKAES 68 (281)
T ss_pred CCEEEECCCCHHHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf 958997698767999999717-78439951576555568589999998619998998732036541338
No 130
>PRK00758 GMP synthase subunit A; Validated
Probab=91.39 E-value=0.59 Score=26.15 Aligned_cols=73 Identities=23% Similarity=0.218 Sum_probs=49.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCCCCCCCCEECCC
Q ss_conf 599986998999999999998898999999989999999857994788311498743343111-222232233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR-ALRVAKISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~-~ir~~~~~~pII~ls 79 (236)
|||+||--..+...|..+|++.|..|....+...+-+ +.. .||.||+--+. +.+-...+. .++ ...+||+-+.
T Consensus 1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~~~-i~~-~~dgiilS~GP-~~~~~~~~~~~i~--~~~iPiLGIC 74 (184)
T PRK00758 1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPLEE-IKA-EPDGIILSGGP-EIERAGNCEEYLL--ELDVPILGIC 74 (184)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHH-HHH-CCCEEEECCCC-CCCCCCCHHHHHH--HCCCCEEEEE
T ss_conf 9999989863899999999978992899959898999-963-89989988999-8333220699998--6599889971
No 131
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=90.92 E-value=0.56 Score=26.30 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=53.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 9998699899999999999889899999998999999985799478831149--8743343111222232233100133
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
||+||....+...|..+|++.|..|....+.+-.++.+....||.+|+--+. |...|. ....++.....+||+-+.
T Consensus 2 ILiIDn~DsFT~ni~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~IvlSpGPg~P~~~~~-~~~~i~~~~~~iPiLGIC 79 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI-SLDVIRHYAGRLPILGVC 79 (187)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHCCCCCEEEEC
T ss_conf 999968981899999999877997999938989999998429897999999999589084-046899753899889987
No 132
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=90.71 E-value=0.22 Score=28.77 Aligned_cols=87 Identities=15% Similarity=0.226 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHCCCEEEE-ECC--HHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHC
Q ss_conf 9999999999988989999-999--89999999857994788311498743-3431112222322331001333210000
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYV-TDL--GEDGIELCKFYEFDAIILDLGLTDIP-GFEVLRALRVAKISTPVCILSGMSSIED 86 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~-a~~--~~eal~~~~~~~~DlvIlD~~lp~~~-G~~~~~~ir~~~~~~pII~ls~~~~~~~ 86 (236)
.....+...|+.. .-++. +.+ .++.+.. ...||+|++....|... ..++++.+++..|.+.|++...|.+..-
T Consensus 35 ~wlay~a~~~~~~-~~iDa~~~~~~~~~~~~~--~~~~d~v~i~t~Tps~~~~~~~a~~~K~~~P~~~ivlgG~H~T~~p 111 (472)
T TIGR03471 35 TWLAQPAAMIPGS-RLVDAPPHGVTIDDTLAI--AKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLP 111 (472)
T ss_pred HHHHHHHHCCCCC-CEEECCCCCCCHHHHHHH--HCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 7899986404678-375277668998999998--5069989999258656889999999997688988999787643689
Q ss_pred CCCCC-CCCCCCCCCC
Q ss_conf 01123-2210111223
Q gi|254780893|r 87 KVRGL-QSGADDYISK 101 (236)
Q Consensus 87 ~~~al-~~GAddyi~K 101 (236)
. +.| +..+.||++.
T Consensus 112 e-e~L~~~~~iD~Vvr 126 (472)
T TIGR03471 112 E-KTLKQGPAIDFVCR 126 (472)
T ss_pred H-HHHHCCCCEEEEEE
T ss_conf 9-99843897269992
No 133
>PRK00215 LexA repressor; Validated
Probab=90.69 E-value=1.2 Score=24.33 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHCCCE
Q ss_conf 9999999999988989
Q gi|254780893|r 11 ALAHSIELMLKSENFN 26 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~ 26 (236)
.+.+.+..+..+.||.
T Consensus 8 ~il~fI~~~~~~~g~~ 23 (204)
T PRK00215 8 EILDFIKDRIEETGYP 23 (204)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999974889
No 134
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=89.86 E-value=0.75 Score=25.55 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=54.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 9998699899999999999889899999998999999985799478831149--87433431112222322331001333
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
|||||....+...+..+|+..|.+|....+.+-.++-+....||.+|+--+. |...|. ....++.....+||+-+.-
T Consensus 2 ILiiDn~DsFT~nl~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~ivLSpGPG~P~~~~~-~~~~i~~~~~~iPILGICl 80 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHVVISPGPCTPNEAGI-SLAVIRHFADKLPILGVCL 80 (191)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHHCC-HHHHHHHHCCCCCEEEEHH
T ss_conf 999969997699999999877995999869988999998539996999999989679073-0689997446997886168
No 135
>PRK05670 anthranilate synthase component II; Provisional
Probab=89.61 E-value=0.71 Score=25.66 Aligned_cols=77 Identities=23% Similarity=0.192 Sum_probs=51.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 59998699899999999999889899999998999999985799478831149--8743343111222232233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
.|||||....+...+...|++.|..|....+-.-..+.+....||.+|+--+. |...| ...+.++.....+||+-+.
T Consensus 1 miLiiD~~dsfT~nI~~~lr~~g~~v~V~~~d~~~~~~i~~~~pdgiiLS~GPg~P~~~~-~~~~~i~~~~~~iPiLGIC 79 (192)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALAPDAIVLSPGPGTPAEAG-ISLELIREFAGKVPILGVC 79 (192)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCC-CHHHHHHHHCCCCCEEEEE
T ss_conf 999996898689999999986899699998998999999850989899999999936605-5499999734699789984
No 136
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=89.48 E-value=1.8 Score=23.28 Aligned_cols=79 Identities=18% Similarity=0.067 Sum_probs=56.1
Q ss_pred EEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 599986998----9999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDDK----ALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~----~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
|+.++.+|. .....+...+++.|.+|.. ..+....+..+....||+|++- ..+.++..+++.+++.+
T Consensus 134 ~vavi~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~~G 211 (333)
T cd06358 134 RWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLST--LVGQDAVAFNRQFAAAG 211 (333)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHHCC
T ss_conf 8999926834658899999999997498599998279999789999999997498999993--77723999999999769
Q ss_pred CCCCEECCCCCC
Q ss_conf 233100133321
Q gi|254780893|r 71 ISTPVCILSGMS 82 (236)
Q Consensus 71 ~~~pII~ls~~~ 82 (236)
...+++..+...
T Consensus 212 ~~~~~~~~~~~~ 223 (333)
T cd06358 212 LRDRILRLSPLM 223 (333)
T ss_pred CCCCEEEEECCC
T ss_conf 998746664567
No 137
>pfam03965 Pencillinase_R Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.
Probab=89.25 E-value=1.7 Score=23.46 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCC
Q ss_conf 4641168899987189973789999998718877777530366789998851106788843888878202645688754
Q gi|254780893|r 150 LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 (236)
Q Consensus 150 LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~~~~e 228 (236)
||..|..++.+|=.+ | .+|-.+|.+.+-.. ......|+.+.++||-+|= ..-....|..|.+.+....+
T Consensus 1 Ls~~E~~IM~~lW~~-~-~~t~~ei~~~l~~~-~~~~~tTv~T~L~rL~~KG-------~l~~~~~gr~~~Y~p~v~~~ 69 (115)
T pfam03965 1 IGDAEWEVMRILWAL-G-PATVKEVVEELPEP-RDWAYSTVKTLLTRLVKKG-------LLSREKDGRAYIYSPLVSRE 69 (115)
T ss_pred CCHHHHHHHHHHHHC-C-CCCHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCC-------CEEEEECCCCEEEEECCCHH
T ss_conf 988999999999807-9-97799999985145-6885728999999999778-------62687339947987468899
No 138
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=88.60 E-value=0.74 Score=25.58 Aligned_cols=76 Identities=22% Similarity=0.287 Sum_probs=50.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 9998699899999999999889899999998999999985799478831149--8743343111222232233100133
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
|||||-...+...+...+++.|..|.....-....+.+....||.+|+--+. |...+.. ...++.....+||+-+.
T Consensus 1 iLiiD~~dsft~~i~r~lr~~g~~~~v~p~~~~~~~~~~~~~~~giiLS~GPg~p~~~~~~-~~~~~~l~~~iPiLGIC 78 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGIS-LEIIRALAGKVPILGVC 78 (184)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCH-HHHHHHHHCCCCEEEEC
T ss_conf 8999379817999999998679959999899999999973297999999999892561460-99999984699899980
No 139
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=88.29 E-value=0.67 Score=25.83 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=58.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 59998699899999999999889899999-99899999998579947883114987433431112222322331001333
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a-~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
.|++||.|+...+. ++..|+.+... .+-.+.|..+.-.+.|.+|.-.+= +...+.++..+|...+..+||....
T Consensus 22 ~v~vId~d~~~~~~----~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~-d~~n~~~~~~~r~~~~~~~iiar~~ 96 (115)
T pfam02254 22 PVVVIDKDPERVEE----LREEGVPVVVGDATDEEVLEEAGIEDADAVVAATGD-DEANILIVLLARELNPAKKIIARAN 96 (115)
T ss_pred CEEEEECCHHHHHH----HHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999998799877----886698699995688667876192028799996298-4999999999999789980999987
Q ss_pred CCCHHCCCCCCCCCCCCCC
Q ss_conf 2100000112322101112
Q gi|254780893|r 81 MSSIEDKVRGLQSGADDYI 99 (236)
Q Consensus 81 ~~~~~~~~~al~~GAddyi 99 (236)
..+....+ -.+|||.-+
T Consensus 97 ~~~~~~~l--~~~Gad~vi 113 (115)
T pfam02254 97 DPEHAELL--RRLGADEVI 113 (115)
T ss_pred CHHHHHHH--HHCCCCEEE
T ss_conf 89999999--976989997
No 140
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=88.16 E-value=2.2 Score=22.72 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=42.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EE---------CCHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 9599986998999999999998898999-99---------99899999998579947883114987433
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVY-VT---------DLGEDGIELCKFYEFDAIILDLGLTDIPG 59 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~-~a---------~~~~eal~~~~~~~~DlvIlD~~lp~~~G 59 (236)
|||||...+-.+...|...|...|..+. .. .+.....+.+...+||+||==.-+-+.|+
T Consensus 1 MkILvtGa~GqLG~~l~~~l~~~~~~~~~~~~~~~~~~Dit~~~~v~~~~~~~~Pd~IIN~aA~T~VD~ 69 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDK 69 (299)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHCCHHH
T ss_conf 979998999978999999866509889985263001367899999999999659999998831016366
No 141
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=87.94 E-value=1 Score=24.66 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 989999999857994788311498743343111222232233100133321000001123221011122
Q gi|254780893|r 32 LGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 32 ~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~ 100 (236)
+..+.++.+.+..++++.+-...| .++++.+++... .++.. -.+.+...++.+.|+|..+.
T Consensus 68 ~~~~~~~~~~~~~v~~v~~~~g~p----~~~v~~l~~~g~--~v~~~--v~s~~~A~~a~~~GaD~iv~ 128 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPP----AEVVERLKAAGI--KVIPT--VTSVEEARKAEAAGADALVA 128 (236)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCC----HHHHHHHHHCCC--EEEEE--CCCHHHHHHHHHCCCCEEEE
T ss_conf 689999999976999999879897----899999998299--89995--89899999999818998999
No 142
>pfam07688 KaiA KaiA domain. The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure.
Probab=87.92 E-value=1.8 Score=23.26 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=59.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 9998699899999999999889899999998999999985--79947883114987433431112222322331001333
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
|-+.=.++.+...+...|...-|.+..+.++.+.++.+.. +.+|++|+..+.... .+...+++++.-.|+|++..
T Consensus 3 I~lll~s~~L~q~~~~~L~~dRY~l~~~~s~~df~~~le~~~e~iDcLvle~~~~~~---~~~~qL~~~G~LlPaVvl~~ 79 (283)
T pfam07688 3 ICLFVESEAIAQRLRRIFQGDRHYLSTFQSLDDFCAYLEDKRERIDCLILYYEANSL---PVLNRLYEQGRLLPAILLEP 79 (283)
T ss_pred EEEEECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCH---HHHHHHHHCCCCCCEEEEEC
T ss_conf 999828889999999865568558885588889999999572568779995077766---99999997585365799715
Q ss_pred C
Q ss_conf 2
Q gi|254780893|r 81 M 81 (236)
Q Consensus 81 ~ 81 (236)
.
T Consensus 80 ~ 80 (283)
T pfam07688 80 S 80 (283)
T ss_pred C
T ss_conf 8
No 143
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.81 E-value=0.92 Score=25.00 Aligned_cols=88 Identities=22% Similarity=0.116 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEECCCCCC-CC-CCCCCCCCCCCCC-CCCEECCCCCCCHH
Q ss_conf 999999999988989999---999899999998579947883114987-43-3431112222322-33100133321000
Q gi|254780893|r 12 LAHSIELMLKSENFNVYV---TDLGEDGIELCKFYEFDAIILDLGLTD-IP-GFEVLRALRVAKI-STPVCILSGMSSIE 85 (236)
Q Consensus 12 ~~~~l~~~L~~~g~~v~~---a~~~~eal~~~~~~~~DlvIlD~~lp~-~~-G~~~~~~ir~~~~-~~pII~ls~~~~~~ 85 (236)
=...+...|+..||+|.. ..++++..+...++.+|++-+..-+.. +. --++...+++.+. .+||+ +.+-=..+
T Consensus 15 G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~di~v~-vGG~Ip~~ 93 (122)
T cd02071 15 GAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVV-GGGIIPPE 93 (122)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEE-EECCCCHH
T ss_conf 79999999997897699679988999999999973998999964655447899999999997699984699-94564989
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 001123221011122
Q gi|254780893|r 86 DKVRGLQSGADDYIS 100 (236)
Q Consensus 86 ~~~~al~~GAddyi~ 100 (236)
+.-.-.++|.+....
T Consensus 94 d~~~l~~~Gv~~vf~ 108 (122)
T cd02071 94 DYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHCCCCEEEC
T ss_conf 999999779988989
No 144
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.65 E-value=0.49 Score=26.67 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=66.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 959998699899999999999889899999-9989999999857994788311498743343111222232233100133
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a-~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
+++.++|.|+..-+. +++.|+.|++- .+-.+.++.....+-.++|+-++=| ....++++..|+.+|++||+.=+
T Consensus 424 i~~vviD~d~~~V~~----~r~~G~~v~yGDat~~~vL~~AGi~~A~~vViai~d~-~~~~~iv~~~r~~~P~l~I~aRa 498 (602)
T PRK03659 424 MRITVLERDISAVNL----MRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEP-EDTMKLVELCQQHFPHLHILARA 498 (602)
T ss_pred CCEEEEECCHHHHHH----HHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCH-HHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 998999786799999----9978990897589999999867904058899982989-99999999999878699699986
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 3210000011232210111223322
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFN 104 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~ 104 (236)
... .+..+-.++|||+.+.--|+
T Consensus 499 r~~--~~~~~L~~~Ga~~vv~Et~e 521 (602)
T PRK03659 499 RGR--VEAHELLQAGVTQFSRETFS 521 (602)
T ss_pred CCH--HHHHHHHHCCCCEEECCHHH
T ss_conf 978--99999997899978662789
No 145
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=87.60 E-value=1.3 Score=24.09 Aligned_cols=82 Identities=23% Similarity=0.229 Sum_probs=60.1
Q ss_pred HHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC-----CCCCCCCCCCCCEECCCCCCCHHCCC
Q ss_conf 99999988989999--999899999998579947883114987433431-----11222232233100133321000001
Q gi|254780893|r 16 IELMLKSENFNVYV--TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV-----LRALRVAKISTPVCILSGMSSIEDKV 88 (236)
Q Consensus 16 l~~~L~~~g~~v~~--a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~-----~~~ir~~~~~~pII~ls~~~~~~~~~ 88 (236)
-...|-.+||.|.. ..|+--|-.+...+. .+||-+.-|-.+|.-+ ++.|+++- .+|+|+=.+-+..++..
T Consensus 122 Aae~Lv~eGF~VlPY~~dD~v~arrLee~Gc--aavMPl~aPIGSg~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa 198 (262)
T COG2022 122 AAEQLVKEGFVVLPYTTDDPVLARRLEEAGC--AAVMPLGAPIGSGLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHHHHCCCEEEECCCCCHHHHHHHHHCCC--EEECCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHH
T ss_conf 9999986798885036887899999986496--68633566566786757889999999738-99889867989766889
Q ss_pred CCCCCCCCCCCC
Q ss_conf 123221011122
Q gi|254780893|r 89 RGLQSGADDYIS 100 (236)
Q Consensus 89 ~al~~GAddyi~ 100 (236)
.+++.|+|..+.
T Consensus 199 ~aMElG~DaVL~ 210 (262)
T COG2022 199 QAMELGADAVLL 210 (262)
T ss_pred HHHHHCCCEEEH
T ss_conf 998605543232
No 146
>CHL00101 trpG anthranilate synthase component 2
Probab=87.03 E-value=1.6 Score=23.49 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=51.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 9998699899999999999889899999998999999985799478831149--8743343111222232233100133
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
||+||--..+...|...|++.|..+....+..-.++.+....||.||+--+. |...+. ....++.....+||+-+.
T Consensus 2 ILiiD~~dsft~~i~r~lrelg~~~~v~~~d~~~~~~i~~~~p~gIILS~GPg~p~~~~~-~~~~~~~~~~~iPILGIC 79 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDLLVCRNDEIDLSKIKNLNPRHIIISPGPGHPRDSGI-SLDVISSYAPTIPILGVC 79 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHHCCCCEEEEC
T ss_conf 999978880899999999868998999869989999997079798999799999578576-168999971499878973
No 147
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=86.68 E-value=2.7 Score=22.20 Aligned_cols=76 Identities=26% Similarity=0.336 Sum_probs=59.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 59998699899999999999889--8999999989999999857994788311498743343111222232233100133
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSEN--FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g--~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
+|++-++|..+.+.+...-+.+| |.|....+....+.-+.. .-.+..+.|=+.+--++...||.....-|++++-
T Consensus 33 ~i~l~~~D~~~~etv~~V~~rwGG~F~~e~~~~~~~~ir~~k~---~G~vVHLTMYG~~i~~~~~~Ir~~~~~~~ilvVV 109 (175)
T PRK03958 33 KILFASEDEHVKESVEDIVERWGGPFKVEVTKSWKKYIREFKD---GGIVVHLTMYGENINDVMDEIREAKTCKPLLIIV 109 (175)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCC---CCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 6787688766899999999861896699976897999863025---8889998368886678776765305788789996
Q ss_pred C
Q ss_conf 3
Q gi|254780893|r 80 G 80 (236)
Q Consensus 80 ~ 80 (236)
+
T Consensus 110 G 110 (175)
T PRK03958 110 G 110 (175)
T ss_pred C
T ss_conf 7
No 148
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=86.65 E-value=1.5 Score=23.68 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=50.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 9998699899999999999889899999998999999985799478831149--87433431112222322331001333
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
||+||....+...+...|++.|..|....+-+--++.+....||.+|+.-+. |...|. ....++.....+||+-+.-
T Consensus 2 iLiiDn~DsfT~ni~~~l~~lg~~v~vv~~d~~~~~~i~~~~p~~IilS~GPg~p~~~~~-~~~~~~~~~~~iPILGICl 80 (192)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAEVKVVRNDEIDIAGIEALNPSHLVISPGPCTPNEAGI-SLQAIEHFAGKLPILGVCL 80 (192)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHCCCCCEEEECH
T ss_conf 999979997799999999877992899969989999998429795999899999678286-1466997357999899879
No 149
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.39 E-value=0.69 Score=25.76 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=66.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 959998699899999999999889899999-9989999999857994788311498743343111222232233100133
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a-~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
++..++|.|+..-+. +++.|+.|++- .+-.+.++.....+-.++|+-++=| .....+++..|+.+|++||+.=+
T Consensus 423 i~~vviD~d~~~V~~----~r~~G~~v~yGDat~~~vL~~AGi~~Ar~vViaidd~-~~~~~iv~~~r~~~P~l~IiaRa 497 (615)
T PRK03562 423 VKMVVLDHDPDHIET----LRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP-QTNLQLTELVKEHFPHLQIIARA 497 (615)
T ss_pred CCEEEEECCHHHHHH----HHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCH-HHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 987999799999999----9967990897689999999867914068899994989-99999999999758998699983
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 3210000011232210111223322
Q gi|254780893|r 80 GMSSIEDKVRGLQSGADDYISKPFN 104 (236)
Q Consensus 80 ~~~~~~~~~~al~~GAddyi~KP~~ 104 (236)
... .+..+-.++|||..+.--|+
T Consensus 498 rd~--~~~~~L~~~Ga~~vv~Et~e 520 (615)
T PRK03562 498 RDV--DHYIRLRQAGVEKPERETFE 520 (615)
T ss_pred CCH--HHHHHHHHCCCCEEECCHHH
T ss_conf 977--88999997899989666589
No 150
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative; InterPro: IPR010088 This entry represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulphate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation..
Probab=85.54 E-value=0.49 Score=26.64 Aligned_cols=94 Identities=22% Similarity=0.208 Sum_probs=57.1
Q ss_pred CEEEEECC-----CHHHHHHHHHHHHHCCCEEEEECCHHH-HHHHH-HHCCCCEEEECCCCC--CCCCC---CCCCCCCC
Q ss_conf 95999869-----989999999999988989999999899-99999-857994788311498--74334---31112222
Q gi|254780893|r 1 MRILLIED-----DKALAHSIELMLKSENFNVYVTDLGED-GIELC-KFYEFDAIILDLGLT--DIPGF---EVLRALRV 68 (236)
Q Consensus 1 mkILived-----d~~~~~~l~~~L~~~g~~v~~a~~~~e-al~~~-~~~~~DlvIlD~~lp--~~~G~---~~~~~ir~ 68 (236)
|||||.=+ -.+++..|+.+|++.|++|++...--. ..+.- .=+.|||++|-..-- +-... +++.+|-.
T Consensus 1 mRillAy~slSGNT~eVA~~I~~~l~~~G~eVDW~~~r~~~La~~pldPe~ydL~~LGtwT~~~GrTP~e~KdFiaEl~~ 80 (145)
T TIGR01754 1 MRILLAYLSLSGNTKEVADIIRDILEKDGHEVDWVEFRISTLADAPLDPEDYDLYLLGTWTVERGRTPDEMKDFIAELAV 80 (145)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 85765354148777899999999998479776766400046424678998631577431223578996668999999999
Q ss_pred --CCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf --32233100133321000001123221011122332
Q gi|254780893|r 69 --AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 (236)
Q Consensus 69 --~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~ 103 (236)
-+|.--+||-|+.. +-|.+||.||-+
T Consensus 81 liGKP~nvaiFGTGeT---------QwGG~d~yCgAV 108 (145)
T TIGR01754 81 LIGKPKNVAIFGTGET---------QWGGDDYYCGAV 108 (145)
T ss_pred HHCCCCCEEEECCCCC---------CCCCCCCCHHHH
T ss_conf 8369982488658875---------528865402478
No 151
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=85.45 E-value=2.9 Score=22.02 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=38.3
Q ss_pred CEEEEECCCH------HHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEECC
Q ss_conf 9599986998------9999999999988989999-99989999999857994788311
Q gi|254780893|r 1 MRILLIEDDK------ALAHSIELMLKSENFNVYV-TDLGEDGIELCKFYEFDAIILDL 52 (236)
Q Consensus 1 mkILivedd~------~~~~~l~~~L~~~g~~v~~-a~~~~eal~~~~~~~~DlvIlD~ 52 (236)
||||.|-+.. .....|...|.+.|++|.. +.+.......+....||++-+..
T Consensus 1 MKIL~v~~~~~~GGae~~~~~L~~~L~~~Gh~v~v~~~~~~~~~~~~~~~~~dvvh~h~ 59 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEIINADIVHLHW 59 (365)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCEEEECC
T ss_conf 95999938999923899999999999977990899992698477766552899899847
No 152
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=85.38 E-value=1.6 Score=23.48 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEECCCCCCCC--CCCCCCCCCCCCC-CCCEECCCCCC---
Q ss_conf 999999999988989999---99989999999857994788311498743--3431112222322-33100133321---
Q gi|254780893|r 12 LAHSIELMLKSENFNVYV---TDLGEDGIELCKFYEFDAIILDLGLTDIP--GFEVLRALRVAKI-STPVCILSGMS--- 82 (236)
Q Consensus 12 ~~~~l~~~L~~~g~~v~~---a~~~~eal~~~~~~~~DlvIlD~~lp~~~--G~~~~~~ir~~~~-~~pII~ls~~~--- 82 (236)
=...+...|+..||+|.. ..++++..+...+...|++.+..-..... .-.+...+++.+- .+||++-..-.
T Consensus 15 G~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad~i~vSsl~g~~~~~~~~l~~~L~e~G~~di~vvvGG~i~i~~ 94 (128)
T cd02072 15 GNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGK 94 (128)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 89999999997897298479889999999999873999999823202562489999999996799999899789867783
Q ss_pred -C-HHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -0-00001123221011122332221111122
Q gi|254780893|r 83 -S-IEDKVRGLQSGADDYISKPFNKEELVARI 112 (236)
Q Consensus 83 -~-~~~~~~al~~GAddyi~KP~~~~eL~ari 112 (236)
+ .+..-+..++|.|......-++.|.++.+
T Consensus 95 ~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~ 126 (128)
T cd02072 95 QDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred CCHHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf 10489999999669685749987999999998
No 153
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.12 E-value=3.2 Score=21.74 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=49.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 95999869989999999999988989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
|||+|+.- -.+...|.+.|..+||+|...+.-.+.++.+. ...|+..+-- +..-.+++++..-..-. -+|.+|.
T Consensus 1 M~IiI~Ga-G~vG~~La~~Ls~e~~dV~vID~d~~~~~~~~-~~lDv~~i~G---d~~~~~~L~~Agi~~ad-~~IAvT~ 74 (455)
T PRK09496 1 MKIIILGA-GQVGGTLAERLVGENNDVTVIDTDEERLRRLQ-DRLDVRTVVG---NGSHPDVLREAGAEDAD-MLIAVTD 74 (455)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HHCCEEEEEE---CCCCHHHHHHCCCCCCC-EEEEECC
T ss_conf 97999998-88999999999868997999989999999988-6258689996---68999999965998699-9999579
Q ss_pred CCC
Q ss_conf 210
Q gi|254780893|r 81 MSS 83 (236)
Q Consensus 81 ~~~ 83 (236)
.++
T Consensus 75 ~De 77 (455)
T PRK09496 75 SDE 77 (455)
T ss_pred CHH
T ss_conf 718
No 154
>CHL00194 ycf39 Ycf39; Provisional
Probab=84.86 E-value=3.3 Score=21.66 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=39.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 95999869989999999999988989999-99989999999857994788311498
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYV-TDLGEDGIELCKFYEFDAIILDLGLT 55 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~-a~~~~eal~~~~~~~~DlvIlD~~lp 55 (236)
|+||++.---.+...+...|-+.||.|.+ +.|+..+- .+.....+++.-|+.-|
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~G~~Vr~lvRnp~ka~-~l~~~Gve~v~gDl~dp 55 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALDEGYQVKCLVRNLRKAA-FLKEWGAELVYGDLSLP 55 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHCCCEEEEECCCCH
T ss_conf 97999899858999999999968890899957867632-34215967999427887
No 155
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=84.23 E-value=3 Score=21.90 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=54.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-----EEEEECCHHHHHHHHHHCCCCEEEE---CCCCC------CCCCC-------
Q ss_conf 599986998999999999998898-----9999999899999998579947883---11498------74334-------
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENF-----NVYVTDLGEDGIELCKFYEFDAIIL---DLGLT------DIPGF------- 60 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~-----~v~~a~~~~eal~~~~~~~~DlvIl---D~~lp------~~~G~------- 60 (236)
|||=+|-|+.....--..-++.|. .|....-++....++....||++|+ |--.. +++.+
T Consensus 107 kVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~i~E~eqP~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dL~~YrnSkyFV 186 (287)
T pfam05582 107 RVLHLDGDPEYLDKCLKVYKQLGLPAVGVHISEKEQPEKIESLLEKYRPDILVITGHDAYLKNKGDYGDLNNYRNSKYFV 186 (287)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 28875498999999999999719845899836012529999999872899899958457633777734666654109999
Q ss_pred CCCCCCCCCCCCC--CEECCCCCCCHHCCCCCCCCCCC
Q ss_conf 3111222232233--10013332100000112322101
Q gi|254780893|r 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGAD 96 (236)
Q Consensus 61 ~~~~~ir~~~~~~--pII~ls~~~~~~~~~~al~~GAd 96 (236)
+.++..|...|+. -|||=.|= ++.-..-+++||+
T Consensus 187 eaVk~AR~y~p~~D~LVIFAGAC--QS~yEall~AGAN 222 (287)
T pfam05582 187 ETVKEARKYEPSLDQLVIFAGAC--QSHYEAIIEAGAN 222 (287)
T ss_pred HHHHHHHHCCCCCCCEEEECCHH--HHHHHHHHHCCCC
T ss_conf 99999982489966389982144--7889999972766
No 156
>pfam01726 LexA_DNA_bind LexA DNA binding domain. This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins. The aligned region contains a variant form of the helix-turn-helix DNA binding motif. This domain is found associated with pfam00717 the auto-proteolytic domain of LexA EC:3.4.21.88.
Probab=83.87 E-value=1.9 Score=23.13 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHH---CCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 246411688999871---8997378999999871887777753036678999885
Q gi|254780893|r 149 HLTGKEYQMIELLSL---RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~---~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkK 200 (236)
.||+++-++|.++.. ..|..=|.+||.+.+ | ..++.++..|+..|.+|
T Consensus 3 ~LT~rQ~~il~~I~~~~~~~G~~Pt~rEI~~~~-g---~~S~s~v~~~l~~Le~k 53 (65)
T pfam01726 3 PLTERQREVLDFIKASIEETGYPPSRREIAQAL-G---LRSPNAAEEHLKALERK 53 (65)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-C---CCCHHHHHHHHHHHHHC
T ss_conf 337999999999999999828898799999993-8---99809999999999998
No 157
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=83.81 E-value=3.7 Score=21.39 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=54.0
Q ss_pred EEECCC---HHHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998699---89999999999988989999-------99989999999857994788311498743343111222232233
Q gi|254780893|r 4 LLIEDD---KALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73 (236)
Q Consensus 4 Livedd---~~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~ 73 (236)
++.+|+ ......+...+++.|.+|.. ..+....+..+....||+|++-.. ..++..+++.+++.+...
T Consensus 142 ~~~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~~--~~~~~~~~~q~~~~G~~~ 219 (344)
T cd06348 142 FYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISAL--AADGGNLVRQLRELGYNG 219 (344)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHHCCCCC
T ss_conf 994897589999999999998769858998716898601789999987519999999457--425999999999769997
Q ss_pred CEECCCCCCC
Q ss_conf 1001333210
Q gi|254780893|r 74 PVCILSGMSS 83 (236)
Q Consensus 74 pII~ls~~~~ 83 (236)
|++.-++..+
T Consensus 220 ~~~~~~~~~~ 229 (344)
T cd06348 220 LIVGGNGFNT 229 (344)
T ss_pred EEEEECCCCC
T ss_conf 0998667787
No 158
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=83.46 E-value=3.8 Score=21.30 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=53.1
Q ss_pred EEEEECCCHHHH---HHHHHHHHHCCCEEEEE--------CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 599986998999---99999999889899999--------9989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDDKALA---HSIELMLKSENFNVYVT--------DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~~~~---~~l~~~L~~~g~~v~~a--------~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
|+|||-|..... +.+...|++.|+.+... .+.+++.+.+....+|+||- +.+.+.++.++.+. ..
T Consensus 31 r~liVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~pt~~~v~~~~~~~~~~~~D~Iia---vGGGS~iD~AKaia-~~ 106 (366)
T PRK09423 31 RALLIADEFVLGIVGDTVEASLKDAGLDVVFEVFNGECSDNEIDRLVAIAEENGCDVIIG---IGGGKTLDTAKAVA-DY 106 (366)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCHHHHHHHHHHH-HH
T ss_conf 589998952899899999999986798699973389999999999999998649998999---37838877799999-98
Q ss_pred CCCCEECCC
Q ss_conf 233100133
Q gi|254780893|r 71 ISTPVCILS 79 (236)
Q Consensus 71 ~~~pII~ls 79 (236)
..+|+|.+.
T Consensus 107 ~~~P~i~IP 115 (366)
T PRK09423 107 LGVPVVIVP 115 (366)
T ss_pred CCCCEEEEC
T ss_conf 289979956
No 159
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=83.00 E-value=4 Score=21.19 Aligned_cols=92 Identities=23% Similarity=0.385 Sum_probs=59.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH------HHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 599986998999999999998898999999989999999------85799478831149874334311122223223310
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC------KFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~------~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pI 75 (236)
|||+.==-..+++-|..+|.+.|..|.+-++.-++++-. ..+.|||+| |+-+ || .+-++|=
T Consensus 449 RvLVTTLTKkMAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLV---------GINL---LR-EGLDlPE 515 (667)
T TIGR00631 449 RVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLV---------GINL---LR-EGLDLPE 515 (667)
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE---------ECCH---HH-CCCCCHH
T ss_conf 489982016778899999705883798714557899999999984478840886---------0002---00-2465114
Q ss_pred ECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0133321000001123221011122332221111122222222
Q gi|254780893|r 76 CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 (236)
Q Consensus 76 I~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr 118 (236)
+=|-|= |+|-=-+|+ -+-+-|+..|=.+.|.
T Consensus 516 VSLVAI---------LDADKEGFL---RSerSLIQTIGRAARN 546 (667)
T TIGR00631 516 VSLVAI---------LDADKEGFL---RSERSLIQTIGRAARN 546 (667)
T ss_pred HHHHHH---------HCCCCCCCC---CCCCHHHHHHHHHHHC
T ss_conf 889976---------327888998---6630278898887525
No 160
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.86 E-value=2 Score=22.93 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC----CCCCCCC-CCCEECCC----
Q ss_conf 999999999988989999---99989999999857994788311498743343111----2222322-33100133----
Q gi|254780893|r 12 LAHSIELMLKSENFNVYV---TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR----ALRVAKI-STPVCILS---- 79 (236)
Q Consensus 12 ~~~~l~~~L~~~g~~v~~---a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~----~ir~~~~-~~pII~ls---- 79 (236)
=...+...|+..||+|.. ..++++..+...++..|+|.+..-. + .+..+++ .+++.+. .+|+++-.
T Consensus 19 G~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~ad~igiSsl~-G-~~~~~~~~l~~~l~~~g~~di~vvvGG~i~i 96 (137)
T PRK02261 19 GNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLY-G-HGEIDCRGLREKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCC-C-CCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 8999999999789749846887999999999987399999971111-2-6612799999999967999996998362167
Q ss_pred -CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -3210000011232210111223322211111222222
Q gi|254780893|r 80 -GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 (236)
Q Consensus 80 -~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~ll 116 (236)
..+-.++.-...++|.|.....--++.+.+.-++..+
T Consensus 97 ~~~dp~~~~~~L~~~Gv~~VF~pGT~~~~ii~~i~~~l 134 (137)
T PRK02261 97 GKHDFEEVEKKFKEMGFDRVFAPGTDLEEVIDDLKADL 134 (137)
T ss_pred CCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 88783999999997797988797889999999999986
No 161
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=82.81 E-value=4 Score=21.14 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=55.1
Q ss_pred EEEEECCC----HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 59998699----899999999999889899999-------9989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDD----KALAHSIELMLKSENFNVYVT-------DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd----~~~~~~l~~~L~~~g~~v~~a-------~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
||-++-+| ...+..+...+++.|.++... .+....+..+....||+|++- ..+.++..+++.+|+.+
T Consensus 140 kvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~~pD~V~~~--~~~~~~~~~~~q~~~~G 217 (347)
T cd06335 140 KVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIV--GNGPEGAQIANGMAKLG 217 (347)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHCC
T ss_conf 6999970763668999999999986598675788407998348999999986699999994--77617999999999719
Q ss_pred CCCCEECCCCCC
Q ss_conf 233100133321
Q gi|254780893|r 71 ISTPVCILSGMS 82 (236)
Q Consensus 71 ~~~pII~ls~~~ 82 (236)
...|++.-.+..
T Consensus 218 ~~~~~~g~~~~~ 229 (347)
T cd06335 218 WKVPIISHWGLS 229 (347)
T ss_pred CCCCEEEECCCC
T ss_conf 997679414777
No 162
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=82.40 E-value=1.3 Score=24.02 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEECCCCCCCCCC----CCCCCCCCCCCCCCEE-CC
Q ss_conf 69989999999999988989999---9998999999985799478831149874334----3111222232233100-13
Q gi|254780893|r 7 EDDKALAHSIELMLKSENFNVYV---TDLGEDGIELCKFYEFDAIILDLGLTDIPGF----EVLRALRVAKISTPVC-IL 78 (236)
Q Consensus 7 edd~~~~~~l~~~L~~~g~~v~~---a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~----~~~~~ir~~~~~~pII-~l 78 (236)
|-+..=+..+...|...||+|+. ..++.|+....-++..|+|.+-.- ..... .+...+|+.... .|+ ++
T Consensus 23 DgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl--~g~h~~l~~~lve~lre~G~~-~i~v~~ 99 (143)
T COG2185 23 DGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSL--DGGHLTLVPGLVEALREAGVE-DILVVV 99 (143)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHCCC-CEEEEE
T ss_conf 54431319999999857937981587589999999998647988999734--404789999999999981975-548865
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33210000011232210111223322211111222
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~ 113 (236)
.+.-..++..+.-++|.|.++.--.+..+.+..+.
T Consensus 100 GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~ 134 (143)
T COG2185 100 GGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLL 134 (143)
T ss_pred CCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHH
T ss_conf 68668136799998186654689998999999999
No 163
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=82.35 E-value=1.2 Score=24.36 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCEECCCCCCCHH
Q ss_conf 89999999999988989--9999998999999985799478831149874334311122223--2233100133321000
Q gi|254780893|r 10 KALAHSIELMLKSENFN--VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA--KISTPVCILSGMSSIE 85 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~--v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~--~~~~pII~ls~~~~~~ 85 (236)
..+-+.++..|....-- +......-...+.+...-||.+++|......|--++...++.. ....|++=+.. ++..
T Consensus 4 ~~~pN~lk~~L~~g~~~~G~~~~~~sp~~~Ei~a~~G~Dfv~iD~EHg~~~~~~l~~~i~a~~~~~~~~lVRvp~-~~~~ 82 (256)
T PRK10558 4 DVFPNKFKAALAAKQVQIGCWSALSNPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT-NEPV 82 (256)
T ss_pred CCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCC-CCHH
T ss_conf 657809999997799779988578998999999728989999837789999999999999997179974896788-9889
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 001123221011122332221
Q gi|254780893|r 86 DKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 86 ~~~~al~~GAddyi~KP~~~~ 106 (236)
.+.++|++||+..+.-=++-.
T Consensus 83 ~i~r~LD~Ga~GvivP~V~s~ 103 (256)
T PRK10558 83 IIKRLLDIGFYNFLIPFVETA 103 (256)
T ss_pred HHHHHHCCCCCEEEECCCCCH
T ss_conf 999997079875561476999
No 164
>PRK06930 positive control sigma-like factor; Validated
Probab=82.26 E-value=2.3 Score=22.65 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 224641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 148 i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
-.||++|-.++.+ +.++=+|+.+|++.+ ..+..||..|++|-++||...
T Consensus 113 s~Lt~rErevfll---~~~~glsy~EIA~~L-----~Is~~tV~~~l~RA~~Ki~~~ 161 (170)
T PRK06930 113 SVLTEREKEVYLM---HRGYGLSYSEIAAYL-----NIKKSTVQSMIERAEKKIAKQ 161 (170)
T ss_pred HHCCHHHHHHHHH---HHHHCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 8569888899988---976188899999997-----988999999999999999998
No 165
>PRK11564 stationary phase inducible protein CsiE; Provisional
Probab=82.00 E-value=4.3 Score=20.96 Aligned_cols=10 Identities=0% Similarity=-0.246 Sum_probs=3.5
Q ss_pred EECCCHHHHH
Q ss_conf 9869989999
Q gi|254780893|r 5 LIEDDKALAH 14 (236)
Q Consensus 5 ivedd~~~~~ 14 (236)
|..++...|.
T Consensus 76 I~G~E~~kR~ 85 (426)
T PRK11564 76 IEGTALDQRL 85 (426)
T ss_pred EECCHHHHHH
T ss_conf 9736899999
No 166
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=81.61 E-value=3.5 Score=21.52 Aligned_cols=76 Identities=11% Similarity=0.189 Sum_probs=46.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999889899999998999999985799478831149--874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~~G~~~~~~ir~~~~~~pII~l 78 (236)
+||||||--..+...|...+++.|..+......+- .......||.+|+.-+. |... -.+...++......||+-+
T Consensus 3 ~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~~~~~--~~~~~~~~~~IIlSpGPg~p~~~-~~~~~~i~~~~~~~PILGI 79 (191)
T PRK06895 3 TNLLIINNHDSFTFNLVDLIRKLGVPMKVVNVEDL--DLDEVENFSHILISPGPDVPRAY-PQLFAMLERYYQQKSILGV 79 (191)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC--CHHHHHCCCEEEEECCCCCCCCC-CHHHHHHHHHCCCCCEEEE
T ss_conf 86999969884899999999877996999847848--99898558969990899980105-2249999986068987898
Q ss_pred C
Q ss_conf 3
Q gi|254780893|r 79 S 79 (236)
Q Consensus 79 s 79 (236)
.
T Consensus 80 C 80 (191)
T PRK06895 80 C 80 (191)
T ss_pred C
T ss_conf 2
No 167
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=79.87 E-value=3.6 Score=21.42 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=52.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHH--HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 599986998999999999998898999999989-9999998--5799478831149874334311122223223310013
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGE-DGIELCK--FYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~-eal~~~~--~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
.||+|--....-..+...+++.|++.....++. +-...+. -...|+||+=.+.-+.+....++..- ....+|+++.
T Consensus 1 svLiIGG~~~~~~~~~~~~~~~G~~~~~h~~g~~~~~~~l~~~i~~aDlVI~~td~vsH~~~~~vK~~a-kk~~~p~v~~ 79 (96)
T pfam10087 1 SVLIVGGRDDRLGHYRKLLEKYGGEFIVHDGGREKKKKKIPALLKKADLVIVFTDCVSHDAMWRVKEEA-KKRGIPVVFS 79 (96)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH-HHHCCCEEEE
T ss_conf 999995855678999999998399899965898733556775058988899971766879999999999-9849978997
Q ss_pred CCCC
Q ss_conf 3321
Q gi|254780893|r 79 SGMS 82 (236)
Q Consensus 79 s~~~ 82 (236)
.+.+
T Consensus 80 ~s~s 83 (96)
T pfam10087 80 RSRS 83 (96)
T ss_pred CCCC
T ss_conf 6874
No 168
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.83 E-value=4.2 Score=21.06 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 99999999999889899999998------9999999857994788311498743343111222232233100133321
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
.+...+...+++.||++..+.+. .+.+..+....+|.+|+-. ++.+ -...+.++ ...+|++++....
T Consensus 16 ~l~~gi~~~~~~~gy~~ll~~~~~~~~~e~~~i~~l~~~~vdgiIi~~--~~~~-~~~~~~l~--~~~iPvV~id~~~ 88 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVT--PELT-SAQRAALR--RTGIPFVVVDPAG 88 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCC-HHHHHHHH--HCCCCEEEECCCC
T ss_conf 999999999998499899997999969999999999954999999906--8899-99999999--7499999987888
No 169
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=79.74 E-value=4.6 Score=20.79 Aligned_cols=11 Identities=27% Similarity=0.304 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 67899988511
Q gi|254780893|r 192 VFICKLRKKLS 202 (236)
Q Consensus 192 ~~I~rLRkKL~ 202 (236)
-..+.+.+||.
T Consensus 236 ~ml~~~~~~l~ 246 (260)
T COG1497 236 RMLRYLLRKLE 246 (260)
T ss_pred HHHHHHHHHHH
T ss_conf 77999998887
No 170
>PRK13138 consensus
Probab=79.53 E-value=2.3 Score=22.60 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=44.8
Q ss_pred HHHHHHHHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCCH------HC
Q ss_conf 9999998579947883114987--433--------------------4311122223223310013332100------00
Q gi|254780893|r 35 DGIELCKFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSSI------ED 86 (236)
Q Consensus 35 eal~~~~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~~------~~ 86 (236)
+.+..+...-.|++=+.+..++ .|| +++++++|..++.+|++++|.++.. ..
T Consensus 31 ~~~~~l~~~GadiiEiGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlM~Y~N~i~~~G~e~F 110 (264)
T PRK13138 31 IWADALIRGGAGILELGIPFSDPVADGPVIQKAFKRALAHPFSMDKILEITAEIHKLHPEIPLVYLTYFNPLFSMGLEAF 110 (264)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCHHHH
T ss_conf 99999997799989979988886665899999999999779908897446776033589888897521238988489999
Q ss_pred CCCCCCCCCCCCCC--CCCCC
Q ss_conf 01123221011122--33222
Q gi|254780893|r 87 KVRGLQSGADDYIS--KPFNK 105 (236)
Q Consensus 87 ~~~al~~GAddyi~--KP~~~ 105 (236)
.-+|-++|+|+.|. -|+++
T Consensus 111 ~~~~~~~GvdGlIipDLP~e~ 131 (264)
T PRK13138 111 TERAKNSGIQGLIIPDLPFDT 131 (264)
T ss_pred HHHHHHCCCCEEECCCCCCCC
T ss_conf 999987697758536898650
No 171
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=79.22 E-value=1.6 Score=23.61 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=39.8
Q ss_pred HCCCEEEEE-CCH-----HHHHHHHHHCCCCEEEECCCCCCC-CC-------CCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 889899999-998-----999999985799478831149874-33-------43111222232233100133321
Q gi|254780893|r 22 SENFNVYVT-DLG-----EDGIELCKFYEFDAIILDLGLTDI-PG-------FEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 22 ~~g~~v~~a-~~~-----~eal~~~~~~~~DlvIlD~~lp~~-~G-------~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
..|++|.-+ -+| .+.-+.+....+|++++|+..-.. +. ..+++.+|+.+|.+||++++...
T Consensus 29 ~lg~~viNlG~sG~g~le~~~a~~i~~~~a~~~vi~~g~N~~~~~~~~~~~~~~~V~~ir~~~p~tPIvlv~~~~ 103 (177)
T cd01844 29 RLGLEVINLGFSGNARLEPEVAELLRDVPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPRY 103 (177)
T ss_pred HCCCCEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 549977714667543102889999861899889996346788747899999999999999878899789983367
No 172
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.17 E-value=5.4 Score=20.38 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=31.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC
Q ss_conf 9599986998999999999998898999999989999999857
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY 43 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~ 43 (236)
|||+|+-- -.+...+...|.+.|++|.....+.+..+.+..+
T Consensus 1 MkI~IiGa-GaiG~~~a~~L~~ag~~V~li~r~~~~~~~i~~~ 42 (307)
T PRK06522 1 MKIAILGA-GAIGGLFGARLAQAGHDVTLVARGATLAEALNEN 42 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC
T ss_conf 98999991-4999999999984899889997888899999968
No 173
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=79.03 E-value=5.4 Score=20.35 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=46.0
Q ss_pred EEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 599986998----9999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDDK----ALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~----~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
+|.++.+|. .+...+...++..|.++.. ..+....+..+....||+|++-.. ..++..+++.+++.+
T Consensus 137 ~vai~~~~~~~g~~~~~~~~~~l~~~g~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~--~~~~~~~~~~~~~~g 214 (334)
T cd06342 137 KVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGY--YPEAGPLVRQMRQLG 214 (334)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHHHCC
T ss_conf 899991565544557999999999749839999965887666578999998659999999267--558999999999769
Q ss_pred CCCCEECCCC
Q ss_conf 2331001333
Q gi|254780893|r 71 ISTPVCILSG 80 (236)
Q Consensus 71 ~~~pII~ls~ 80 (236)
...|++..++
T Consensus 215 ~~~~~~~~~~ 224 (334)
T cd06342 215 LKAPFMGGDG 224 (334)
T ss_pred CCCEEEEECC
T ss_conf 9975999677
No 174
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=78.79 E-value=4.9 Score=20.62 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=35.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC
Q ss_conf 9599986998999999999998898999999989999999857994788311
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDL 52 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~ 52 (236)
||||+..----+...+...|.+.|++|............+.....+++.-|+
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~gDl 52 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERGEEVRVLVRPTSDRRNLEGLDVEIVEGDL 52 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEEEC
T ss_conf 9499986777999999999997849899998999865565217977998207
No 175
>KOG1562 consensus
Probab=78.29 E-value=5.7 Score=20.22 Aligned_cols=61 Identities=28% Similarity=0.195 Sum_probs=49.3
Q ss_pred EEEEECCCHHHHHHHHHHHH--HCCC---EEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 59998699899999999999--8898---999-9999899999998579947883114987433431
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLK--SENF---NVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~--~~g~---~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~ 62 (236)
.|+++|-|..+.+.=..++. ..|| +|. ...+|-..++...++++|++|+|..=|.+.+-.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~l 213 (337)
T KOG1562 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACAL 213 (337)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
T ss_conf 0675433678999999873887536789714899556899998703697418997167767558898
No 176
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=78.27 E-value=5.7 Score=20.22 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=58.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEE-----EECCHHHHHHHHHHCCCCEEEE---CCCCC------CCCC-------C
Q ss_conf 599986998999999999998898999-----9999899999998579947883---11498------7433-------4
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVY-----VTDLGEDGIELCKFYEFDAIIL---DLGLT------DIPG-------F 60 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~-----~a~~~~eal~~~~~~~~DlvIl---D~~lp------~~~G-------~ 60 (236)
|||=+|-|+.....-...=++-|..|. .-.-++....++..-+||++|+ |.-.. +++. .
T Consensus 115 rVLH~DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~~~~PDIlViTGHDa~~K~~~~~~DL~aYRhSkyFv 194 (292)
T TIGR02855 115 RVLHIDGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYGDLNAYRHSKYFV 194 (292)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCEEECCCCHHHHHHCCCCHHHH
T ss_conf 47742288889999999886619727999984121808899999730997899946663021678711364236656899
Q ss_pred CCCCCCCCCCCCCC--EECCCC-CCCHHCCCCCCCCCCC
Q ss_conf 31112222322331--001333-2100000112322101
Q gi|254780893|r 61 EVLRALRVAKISTP--VCILSG-MSSIEDKVRGLQSGAD 96 (236)
Q Consensus 61 ~~~~~ir~~~~~~p--II~ls~-~~~~~~~~~al~~GAd 96 (236)
+.++.+|...|..= |||=.| .+--|.. ++|||+
T Consensus 195 ~~V~~aR~~~P~lD~LVIFAGACQShfE~l---i~AGAN 230 (292)
T TIGR02855 195 ETVREARKYVPSLDQLVIFAGACQSHFESL---IRAGAN 230 (292)
T ss_pred HHHHHHHHHCCCCCCHHHHHCCCHHHHHHH---HHHCCC
T ss_conf 999998631787532343321214457999---974565
No 177
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=78.04 E-value=3.7 Score=21.36 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 22464116889998718997378999999871887777753036678999885
Q gi|254780893|r 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200 (236)
Q Consensus 148 i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkK 200 (236)
.++++.|..++..+=++. ..|-++|.+.+-... .-...||.+.|+||-||
T Consensus 2 ~~Is~aE~eVM~ilW~~~--~~t~~eI~~~l~~~~-ews~sTV~TLl~RL~KK 51 (123)
T COG3682 2 MSISAAEWEVMEILWSRG--PATVREIIEELPADR-EWSYSTVKTLLNRLVKK 51 (123)
T ss_pred CCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHC
T ss_conf 856589999999999728--866999999986323-60087899999999864
No 178
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=77.48 E-value=2.2 Score=22.68 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=56.2
Q ss_pred HHHHHHHHCCC--EEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCEECCCCCCCHHCCCCC
Q ss_conf 99999998898--99999998999999985799478831149874334311122223--223310013332100000112
Q gi|254780893|r 15 SIELMLKSENF--NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA--KISTPVCILSGMSSIEDKVRG 90 (236)
Q Consensus 15 ~l~~~L~~~g~--~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~--~~~~pII~ls~~~~~~~~~~a 90 (236)
.++..|..... -+......-...+.+...-||.+++|......|--++...++.. ....|++=+.. .+...+.++
T Consensus 2 ~lk~~L~~g~~~~G~~~~~~sp~~~Ei~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~iVRvp~-~~~~~i~~~ 80 (249)
T TIGR03239 2 RFRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW-NEPVIIKRL 80 (249)
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCC-CCHHHHHHH
T ss_conf 6799988799889987468998999999718969999810448999999999999998469984897999-987899999
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 3221011122332221
Q gi|254780893|r 91 LQSGADDYISKPFNKE 106 (236)
Q Consensus 91 l~~GAddyi~KP~~~~ 106 (236)
|++||+..+.-=++-.
T Consensus 81 LD~Ga~GiivP~V~t~ 96 (249)
T TIGR03239 81 LDIGFYNFLIPFVESA 96 (249)
T ss_pred HCCCCCEEEECCCCCH
T ss_conf 7089987895174559
No 179
>pfam08461 HTH_12 Ribonuclease R winged-helix domain. This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaebacteria.
Probab=77.40 E-value=5.1 Score=20.50 Aligned_cols=44 Identities=7% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 889998718997378999999871887777753036678999885
Q gi|254780893|r 156 QMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200 (236)
Q Consensus 156 ~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkK 200 (236)
.||..|+. .+.+++...|.+.+-...+..++|+|+.|.+.|=.+
T Consensus 2 eILriL~~-~~~Pigak~ia~~L~~rG~~i~eRaVRYhL~~Lde~ 45 (66)
T pfam08461 2 EILRILAE-SDKPIGAKIIAEELNLRGYDIGERAVRYHLRILDER 45 (66)
T ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 78999998-599864999999999828584089999999999886
No 180
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=77.34 E-value=6.1 Score=20.05 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=5.2
Q ss_pred EEEECCCEEEECC
Q ss_conf 8888782026456
Q gi|254780893|r 211 IETVWGRGYVLRE 223 (236)
Q Consensus 211 I~tvrG~GY~l~~ 223 (236)
..++.=.||-+.+
T Consensus 225 ~~~isisgyh~~e 237 (715)
T PRK09426 225 FNSISISGYHMQE 237 (715)
T ss_pred CEEEEEECHHHHH
T ss_conf 3278641321653
No 181
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.16 E-value=4.4 Score=20.93 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=28.6
Q ss_pred CEEEEECCCHH----HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 95999869989----9999999999889899999998999999985799478831149874334
Q gi|254780893|r 1 MRILLIEDDKA----LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 (236)
Q Consensus 1 mkILivedd~~----~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~ 60 (236)
||+-||..+.. +++.+++.|.+.||.+ ....+|++|. -+.||-
T Consensus 1 mk~~iv~~~~~~s~~~~~~~~~~l~~~~~~~-------------~~~~~Dlvi~----iGGDGT 47 (265)
T PRK04885 1 MKVAIISNGDEKSKRVASKLKKYLKDFGFIL-------------DEKNPDIVIS----VGGDGT 47 (265)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCC-------------CCCCCCEEEE----ECCCHH
T ss_conf 9699996969899999999999998769855-------------8778999999----887399
No 182
>PRK08295 RNA polymerase factor sigma-70; Validated
Probab=76.78 E-value=4.6 Score=20.80 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++.|..++.+.+ .| .|.++|.+.+ ..+..+|.+.++|.|+||...
T Consensus 155 ~l~~~e~~V~~~~~--eg--~s~~EIA~~l-----~is~~tV~~~l~RarkkLr~~ 201 (209)
T PRK08295 155 LLSDLEKEVLELYL--DG--KSYQEIAEEL-----NRHVKSIDNALQRVKRKLEKY 201 (209)
T ss_pred CCCHHHHHHHHHHH--CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 69189999999998--69--9999999998-----929999999999999999999
No 183
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=76.35 E-value=0.62 Score=26.04 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 9899999998579947883114987-433431112222322331001333210000011232210111
Q gi|254780893|r 32 LGEDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDY 98 (236)
Q Consensus 32 ~~~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddy 98 (236)
+..+-...+-..-.|++++|.--.. ..-+++++.||+..|.+|||.-- -.+.+......++|||..
T Consensus 223 ~~~eRa~~Lv~aGvDvivIDtAhGhs~~vi~~ik~ik~~~p~~~iIaGN-VaT~e~a~~Li~aGAD~v 289 (467)
T pfam00478 223 DDLERAEALVEAGVDVIVIDSAHGHSEYVLEMIKWIKKKYPDLDVIAGN-VVTAEAARELIDAGADAV 289 (467)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE-ECCHHHHHHHHHHCCCEE
T ss_conf 5999999998769988997344544188999999987407877378510-058999999997077757
No 184
>PRK08782 consensus
Probab=75.89 E-value=2.1 Score=22.89 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCC-EEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCC
Q ss_conf 9999999998898-99999998999999985-799478831149874334311122223223310013332100000112
Q gi|254780893|r 13 AHSIELMLKSENF-NVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRG 90 (236)
Q Consensus 13 ~~~l~~~L~~~g~-~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~a 90 (236)
.+...+.|++.|. -|....+.+++...... ..=-+=++.+.|-.-++++.++.+++..+++.|=.-|-. +.++.-.+
T Consensus 7 ~~~~~~~L~~~~iipVir~~~~~~a~~~~eal~~gGi~~iEiTlrt~~a~~~i~~l~~~~p~~~vGaGTV~-~~e~~~~a 85 (219)
T PRK08782 7 QNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPVAIEALAMLKRELPNIVIGAGTVL-SERQLRQS 85 (219)
T ss_pred HCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEC-CHHHHHHH
T ss_conf 25599999878978999759999999999999987998799967993399999999986899479999705-89999999
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 32210111223322211111
Q gi|254780893|r 91 LQSGADDYISKPFNKEELVA 110 (236)
Q Consensus 91 l~~GAddyi~KP~~~~eL~a 110 (236)
.++|| +|+.-|.-..+++.
T Consensus 86 ~~aGA-~FiVSP~~~~~v~~ 104 (219)
T PRK08782 86 VDAGA-DFLVTPGTPAPLAR 104 (219)
T ss_pred HHCCC-CEEECCCCCHHHHH
T ss_conf 98499-89987899799999
No 185
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.50 E-value=2.5 Score=22.43 Aligned_cols=97 Identities=22% Similarity=0.259 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHCCC-EEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCC
Q ss_conf 99999999998898-99999998999999985-79947883114987433431112222322331001333210000011
Q gi|254780893|r 12 LAHSIELMLKSENF-NVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVR 89 (236)
Q Consensus 12 ~~~~l~~~L~~~g~-~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~ 89 (236)
+...+...|+..+. -|....+.+++...... -.--+=++++.|-.-++++.++.+++..+++-|=.-| --+.++.-+
T Consensus 4 ~~~~i~~ll~~~~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~tp~a~~~I~~l~~~~p~~~vGaGT-V~~~e~~~~ 82 (212)
T PRK05718 4 WKTQIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRAIRKEVPEALIGAGT-VLNPEQLAQ 82 (212)
T ss_pred HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-ECCHHHHHH
T ss_conf 4636999997698799997489999999999999879978999578961999999999758981796533-134889999
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 232210111223322211111
Q gi|254780893|r 90 GLQSGADDYISKPFNKEELVA 110 (236)
Q Consensus 90 al~~GAddyi~KP~~~~eL~a 110 (236)
+.++|| +|+.-|.-..+++.
T Consensus 83 a~~aGA-~FiVSP~~~~~v~~ 102 (212)
T PRK05718 83 AIEAGA-QFIVSPGLTPPLLK 102 (212)
T ss_pred HHHCCC-CEEECCCCCHHHHH
T ss_conf 998499-89984899899999
No 186
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family; InterPro: IPR014284 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry is found in all varieties of the sigma-70 type sigma factors, including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (IPR000394 from INTERPRO) are included within this entry. ; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=75.46 E-value=4.7 Score=20.74 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|+++|..++.+-.-. | .|..+|.+.+ ..+..||..+++|.|+||..
T Consensus 114 ~Lp~~~r~~~~l~~~~-~--~s~~eIA~~l-----g~s~~~v~~~~~ra~~~L~~ 160 (162)
T TIGR02937 114 KLPEREREVLVLRYLE-G--LSYKEIAEIL-----GISEGTVKSRLKRARKKLRE 160 (162)
T ss_pred HCCHHHHHHHHHHHHH-C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 4799899999999971-8--9988999986-----89999999999999999985
No 187
>PRK13151 consensus
Probab=75.19 E-value=7 Score=19.70 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=41.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 959998699899999999999889899999998999999985799478831149874334
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~ 60 (236)
|||.|||=..---.++..+|+..|+++....+.++. ..+|.+|+ |+.-.+
T Consensus 1 MkI~IiDyg~GNi~Sv~~al~~lg~~~~i~~~~~~i------~~~d~lIl----PGVGsf 50 (195)
T PRK13151 1 MKIIIIDTACANLASLKFCLDRLGFNATISRDLKEL------ESADKLFL----PGVGTA 50 (195)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEECCHHHH------HHCCEEEE----CCCCCH
T ss_conf 989999479609999999999859987996799999------44896998----888999
No 188
>pfam01047 MarR MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.
Probab=75.06 E-value=5.8 Score=20.17 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 464116889998718997378999999871887777753036678999885
Q gi|254780893|r 150 LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200 (236)
Q Consensus 150 LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkK 200 (236)
||..||.+|.+|.+++| +|-.+|.+.+ ..+..++-..|.+|-+|
T Consensus 1 lT~~Q~~vL~~l~~~~~--~s~~~la~~~-----~~~~~~vs~~i~~Le~~ 44 (59)
T pfam01047 1 LTLTQFHILRILYEHGP--LTVSELAEKL-----GVDRSTVTRVLDRLEKK 44 (59)
T ss_pred CCHHHHHHHHHHHHCCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHC
T ss_conf 98999999999994699--2999999998-----85865499999999889
No 189
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=75.01 E-value=7.1 Score=19.67 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=4.6
Q ss_pred CCCEECCCCC
Q ss_conf 3310013332
Q gi|254780893|r 72 STPVCILSGM 81 (236)
Q Consensus 72 ~~pII~ls~~ 81 (236)
.+|+|..++.
T Consensus 90 ~ip~i~~~~~ 99 (298)
T cd06268 90 GVPLISPGAT 99 (298)
T ss_pred CCEEEECCCC
T ss_conf 9218805754
No 190
>COG1693 Repressor of nif and glnA expression [Transcription]
Probab=75.00 E-value=3.6 Score=21.46 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=15.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEE
Q ss_conf 9998699899999999999889899
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNV 27 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v 27 (236)
||-=.|++.=+..+...|++.||++
T Consensus 14 il~esd~plgak~Ia~el~kRGy~i 38 (325)
T COG1693 14 ILAESDEPLGAKIIALELRKRGYNI 38 (325)
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCH
T ss_conf 9986388643689999998614541
No 191
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=74.99 E-value=7.1 Score=19.67 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=48.0
Q ss_pred EEEEECCC----HHHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 59998699----89999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDD----KALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd----~~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
||-++.+| ......+...+++.|.+|.. ..+....+..+....||+|++-. ...++..+++..++..
T Consensus 143 ~vaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~~pd~i~~~~--~~~~~~~~~~q~~~~G 220 (345)
T cd06338 143 KVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAG--HFPDAVLLVRQMKELG 220 (345)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECC--CCCHHHHHHHHHHHCC
T ss_conf 89999648630368999999999865974999997179876589999999867999999907--7715999999999769
Q ss_pred CCCCEECCC
Q ss_conf 233100133
Q gi|254780893|r 71 ISTPVCILS 79 (236)
Q Consensus 71 ~~~pII~ls 79 (236)
...|++..+
T Consensus 221 ~~~~~~~~~ 229 (345)
T cd06338 221 YNPKALYMT 229 (345)
T ss_pred CCCCEEEEE
T ss_conf 998889984
No 192
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=74.64 E-value=5.6 Score=20.29 Aligned_cols=10 Identities=30% Similarity=-0.057 Sum_probs=4.5
Q ss_pred CCHHHHHHHH
Q ss_conf 7899999987
Q gi|254780893|r 169 LTKEMFLNHL 178 (236)
Q Consensus 169 vsr~~i~~~v 178 (236)
=|-+|..+.+
T Consensus 189 ~tl~ea~~a~ 198 (269)
T cd01568 189 ETLEEAEEAL 198 (269)
T ss_pred CCHHHHHHHH
T ss_conf 9899999999
No 193
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=74.52 E-value=6.5 Score=19.90 Aligned_cols=51 Identities=20% Similarity=0.349 Sum_probs=38.1
Q ss_pred CEEEEECC-----CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 95999869-----989999999999988989999999899999998579947883114
Q gi|254780893|r 1 MRILLIED-----DKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLG 53 (236)
Q Consensus 1 mkILived-----d~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~ 53 (236)
||+||+=. -..+++.+...|.+.|+.|+..+.-.... ++-..||.||+...
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~--~~l~~ydavVIgAs 56 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEE--PALEDYDAVVIGAS 56 (175)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHC--CCHHHCCEEEEECC
T ss_conf 916999834777589999999997554177056536565402--68411756998241
No 194
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=74.02 E-value=7.5 Score=19.52 Aligned_cols=76 Identities=9% Similarity=0.058 Sum_probs=46.2
Q ss_pred EEEEECCC----HHHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 59998699----89999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDD----KALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd----~~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
|+.+|-+| ..+...+...+++.|.++.. ..|....+..+....||+|++-. .+.++..++++.++.+
T Consensus 137 kva~i~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~--~~~~~~~~~~q~~~~G 214 (334)
T cd06327 137 KWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLAN--AGADTVNAIKQAAEFG 214 (334)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHCC
T ss_conf 79999537456699999999999965987999996289975568999887755999999916--6547999999999749
Q ss_pred CCCCEECCC
Q ss_conf 233100133
Q gi|254780893|r 71 ISTPVCILS 79 (236)
Q Consensus 71 ~~~pII~ls 79 (236)
...++.+.+
T Consensus 215 ~~~~~~~~~ 223 (334)
T cd06327 215 LTKGQKLAG 223 (334)
T ss_pred CCCCCEEEE
T ss_conf 988867886
No 195
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=73.91 E-value=7.5 Score=19.51 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=48.8
Q ss_pred EEEEECCCHH----HHHHHHHHHHHC--CCEEEE--------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 5999869989----999999999988--989999--------99989999999857994788311498743343111222
Q gi|254780893|r 2 RILLIEDDKA----LAHSIELMLKSE--NFNVYV--------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALR 67 (236)
Q Consensus 2 kILivedd~~----~~~~l~~~L~~~--g~~v~~--------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir 67 (236)
||.++.+|.. ....+...++.. |+++.. ..|....+..+....||+|++-. ...++..+++.+|
T Consensus 145 ~vai~~~d~~~g~~~~~~~~~~~~~~~~g~~vv~~~~~p~~~~~Df~~~i~~i~~~~pd~v~~~~--~~~~~~~~~kq~~ 222 (342)
T cd06329 145 KVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGN--WGNDLLLLVKQAA 222 (342)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHH
T ss_conf 69993699737699999999999981699588767852588877669999999866999999937--7556999999999
Q ss_pred CCCCCCCEECCCC
Q ss_conf 2322331001333
Q gi|254780893|r 68 VAKISTPVCILSG 80 (236)
Q Consensus 68 ~~~~~~pII~ls~ 80 (236)
+.+...|++..+.
T Consensus 223 ~~g~~~~~~~~~~ 235 (342)
T cd06329 223 DAGLKLPFYTPYL 235 (342)
T ss_pred HCCCCCCEEEEEC
T ss_conf 7699981899707
No 196
>PRK08904 consensus
Probab=73.38 E-value=2.6 Score=22.27 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHCCC-EEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCC
Q ss_conf 9998898-99999998999999985-799478831149874334311122223223310013332100000112322101
Q gi|254780893|r 19 MLKSENF-NVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGAD 96 (236)
Q Consensus 19 ~L~~~g~-~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAd 96 (236)
.|.+.+. -|....+.++++..... ..=.+=++.+.|-.-++++.++.+++..+++ +|-...--+.++.-++.++||+
T Consensus 6 ~L~~~~iipVir~~~~~~a~~~a~al~~~Gi~~iEiTlrtp~a~~~i~~l~~~~p~~-~vGaGTVl~~e~~~~a~~aGA~ 84 (207)
T PRK08904 6 ILTAGAVVPVMAIDDLSTAVDLSRALVEGGIPTLEITLRTPVGLDAIRLIAKEVPNA-IVGAGTVTNPEQLKAVEDAGAV 84 (207)
T ss_pred HHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEEECCCHHHHHHHHHCCCC
T ss_conf 998699799997699999999999999879988999579913999999999868987-6855313689999999984999
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 1122332221111
Q gi|254780893|r 97 DYISKPFNKEELV 109 (236)
Q Consensus 97 dyi~KP~~~~eL~ 109 (236)
|+.-|.--.+++
T Consensus 85 -FiVSP~~~~~v~ 96 (207)
T PRK08904 85 -FAISPGLHESLA 96 (207)
T ss_pred -EEECCCCCHHHH
T ss_conf -998489989999
No 197
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=72.94 E-value=7.9 Score=19.36 Aligned_cols=18 Identities=17% Similarity=-0.121 Sum_probs=7.0
Q ss_pred HHHHHHHHHHCCCCEEEE
Q ss_conf 899999998579947883
Q gi|254780893|r 33 GEDGIELCKFYEFDAIIL 50 (236)
Q Consensus 33 ~~eal~~~~~~~~DlvIl 50 (236)
....+..+....||+|++
T Consensus 182 f~~~l~~i~~~~pD~v~~ 199 (347)
T cd06336 182 FSPIVTKLLAEKPDVIFL 199 (347)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 799999999659699999
No 198
>TIGR00988 hip integration host factor, beta subunit; InterPro: IPR005685 Integration host factor (IHF) is a heterodimeric protein consisting of alpha (IPR005684 from INTERPRO) and beta subunits. IHF binds the minor groove of DNA in a sequence-specific manner to induce a large bend. This bending stabilises distinct DNA conformations that are required during several bacterial processes, such as recombination, transposition, replication and transcription .; GO: 0003677 DNA binding, 0005694 chromosome.
Probab=72.74 E-value=6.1 Score=20.05 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=44.6
Q ss_pred CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCE-EEECCCC
Q ss_conf 8999999871887777753036678999885110678884388887820-2645688
Q gi|254780893|r 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG-YVLRENA 225 (236)
Q Consensus 170 sr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~G-Y~l~~~~ 225 (236)
.+.||.+.+-..+.....++|+..|+.+=-.+...-..++.|+ +||+| |.+..++
T Consensus 2 ~kSELI~~i~~~~~~l~~k~VE~~v~~~lE~~~~alA~GdRiE-~RGFGsFSl~~R~ 57 (94)
T TIGR00988 2 TKSELIERIATEQSHLFAKDVEKAVKTMLEEMIEALARGDRIE-IRGFGSFSLHYRA 57 (94)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE-EECCCCEEECCCC
T ss_conf 3378889987407875533389999999999999860798467-6014420000057
No 199
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.64 E-value=3.5 Score=21.53 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHHHHHCCC-EEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCC
Q ss_conf 99999998898-99999998999999985-79947883114987433431112222322331001333210000011232
Q gi|254780893|r 15 SIELMLKSENF-NVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92 (236)
Q Consensus 15 ~l~~~L~~~g~-~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~ 92 (236)
.+...|+..+. -|....+.+++...... -.--+=++.+.|-.-++++.++.+++..|++- |-...--+.++.-++.+
T Consensus 7 ~i~~~l~~~~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlrt~~a~~~I~~l~~~~p~~~-vGaGTVl~~e~~~~a~~ 85 (212)
T PRK06015 7 KLLSILKGQPVIPVLLIDDVEHAVPLARALARGGLPAIEITLRTPAALDAIRAVAAEVEEAI-VGAGTILNAKQFEDAAK 85 (212)
T ss_pred HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHHH
T ss_conf 99999987997999977999999999999998799889996899519999999998699967-95421156999999998
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 210111223322211111
Q gi|254780893|r 93 SGADDYISKPFNKEELVA 110 (236)
Q Consensus 93 ~GAddyi~KP~~~~eL~a 110 (236)
+|| +|+.-|.-..+++.
T Consensus 86 aGA-~FiVSP~~~~~v~~ 102 (212)
T PRK06015 86 AGS-RFIVSPGTTQELLA 102 (212)
T ss_pred CCC-CEEECCCCCHHHHH
T ss_conf 499-89985899999999
No 200
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=72.59 E-value=8.1 Score=19.31 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCC-CCCCCEECCCCCCCHHC
Q ss_conf 9999999999889899999---99899999998579947883114987-4334311122223-22331001333210000
Q gi|254780893|r 12 LAHSIELMLKSENFNVYVT---DLGEDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVA-KISTPVCILSGMSSIED 86 (236)
Q Consensus 12 ~~~~l~~~L~~~g~~v~~a---~~~~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~-~~~~pII~ls~~~~~~~ 86 (236)
-...+...|+..||.|... ...++..+.+.+..||+|-+...+.. .+.+..+..+++. .+++||++-..+.+...
T Consensus 15 g~~~v~~~l~~~g~~v~~lg~~~~~e~~v~~~~~~~~dvVgiS~~~~~~~~~~~~~~~~~~~~~~~v~vv~GG~~~t~~~ 94 (125)
T cd02065 15 GKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPTADP 94 (125)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH
T ss_conf 89999999997899899899988999999999860899999852113018999999999996799875997588798673
Q ss_pred ---CCCCCCCCCCCCC
Q ss_conf ---0112322101112
Q gi|254780893|r 87 ---KVRGLQSGADDYI 99 (236)
Q Consensus 87 ---~~~al~~GAddyi 99 (236)
.+.....|.+.+-
T Consensus 95 ~~~~~d~v~~Gege~~ 110 (125)
T cd02065 95 EEPKVDAVVIGEGEYA 110 (125)
T ss_pred HHHCCCEEEECCEEEE
T ss_conf 5527675757784582
No 201
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=72.54 E-value=2.9 Score=22.01 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHCCCCEEEE-----CCCCCCCCC----CCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCC---CCCCCCC
Q ss_conf 9899999998579947883-----114987433----431112222322331001333210000011232---2101112
Q gi|254780893|r 32 LGEDGIELCKFYEFDAIIL-----DLGLTDIPG----FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ---SGADDYI 99 (236)
Q Consensus 32 ~~~eal~~~~~~~~DlvIl-----D~~lp~~~G----~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~---~GAddyi 99 (236)
-..+.++.+..+++|+||+ |-.-|+.-. .+++..|...++-+|+++++++.|..+++.+-+ .--+=||
T Consensus 36 ~L~~l~~~~~~e~~Da~lvAGDvFD~~~P~~ea~~L~~~~l~~L~~~~~R~p~Vvi~GNHD~~~~Ls~~~~Ll~~~~~~v 115 (275)
T TIGR00619 36 FLDDLLEILKAEQVDALLVAGDVFDTANPPAEAQELFYAFLLNLSDANPRLPIVVISGNHDSADRLSAAKKLLKELGVFV 115 (275)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCHHHHHHHHCCCEE
T ss_conf 99999999973899889970000788988799999999999999853896127870478887786111677897709544
Q ss_pred CCCCCCCCCC
Q ss_conf 2332221111
Q gi|254780893|r 100 SKPFNKEELV 109 (236)
Q Consensus 100 ~KP~~~~eL~ 109 (236)
.--.+.++..
T Consensus 116 ~~~~~~~~~~ 125 (275)
T TIGR00619 116 VGKPEEEPQI 125 (275)
T ss_pred EECCCCCCEE
T ss_conf 2024778602
No 202
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=72.41 E-value=8.2 Score=19.29 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=20.9
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHC------CCCCCCHHHHHHHH
Q ss_conf 22222222223-3333222464116889998718------99737899999987
Q gi|254780893|r 132 LSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLR------KNTTLTKEMFLNHL 178 (236)
Q Consensus 132 ~~~d~~~~~v~-~~g~~i~LT~~E~~lL~~L~~~------~g~vvsr~~i~~~v 178 (236)
+-+|.-.-+++ |-+.+.. +.--|.|++-|.+. -|++-|.++..+.+
T Consensus 111 ~G~D~I~TTL~GYT~~t~~-~~pD~~ll~~l~~~~~pvIaEGri~tPe~a~~a~ 163 (192)
T pfam04131 111 LGVDIVGTTLSGYTGGSNP-AEPDFQLVKTLSEAGCFVIAEGRYNTPELAKKAI 163 (192)
T ss_pred CCCCEEECCCCCCCCCCCC-CCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 5999998232557899999-9997899999986899399857989999999999
No 203
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=72.05 E-value=6.7 Score=19.80 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++.+..++.+..- -| .|.++|.+.+ ..+.+++.++++|.|+||...
T Consensus 125 ~L~~~~r~il~l~~~-~g--~s~~eIA~~l-----gis~~tv~~~l~Ra~~~Lr~~ 172 (180)
T PRK11924 125 ALPEKQREVFLLRYV-EG--LSYQEIADQL-----GVPLGTVKSRLRRARQKLREC 172 (180)
T ss_pred HCCHHHHHHHHHHHH-HC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 599999999999999-68--5999999998-----949999999999999999999
No 204
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=71.91 E-value=3.5 Score=21.50 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC---CCHHCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 99999985799478831149874334311122223223310013332---10000011232210111-2233222111
Q gi|254780893|r 35 DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM---SSIEDKVRGLQSGADDY-ISKPFNKEEL 108 (236)
Q Consensus 35 eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~---~~~~~~~~al~~GAddy-i~KP~~~~eL 108 (236)
+....+..++||++|+ +.-|+.| +.+.+.+|+..|.+|||---+. .=...+...+..-+|-- ..-||+++..
T Consensus 76 ~~~~~i~~~kpD~~i~-IDsPdFn-l~vak~lrk~~p~i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~y 151 (381)
T COG0763 76 ELVRYILANKPDVLIL-IDSPDFN-LRVAKKLRKAGPKIKIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPFEPAFY 151 (381)
T ss_pred HHHHHHHHCCCCEEEE-ECCCCCC-HHHHHHHHHHCCCCCEEEEECCCEEEECHHHHHHHHHHHHHEEEECCCCHHHH
T ss_conf 9999998559988999-6789886-49999999708999869997853056552168999997617214367788999
No 205
>PRK13119 consensus
Probab=71.87 E-value=3.2 Score=21.73 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=49.7
Q ss_pred EEEECCHHHHHHHHH---HCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCC
Q ss_conf 999999899999998---579947883114987--433--------------------4311122223223310013332
Q gi|254780893|r 27 VYVTDLGEDGIELCK---FYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 27 v~~a~~~~eal~~~~---~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~ 81 (236)
+....|.+..++++. ..-.|++=+.+..++ .|| +++++.+|+.++.+||+++|.+
T Consensus 22 taG~P~~e~s~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlMtY~ 101 (261)
T PRK13119 22 TVGDPDIRTTLALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVVLMGYL 101 (261)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECH
T ss_conf 48389989999999999966999999789888866658999999999997799788999999986514899898998403
Q ss_pred CCH------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 100------00011232210111223322211
Q gi|254780893|r 82 SSI------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 82 ~~~------~~~~~al~~GAddyi~KP~~~~e 107 (236)
+.. ...-++-++|+|..|.--..++|
T Consensus 102 N~i~~yG~e~F~~~~~~~GvdGvIipDLP~ee 133 (261)
T PRK13119 102 NPVHKMGYREFAQEAAKAGVDGVLTVDSPVET 133 (261)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 78988629999999997598579836899788
No 206
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=71.79 E-value=8.5 Score=19.20 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 8999999999998898999999989------9999998579947883114987433431112222322331001333210
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLGE------DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~~------eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
..+...+...+++.||++..+.+.. ++++.+....+|-+|+--. .+.-.....+.+ ..+|++++.....
T Consensus 74 ~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~---~~~~~~~~~l~~--~~~P~V~i~~~~~ 148 (333)
T COG1609 74 AEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLGE---RPNDSLLELLAA--AGIPVVVIDRSPP 148 (333)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHH--CCCCEEEEECCCC
T ss_conf 99999999999983998999837898699999999998769898999358---788088999986--5999899937677
No 207
>PRK13112 consensus
Probab=71.19 E-value=3.5 Score=21.53 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=48.6
Q ss_pred EECCHHHHHHH---HHHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 99998999999---98579947883114987--433--------------------431112222322331001333210
Q gi|254780893|r 29 VTDLGEDGIEL---CKFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 29 ~a~~~~eal~~---~~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
...+.+..++. +...-.|++=+.+..++ .|| +++++.+|+..+.+||++++.++.
T Consensus 27 G~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~PivlM~Y~N~ 106 (279)
T PRK13112 27 GDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKTLYLAREFRKDDDTTPIVLMGYYNP 106 (279)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECHH
T ss_conf 38997899999999987799989978998986665799999999999769968899999998513489988799851249
Q ss_pred H------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------00011232210111223322211
Q gi|254780893|r 84 I------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 84 ~------~~~~~al~~GAddyi~KP~~~~e 107 (236)
. ...-++-++|+|..|.--..++|
T Consensus 107 i~~~G~e~F~~~~~~aGvdGvIipDLP~eE 136 (279)
T PRK13112 107 IYIYGVERFLTDAKAAGVDGLIVVDLPPEM 136 (279)
T ss_pred HHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 988479999999997399879846999788
No 208
>PRK06857 consensus
Probab=70.93 E-value=3.8 Score=21.30 Aligned_cols=81 Identities=23% Similarity=0.212 Sum_probs=29.3
Q ss_pred EEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999998999999985-799478831149874334311122223223310013332100000112322101112233222
Q gi|254780893|r 27 VYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK 105 (236)
Q Consensus 27 v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~ 105 (236)
|....+.+++...... ..--+=++.+.|-.-++++.++.+++..|++-|=.-| --+.++.-++.++|| +|+.-|.-.
T Consensus 17 Vir~~~~~~a~~~~~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~p~~~vGaGT-V~~~e~~~~a~~aGA-~FiVSP~~~ 94 (209)
T PRK06857 17 VIAIDDAEDILPLAKVLAENGLPVAEITFRSAAAAEAIRLLREAYPDMLIGAGT-VLTPEQVDAAKEAGA-DFIVSPGFN 94 (209)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHCCC-CEEECCCCC
T ss_conf 997599999999999999879988999589932999999999758994899993-767999999998399-999908999
Q ss_pred CCCC
Q ss_conf 1111
Q gi|254780893|r 106 EELV 109 (236)
Q Consensus 106 ~eL~ 109 (236)
.+++
T Consensus 95 ~~v~ 98 (209)
T PRK06857 95 PNTV 98 (209)
T ss_pred HHHH
T ss_conf 9999
No 209
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=70.71 E-value=8.9 Score=19.06 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 899999999999889899999998------999999985799478831149874334311122223223310013332
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
..+...+...+++.||++..+.+. .+.++.+....+|-+|+-.. +.+-.+....++ ...+|++++...
T Consensus 15 ~~~~~gie~~~~~~Gy~~~i~~t~~~~~~e~~~i~~l~~~~vdGiIi~~~--~~~~~~~~~~l~--~~~iPvV~~~~~ 88 (266)
T cd06282 15 AECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVA--DAATSPALDLLD--AERVPYVLAYND 88 (266)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCHHHHHHHH--HCCCCEEEEECC
T ss_conf 99999999999987998999979999799999999999659987999637--877559999998--559978999504
No 210
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=70.71 E-value=4 Score=21.14 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCC-CCCCC--CCCCCCHHHHHHHHHHC------CCCCCCHHHHHHHH
Q ss_conf 222222222223-33332--22464116889998718------99737899999987
Q gi|254780893|r 131 DLSVNLDAKTVE-VQGHR--IHLTGKEYQMIELLSLR------KNTTLTKEMFLNHL 178 (236)
Q Consensus 131 ~~~~d~~~~~v~-~~g~~--i~LT~~E~~lL~~L~~~------~g~vvsr~~i~~~v 178 (236)
++-+|.-..+++ |-+.+ -.+..--|+|++-|.+. -|++-|-++..+.+
T Consensus 137 ~~G~D~V~TTLsGYT~~t~~~~~~~pD~~lv~~l~~~~~pvIaEGri~tPe~a~~al 193 (222)
T PRK01130 137 KLGFDFIGTTLSGYTEYTEGETPEEPDFALLKELLKAGCPVIAEGRINTPEQAKKAL 193 (222)
T ss_pred HCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 849999972334567676778789986999999995899899747989999999999
No 211
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.61 E-value=9 Score=19.04 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 899999999999889899999998------9999999857994788311498743343111222232233100133321
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
..+...+...+...||.+..+.+. .+.+..+....+|-+|+- |....-+....++ ...+|++++....
T Consensus 15 ~~l~~~i~~~~~~~gy~~~i~~s~~~~~~e~~~i~~l~~~~vdGiIi~---~~~~~~~~~~~l~--~~~iPvV~~~~~~ 88 (265)
T cd06285 15 ATMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILG---DARSDDHFLDELT--RRGVPFVLVLRHA 88 (265)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHHHH--HCCCCEEEECCCC
T ss_conf 999999999999869989999799998999999999995699999976---8879989999999--6799789985568
No 212
>PRK13116 consensus
Probab=70.28 E-value=4.2 Score=21.05 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=48.7
Q ss_pred ECCHHHHHHHH---HHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCC-
Q ss_conf 99989999999---8579947883114987--433--------------------431112222322331001333210-
Q gi|254780893|r 30 TDLGEDGIELC---KFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSS- 83 (236)
Q Consensus 30 a~~~~eal~~~---~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~- 83 (236)
..+.+..++.+ ...-.|++=+.+..++ .|| +++++.+|+..+.+|+++++.++.
T Consensus 27 ~P~~~~s~~~l~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~~~~v~~ir~~~~~~PivlM~Y~N~i 106 (278)
T PRK13116 27 DPSPEEAFQIISTAIEAGADALELGVPFSDPVADGPTVAESHLRALDGGATVDSALEQIKRVRAAYPEVPIGMLIYGNVP 106 (278)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHH
T ss_conf 89989999999999966999999799988856668999999999997698678999999984035898768998057288
Q ss_pred -----HHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----000011232210111223322211
Q gi|254780893|r 84 -----IEDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 84 -----~~~~~~al~~GAddyi~KP~~~~e 107 (236)
+...-++-++|+|..|.--..++|
T Consensus 107 ~~~G~e~F~~~~~~aGvdGlIipDLP~eE 135 (278)
T PRK13116 107 FTRGLDRFYQEFAEAGADSILLPDVPVRE 135 (278)
T ss_pred HHCCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 77279999999977697589946999788
No 213
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=70.13 E-value=8.9 Score=19.05 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=48.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC--CE----EEEECCHHHHHHHHHHCCCCEEEECCCCCCCC-----CCCCCCCCCCCC
Q ss_conf 59998699899999999999889--89----99999989999999857994788311498743-----343111222232
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSEN--FN----VYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-----GFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g--~~----v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~-----G~~~~~~ir~~~ 70 (236)
||-+||=|+.+.+.-.++|.... .. -....||.+.+.-... .||+||+|..=|... .-++.+..++.-
T Consensus 102 ~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L 180 (282)
T COG0421 102 RITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIVDSTDPVGPAEALFTEEFYEGCRRAL 180 (282)
T ss_pred EEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCC-CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 37999708899999998666754335797368996107999874887-67789985889988430237799999999862
Q ss_pred CCCCEECC
Q ss_conf 23310013
Q gi|254780893|r 71 ISTPVCIL 78 (236)
Q Consensus 71 ~~~pII~l 78 (236)
..-.|++.
T Consensus 181 ~~~Gi~v~ 188 (282)
T COG0421 181 KEDGIFVA 188 (282)
T ss_pred CCCCEEEE
T ss_conf 88968999
No 214
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=69.80 E-value=9 Score=19.05 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=49.5
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCC--CCCCCCCCCCCCCCCCCEECCC
Q ss_conf 998699899999999999889899999998999999985799478831149--874--3343111222232233100133
Q gi|254780893|r 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDI--PGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 4 Livedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~l--p~~--~G~~~~~~ir~~~~~~pII~ls 79 (236)
|+||-...+...+...|++.|..+........+........||.+|+--+. |.- .-.++++.+. ...+||+-+.
T Consensus 1 liiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~d~iilspGpg~p~~~~~~~~~i~~~~--~~~~PiLGIC 78 (187)
T pfam00117 1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELLNPDGIIISPGPGSPGDAGGAIEAIKELR--ENKIPILGIC 78 (187)
T ss_pred CEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHH--HCCCCEEEEE
T ss_conf 98937863899999999868997999989998699985259998999199861101345899999999--7799899998
No 215
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=69.36 E-value=4.9 Score=20.64 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=44.1
Q ss_pred HHCCCCEEEEC-------CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC---HHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 85799478831-------14987433431112222322331001333210---0000112322101112233222111
Q gi|254780893|r 41 KFYEFDAIILD-------LGLTDIPGFEVLRALRVAKISTPVCILSGMSS---IEDKVRGLQSGADDYISKPFNKEEL 108 (236)
Q Consensus 41 ~~~~~DlvIlD-------~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~---~~~~~~al~~GAddyi~KP~~~~eL 108 (236)
....+-++.+| |+..=-+.+.-+-.||+..|.+|||.|||-.+ .+|+++.|..----...-.||=.-|
T Consensus 130 ~~~~~~~iAvDEAHCiSqWGHDFR~~Y~~LG~Lk~~fP~vP~~ALTATA~~~~~~Di~~~L~l~~p~~~~~SFdRPNl 207 (497)
T TIGR00614 130 ERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRILNLKNPQVFITSFDRPNL 207 (497)
T ss_pred HHCCCEEEEEECEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 644966999832154358888740799996578885488743643405786789999987221366246404668763
No 216
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=69.34 E-value=3 Score=21.94 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=53.8
Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEECCC------CCC--CCCC-CCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 9999999889899999998999999985--79947883114------987--4334-31112222322331001333210
Q gi|254780893|r 15 SIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLG------LTD--IPGF-EVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 15 ~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~DlvIlD~~------lp~--~~G~-~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
.++.+-++.+= ....+..++++...+ ..|=+|++|-. |.| ..|+ |=-.+||+.+ +.-||+|+-+.
T Consensus 398 AIk~~V~~~~G--~ip~dlD~av~qVa~~GgTPLvVc~dn~iyGVIyLKDiVK~Gi~ERF~qLR~~G--ikTiM~TGDNr 473 (675)
T TIGR01497 398 AIKKFVEERKG--RIPKDLDEAVDQVAKQGGTPLVVCVDNKIYGVIYLKDIVKSGIKERFEQLRKMG--IKTIMLTGDNR 473 (675)
T ss_pred HHHHHHHHCCC--CCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHCC--CEEEEECCCCH
T ss_conf 88789876379--778376788999873289847999757789889873013786045788872258--66899728975
Q ss_pred HHCCCCCCCCCCCCCCC
Q ss_conf 00001123221011122
Q gi|254780893|r 84 IEDKVRGLQSGADDYIS 100 (236)
Q Consensus 84 ~~~~~~al~~GAddyi~ 100 (236)
.-.-.-|-|+|.||||.
T Consensus 474 lTAa~IA~EAGVDdFiA 490 (675)
T TIGR01497 474 LTAAVIAKEAGVDDFIA 490 (675)
T ss_pred HHHHHHHHHCCCCCCCC
T ss_conf 78999997628885201
No 217
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=69.31 E-value=8.6 Score=19.15 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=36.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEE
Q ss_conf 68899987189973789999998718877777530366789998851106788843888878202
Q gi|254780893|r 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 (236)
Q Consensus 155 ~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY 219 (236)
..|.++|..||++.++=++..+..=--.+..++. + -=+|+-|+...-+. |.|+.|.|=
T Consensus 8 v~l~~~L~~nP~kLi~L~~F~d~y~~AKSsiSED-i----~I~~~~le~~~~G~--~~T~~GAaG 65 (269)
T TIGR01743 8 VVLTKYLIENPNKLISLNKFSDKYESAKSSISED-I----VIIKEVLEKFDIGK--LETVPGAAG 65 (269)
T ss_pred HHHHHHHHHCCEEECCCHHHHHHHHHHHCCHHHH-H----HHHHHHHHHCCCCE--EEEECCCCC
T ss_conf 7767777427801027005787764211110144-8----99999850068864--786147889
No 218
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=69.29 E-value=9.6 Score=18.87 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=41.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 959998699899999999999889899999998999999985799478831149874334
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~ 60 (236)
|||-|||=..---.++..+|+..|+++....+.++. ...|.+|+ |+.-.+
T Consensus 1 MkI~IiDyG~GNi~Sv~~al~~lg~~~~i~~~~~~i------~~~d~lIL----PGVGsF 50 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAFERLGYNPVVSRDPDVI------LAADKLFL----PGVGTA 50 (196)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEECCHHHH------HHCCEEEE----CCCCCH
T ss_conf 989999279558999999999879979996798998------43897997----189988
No 219
>PRK13117 consensus
Probab=69.18 E-value=4 Score=21.13 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=49.4
Q ss_pred EEEECCHHHHHHHH---HHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999989999999---8579947883114987--433--------------------4311122223223310013332
Q gi|254780893|r 27 VYVTDLGEDGIELC---KFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 27 v~~a~~~~eal~~~---~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~ 81 (236)
+-...|.+..++.+ ...-.|++=+.+..++ .|| +++++.+|+..+.+|++++|.+
T Consensus 24 taG~P~~~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlM~Y~ 103 (268)
T PRK13117 24 TLGDPSPELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRALAAGVTPAQCFELLAKIRAKYPTIPIGLLLYA 103 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 27089979999999999966999899789988856557999999999984599699999999885004789877997326
Q ss_pred CCH------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 100------00011232210111223322211
Q gi|254780893|r 82 SSI------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 82 ~~~------~~~~~al~~GAddyi~KP~~~~e 107 (236)
+.. ...-++-++|+|+.|.--..++|
T Consensus 104 N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE 135 (268)
T PRK13117 104 NLVFANGIDNFYARCAEAGVDSVLIADVPVEE 135 (268)
T ss_pred CHHHHCCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 28987179999999997698779857999788
No 220
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=69.17 E-value=9.6 Score=18.85 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999999999889899999998------999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+++.||.+..+.+. .++++.+....+|-+|+- |....-+..+.++ ...+|++++-..
T Consensus 16 ~~~~~ie~~~~~~Gy~~~i~~s~~d~~~e~~~i~~l~~~~vdGiIi~---~~~~~~~~~~~l~--~~~iP~V~~~~~ 87 (268)
T cd06273 16 RVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALI---GLDHSPALLDLLA--RRGVPYVATWNY 87 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHHHH--HCCCCEEEECCC
T ss_conf 99999999999859999999589998999999999996599999991---8999989999999--759989998465
No 221
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=69.02 E-value=2.4 Score=22.47 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCCCEEEEC-----CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCC
Q ss_conf 999999985799478831-----14987433431112222322331001333210000011
Q gi|254780893|r 34 EDGIELCKFYEFDAIILD-----LGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVR 89 (236)
Q Consensus 34 ~eal~~~~~~~~DlvIlD-----~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~ 89 (236)
+++.+.+....+|+|||| +.+.=+|=-+++..|++ .|.---++||+++.-.+.++
T Consensus 104 ~~a~~~~~~~~~dlvLLDE~~~~l~~GyL~veeV~~~L~~-kp~~~~vvlTGR~aP~~L~~ 163 (191)
T TIGR00708 104 QKAKEVLADSEYDLVLLDELTVALKFGYLDVEEVVEVLQE-KPKSQHVVLTGRGAPQELVE 163 (191)
T ss_pred HHHHHHHCCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHC-CCCCCEEEEECCCCCHHHHH
T ss_conf 9999986498877640342345553489788999999855-84567788866878688997
No 222
>PRK13121 consensus
Probab=68.94 E-value=4.1 Score=21.10 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=48.9
Q ss_pred EECCHHHHHHHH---HHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 999989999999---8579947883114987--433--------------------431112222322331001333210
Q gi|254780893|r 29 VTDLGEDGIELC---KFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 29 ~a~~~~eal~~~---~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
...|.+..++.+ ...-.|++=+.+..++ .|| +++++++|+.+.++|++++|.++.
T Consensus 26 G~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~PivlM~Y~N~ 105 (265)
T PRK13121 26 GDPDPAKTVELMHALVEGGADVIELGVPFSDPMADGPVIQRASERALAHGVSLRQVLAMVKEFRETNQTTPVVLMGYANP 105 (265)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHH
T ss_conf 18998999999999997699999978988997765899999999999779984677999998310379999898621459
Q ss_pred HH------CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00------0011232210111223322211
Q gi|254780893|r 84 IE------DKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 84 ~~------~~~~al~~GAddyi~KP~~~~e 107 (236)
.. ..-++-++|+|..|.--..++|
T Consensus 106 i~~yG~e~F~~~~~~aGvdGlIipDLP~eE 135 (265)
T PRK13121 106 IERMGYDAFAAAARAAGVDGVLVVDYPPEE 135 (265)
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 999719999999987298734348999899
No 223
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=68.93 E-value=4.2 Score=21.01 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCC-------CCCCCHHHHHHHH
Q ss_conf 2222222222223-33332224641168899987189-------9737899999987
Q gi|254780893|r 130 GDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRK-------NTTLTKEMFLNHL 178 (236)
Q Consensus 130 g~~~~d~~~~~v~-~~g~~i~LT~~E~~lL~~L~~~~-------g~vvsr~~i~~~v 178 (236)
..+-+|.-..+++ |-+.+-....--|.|++-|.+.. |++-|.++..+.+
T Consensus 140 ~~~G~D~vgTTL~GYT~~t~~~~~PD~~lv~~l~~~~~~pvIaEGri~tPe~a~~a~ 196 (219)
T cd04729 140 AKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKAL 196 (219)
T ss_pred HHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 984998997021456778788999878999999997599399706989999999999
No 224
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.72 E-value=4.9 Score=20.61 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHHHHCCC-EEEEECCHHHHHHHHH---HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCC
Q ss_conf 99999998898-9999999899999998---5799478831149874334311122223223310013332100000112
Q gi|254780893|r 15 SIELMLKSENF-NVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRG 90 (236)
Q Consensus 15 ~l~~~L~~~g~-~v~~a~~~~eal~~~~---~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~a 90 (236)
.+-..|++.+. -|....+.++++.... ..-+. ++.+.|-.-++++.++.+++..+++ +|-...--+.++.-.+
T Consensus 5 ~~l~~L~~~~vi~Vlr~~~~~~a~~~~~al~~gGi~--~iEiTl~t~~a~~~I~~l~~~~p~~-~iGaGTV~~~e~~~~a 81 (210)
T PRK07455 5 DWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMR--LIEITWNSDQPAELISQLREKLPEC-IIGTGTLLTLEDLEEA 81 (210)
T ss_pred HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHCCCC-EEEEEECCCHHHHHHH
T ss_conf 999999979979999759999999999999987998--8999689988999999999878996-8988818789999999
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 32210111223322211111
Q gi|254780893|r 91 LQSGADDYISKPFNKEELVA 110 (236)
Q Consensus 91 l~~GAddyi~KP~~~~eL~a 110 (236)
.++|| +|+.-|.-..+++.
T Consensus 82 ~~aGA-~FiVSP~~~~~vi~ 100 (210)
T PRK07455 82 IAAGA-QFCFTPHVDLELIQ 100 (210)
T ss_pred HHCCC-CEEECCCCCHHHHH
T ss_conf 98699-99986888899999
No 225
>pfam07638 Sigma70_ECF ECF sigma factor. These proteins are probably RNA polymerase sigma factors belonging to the extra-cytoplasmic function (ECF) subfamily and show sequence similarity to pfam04542 and pfam04545.
Probab=68.64 E-value=8.9 Score=19.07 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 22464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 148 i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
..|++....++. |..-.| .|..||.+.+ ..+.+||+.++++-|++|..
T Consensus 134 ~~Lpp~~r~v~~-L~~~eg--lS~~EIAe~L-----gis~~TVk~rl~~Ar~~Lr~ 181 (185)
T pfam07638 134 FSLSPRQARLVE-LRFFAG--LSNDEIAERL-----GVSERTVERNWALARAWLHR 181 (185)
T ss_pred HCCCHHHHHHHH-HHHHCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 648998888988-899759--9999999997-----96998999999999999998
No 226
>PRK13118 consensus
Probab=68.47 E-value=4.1 Score=21.11 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=50.0
Q ss_pred EECCHHHHHHHHH---HCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 9999899999998---579947883114987--433--------------------431112222322331001333210
Q gi|254780893|r 29 VTDLGEDGIELCK---FYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 29 ~a~~~~eal~~~~---~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
...|.+..++.+. ..-.|++=+.+..++ .|| +++++.+|+..+++|++++|.++.
T Consensus 26 G~P~~e~t~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~~PivlM~Y~N~ 105 (269)
T PRK13118 26 GDPSPEASVPLLHGLVAAGADVIELGMPFSDPMADGPAIQLASERALAAGQGLADVLQMVREFRQGDQTTPVVLMGYLNP 105 (269)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCH
T ss_conf 18998999999999997699999978988886665799999999999679868899999999864389999899740007
Q ss_pred H------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------00011232210111223322211
Q gi|254780893|r 84 I------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 84 ~------~~~~~al~~GAddyi~KP~~~~e 107 (236)
. ...-++-++|+|+.|.--..++|
T Consensus 106 i~~~G~e~F~~~~~~~GvdGvIipDLP~ee 135 (269)
T PRK13118 106 IEIYGYERFVAQAKEAGVDGLILVDLPPEE 135 (269)
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 878639999999998599746458999789
No 227
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=68.31 E-value=4.1 Score=21.12 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=46.7
Q ss_pred CCHHHHHHH---HHHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCCH-
Q ss_conf 998999999---98579947883114987--433--------------------4311122223223310013332100-
Q gi|254780893|r 31 DLGEDGIEL---CKFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSSI- 84 (236)
Q Consensus 31 ~~~~eal~~---~~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~~- 84 (236)
.|.+..++. +...-.|++=+.+..++ .|| +++++.+|...+++|+++++.++..
T Consensus 20 P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~pivlM~Y~N~i~ 99 (258)
T pfam00290 20 PDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSVPIVLMTYYNPVL 99 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHH
T ss_conf 99899999999999769999997899888766589999999999986996999999999855128998889985208898
Q ss_pred -----HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----00011232210111223322211
Q gi|254780893|r 85 -----EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 85 -----~~~~~al~~GAddyi~KP~~~~e 107 (236)
...-++-++|+|+.|.--.-++|
T Consensus 100 ~~G~e~F~~~~~~~GvdGvIipDLP~eE 127 (258)
T pfam00290 100 NYGIERFYAQAAEAGVDGLIIPDLPPEE 127 (258)
T ss_pred HCCHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 7299999999997599778707999889
No 228
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=68.13 E-value=10 Score=18.72 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=47.0
Q ss_pred EEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 599986998----9999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDDK----ALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~----~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
|+-++.+|. .....+...+++.|.+|.. ..+....+..+....||+|++- ..+.++..+++++|+.+
T Consensus 136 ~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Dfs~~l~kik~a~pD~v~~~--~~~~~~~~~~kq~~~~G 213 (359)
T TIGR03407 136 RFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNT--LNGDSNVAFFKQLKNAG 213 (359)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHC
T ss_conf 7999945873058999999999997599737788257987558999999997699999993--74620579999999828
Q ss_pred CC
Q ss_conf 23
Q gi|254780893|r 71 IS 72 (236)
Q Consensus 71 ~~ 72 (236)
..
T Consensus 214 ~~ 215 (359)
T TIGR03407 214 IT 215 (359)
T ss_pred CC
T ss_conf 99
No 229
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=68.07 E-value=10 Score=18.72 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=46.7
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC---CCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 99986998999999999998898999999989999999857994788311498---743343111222232233100133
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT---DIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp---~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
|++||-......++...|+..|+++....+-.. .+.+....||.+|+-=+.. +.+...+.+.+. ...+||+-+.
T Consensus 1 I~iiD~g~~~~~si~~~l~~~G~~~~vv~~~~~-~~~~~~~~~dgvils~GP~~~~~~~~~~~~~~i~--~~~~PilGIC 77 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTP-LEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEIF--ELGVPVLGIC 77 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHH--HCCCCEEEEH
T ss_conf 799999863899999999977994999969999-8999734989899899999855579833309998--4799999985
No 230
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.87 E-value=4.9 Score=20.64 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=50.9
Q ss_pred HHHHHHHHCCC-EEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC--CCCHHCCCCC
Q ss_conf 99999998898-99999998999999985-79947883114987433431112222322331001333--2100000112
Q gi|254780893|r 15 SIELMLKSENF-NVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG--MSSIEDKVRG 90 (236)
Q Consensus 15 ~l~~~L~~~g~-~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~--~~~~~~~~~a 90 (236)
.+-..|++.+. -|....+.++++..... -.--+=++.+.|-.-++++.++.+++.....|=+.+.+ --+.++.-++
T Consensus 5 ~il~~l~~~~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~tp~a~~~i~~l~~~~~~~p~~~iGaGTV~~~e~~~~a 84 (209)
T PRK06552 5 EILTKLKANGLVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVERYKDDPEVLIGAGTVLDAVTARQA 84 (209)
T ss_pred HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf 99999997997999972899999999999998799889996789759999999999817799818988727489999999
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 32210111223322211111
Q gi|254780893|r 91 LQSGADDYISKPFNKEELVA 110 (236)
Q Consensus 91 l~~GAddyi~KP~~~~eL~a 110 (236)
.++||+ |+.-|.-..+++.
T Consensus 85 ~~aGA~-FiVSP~~~~~v~~ 103 (209)
T PRK06552 85 ILAGAQ-FIVSPSFNRETAK 103 (209)
T ss_pred HHCCCC-EEECCCCCHHHHH
T ss_conf 985998-8976999899999
No 231
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=67.70 E-value=10 Score=18.67 Aligned_cols=79 Identities=19% Similarity=0.079 Sum_probs=53.1
Q ss_pred EEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 599986998----9999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDDK----ALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~----~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
||-++-+|. .....+...+++.|.++.. ..|....+..+....||+|++-. ...++..+++.+|+..
T Consensus 138 kvavl~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~--~~~~~~~~~~q~~~~G 215 (336)
T cd06326 138 RIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVG--AYKAAAAFIRALRKAG 215 (336)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHCC
T ss_conf 59999358758899999999999977993799998689987779999999847979999927--8279999999999769
Q ss_pred CCCCEECCCCCC
Q ss_conf 233100133321
Q gi|254780893|r 71 ISTPVCILSGMS 82 (236)
Q Consensus 71 ~~~pII~ls~~~ 82 (236)
...|++..+...
T Consensus 216 ~~~~~~~~~~~~ 227 (336)
T cd06326 216 GGAQFYNLSFVG 227 (336)
T ss_pred CCCEEEEECCCC
T ss_conf 997599856777
No 232
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=67.44 E-value=10 Score=18.64 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 99999999999889899999998------99999998579947883114987433431112222322331001333
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
.+...+...+++.||.+..+.+. .+.++.+....+|-+|+- +....-+..+.+++ ..+|++++..
T Consensus 16 ~~~~gie~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIl~---~~~~~~~~~~~l~~--~~iPvV~i~~ 86 (259)
T cd01542 16 RTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILL---ATTITDEHREAIKK--LNVPVVVVGQ 86 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHHHH--CCCCEEEECC
T ss_conf 99999999999869989999789998999999999995699989993---77777599999996--6999999598
No 233
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=67.25 E-value=11 Score=18.62 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=28.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 95999869989999999999988989999999
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL 32 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~ 32 (236)
|||||..----+...|...|-+.|++|...++
T Consensus 1 MkvLVTGg~GFIGs~l~~~Ll~~g~~V~~~d~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 91999898767999999999978498999988
No 234
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator; InterPro: IPR014290 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents proteins belonging to the Rtf2 family of transcriptional regulators and are found, typically, as the first gene of the SUF operon. They are found only in a subset of the genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role..
Probab=67.20 E-value=8.5 Score=19.19 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC--EEEECCCCCC
Q ss_conf 46411688999871899737899999987188777775303667899988511067888438888782--0264568875
Q gi|254780893|r 150 LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR--GYVLRENAKD 227 (236)
Q Consensus 150 LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~--GY~l~~~~~~ 227 (236)
||-=-.-+|..|+++..+++|-.+|++.- ... +- -++++=|.|.. ..+..+.||+ ||.|..++.+
T Consensus 7 L~DYA~~vl~~lA~~~~~~ySAA~lA~~t-----gL~---~p-TvsK~Lk~L~~----A~lV~S~RGv~GGY~La~~~~~ 73 (130)
T TIGR02944 7 LTDYATVVLTVLAQADEQTYSAAELAEQT-----GLE---AP-TVSKILKALSE----AGLVTSKRGVEGGYTLARAPED 73 (130)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHC-----CCC---CC-HHHHHHHHHHC----CCCCCCCCCCCHHHHHHCCCCC
T ss_conf 87679999999852899700688878645-----988---60-47899887642----8753243464300462005455
Q ss_pred C
Q ss_conf 4
Q gi|254780893|r 228 E 228 (236)
Q Consensus 228 e 228 (236)
=
T Consensus 74 i 74 (130)
T TIGR02944 74 I 74 (130)
T ss_pred C
T ss_conf 4
No 235
>PRK13113 consensus
Probab=66.99 E-value=5.1 Score=20.54 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=47.7
Q ss_pred EECCHHHHHHHH---HHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 999989999999---8579947883114987--433--------------------431112222322331001333210
Q gi|254780893|r 29 VTDLGEDGIELC---KFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 29 ~a~~~~eal~~~---~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
...+.+..++.+ ...-.|++=+.+..++ .|| +++++.+|+..+.+|++++|.++.
T Consensus 26 G~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~~PivlM~Y~N~ 105 (263)
T PRK13113 26 GDPDYDTSLEVMRGLPAAGVDIIELGMPFTDPMADGPTIQLAGQRALEGGMTLDRTLDMVRAFRKEDDTTPIVMMGYYNP 105 (263)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHH
T ss_conf 28997999999999997699999978988887765899999999999779838899999997512389988899831368
Q ss_pred HH------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00------001123221011122332221
Q gi|254780893|r 84 IE------DKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 84 ~~------~~~~al~~GAddyi~KP~~~~ 106 (236)
.. ..-++-++|+|+.|.--..++
T Consensus 106 i~~~G~e~F~~~~~~~GvdGvIipDLP~e 134 (263)
T PRK13113 106 IYSRGVDRFLAEAKEAGIDGLIVVDLPPE 134 (263)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 98856999999987779436971799978
No 236
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=66.93 E-value=11 Score=18.58 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999999999889899999998------999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+++.||++..+.+. .+.++.+....+|.+|+-- ....-+.+..+. ...+|++++...
T Consensus 16 ~~~~gi~~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIi~~---~~~~~~~~~~l~--~~~iPvV~id~~ 87 (265)
T cd06299 16 SLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVP---HEQSAEQLEDLL--KRGIPVVFVDRE 87 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE---CCCCHHHHHHHH--HCCCCEEEECCC
T ss_conf 999999999998599899997899989999999999947999999980---679989999999--669989983786
No 237
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=66.90 E-value=1.6 Score=23.63 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 99899999998579947883114987-433431112222322331001333210000011232210111
Q gi|254780893|r 31 DLGEDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDY 98 (236)
Q Consensus 31 ~~~~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddy 98 (236)
.+..+-...+-..-.|++++|..-.. ..-++.++.||...|.+|||.-- -.+.+......++|||..
T Consensus 227 ~~~~eRa~~Lv~AGvDvivIDtAhGhs~~vi~~ik~ik~~~~~v~viaGN-v~T~~~a~~L~~aGaD~v 294 (486)
T PRK05567 227 ADNEERAEALVKAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGN-VATAEAARALIEAGADAV 294 (486)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE-ECHHHHHHHHHHCCCCEE
T ss_conf 01899999999769988995044521577899999997407877368751-201999999997298769
No 238
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=66.89 E-value=2.8 Score=22.07 Aligned_cols=46 Identities=30% Similarity=0.333 Sum_probs=17.3
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHH-CCCCEEE
Q ss_conf 99869989999999999988989999-------9998999999985-7994788
Q gi|254780893|r 4 LLIEDDKALAHSIELMLKSENFNVYV-------TDLGEDGIELCKF-YEFDAII 49 (236)
Q Consensus 4 Livedd~~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~-~~~DlvI 49 (236)
.+..-|...-..+...+++.|..|+. .++.+.+++++.+ ..||-+|
T Consensus 23 fll~g~I~~l~~~v~~~k~~gK~vfVHiDli~GL~~d~~av~fL~~~~~~dGII 76 (174)
T pfam04309 23 FLLTGHILNLKEIVKLLKQRGKTVFVHVDLVEGLSNDEEAIEFIKEVIEPDGII 76 (174)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 995580878999999999879989998521677789889999999824899999
No 239
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=66.64 E-value=4.2 Score=21.05 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 9999998579947883114987433431112222322331001333
Q gi|254780893|r 35 DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 35 eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
+..+.+....||++|+ +.-|+.| +.+++.+|+..+.+|++..-+
T Consensus 76 ~~~~~i~~~~Pd~vi~-ID~pgFn-lrlak~lkk~~~~ipvi~yv~ 119 (382)
T PRK00025 76 ELKRLLLAEPPDVFIL-IDAPDFN-LRLAKKLKKALPGIPIIHYVS 119 (382)
T ss_pred HHHHHHHHCCCCEEEE-ECCCHHH-HHHHHHHHHHCCCCCEEEEEC
T ss_conf 9999998649999999-7783065-999999997169998899947
No 240
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=66.51 E-value=3.1 Score=21.81 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=33.2
Q ss_pred HHHHCCC-EEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCC
Q ss_conf 9998898-99999998999999985-799478831149874334311122223223310013332100000112322101
Q gi|254780893|r 19 MLKSENF-NVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGAD 96 (236)
Q Consensus 19 ~L~~~g~-~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAd 96 (236)
.|++.+. -|....+.+++...... ..--+=++.+.+-.-++++.++.+++..+++- |-...--+.++.-++.++||+
T Consensus 4 ~L~~~~iipV~r~~~~~~a~~~~~al~~~Gi~~iEiTl~t~~a~~~I~~l~~~~p~~~-iGaGTV~~~e~~~~a~~aGA~ 82 (196)
T pfam01081 4 ILREAKIVPVIVIKDKEDALPLAEALAAGGIRVLEVTLRTPCALDAIRLLRKNRPDAL-VGAGTVLNAQQLAEAAEAGAQ 82 (196)
T ss_pred HHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHHHCCCC
T ss_conf 8966997999977999999999999998799889994798279999999996499967-999837689999999974999
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 1122332221111
Q gi|254780893|r 97 DYISKPFNKEELV 109 (236)
Q Consensus 97 dyi~KP~~~~eL~ 109 (236)
|+.-|.-..+++
T Consensus 83 -FivSP~~~~~v~ 94 (196)
T pfam01081 83 -FVVSPGLTADLL 94 (196)
T ss_pred -EEECCCCHHHHH
T ss_conf -999787639999
No 241
>KOG2550 consensus
Probab=66.46 E-value=2.7 Score=22.21 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHCCCCEEEEC
Q ss_conf 98999999985799478831
Q gi|254780893|r 32 LGEDGIELCKFYEFDAIILD 51 (236)
Q Consensus 32 ~~~eal~~~~~~~~DlvIlD 51 (236)
+.++.++++.+.-.|+||||
T Consensus 251 ~dK~rl~ll~~aGvdvviLD 270 (503)
T KOG2550 251 DDKERLDLLVQAGVDVVILD 270 (503)
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 01677888663488689996
No 242
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=65.77 E-value=7.9 Score=19.39 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=50.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE---EE-EECCHHHHHH----HHHHCCCCEEEECCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 999869989999999999988989---99-9999899999----99857994788311498743--34311122223223
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFN---VY-VTDLGEDGIE----LCKFYEFDAIILDLGLTDIP--GFEVLRALRVAKIS 72 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~---v~-~a~~~~eal~----~~~~~~~DlvIlD~~lp~~~--G~~~~~~ir~~~~~ 72 (236)
++.+||....+..|. ..|.+ +. ...|.++... .+..+.-=.+|-|.+||..+ |+.+++..++.+
T Consensus 33 ~iaaEDTR~t~~LL~----~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~g-- 106 (275)
T COG0313 33 VIAAEDTRVTRKLLS----HLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAG-- 106 (275)
T ss_pred EEEEECCHHHHHHHH----HHCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCC--
T ss_conf 999951477999999----73999834503478677879999999866984899805899766685099999999869--
Q ss_pred CCEECCCCCCCHH
Q ss_conf 3100133321000
Q gi|254780893|r 73 TPVCILSGMSSIE 85 (236)
Q Consensus 73 ~pII~ls~~~~~~ 85 (236)
++|+.+.+.+..-
T Consensus 107 i~V~~lPG~sA~~ 119 (275)
T COG0313 107 IRVVPLPGPSALI 119 (275)
T ss_pred CCEEECCCCCHHH
T ss_conf 9189668834999
No 243
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=65.62 E-value=11 Score=18.42 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999999999889899999998------999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+.+.||++..+.+. .+.++.+....+|.+|+--..+ .-+..+.++ ...+|++++...
T Consensus 16 ~i~~gi~~~a~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDgiIl~~~~~---~~~~~~~~~--~~~iPvV~i~~~ 87 (267)
T cd06283 16 LVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGN---NKELYQRLA--KNGKPVVLVDRK 87 (267)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC---CHHHHHHHH--HCCCCEEEECCC
T ss_conf 999999999998699899997899989999999999966999999858779---989999999--769989996885
No 244
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=65.61 E-value=11 Score=18.42 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=67.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCCCCCCCCCEECCCCC
Q ss_conf 9998699899999999999889899999998999999985799478831149874334-311122223223310013332
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF-EVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~-~~~~~ir~~~~~~pII~ls~~ 81 (236)
|||-.--.-+...+.+.|.+.|-.|+.+.--++.++-.....|++.=.=+...+.++. +++..+....|++-|++=-+
T Consensus 8 iLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvliNNA- 86 (245)
T COG3967 8 ILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLINNA- 86 (245)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCHHEEEECCCCHHHHHHHHHHHHHHCCCHHEEEECC-
T ss_conf 9993796436599999999838979996574999999986094131565132035669999999986298611343030-
Q ss_pred CCHHCCCCCCCCCCCCCC
Q ss_conf 100000112322101112
Q gi|254780893|r 82 SSIEDKVRGLQSGADDYI 99 (236)
Q Consensus 82 ~~~~~~~~al~~GAddyi 99 (236)
..+..+. |. |++|++
T Consensus 87 -GIqr~~d-lt-~~e~~~ 101 (245)
T COG3967 87 -GIQRNED-LT-GAEDLL 101 (245)
T ss_pred -CCCCHHH-CC-CCCCHH
T ss_conf -0032011-15-873125
No 245
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=65.42 E-value=11 Score=18.46 Aligned_cols=60 Identities=23% Similarity=0.495 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEECCCCCCCC-C------------CCCCCCCCCCCCCCCE
Q ss_conf 89999999999988989999-99989999999857994788311498743-3------------4311122223223310
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYV-TDLGEDGIELCKFYEFDAIILDLGLTDIP-G------------FEVLRALRVAKISTPV 75 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~-a~~~~eal~~~~~~~~DlvIlD~~lp~~~-G------------~~~~~~ir~~~~~~pI 75 (236)
..++..+...|..+ |.+.. ..-| ||+||+.++.-|.+ + ..++..+|+..|..+|
T Consensus 32 ~sya~l~a~~l~A~-y~~~a~SG~G-----------Pd~vvi~lGtND~~~~~~~~~~~f~~~y~~~i~~ir~~~p~a~i 99 (169)
T cd01831 32 LSYAALLARALNAE-YSIIAYSGIG-----------PDLVVINLGTNDFSTGNNPPGEDFTNAYVEFIEELRKRYPDAPI 99 (169)
T ss_pred HHHHHHHHHHHCCC-CEEEEECCCC-----------CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 52999999985998-4699841689-----------98899977766788889978899999999999999988899879
Q ss_pred ECCCCC
Q ss_conf 013332
Q gi|254780893|r 76 CILSGM 81 (236)
Q Consensus 76 I~ls~~ 81 (236)
+.++..
T Consensus 100 ~~~~~~ 105 (169)
T cd01831 100 VLMLGP 105 (169)
T ss_pred EEEECC
T ss_conf 998567
No 246
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=65.25 E-value=11 Score=18.48 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 222464116889998718997378999999871887777753036678999885
Q gi|254780893|r 147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200 (236)
Q Consensus 147 ~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkK 200 (236)
+..||..+|.+|.+|..++| ++-.+|.+.+ ..+..++-..|++|-++
T Consensus 5 ~~glt~~q~~vL~~l~~~~~--~t~~~la~~l-----~~~~~~vs~~v~~L~~~ 51 (101)
T smart00347 5 PLGLTPTQFLVLRILYEEGP--LSVSELAKRL-----GVSPSTVTRVLDRLEKK 51 (101)
T ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHCC
T ss_conf 13949999999999997699--7999999998-----96887999999999458
No 247
>PRK00811 spermidine synthase; Provisional
Probab=64.98 E-value=12 Score=18.35 Aligned_cols=57 Identities=23% Similarity=0.197 Sum_probs=39.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHC--C-C---EEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 5999869989999999999988--9-8---999-9999899999998579947883114987433
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSE--N-F---NVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~--g-~---~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G 59 (236)
+|-+||=|..+-+..+.+|... | + +|. ...+|...++.. .+.||+||+|..=|...+
T Consensus 104 ~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~-~~~yDvII~D~tDP~gpa 167 (283)
T PRK00811 104 KITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRET-ENSFDVIIVDSTDPVGPA 167 (283)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHC-CCCCCEEEEECCCCCCHH
T ss_conf 7999946899999999983886313302971599827899999845-235548998089988644
No 248
>PRK03612 spermidine synthase; Provisional
Probab=64.80 E-value=12 Score=18.33 Aligned_cols=121 Identities=21% Similarity=0.156 Sum_probs=66.6
Q ss_pred EEEEECCCHHHHHHHHHH--HHHCCC------EEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCC------CCCCCC
Q ss_conf 599986998999999999--998898------999-99998999999985799478831149874334------311122
Q gi|254780893|r 2 RILLIEDDKALAHSIELM--LKSENF------NVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGF------EVLRAL 66 (236)
Q Consensus 2 kILivedd~~~~~~l~~~--L~~~g~------~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~------~~~~~i 66 (236)
+|-+||=|+.+-+.-+.. |.+.+. +|. ...|+-..++.. .+.||+||+|..=|...+. |+-+.+
T Consensus 319 ~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~-~~~yDvIi~D~pdP~~~~~~~LYs~eFY~~~ 397 (516)
T PRK03612 319 QVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-PETFDAIIVDLPDPSNPALGKLYSVEFYRLL 397 (516)
T ss_pred EEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 378995188999999857214444123234996489853789999868-8878889981899799522467539999999
Q ss_pred CCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 223223310013332100000112322101112233222111112222222222222222222222222222
Q gi|254780893|r 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDA 138 (236)
Q Consensus 67 r~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~d~~~ 138 (236)
|+.-..-.+++.-+-+. ... |-..-...+.+++.--...+....+.+||+|-|....
T Consensus 398 ~~~L~~~G~~v~qs~Sp-~~~--------------~~~f~~i~~T~~~~~~~~~~y~~~vpsfg~WGf~la~ 454 (516)
T PRK03612 398 KRRLAPDGLLVVQSTSP-YFA--------------PKAFWSIEATLEAAGFATTPYHVNVPSFGEWGFVLAA 454 (516)
T ss_pred HHHCCCCCEEEEECCCC-CCC--------------CHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHEEC
T ss_conf 98449995899936897-552--------------2034689999998388041324558886642441466
No 249
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=64.31 E-value=12 Score=18.27 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 999999999889899999-------99899999998579947883114987433431112222322331001333
Q gi|254780893|r 13 AHSIELMLKSENFNVYVT-------DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 13 ~~~l~~~L~~~g~~v~~a-------~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
...+...+++.|.+|... .+....+..+....||+|++-. .+.++..+++..++.....+++.++.
T Consensus 161 ~~~~~~~~~~~g~~v~~~~~~~~~~~D~s~~v~~l~~~~pd~v~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~ 233 (344)
T cd06345 161 DAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGF--SGNVGVLFTQQWAEQKVPIPTIGISV 233 (344)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 99999998753975999996589764549999999865999999906--74369999999997599988699974
No 250
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=64.25 E-value=11 Score=18.51 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=21.4
Q ss_pred EEEEECCC---------HHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 59998699---------8999999999998898999999
Q gi|254780893|r 2 RILLIEDD---------KALAHSIELMLKSENFNVYVTD 31 (236)
Q Consensus 2 kILivedd---------~~~~~~l~~~L~~~g~~v~~a~ 31 (236)
|||+|-+. ......|...|.+.||+|....
T Consensus 1 rIl~vt~~~pP~~~GG~e~~~~~la~~L~~~Gh~V~v~~ 39 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLT 39 (359)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999994864899976499999999999997799899995
No 251
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=64.17 E-value=12 Score=18.26 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=42.1
Q ss_pred EEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 599986998----9999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDDK----ALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~----~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
||-++.+|. .....+...+++.|.+|.. ..+....+..+....||+|++- ..+.++..+++++|+.+
T Consensus 135 ~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Dfs~~l~ki~~a~pD~v~~~--~~g~~~~~~~~q~~~~G 212 (348)
T cd06355 135 RFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVST--VNGDSNVAFFKQLKAAG 212 (348)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHC
T ss_conf 7999916851348999999999998599899998137997567999999997699999994--76512489999999817
Q ss_pred CC
Q ss_conf 23
Q gi|254780893|r 71 IS 72 (236)
Q Consensus 71 ~~ 72 (236)
..
T Consensus 213 ~~ 214 (348)
T cd06355 213 IT 214 (348)
T ss_pred CC
T ss_conf 87
No 252
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.08 E-value=12 Score=18.24 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECC------HHHHHHHHHHCCCCEEEECCCCCCCC--CCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 9999999999988989999999------89999999857994788311498743--343111222232233100133321
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDL------GEDGIELCKFYEFDAIILDLGLTDIP--GFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~------~~eal~~~~~~~~DlvIlD~~lp~~~--G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
.+...+...+.+.||.+..+.+ ..+.++.+....+|-+|+=-..+... -.+.++.++ ...+|++++....
T Consensus 16 ~l~~gie~~~~~~Gy~~li~~s~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~~--~~~iPvV~~d~~~ 93 (273)
T cd06292 16 AFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLA--ERGLPVVLVNGRA 93 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHH--HCCCCEEEEECCC
T ss_conf 99999999999869989999789997999999999996499849992476663315789999999--6699889993357
No 253
>PRK08655 prephenate dehydrogenase; Provisional
Probab=63.87 E-value=12 Score=18.22 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=28.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9599986998999999999998898999999
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTD 31 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~ 31 (236)
|||.||.-.-.+..++..+|+..||+|...+
T Consensus 1 mkI~IIGG~G~MG~~Fa~~f~~sGyeV~I~g 31 (441)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKDKGYEVIVWG 31 (441)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9799994798177999999986798899981
No 254
>PRK13114 consensus
Probab=63.74 E-value=5.4 Score=20.37 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=47.0
Q ss_pred EECCHHHHHHHH---HHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 999989999999---8579947883114987--433--------------------431112222322331001333210
Q gi|254780893|r 29 VTDLGEDGIELC---KFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 29 ~a~~~~eal~~~---~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
...|.+..++.+ ...-.|++=+.+..++ .|| +++++.+|+.++++|++++|.++.
T Consensus 22 G~P~~~~t~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~rAL~~G~~l~~~f~~v~~~r~~~~~~PivlM~Y~N~ 101 (266)
T PRK13114 22 GDPTPGDTAANLDALVAGGADVIELGMPFTDPMADGPAIQAANLRSLAAGTTTADIFRIAAEFRQRHPEVPLVLMGYANP 101 (266)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHH
T ss_conf 18998999999999997699999979998886776899999999999869979999999999874189988799863019
Q ss_pred HH------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00------001123221011122332221
Q gi|254780893|r 84 IE------DKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 84 ~~------~~~~al~~GAddyi~KP~~~~ 106 (236)
.. ..-++-++|+|..|.--..++
T Consensus 102 i~~~G~~~F~~~~~~aGvdG~IipDLP~e 130 (266)
T PRK13114 102 MVRRGPDWFAAECKKAGVDGVICVDIPPE 130 (266)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 99864999999999749977984589978
No 255
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=63.63 E-value=12 Score=18.19 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCEECCCCC
Q ss_conf 899999999999889899999998------99999998579947883114987433-4311122223223310013332
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPG-FEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G-~~~~~~ir~~~~~~pII~ls~~ 81 (236)
..+...+...+++.||++..+.+. .+.++.+....+|.+|+... +.+. ...+++++ ...+|++++-..
T Consensus 15 ~~~~~gi~~~a~~~Gy~~~i~~s~~~~~~e~~~i~~l~~~~vdgiI~~p~--~~~~~~~~i~~~~--~~~iPvV~id~~ 89 (268)
T cd06323 15 VTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPT--DSDAVVPAVKAAN--EAGIPVFTIDRE 89 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCHHHHHHHH--HCCCCEEEECCC
T ss_conf 99999999999975998999819999999999999999649998997565--4212469999999--769968996366
No 256
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=63.58 E-value=12 Score=18.19 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=56.0
Q ss_pred HHCCCEEEEECCHH--------HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCC
Q ss_conf 98898999999989--------9999998579947883114987433431112222322331001333210000011232
Q gi|254780893|r 21 KSENFNVYVTDLGE--------DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92 (236)
Q Consensus 21 ~~~g~~v~~a~~~~--------eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~ 92 (236)
.+.+..|..+++|. .....+.+..||++|.=-.=|...|-.-+|++-+ ...+|.|++|.-...-.. .+++
T Consensus 28 dRedI~vrv~gsGaKm~pe~~~~v~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~-~~~iP~IvI~D~p~~k~k-d~l~ 105 (276)
T PRK00994 28 DREDIDVRVVGSGAKMGPEEVERVVKKMKEWKPDFIIVISPNPAAPGPTKAREILS-AAGIPCIVIGDAPGKKKK-DAME 105 (276)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHH-HHHH
T ss_conf 34685499952667779789999999988408998999789988999567999997-569988997488533148-8998
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 2101112233222
Q gi|254780893|r 93 SGADDYISKPFNK 105 (236)
Q Consensus 93 ~GAddyi~KP~~~ 105 (236)
...-+||.-|.|+
T Consensus 106 ~~g~GYIivk~D~ 118 (276)
T PRK00994 106 EQGFGYIIVKADP 118 (276)
T ss_pred HCCCCEEEEECCC
T ss_conf 6498479983675
No 257
>pfam02684 LpxB Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyse the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <= UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyse the fist disaccharide step in the synthesis of lipid-A-disaccharide.
Probab=63.56 E-value=5 Score=20.56 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC---CCHHCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 999999985799478831149874334311122223223310013332---1000001123221011-12233222111
Q gi|254780893|r 34 EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM---SSIEDKVRGLQSGADD-YISKPFNKEEL 108 (236)
Q Consensus 34 ~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~---~~~~~~~~al~~GAdd-yi~KP~~~~eL 108 (236)
.+..+.+....||++|+ +.-|+.| +.+++.+|+.++.+|++..-+. .=...+++-+..-.|- +..=||+++-+
T Consensus 72 ~~~~~~i~~~~PD~vIl-ID~pgFN-lrlak~lkk~g~~ipvi~yV~PqvWAWr~~R~k~i~~~~D~ll~IfPFE~~~y 148 (373)
T pfam02684 72 QKVVKNILKKKPDTLIL-IDAPDFN-LRLAKKLRKLGPKLKIIHYVSPSVWAWRPKRAKIIAKYTDLLLAILPFEKGFF 148 (373)
T ss_pred HHHHHHHHHCCCCEEEE-ECCCCHH-HHHHHHHHHCCCCCCEEEEECCCEEEECHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99999874269988999-7176155-99999999719998789996884221271589999999987312898878999
No 258
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=63.49 E-value=12 Score=18.18 Aligned_cols=55 Identities=20% Similarity=0.142 Sum_probs=34.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EEEEC--CHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 5999869989999999999988989--99999--9899999998579947883114987
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFN--VYVTD--LGEDGIELCKFYEFDAIILDLGLTD 56 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~--v~~a~--~~~eal~~~~~~~~DlvIlD~~lp~ 56 (236)
||.-||-|+.....-+..|++.|.. |.... +..+.+.......||+|++|..-+.
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~~ 144 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKAD 144 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 69997079899999999999759765289883574799997334788568998378435
No 259
>pfam09182 PuR_N Bacterial purine repressor, N-terminal. The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA.
Probab=63.34 E-value=13 Score=18.16 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCE
Q ss_conf 116889998718997378999999871887777753036678999885110678884388887820
Q gi|254780893|r 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218 (236)
Q Consensus 153 ~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~G 218 (236)
+=..+-++|++||++.+|=..+.+..---.+..++ -+.=+++-++...- ..|+|+.|.+
T Consensus 5 Rlv~mt~~Ll~~P~~li~L~~Fae~~~~AKSsISE-----Dl~iik~~~~~~g~--G~leTi~Gaa 63 (70)
T pfam09182 5 RLVAMTKYLLENPNKLIPLTYFAERFGSAKSSISE-----DLVIIKETFEKFGL--GKLETIPGAA 63 (70)
T ss_pred HHHHHHHHHHHCCCCEECHHHHHHHHCCCCCHHHH-----HHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 89999999982998557499999986601020375-----79999999987398--6299845877
No 260
>PRK13144 consensus
Probab=63.34 E-value=13 Score=18.16 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=42.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 9599986998999999999998898999999989999999857994788311498743343
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~ 61 (236)
|||-|||=..---.++..+|+..|+++....++.+ ...+|.+|+ |+.-.+.
T Consensus 1 mkI~IiDyg~GNi~Sv~~al~~~g~~~~i~~~~~~------i~~~d~lIl----PGVGsf~ 51 (190)
T PRK13144 1 VRVGVVDYTVGNIGSVLAALKRAGAEPVVVKEPEE------ANRVDALVL----PGVGTYE 51 (190)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHH------HHHCCEEEE----CCCCCHH
T ss_conf 98999927936899999999984998699789999------954897897----4888599
No 261
>PRK07413 hypothetical protein; Validated
Probab=63.26 E-value=4.8 Score=20.66 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCCEEEEC-C----CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCC
Q ss_conf 999999985799478831-1----4987433431112222322331001333210000011
Q gi|254780893|r 34 EDGIELCKFYEFDAIILD-L----GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVR 89 (236)
Q Consensus 34 ~eal~~~~~~~~DlvIlD-~----~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~ 89 (236)
+.|.+.+....||+|||| + +..-++--+++..|+.. |..-=+++|+++.-+..++
T Consensus 115 e~Ak~~i~sg~ydlVVLDEIn~Al~~Gll~~deVl~~L~~R-P~~~eVVlTGR~AP~eLIe 174 (382)
T PRK07413 115 DIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVKTLKSR-PEGLEIIITGRAAPQSLLD 174 (382)
T ss_pred HHHHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCC-CCCCEEEEECCCCCHHHHH
T ss_conf 99999984899898997216678457980599999999709-9998899959999999998
No 262
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=63.22 E-value=13 Score=18.15 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++.+..++.+-.-+ | .|..+|.+.+ ..+.+||.++++|-|++|...
T Consensus 131 ~L~~~~R~vi~l~~~e-~--~s~~EIA~~l-----gis~~tV~~~l~RAr~~Lr~~ 178 (189)
T PRK12515 131 KLSPAHREIIDLVYYH-E--KSVEEVGEIV-----GIPESTVKTRMFYARKKLAEL 178 (189)
T ss_pred CCCHHHHHHHHHHHHC-C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 5999999999999984-9--9999999998-----929999999999999999999
No 263
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=63.04 E-value=13 Score=18.13 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=31.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHH----CCCCEEEECCC
Q ss_conf 5999869989999999999988989--99-99998999999985----79947883114
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFN--VY-VTDLGEDGIELCKF----YEFDAIILDLG 53 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~--v~-~a~~~~eal~~~~~----~~~DlvIlD~~ 53 (236)
+|.-+|-|+.....-+.+++..|+. +. ...++.+.+..+.. +.||+|++|..
T Consensus 71 ~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~fD~vFiDad 129 (204)
T pfam01596 71 KITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEFDFAFVDAD 129 (204)
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 89999804899999999999779874479998749999999984477776438998188
No 264
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=62.04 E-value=7.5 Score=19.52 Aligned_cols=51 Identities=20% Similarity=-0.012 Sum_probs=23.0
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 28 YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 28 ~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
..+.+.+++.+.+. ..+|.|.||=.-|+ +--+.+..+|+.++. ..+-.|+.
T Consensus 85 VEv~tl~e~~~a~~-~~~d~I~LDn~spe-~l~~~v~~l~~~~~~-v~iEaSGg 135 (169)
T pfam01729 85 VEVENLEELEEALE-AGADIIMLDNFSPE-EVREAVEELDERAGR-VLLEVSGG 135 (169)
T ss_pred EEEEHHHHHHHHHH-CCCCEEEECCCCHH-HHHHHHHHHHHHCCC-EEEEECCC
T ss_conf 99601998999984-69989997799999-999999999975896-79996189
No 265
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=61.95 E-value=13 Score=18.01 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|++.+..++.+..- .| .|..+|.+.+ ..+..||.++++|-|+||..
T Consensus 137 ~L~~~~r~v~~l~~~-~~--~s~~EIA~~l-----gis~~tVk~~l~Ra~~~Lr~ 183 (192)
T PRK09652 137 SLPEELRTAITLREI-EG--LSYEEIAEIM-----GCPIGTVRSRIFRAREALRA 183 (192)
T ss_pred HCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 399999988889997-29--9999999998-----93999999999999999999
No 266
>pfam08281 Sigma70_r4_2 Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Probab=61.51 E-value=13 Score=18.15 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 24641168899987189973789999998718877777530366789998851
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKL 201 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL 201 (236)
.|++++..++.+-.- .| .|.++|.+.+ ..+.+||+++++|-|+||
T Consensus 10 ~Lp~~~r~~~~l~~~-~~--~s~~eIA~~l-----g~s~~tVk~~l~RA~~~L 54 (54)
T pfam08281 10 ELPPRQREVFLLRYL-EG--LSYAEIAELL-----GISEGTVKSRLSRARKKL 54 (54)
T ss_pred CCCHHHHHHHHHHHH-HC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHCC
T ss_conf 599999989687998-78--5999999998-----949999999999999719
No 267
>TIGR00087 surE 5'/3'-nucleotidase SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response . E. coli cells with mutations in the surE gene survive poorly in stationary phase . The structure of SurE homologues have been determined from Thermotoga maritima and the archaea Pyrobaculum aerophilum . The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity.
Probab=61.12 E-value=9.8 Score=18.82 Aligned_cols=29 Identities=38% Similarity=0.508 Sum_probs=19.8
Q ss_pred CEEEEECCCH----HHHHHH---HHHHHHCC--CEEEE
Q ss_conf 9599986998----999999---99999889--89999
Q gi|254780893|r 1 MRILLIEDDK----ALAHSI---ELMLKSEN--FNVYV 29 (236)
Q Consensus 1 mkILivedd~----~~~~~l---~~~L~~~g--~~v~~ 29 (236)
|||||.-||- ..+..| ...|++.| |+|+.
T Consensus 1 m~iL~TNDDGPLsD~~S~gI~Al~~aL~~~g~~~ev~v 38 (326)
T TIGR00087 1 MKILLTNDDGPLSDIFSPGIRALYQALKELGPEYEVTV 38 (326)
T ss_pred CEEEEEECCCCCHHHCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 94789815873012214226999999998479861699
No 268
>PRK10128 putative aldolase; Provisional
Probab=60.99 E-value=6 Score=20.10 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998999999985799478831149874334311122223--2233100133321000001123221011122332221
Q gi|254780893|r 31 DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 31 ~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~--~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~ 106 (236)
.......+.+...-||.+++|......+--++...++.. ....|++=+...+ ...+.++|++||+..+.-=++-.
T Consensus 9 ~~sp~~aEi~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~~~~piVRv~~~~-~~~i~r~LD~Ga~GiivP~V~ta 85 (250)
T PRK10128 9 STTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGS-KALIKQVLDIGAQTLLIPMVDTA 85 (250)
T ss_pred CCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHCCCCEEEECCCCCH
T ss_conf 899799999980898999981778999999999999999865997199858999-88999998378987785474869
No 269
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=60.74 E-value=14 Score=17.88 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=58.1
Q ss_pred HHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECC-----CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCC
Q ss_conf 9999998898999-999989999999857994788311-----4987433431112222322331001333210000011
Q gi|254780893|r 16 IELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDL-----GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVR 89 (236)
Q Consensus 16 l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~-----~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~ 89 (236)
+...++..|..|. .+.+..++..... .-.|.+|..- +....+-+.++..++.. ..+|||.=.+-.+-.....
T Consensus 101 ~~~~~~~~g~~v~~~v~s~~~A~~a~~-~G~D~iV~qG~EAGGH~G~~~~~~Lvp~v~d~-~~iPViAAGGI~dgr~iaa 178 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK-AGADAVIAEGMESGGHIGELTTMALVPQVVDA-VSIPVIAAGGIADGRGMAA 178 (307)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHHHH
T ss_conf 999999859979998189999999996-49999997455446877864378779999850-4686576411336588999
Q ss_pred CCCCCCCCCC
Q ss_conf 2322101112
Q gi|254780893|r 90 GLQSGADDYI 99 (236)
Q Consensus 90 al~~GAddyi 99 (236)
+|.+|||...
T Consensus 179 alalGA~gV~ 188 (307)
T TIGR03151 179 AFALGAEAVQ 188 (307)
T ss_pred HHHCCCCEEE
T ss_conf 9971884787
No 270
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=60.46 E-value=14 Score=17.85 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.6
Q ss_pred CEEEEECCCH------------HHHHHHHHHHHHCCCEEEEE
Q ss_conf 9599986998------------99999999999889899999
Q gi|254780893|r 1 MRILLIEDDK------------ALAHSIELMLKSENFNVYVT 30 (236)
Q Consensus 1 mkILivedd~------------~~~~~l~~~L~~~g~~v~~a 30 (236)
||||+|-+-. .....|...|.+.||+|..+
T Consensus 1 MkI~~v~~~~~p~pP~~~GG~e~~~~~La~~L~~~Gh~V~v~ 42 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLF 42 (335)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 986998884003699998979999999999999769989999
No 271
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=60.34 E-value=14 Score=17.84 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECC------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 9999999999988989999999------89999999857994788311498743343111222232233100133321
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDL------GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~------~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
.+...+...+++.||.+..+.+ -.+.++.+.+..+|-+|+ ++....-+..+.+. ...+|++++....
T Consensus 16 ~l~~gie~~~~~~gy~~li~~s~~~~~~e~~~i~~l~~~~vDGiI~---~~~~~~~~~~~~l~--~~~~PvV~i~~~~ 88 (268)
T cd06298 16 ELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIF---MGGKISEEHREEFK--RSPTPVVLAGSVD 88 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHHHHH--HCCCCEEEECCCC
T ss_conf 9999999999987998999989999899999999999669999998---26779999999999--6699899957757
No 272
>PRK08605 D-lactate dehydrogenase; Validated
Probab=60.33 E-value=14 Score=17.84 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=38.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEC
Q ss_conf 959998699899999999999889899999998999999985799478831
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILD 51 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD 51 (236)
|||++-+=...-...+....++.|++|........--..-....||.+++-
T Consensus 2 ~Ki~~~~~~~~e~~~~~~~~~~~~~ev~~~~~~~~ee~i~~~~~~D~i~v~ 52 (332)
T PRK08605 2 TKIKLMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDNVEEVEGFDGLSLS 52 (332)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEE
T ss_conf 769998276656999999888659079996699998999985799889997
No 273
>LOAD_surE consensus
Probab=60.32 E-value=14 Score=17.83 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=21.2
Q ss_pred CEEEEECCCHHHHH---HHHHHHHHCCCEEEEE
Q ss_conf 95999869989999---9999999889899999
Q gi|254780893|r 1 MRILLIEDDKALAH---SIELMLKSENFNVYVT 30 (236)
Q Consensus 1 mkILivedd~~~~~---~l~~~L~~~g~~v~~a 30 (236)
||||+.-||---+. .|...|.+.|++|..+
T Consensus 1 M~ILlTNDDGi~a~Gl~aL~~~l~~~g~~V~vv 33 (192)
T LOAD_surE 1 MRILVTNDDGIDSPGIRALAEALKEEGAEVTVV 33 (192)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 969998379888888999999998789969998
No 274
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=60.17 E-value=14 Score=17.82 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=58.8
Q ss_pred HHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEC-CCCCCCC-------CCCCCCCCCCCCCCCCEECCCCCCCH
Q ss_conf 999999998898999-99998999999985799478831-1498743-------34311122223223310013332100
Q gi|254780893|r 14 HSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILD-LGLTDIP-------GFEVLRALRVAKISTPVCILSGMSSI 84 (236)
Q Consensus 14 ~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD-~~lp~~~-------G~~~~~~ir~~~~~~pII~ls~~~~~ 84 (236)
..+...++..|..|. .+.+.+++..... .-+|.+|.- ..-.+.- -+.++..++. ...+|||.=.+-.+-
T Consensus 127 ~~~v~~~~~~G~~v~~~v~s~~~A~~a~~-~G~D~iV~qG~eAGGH~G~~~~~~~~~L~~~v~~-~~~iPvIaAGGI~dg 204 (330)
T pfam03060 127 EDVIERLKESGTKVIPTVSSAKEARKAEA-AGADAVVAQGPEAGGHRGTEVGTGTFLLVPTVVD-AVDIPVIAAGGIADG 204 (330)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH-HCCCCEEEECCCCCH
T ss_conf 79999999879989998189999999998-1999899966766777888777307777899998-716977852662899
Q ss_pred HCCCCCCCCCCCCCC
Q ss_conf 000112322101112
Q gi|254780893|r 85 EDKVRGLQSGADDYI 99 (236)
Q Consensus 85 ~~~~~al~~GAddyi 99 (236)
.+...+|.+|||...
T Consensus 205 ~~iaaalalGA~gV~ 219 (330)
T pfam03060 205 RGIAAALALGAEGVQ 219 (330)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999967998999
No 275
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.05 E-value=11 Score=18.48 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 9989999999999988
Q gi|254780893|r 8 DDKALAHSIELMLKSE 23 (236)
Q Consensus 8 dd~~~~~~l~~~L~~~ 23 (236)
++..+-..+..+|+++
T Consensus 6 p~~i~d~~i~~~L~ED 21 (285)
T PRK07428 6 PWLILDPLLQQWLRED 21 (285)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 7788999999999836
No 276
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.93 E-value=11 Score=18.61 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=42.4
Q ss_pred EEEEECCC-----HHHHHHHHHHHHHCCCEEEEECCHHHHHH-----HHHHCCCCEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf 59998699-----89999999999988989999999899999-----9985799478831149874334--311122223
Q gi|254780893|r 2 RILLIEDD-----KALAHSIELMLKSENFNVYVTDLGEDGIE-----LCKFYEFDAIILDLGLTDIPGF--EVLRALRVA 69 (236)
Q Consensus 2 kILivedd-----~~~~~~l~~~L~~~g~~v~~a~~~~eal~-----~~~~~~~DlvIlD~~lp~~~G~--~~~~~ir~~ 69 (236)
|||||-.. ...+..+...|++.|++|....+...... ......+|++|. -+.||- ..++.+.
T Consensus 5 ~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----lGGDGT~L~aar~~~-- 78 (304)
T PRK02645 5 LVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYPVFLASAEELPDLAIV----LGGDGTVLAAARHLA-- 78 (304)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEE----ECCCHHHHHHHHHHC--
T ss_conf 99999858999999999999999998889999844434447776200144668889999----786889999999854--
Q ss_pred CCCCCEECCC
Q ss_conf 2233100133
Q gi|254780893|r 70 KISTPVCILS 79 (236)
Q Consensus 70 ~~~~pII~ls 79 (236)
...+||+-+.
T Consensus 79 ~~~iPilGiN 88 (304)
T PRK02645 79 PHDIPILSFN 88 (304)
T ss_pred CCCCCEEEEE
T ss_conf 2699889982
No 277
>PRK13120 consensus
Probab=59.92 E-value=6.7 Score=19.80 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=48.0
Q ss_pred ECCHHHHHHH---HHHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCCH
Q ss_conf 9998999999---98579947883114987--433--------------------4311122223223310013332100
Q gi|254780893|r 30 TDLGEDGIEL---CKFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSSI 84 (236)
Q Consensus 30 a~~~~eal~~---~~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~~ 84 (236)
..+.+..++. +.+.--|++=+.+.++| .|| +++++++|.....+||++++.++..
T Consensus 31 ~P~~~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~l~~vl~~v~~~r~~~~~~PivlM~Y~Npi 110 (285)
T PRK13120 31 DPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIAQGVGLRRVLELVADFRRDDSVTPVVLMGYANPI 110 (285)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHH
T ss_conf 89989999999999976999999789878745668999999999997699844699999998734898888986105499
Q ss_pred ------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------00011232210111223322211
Q gi|254780893|r 85 ------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 85 ------~~~~~al~~GAddyi~KP~~~~e 107 (236)
...-++-++|+|++|.--..++|
T Consensus 111 ~~yG~e~F~~~~~~aGvdGlIIpDLP~EE 139 (285)
T PRK13120 111 ERMGQRAFAQAAQAAGVDGVLVVDYPPEE 139 (285)
T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 99879999999998398779647999799
No 278
>PRK05693 short chain dehydrogenase; Provisional
Probab=59.87 E-value=15 Score=17.79 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=50.0
Q ss_pred CEE-EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCCCCCCCCCEEC
Q ss_conf 959-998699899999999999889899999998999999985799478831149874334-31112222322331001
Q gi|254780893|r 1 MRI-LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF-EVLRALRVAKISTPVCI 77 (236)
Q Consensus 1 mkI-Livedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~-~~~~~ir~~~~~~pII~ 77 (236)
||| ||..-..-+...+...|.+.|++|..+.--.+.++.+....+..+.+|+.= .+.. ++...+.+....+-+++
T Consensus 1 MKvvlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dvtd--~~~i~~~~~~~~~~~g~iDiLV 77 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVND--GAALARLAEELEAEHQGLDVLI 77 (274)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9989994888589999999999879999999799999999984899189984699--8999999999999729976899
No 279
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=59.31 E-value=14 Score=17.80 Aligned_cols=64 Identities=17% Similarity=0.328 Sum_probs=45.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 5999869989999999999988989-99-9999899999998579947883114987433431112222
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFN-VY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRV 68 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~-v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~ 68 (236)
+|.=||-++.+.+.-...|++.||. |. ...||..++ -...+||.||+-...|+.. -.++.+++.
T Consensus 102 ~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~--pe~APYD~IIVTAaa~~IP-~aLldQLk~ 167 (317)
T PRK13943 102 LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV--PEFSPYDVIFVTVGVDEVP-ETWFTQLKE 167 (317)
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--CCCCCCCEEEEEECCCCCC-HHHHHHCCC
T ss_conf 59999867999999999999779986499979988888--6679977899985276489-999996185
No 280
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=58.95 E-value=13 Score=18.15 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=29.5
Q ss_pred CCCCCCHHHHH------HHHHHCCCCCCCHHHHHHH----H-CCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 22464116889------9987189973789999998----7-1887777753036-678999885110678884388887
Q gi|254780893|r 148 IHLTGKEYQMI------ELLSLRKNTTLTKEMFLNH----L-YDGRDEPEVKIID-VFICKLRKKLSNAAGGKNYIETVW 215 (236)
Q Consensus 148 i~LT~~E~~lL------~~L~~~~g~vvsr~~i~~~----v-w~~~~~~~~~tld-~~I~rLRkKL~~~~~~~~~I~tvr 215 (236)
.-+|.+|..+- +.|+.+-|-|+| +|... + |+... .++... .-+++|-.++.- ......|+|..
T Consensus 256 fgiT~ressidkW~eiQr~lIn~~gvVIT--diirnFN~Y~nwey~~--et~a~~l~pvKklpe~iwy-~s~~frIetlk 330 (354)
T COG1568 256 FGITRRESSIDKWREIQRILINEMGVVIT--DIIRNFNEYVNWEYIE--ETRAWKLAPVKKLPEDIWY-KSYMFRIETLK 330 (354)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCEEHH--HHHHHHHCCCCCCCCH--HHHHHHHCCCCCCCHHHHH-HHHEEEEEEEC
T ss_conf 86641426288999999999874376407--6654453156645331--3555542232448302203-34014543203
Q ss_pred CCE
Q ss_conf 820
Q gi|254780893|r 216 GRG 218 (236)
Q Consensus 216 G~G 218 (236)
|.-
T Consensus 331 ~~K 333 (354)
T COG1568 331 GSK 333 (354)
T ss_pred CCC
T ss_conf 542
No 281
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=58.93 E-value=15 Score=17.69 Aligned_cols=60 Identities=13% Similarity=-0.038 Sum_probs=30.5
Q ss_pred HHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 999988989999-------99989999999857994788311498743343111222232233100133
Q gi|254780893|r 18 LMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 18 ~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
..++..|+++.. ..|....+..+....||+|++-.. ..++..++++.++.+...|++.++
T Consensus 170 ~~~~~~G~~vv~~~~~~~g~~Dfs~~l~kik~~~pD~V~~~~~--~~d~~~~~kQ~~~~G~~~~i~~~~ 236 (357)
T cd06337 170 AALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGFAI--PPDFATFWRQAAQAGFKPKIVTIA 236 (357)
T ss_pred HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 9998659889876401798644899999998559999998787--468999999999759998758861
No 282
>PRK03220 consensus
Probab=58.76 E-value=10 Score=18.64 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=52.8
Q ss_pred EEEEECCHHHHHHHHHHCCCC-EEEECCCCCC---CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 999999989999999857994-7883114987---433431112222322331001333210000011232210111223
Q gi|254780893|r 26 NVYVTDLGEDGIELCKFYEFD-AIILDLGLTD---IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK 101 (236)
Q Consensus 26 ~v~~a~~~~eal~~~~~~~~D-lvIlD~~lp~---~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~K 101 (236)
......++.+....+..+-.| +.|+|+.-.. ..-+++++.|.+ ...+|+=+-.+-.+.++.-..|++|||-.+.-
T Consensus 26 ~~~~~gdP~~~a~~~~~~G~d~lhivDld~a~~g~~~n~~~I~~i~~-~~~~pi~vGGGIrs~e~~~~ll~~GadkVvig 104 (257)
T PRK03220 26 NLRDAGDPVELAAVYDAEGADELTFLDVTASSSGRATMLDVVRRTAE-QVFIPLTVGGGVRTVEDVDSLLRAGADKVSVN 104 (257)
T ss_pred CCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-CCCCCEEEECCCCCHHHHHHHHHCCCCEEECH
T ss_conf 86788899999999998699989999088875676307999999985-06964898478587999999998197508720
No 283
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=58.63 E-value=15 Score=17.66 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999999999889899999998------999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+++.||.+..+.+. .+.++.+....+|-+|+--.. ..-+....+. ...+|++++...
T Consensus 16 ~l~~~ie~~~~~~Gy~~ll~~s~~d~~~e~~~i~~l~~~~vdGiIi~~~~---~~~~~~~~~~--~~~iPvV~idr~ 87 (264)
T cd06274 16 RIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL---PPDDPYYLCQ--KAGLPVVALDRP 87 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC---CCHHHHHHHH--HCCCCEEEEECC
T ss_conf 99999999999869989999389998999999999996699879976788---9879999999--759988998505
No 284
>PRK13919 putative RNA polymerase sigma E protein; Provisional
Probab=58.62 E-value=15 Score=17.66 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++....++.+..- .| .|..+|.+.+ .....||+++++|-|+||...
T Consensus 136 ~L~~~~r~vi~L~~~-~g--~s~~EIA~~L-----~is~~TVk~~l~rA~k~Lr~~ 183 (187)
T PRK13919 136 ALSPEERRVIEVLYY-QG--YTHREAARLL-----GLPLGTLKTWARRALSKLKEV 183 (187)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 499999999999998-59--9999999998-----939999999999999999998
No 285
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=58.57 E-value=15 Score=17.65 Aligned_cols=82 Identities=11% Similarity=-0.002 Sum_probs=49.7
Q ss_pred EEEEECCCHH----HHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 5999869989----999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDDKA----LAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~~----~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
||-++-+|.. ....+...+++.|++|.. ..|....+..+....||+|++-.. ..++..+++..|+.+
T Consensus 142 kva~v~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dft~~l~~i~~a~pD~V~~~~~--~~~~~~~~kqa~~~G 219 (351)
T cd06334 142 KIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGW--GVMNPVAIKEAKRVG 219 (351)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHHCC
T ss_conf 899995686276899999999999769979888806999835899999999769899999377--378999999999759
Q ss_pred CCCCEECCCCCCCHH
Q ss_conf 233100133321000
Q gi|254780893|r 71 ISTPVCILSGMSSIE 85 (236)
Q Consensus 71 ~~~pII~ls~~~~~~ 85 (236)
...|++..+...+..
T Consensus 220 ~~~~~ig~~~~~~~~ 234 (351)
T cd06334 220 LDDKFIGNWWSGDEE 234 (351)
T ss_pred CCCCEEEEECCCCHH
T ss_conf 998579751678899
No 286
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=58.52 E-value=6.3 Score=19.97 Aligned_cols=42 Identities=12% Similarity=-0.120 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 973789999998718877777530366789998851106788843888878
Q gi|254780893|r 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216 (236)
Q Consensus 166 g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG 216 (236)
-.+|==+||..++.-+ .. ..+-.+.-|++| |.....|-|=|+
T Consensus 116 ~DlvVLDEi~~Al~~g--ll---~~eeVi~~L~~r----P~~~evVLTGR~ 157 (178)
T PRK07414 116 YELVVLDELSLAIQFG--LI---PETEVLEFLEKR----PSHVDVILTGPE 157 (178)
T ss_pred CCEEEECHHHHHHHCC--CC---CHHHHHHHHHHC----CCCCEEEEECCC
T ss_conf 8889970368998769--92---599999999818----999889996999
No 287
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1; InterPro: IPR014327 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This group of sigma factors are members of the sigma-70 family and are found primarily in the genus Bacteroides. This appears to have resulted from a lineage-specific expansion as Bacteroides thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037 (Tannerella forsythensis ATCC 43037), Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currently only two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=58.44 E-value=11 Score=18.48 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
+|+++=-.++. |....| .|..||++.+ ..+.+||+.||++=.|+|..
T Consensus 119 ~LPe~~R~iF~-lsr~eg--~s~~EIA~~L-----~iS~~TVe~hi~~ALk~LR~ 165 (167)
T TIGR02985 119 KLPEQCREIFI-LSRFEG--LSNKEIAEEL-----GISVKTVEYHITKALKFLRK 165 (167)
T ss_pred HCCHHHHHHHH-HHHHHC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 56898999999-988617--9867899884-----89888999999999999987
No 288
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=58.32 E-value=4.7 Score=20.75 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=19.1
Q ss_pred HHHHHCCCCEEEECCCCC-CCCCCCCCCCCCCCCCCCCEE
Q ss_conf 999857994788311498-743343111222232233100
Q gi|254780893|r 38 ELCKFYEFDAIILDLGLT-DIPGFEVLRALRVAKISTPVC 76 (236)
Q Consensus 38 ~~~~~~~~DlvIlD~~lp-~~~G~~~~~~ir~~~~~~pII 76 (236)
..+...-.|++++|..-. ...-++.++++|+..|.++||
T Consensus 245 ~~L~~AGvDv~viDsshGhs~~vl~~ik~~k~~Yp~~~ii 284 (476)
T TIGR01302 245 EALVEAGVDVIVIDSSHGHSIYVLDSIKKIKKTYPDLDII 284 (476)
T ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 9999659658998166545378999999998638805799
No 289
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=58.18 E-value=16 Score=17.61 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=38.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 95999869989999999999988989999999899999998579947883
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIIL 50 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIl 50 (236)
|+|.|||=..--..++.+.|+..|+++....+.++. ...|.+|+
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i------~~AD~liL 45 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI------LKADKLIL 45 (204)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHH------HHCCEEEE
T ss_conf 789999728635999999999759806981698897------10888786
No 290
>PRK06953 short chain dehydrogenase; Provisional
Probab=58.05 E-value=16 Score=17.60 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=43.0
Q ss_pred CE-EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 95-99986998999999999998898999999989999999857994788311498
Q gi|254780893|r 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 (236)
Q Consensus 1 mk-ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp 55 (236)
|| +||.--..-+...+...|-+.|++|..+..-.+.++.+.....+.+.+|+.-+
T Consensus 1 MK~~LVTGas~GIG~a~a~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d~ 56 (222)
T PRK06953 1 MKTVLIVGASRGIGLEFVRQYRADGWRVIATARDAAGLAALRALGAEALALDVADP 56 (222)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCH
T ss_conf 99999947572999999999998889999996888889998842151777405899
No 291
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=57.88 E-value=16 Score=17.58 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 899999999999889899999998------9999999857994788311498743343111222232233100133321
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
..+...+...+++.||++..+.+. .+.++.+..+.+|.+|+--. +.+..+.+..++ ...+|++++....
T Consensus 15 ~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~~~~~~vDgiIi~~~--~~~~~~~~~~~~--~~~ipvV~~~~~~ 89 (264)
T cd01537 15 AQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPS--DLTAPTIVKLAR--KAGIPVVLVDRDI 89 (264)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCHHHHHHHH--HCCCCEEEECCCC
T ss_conf 99999999999986998999979999899999999999769999999679--888689999999--7599799985667
No 292
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=57.79 E-value=16 Score=17.57 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 899999999999889899999998------99999998579947883114987433431112222322331001333
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
..+...+...+++.||.+..+.+. .++++.+....+|.+|+-- ....-+..+.++ ...+|++.+..
T Consensus 15 ~~l~~gi~~~~~~~gy~~~i~~s~~d~~~e~~~i~~l~~~~vDGiIi~~---~~~~~~~~~~l~--~~~iPvV~~~~ 86 (268)
T cd01575 15 ADVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTG---LEHTERTRQLLR--AAGIPVVEIMD 86 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHH--HCCCCEEEECC
T ss_conf 9999999999998699999997899989999999999956999999943---779989999999--77996998488
No 293
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=57.52 E-value=16 Score=17.54 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=31.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC-EEEEEC---CHHHHHHHHHHCCCCEEEEC
Q ss_conf 9599986998999999999998898-999999---98999999985799478831
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENF-NVYVTD---LGEDGIELCKFYEFDAIILD 51 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~-~v~~a~---~~~eal~~~~~~~~DlvIlD 51 (236)
||||+.|. +...-...|++.|| .|.... +.++..+.+ ..+|++++-
T Consensus 11 mkiL~~d~---i~~~~~~~L~~~G~~~v~~~~~~l~~eeL~~~i--~~~d~liiR 60 (409)
T PRK11790 11 IKFLLLEG---IHQSAVEVLRAAGYTNIEYHKGALDEEELKEAI--KDAHFIGIR 60 (409)
T ss_pred CEEEEECC---CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH--CCCCEEEEC
T ss_conf 67998078---898999999977997788268999999999985--679899991
No 294
>PRK13131 consensus
Probab=57.00 E-value=8.9 Score=19.07 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCH------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4311122223223310013332100------00011232210111223322211
Q gi|254780893|r 60 FEVLRALRVAKISTPVCILSGMSSI------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 60 ~~~~~~ir~~~~~~pII~ls~~~~~------~~~~~al~~GAddyi~KP~~~~e 107 (236)
+++++++|...+++|++++|..+.. ...-+|-++|+|+.|.--.-++|
T Consensus 75 ~~~~~~~r~~~~~~pivlM~Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE 128 (257)
T PRK13131 75 FQLLKKIRDYNHHIPIGLLAYANLIFSYGVDGFYAQAKECGVDSVLIADMPLIE 128 (257)
T ss_pred HHHHHHHHHCCCCCCEEEECCHHHHHHHCHHHHHHHHHHCCCCCEECCCCCHHH
T ss_conf 999999870499988899927689998579999999986599856558999678
No 295
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=56.67 E-value=16 Score=17.46 Aligned_cols=18 Identities=6% Similarity=0.209 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHHCC
Q ss_conf 303667899988511067
Q gi|254780893|r 188 KIIDVFICKLRKKLSNAA 205 (236)
Q Consensus 188 ~tld~~I~rLRkKL~~~~ 205 (236)
-....++.+-|+|....|
T Consensus 254 ~~~~~F~~~y~~~~g~~P 271 (312)
T cd06346 254 PGLEAFTSAYKAAYGESP 271 (312)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 799999999999878799
No 296
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=56.63 E-value=16 Score=17.45 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=32.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC--CEEE-EECCHHHHHHHHHHC-CCCEEEECCCC
Q ss_conf 59998699899999999999889--8999-999989999999857-99478831149
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSEN--FNVY-VTDLGEDGIELCKFY-EFDAIILDLGL 54 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g--~~v~-~a~~~~eal~~~~~~-~~DlvIlD~~l 54 (236)
++.+||-|......+...++..+ -++. ...+...++...... +||+|.+|-..
T Consensus 68 ~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy 124 (187)
T COG0742 68 RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPY 124 (187)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 699996598999999999998487612599840089998722778851289968997
No 297
>KOG1203 consensus
Probab=56.61 E-value=16 Score=17.45 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=61.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 9599986998999999999998898999-999989999999857994788311498743343111222232233100133
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls 79 (236)
+.||++.---.....+.+.|.+.||.|. .+.+.+.+...+....-|...-++..+..++.+....+....+..-.++..
T Consensus 80 ~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~v~~ 159 (411)
T KOG1203 80 TTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVVIVIK 159 (411)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 74999558873639999999977970234215736554443253334442224302256541225666301345315874
No 298
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=56.59 E-value=17 Score=17.45 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 36678999885110
Q gi|254780893|r 190 IDVFICKLRKKLSN 203 (236)
Q Consensus 190 ld~~I~rLRkKL~~ 203 (236)
...++.+-++|...
T Consensus 262 ~~~Fv~~y~~~~g~ 275 (312)
T cd06333 262 ALDFVKAYEAKYGA 275 (312)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998688
No 299
>pfam00563 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Probab=56.50 E-value=5.9 Score=20.16 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=9.0
Q ss_pred EECCCCCCCCCCCCCCCCC
Q ss_conf 8311498743343111222
Q gi|254780893|r 49 ILDLGLTDIPGFEVLRALR 67 (236)
Q Consensus 49 IlD~~lp~~~G~~~~~~ir 67 (236)
|.|..-...-|+|++-+++
T Consensus 17 I~~~~~~~i~g~E~l~R~~ 35 (233)
T pfam00563 17 IVDLRTGKVIGYEALLRWQ 35 (233)
T ss_pred EEECCCCCEEEEEEEEEEE
T ss_conf 5997999999999999668
No 300
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=55.77 E-value=9.1 Score=19.02 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=38.6
Q ss_pred HHHHHCCC-EEEEECCHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCC
Q ss_conf 99998898-99999998999999985-79947883114987433431112222322331001333210000011232210
Q gi|254780893|r 18 LMLKSENF-NVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGA 95 (236)
Q Consensus 18 ~~L~~~g~-~v~~a~~~~eal~~~~~-~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GA 95 (236)
..|...+. -|....+.++++..... -.-.+-++++.|-.-+.++.++.+++..+.--+|-...--+.++.-++.++||
T Consensus 5 ~~~~~~plvaIlR~~~~~~a~~~~~al~~~Gi~~iEVTl~tp~a~~~I~~l~~~~~~~~~iGAGTVlt~e~~~~ai~aGA 84 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDDALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCC
T ss_conf 99985997999958999999999999998699889991799769999999999679865998620467999999998599
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 11122332221111
Q gi|254780893|r 96 DDYISKPFNKEELV 109 (236)
Q Consensus 96 ddyi~KP~~~~eL~ 109 (236)
+|+.-|.-..|++
T Consensus 85 -~FiVSP~~~~~vi 97 (206)
T PRK09140 85 -RLIVTPNIDPEVI 97 (206)
T ss_pred -CEEECCCCCHHHH
T ss_conf -9999999989999
No 301
>KOG4175 consensus
Probab=55.38 E-value=6.6 Score=19.86 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCHHH---HHHHHHHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCC---
Q ss_conf 99899---999998579947883114987--433--------------------43111222232233100133321---
Q gi|254780893|r 31 DLGED---GIELCKFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMS--- 82 (236)
Q Consensus 31 ~~~~e---al~~~~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~--- 82 (236)
.+.++ ++.-+...--|++=|.+..++ -|| ++++++.|-+...+|||.++.++
T Consensus 29 P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl 108 (268)
T KOG4175 29 PDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPIL 108 (268)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHH
T ss_conf 96788999998875279674886685676456773455667899872896899999999850468630266220144887
Q ss_pred ---CHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---00000112322101112233222111
Q gi|254780893|r 83 ---SIEDKVRGLQSGADDYISKPFNKEEL 108 (236)
Q Consensus 83 ---~~~~~~~al~~GAddyi~KP~~~~eL 108 (236)
.+..+-.+-++||.+||.-..-++|-
T Consensus 109 ~yG~e~~iq~ak~aGanGfiivDlPpEEa 137 (268)
T KOG4175 109 RYGVENYIQVAKNAGANGFIIVDLPPEEA 137 (268)
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCHHHH
T ss_conf 64078999999965877458506886898
No 302
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.32 E-value=14 Score=17.81 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHHCCCCEEEECCCCCCCC--C----------CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 9999857994788311498743--3----------431112222322331001333210
Q gi|254780893|r 37 IELCKFYEFDAIILDLGLTDIP--G----------FEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 37 l~~~~~~~~DlvIlD~~lp~~~--G----------~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
.+.+...+||+||+-.+.-+.. . -+++..+|+..|+.+|+++|-.+.
T Consensus 49 ~~ql~~~~PDLVil~~GtNda~~~~~~~~~~~~~~~~~I~~ir~~~P~a~ill~~p~d~ 107 (189)
T cd01825 49 QAQLAALPPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPPDS 107 (189)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 99997359998999905642356899999999999999999997589980999828827
No 303
>PRK09639 RNA polymerase sigma factor SigX; Provisional
Probab=55.25 E-value=17 Score=17.32 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|+++.-.++.+- ..| .|..+|.+.+ ..+..||.++++|-|++|..
T Consensus 112 ~Lp~~~r~v~~l~--~~g--~s~~EIA~~l-----~is~~tVk~~l~RA~~~Lr~ 157 (166)
T PRK09639 112 KMTERDRTVLLLR--FSG--YSYKEIAQAL-----GIDESSVGTTLHRAKKKFRK 157 (166)
T ss_pred HCCHHHHHHHHHH--HHC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 3999999999999--938--9999999998-----91999999999999999999
No 304
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=55.14 E-value=11 Score=18.54 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC---CCCHHCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 99999998579947883114987433431112222322331001333---210000011232210111-223322211
Q gi|254780893|r 34 EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG---MSSIEDKVRGLQSGADDY-ISKPFNKEE 107 (236)
Q Consensus 34 ~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~---~~~~~~~~~al~~GAddy-i~KP~~~~e 107 (236)
.+..+.+.+..||++|+ +.-||.| +.+.+++|+.+..+|++---+ +.=.+.|++-+....|-- ..=||+++-
T Consensus 300 ~~l~~~i~~~~PD~~I~-ID~PdFN-lrlak~lkk~gi~ik~vhYVsPsVWAWr~~R~k~i~~~vD~~l~lfPFE~~~ 375 (607)
T PRK01021 300 RKLYKTILKENPETVIC-IDFPDFH-FLLIKKLRKCGYKGKIIHYVCPSIWAWRPKRKTILEKYLDLLLLILPFEQGL 375 (607)
T ss_pred HHHHHHHHHCCCCEEEE-ECCCCCC-HHHHHHHHHCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHEECCCCCHHH
T ss_conf 99999998619999999-5899878-8999999972899986899788368866217999999886730526778899
No 305
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.00 E-value=18 Score=17.29 Aligned_cols=52 Identities=17% Similarity=0.083 Sum_probs=23.5
Q ss_pred EEEEECCCHHH----HHHHHHHHH----HCCCEEEE-ECCH---HHHHHHH----HHCCCCEEEECCC
Q ss_conf 59998699899----999999999----88989999-9998---9999999----8579947883114
Q gi|254780893|r 2 RILLIEDDKAL----AHSIELMLK----SENFNVYV-TDLG---EDGIELC----KFYEFDAIILDLG 53 (236)
Q Consensus 2 kILivedd~~~----~~~l~~~L~----~~g~~v~~-a~~~---~eal~~~----~~~~~DlvIlD~~ 53 (236)
||+++.|-... ...+...|. ..+++|.- .-+| .+.+..+ ...+||+|++-++
T Consensus 3 rIv~~GDSiT~g~g~~~~~~~~l~~~~~~~~~~viN~Gi~G~t~~~~~~r~~~~v~~~~Pd~Vii~~G 70 (191)
T cd01834 3 RIVFIGNSITDRGGYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFG 70 (191)
T ss_pred EEEEECCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99998887430996646899999986799986599843668877779999898873279999999846
No 306
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=54.74 E-value=6.9 Score=19.75 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 9899999998579947883114987-433431112222322331001333210000011232210111
Q gi|254780893|r 32 LGEDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDY 98 (236)
Q Consensus 32 ~~~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddy 98 (236)
+..+-...+-..-.|++++|..-.. ..-+++++.||+..|.+|||.- .-.+.+......++|||..
T Consensus 238 ~~~eRa~~Lv~aGvDvlvIDtAhGhs~~v~~~ik~ik~~~p~v~vIaG-NVaT~~~a~~Li~aGAD~v 304 (499)
T PTZ00314 238 EDKERAAALIDAGVDVLVLDSSQGNSIYQIDFIKWIKSTYPHLEVIAG-NVVTQDQAKNLIDAGADGI 304 (499)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE-EECHHHHHHHHHHCCCCEE
T ss_conf 489999999986998999816887727899999998852798846764-3310999999997499879
No 307
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=54.04 E-value=18 Score=17.20 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++++-.++.+-.- .| .|.++|.+.+ ..+..||.++++|-|+||...
T Consensus 142 ~Lp~~~R~vi~L~~~-~g--~s~~EIA~~L-----gis~~TVk~rl~rA~~~LR~~ 189 (194)
T PRK09646 142 ALTDTQREAITLAYY-GG--LTYREVAERL-----AVPLGTVKTRMRDGLRRLRDC 189 (194)
T ss_pred HCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 678157899999999-39--9999999998-----919999999999999999998
No 308
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=54.01 E-value=11 Score=18.49 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=55.1
Q ss_pred EEEEECCHHHHHHHHHHCCCC-EEEECCCCC---CCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 999999989999999857994-788311498---743343111222232233100133321000001123221011122
Q gi|254780893|r 26 NVYVTDLGEDGIELCKFYEFD-AIILDLGLT---DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 26 ~v~~a~~~~eal~~~~~~~~D-lvIlD~~lp---~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~ 100 (236)
...+..++.+....+....+| +.|+|+.-. ...-+++++.|.+ ...+|+-+=.+-.+.++..+.|++|||-.+.
T Consensus 24 ~~~~~gdP~~~a~~~~~~g~d~i~ivDLda~~~~~~~n~~~i~~i~~-~~~~pi~vgGGIrs~e~~~~~l~~Ga~kvvi 101 (229)
T pfam00977 24 NLVYAGDPVELAKRYEEEGADELHFVDLDAAKEGRPVNLDLIEEIAE-EVFIPVQVGGGIRSLEDAERLLSAGADKVII 101 (229)
T ss_pred CCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCEEEHHHHHHHHHCCCCEEEE
T ss_conf 83677999999999998799989999686630268106999999998-6698789964561189999999769989995
No 309
>PRK12520 RNA polymerase sigma factor; Provisional
Probab=53.59 E-value=18 Score=17.15 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
+|+++.-.++.+=. -.| .|..+|.+.+ ..+..||.++++|-|++|...
T Consensus 131 ~Lp~~~R~v~~Lr~-~~~--ls~~EIA~~l-----~~s~~tVk~~l~RAR~~Lr~~ 178 (191)
T PRK12520 131 RLPARTGRVFMMRE-WLE--LETEEICKEL-----QITATNLWVMLYRARLRLREC 178 (191)
T ss_pred HCCHHHHHHHHHHH-HHC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 77499999999999-938--9999999998-----949999999999999999999
No 310
>PRK11922 RNA polymerase sigma factor; Provisional
Probab=53.48 E-value=19 Score=17.14 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|+++.-.++.+-.- .| .|..||.+.+ ..+..||.++++|=|+||..
T Consensus 149 ~Lp~~~R~v~~L~~~-eg--lS~~EIA~~L-----gis~~TVKsrL~RArk~LRe 195 (231)
T PRK11922 149 ALPDAFRAVFVLRVV-EE--LSVEETAQAL-----GLPEETVKTRLHRARRLLRE 195 (231)
T ss_pred HCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 099999999999999-39--9999999998-----93999999999999999999
No 311
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=53.47 E-value=19 Score=17.14 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC---CEEEECC
Q ss_conf 41168899987189973789999998718877777530366789998851106788843888878---2026456
Q gi|254780893|r 152 GKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG---RGYVLRE 223 (236)
Q Consensus 152 ~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG---~GY~l~~ 223 (236)
+.-..||.+|..++ .+-.+|.+.+ ..+..++..|++.|++. .+|...+. ..|.+.+
T Consensus 7 ~~r~~Il~~L~~~~---~~~~eia~~l-----~is~~~vs~hL~~L~~~--------Gli~~~~~~~~~~y~l~~ 65 (78)
T cd00090 7 PTRLRILRLLLEGP---LTVSELAERL-----GLSQSTVSRHLKKLEEA--------GLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHHHCC---CCHHHHHHHH-----CCCHHHHHHHHHHHHHC--------CCEEEEEECCEEEEEECC
T ss_conf 99999999998489---0699998777-----84878999999999988--------986899988999999799
No 312
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.92 E-value=17 Score=17.32 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=40.4
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 332224641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 145 g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
..-+++|+.-..+|.+|.++.+. +|-++|++.+-......+ + .-|+|-=+.|.+.
T Consensus 14 ~~glr~T~qR~~vl~~L~~~~~~-~sAeei~~~l~~~~p~is---l-aTVYr~L~~l~e~ 68 (145)
T COG0735 14 EAGLRLTPQRLAVLELLLEADGH-LSAEELYEELREEGPGIS---L-ATVYRTLKLLEEA 68 (145)
T ss_pred HCCCCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCC---H-HHHHHHHHHHHHC
T ss_conf 85998688899999999966899-999999999997489998---8-7999999999988
No 313
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=52.83 E-value=8.6 Score=19.14 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=17.8
Q ss_pred HHCCCCEEEEC-----CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHH
Q ss_conf 85799478831-----1498743343111222232233100133321000
Q gi|254780893|r 41 KFYEFDAIILD-----LGLTDIPGFEVLRALRVAKISTPVCILSGMSSIE 85 (236)
Q Consensus 41 ~~~~~DlvIlD-----~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~ 85 (236)
....||++||| ++..=++--+++..|.... .--=++||+++-.+
T Consensus 93 ~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~rp-~~~evVlTGr~~p~ 141 (172)
T pfam02572 93 ASGSYDLVVLDELNYALKYGYLDLEEVLELLRNRP-EGQHVVLTGRGAPP 141 (172)
T ss_pred HCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCH
T ss_conf 58898999735579997559968999999998289-98779998999999
No 314
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=52.38 E-value=16 Score=17.58 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=19.4
Q ss_pred CEEEEECCCH-------HHHHHHHHHHHHCCCEEE
Q ss_conf 9599986998-------999999999998898999
Q gi|254780893|r 1 MRILLIEDDK-------ALAHSIELMLKSENFNVY 28 (236)
Q Consensus 1 mkILivedd~-------~~~~~l~~~L~~~g~~v~ 28 (236)
|||+++-++. .....+...|...|+.+.
T Consensus 3 MKIlfi~~~l~~~GGaErvl~~La~~L~~~~~~~~ 37 (361)
T PRK09922 3 MKIAFIGEAVSGFGGMETVISNVINTFENSKINCE 37 (361)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 09999999999988049999999999987199879
No 315
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=52.06 E-value=20 Score=17.00 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=48.1
Q ss_pred CEEEEECCCHHHHHHHHHHHH-HCCCEEEE-ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 959998699899999999999-88989999-9998999999985799478831149874334311122223223310013
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLK-SENFNVYV-TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~-~~g~~v~~-a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
|||.+|.--..-...+..... ..++++.. ++.-.+....+.. .+++-.. +.++ ..+....++.-+|..
T Consensus 1 iki~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~-~~~~~~~-------~~~~--~~l~~~~iD~v~I~t 70 (120)
T pfam01408 1 LRVGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAE-SFGVPAY-------SDLE--ELLADPDVDAVSVAT 70 (120)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH-HHCCCEE-------CCHH--HHHHCCCCCEEEECC
T ss_conf 98999907799999999998559997899998299999999999-8399678-------8699--997377889899908
Q ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3321000001123221011122332221
Q gi|254780893|r 79 SGMSSIEDKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 79 s~~~~~~~~~~al~~GAddyi~KP~~~~ 106 (236)
....-.+....+++.|..=|+.||+...
T Consensus 71 p~~~H~~~~~~~l~~g~~v~~EKP~~~~ 98 (120)
T pfam01408 71 PPGLHFELALAALEAGKHVLVEKPLATT 98 (120)
T ss_pred CHHHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 7461899999999819989996898199
No 316
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=51.86 E-value=20 Score=16.98 Aligned_cols=47 Identities=6% Similarity=-0.004 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|++....++.+-.- .| .|..+|.+.+ ..+.+||.++++|-|+||..
T Consensus 116 ~L~~~~r~v~~l~~~-~g--~s~~EIA~~l-----~is~~tVk~~l~ra~~~Lr~ 162 (171)
T PRK09645 116 QLSPEHRAVLVRSYY-RG--WSTAQIAADL-----GIPEGTVKSRLHYAVRALRL 162 (171)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 599998879899998-69--9999999998-----92999999999999999999
No 317
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=51.80 E-value=20 Score=16.98 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 2464116889998718997378999999871887777753036678999885110678
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG 206 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~ 206 (236)
.|+++.-.++.+-.- .| .|.+||.+.+ ..+..||.++++|-|+||...-+
T Consensus 122 ~Lp~~~R~v~~L~~~-~g--ls~~EIA~~L-----~is~~tVk~rl~RArk~Lr~~Lg 171 (185)
T PRK12542 122 ELNESNRQVFKYKVF-YN--LTYQEISSVM-----GITEANVRKQFERARKRVQNMIG 171 (185)
T ss_pred HCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 299988899767998-39--9999999998-----92999999999999999999876
No 318
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=51.64 E-value=13 Score=18.08 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=55.2
Q ss_pred EEECCHHHHHHHHHHCCCC-EEEECCCC---CCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999989999999857994-78831149---874334311122223223310013332100000112322101112233
Q gi|254780893|r 28 YVTDLGEDGIELCKFYEFD-AIILDLGL---TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102 (236)
Q Consensus 28 ~~a~~~~eal~~~~~~~~D-lvIlD~~l---p~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP 102 (236)
.+..|+.+....+...-.| +.++|+.- ....-+++++.|.+ ...+|+-+-.+-.+.++.-+.|++|||-.+.-.
T Consensus 26 ~y~~dP~~~A~~~~~~Ga~~lhvvDLd~A~~g~~~n~~~I~~i~~-~~~~pi~vGGGIrs~e~~~~~l~~GadkVvigS 103 (241)
T PRK00748 26 VYGDDPLAQAQAWQDQGAEWLHLVDLDGAFAGRPVNLELIEAIVA-AVDIPVQLGGGIRDLETVEAYLDAGVARVIIGT 103 (241)
T ss_pred EECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 607899999999998799989999785420288207999999998-679999982770749999999976977588647
No 319
>PRK06811 RNA polymerase factor sigma-70; Validated
Probab=51.58 E-value=20 Score=16.96 Aligned_cols=48 Identities=23% Similarity=0.151 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++.+..++.+-.- .| .|.++|.+.+ ..+..||.++++|-|+||...
T Consensus 128 ~L~~~~r~v~~l~~~-~~--~s~~EIA~~l-----~is~~tVk~rl~Rar~~Lr~~ 175 (185)
T PRK06811 128 DLKKLDREIFIKRYL-LG--ESIEEIAKKL-----GLTRSAIDNRLSRGRKKLKNK 175 (185)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999-49--9999999998-----929999999999999999999
No 320
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.58 E-value=20 Score=16.96 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECC--HH----HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 9999999999988989999999--89----9999998579947883114987433431112222322331001333
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDL--GE----DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~--~~----eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
.+...+...+++.||.+..+.+ .. .....+....+|-+|+ ++....-+..+.+++ ..+|++++..
T Consensus 21 ~l~~gie~~~~~~Gy~lli~~~~~~~~~~~~~~~~l~~~~vDGiIi---~~~~~~~~~~~~l~~--~~iP~V~i~r 91 (270)
T cd06294 21 EVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFIL---LYSREDDPIIDYLKE--EKFPFVVIGK 91 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHHHHHH--CCCCEEEECC
T ss_conf 9999999999985998999918996999999999998279988999---579898499999997--6999999877
No 321
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=51.34 E-value=19 Score=17.13 Aligned_cols=83 Identities=24% Similarity=0.317 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCEEEEECC---HHHHHHHHHHCCCCEEEECCCCCC-CCCC-CCCCCCCCCCCCCCEECC-CCCCCHHCCC
Q ss_conf 999999988989999999---899999998579947883114987-4334-311122223223310013-3321000001
Q gi|254780893|r 15 SIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTD-IPGF-EVLRALRVAKISTPVCIL-SGMSSIEDKV 88 (236)
Q Consensus 15 ~l~~~L~~~g~~v~~a~~---~~eal~~~~~~~~DlvIlD~~lp~-~~G~-~~~~~ir~~~~~~pII~l-s~~~~~~~~~ 88 (236)
.+...|+..||+|.-..+ .+++.+...+..||+|-+-.-|.. +.+. .+...+++.+-.-|+++. .+..-.++-
T Consensus 123 iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~- 201 (227)
T COG5012 123 IVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDW- 201 (227)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-
T ss_conf 9999998379578743899987999999997287566406877887997999999999768854748852686246899-
Q ss_pred CCCCCCCCCCC
Q ss_conf 12322101112
Q gi|254780893|r 89 RGLQSGADDYI 99 (236)
Q Consensus 89 ~al~~GAddyi 99 (236)
+=+.|||.|-
T Consensus 202 -a~~iGAD~~~ 211 (227)
T COG5012 202 -ADKIGADAYA 211 (227)
T ss_pred -HHHHCCCCCC
T ss_conf -9971877567
No 322
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161 Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis. For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=51.04 E-value=12 Score=18.36 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC---CCCCC--CCEECCCCCCCHHCCCCCCCCCCCCCC
Q ss_conf 89999999857994788311498743343111222---23223--310013332100000112322101112
Q gi|254780893|r 33 GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALR---VAKIS--TPVCILSGMSSIEDKVRGLQSGADDYI 99 (236)
Q Consensus 33 ~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir---~~~~~--~pII~ls~~~~~~~~~~al~~GAddyi 99 (236)
....=..|++.++|.+|+ ..+..+|+-+.+|. +..|. +|++++.|-=+-.-.-..|..|+|=+|
T Consensus 488 ~~~iA~~f~~~kiDgL~I---IGGFEAf~al~qL~~aR~~YP~F~IPmv~iPATISNNVPGTe~SLG~DTaL 556 (777)
T TIGR02478 488 LGEIAYKFQKHKIDGLLI---IGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTAL 556 (777)
T ss_pred HHHHHHHHHHCCCCEEEE---ECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCHHHHHHHH
T ss_conf 899999998609887999---760368899999999986188557885786660107787244302201577
No 323
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=50.93 E-value=20 Score=16.90 Aligned_cols=55 Identities=7% Similarity=-0.079 Sum_probs=21.1
Q ss_pred HHHHCCCEEEEECCHHHHHHH----HHHCCCCEEEECCCCCCCC---CCCCCCCCCCCCCCC
Q ss_conf 999889899999998999999----9857994788311498743---343111222232233
Q gi|254780893|r 19 MLKSENFNVYVTDLGEDGIEL----CKFYEFDAIILDLGLTDIP---GFEVLRALRVAKIST 73 (236)
Q Consensus 19 ~L~~~g~~v~~a~~~~eal~~----~~~~~~DlvIlD~~lp~~~---G~~~~~~ir~~~~~~ 73 (236)
.....++.|+...+..+.++. +...-|.+-|....-|-.+ --++++.|++.++++
T Consensus 43 ~~~~~~~~v~llG~~~~~~~~~~~~l~~~yP~l~i~g~~~g~f~~~e~~~i~~~I~~~~~di 104 (172)
T pfam03808 43 RAAERGKRVFLLGGKPGVLEKAAARLRARYPGLRIVGTHDGYFSPEEEEAIIEAINASGPDL 104 (172)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 99864983899808889999999999988799559998799998689999999998459999
No 324
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=50.92 E-value=20 Score=16.89 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 899999999999889899999998------9999999857994788311498743343111222232233100133321
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
..+...+...+++.||.+..+.+. .+.++.+....+|.+|+- |....-+..+.++ ...+|+|++....
T Consensus 15 ~~~~~gi~~~a~~~gy~~~i~~~~~~~~~~~~~i~~l~~~~vDgiIi~---~~~~~~~~~~~~~--~~~iPvV~~~~~~ 88 (264)
T cd06267 15 AELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILA---PSRLDDELLEELA--ALGIPVVLVDRPL 88 (264)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHHHHH--HCCCCEEEEEECC
T ss_conf 999999999999869989999789998999999999995799999967---8889989999999--8699889996047
No 325
>PRK13135 consensus
Probab=50.90 E-value=14 Score=17.96 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=46.4
Q ss_pred EECCHHHHHHHH---HHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 999989999999---8579947883114987--433--------------------431112222322331001333210
Q gi|254780893|r 29 VTDLGEDGIELC---KFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 29 ~a~~~~eal~~~---~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
...|.+..++.+ ...-.|++=+.+..++ .|| +++++.+|.. ..+|++++|.++.
T Consensus 26 G~P~~~~s~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~-~~~PivlM~Y~N~ 104 (267)
T PRK13135 26 GDPDLATTEALIPLLAESGADIIELGVPFSDPMADGPTIQLSSERALAAGTTLPRILAMVRSVRRR-CQVPIVLMGYYNP 104 (267)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCEEEEECCHH
T ss_conf 189989999999999975999999789989866658999999999997698499999999986335-8998899842309
Q ss_pred H------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------00011232210111223322211
Q gi|254780893|r 84 I------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 84 ~------~~~~~al~~GAddyi~KP~~~~e 107 (236)
. ...-+|-++|+|+.|.--..++|
T Consensus 105 i~~yG~e~F~~~~~~~GvdGlIipDLP~ee 134 (267)
T PRK13135 105 IFAYGLERFAADAAAAGVDGVLLVDLPPEE 134 (267)
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 988468999999997499747637899788
No 326
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=50.82 E-value=20 Score=16.89 Aligned_cols=50 Identities=10% Similarity=0.251 Sum_probs=37.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEECCC
Q ss_conf 59998699899999999999889899999998--99999998579947883114
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLG--EDGIELCKFYEFDAIILDLG 53 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~--~eal~~~~~~~~DlvIlD~~ 53 (236)
+|+||.-.-.+..++..+|+..||.|...+.. .++-+.+ ...|+||+-+.
T Consensus 100 ~i~IIGG~G~mG~~F~~~f~~sGy~V~ild~~dw~~~~~~~--~~advViVsVP 151 (374)
T PRK11199 100 PVVIVGGKGQLGRLFAKMLTLSGYQVRILEKDDWDRADDIL--ADAGMVIVSVP 151 (374)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH--HCCCEEEEEEC
T ss_conf 17998079827799999999679879961644453489887--17998999814
No 327
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=50.76 E-value=21 Score=16.88 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=41.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE---CCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 95999869989999999999988989999999899999998579947883---114987433431112222322331001
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIIL---DLGLTDIPGFEVLRALRVAKISTPVCI 77 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIl---D~~lp~~~G~~~~~~ir~~~~~~pII~ 77 (236)
||-.=||.. ...+..+|++.||+|....+..++ ..+|++|+ |.+|-+ + .......|||=
T Consensus 1 m~kIaVE~~---Ls~v~e~L~~~Gy~Vv~l~~~~~~------~~~da~VitG~d~N~mG---i------~d~~t~~pVI~ 62 (80)
T pfam03698 1 MKKIAVEQS---LSNIEEALKEKGYEVVRLKNEQDA------QGCDACVVTGLDSNMMG---I------EDTVTKAPVID 62 (80)
T ss_pred CCCEEECCC---CHHHHHHHHHCCCEEEECCCCCCC------CCCCEEEEECCCCCCCC---C------CCCCCCCCEEE
T ss_conf 982663267---259999999779878867870325------66588999589865214---4------13345687486
Q ss_pred CCCCCCH
Q ss_conf 3332100
Q gi|254780893|r 78 LSGMSSI 84 (236)
Q Consensus 78 ls~~~~~ 84 (236)
-++.+.+
T Consensus 63 A~G~Tae 69 (80)
T pfam03698 63 ASGLTAE 69 (80)
T ss_pred CCCCCHH
T ss_conf 6899999
No 328
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=50.65 E-value=21 Score=16.87 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 8999999999998898999-9999899999998579947883114987
Q gi|254780893|r 10 KALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTD 56 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~ 56 (236)
...+..++..|++.|+++. ..-+..|... ....||+++.=...|+
T Consensus 15 t~v~~ki~~~l~e~gi~~~i~~~~i~e~~~--~~~~~Dliv~tt~~~~ 60 (89)
T cd05566 15 TVVASKVKELLKENGIDVKVEQCKIAEVPS--LLDDADLIVSTTKVPE 60 (89)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHH--CCCCCCEEEEECCCCC
T ss_conf 999999999999869915999975999874--2799878999442688
No 329
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=50.36 E-value=21 Score=16.84 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|+++...++.+-.- -| .|..+|.+.+ ..+..||.++++|-|+||..
T Consensus 128 ~Lp~~~R~v~~L~~~-~g--~s~~EIA~~l-----~is~~tVk~~l~RAr~~Lr~ 174 (186)
T PRK05602 128 ALPERQREAIVLQYY-QG--LSNIEAARVM-----GLSVDALESLLARARRALRA 174 (186)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 599878899999986-38--9999999998-----93999999999999999999
No 330
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.33 E-value=17 Score=17.43 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHC-CC
Q ss_conf 89999999999988-98
Q gi|254780893|r 10 KALAHSIELMLKSE-NF 25 (236)
Q Consensus 10 ~~~~~~l~~~L~~~-g~ 25 (236)
..+...+...|+++ |+
T Consensus 12 ~~i~~~I~~aL~ED~~~ 28 (288)
T PRK07896 12 DEARAVIARALDEDLRY 28 (288)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999999820999
No 331
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=50.31 E-value=21 Score=16.84 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHCCCEEEEECC---H---HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 9999999999988989999999---8---999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDL---G---EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~---~---~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+++.||.+..+.+ . .+.++.+....+|-+|+= |....-+....+. ...+|++++...
T Consensus 16 ~i~~~ie~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vdGiIi~---~~~~~~~~~~~l~--~~~~PvV~i~~~ 87 (268)
T cd06270 16 PLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILH---SKALSDDELIELA--AQVPPLVLINRH 87 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHHH--HCCCCEEEECCC
T ss_conf 99999999999859999999589998999999999996599999995---2779989999999--649989998676
No 332
>PRK09415 RNA polymerase factor sigma C; Reviewed
Probab=50.27 E-value=21 Score=16.83 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
+|++..-.++.+..- -| .|..+|.+.+ ..+.+||.++++|-|+||..
T Consensus 127 ~L~~~~r~ii~l~~~-~~--~s~~EIA~~l-----~is~~tV~~rl~Rark~Lr~ 173 (177)
T PRK09415 127 SLPIKYREVIYLFYY-EE--LSIKEIATVT-----GVNENTIKTRLKKAKELLKK 173 (177)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 699999999999998-09--9899999988-----92999999999999999998
No 333
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=50.11 E-value=21 Score=16.82 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=49.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 59998699899999999999889--8999999989999999857994788311498743343111222232233
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSEN--FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g--~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~ 73 (236)
+|++-++|..+.+.+...-+.+| |.+....+... .+. .+.-++..+.|=+.+--++...||.....+
T Consensus 32 ~il~~e~D~~v~etv~~V~~rwGG~F~ie~~~~w~~---~~k--~~~G~vVHLTMYG~~i~dvi~~Ir~~~k~i 100 (339)
T PRK12703 32 SILVDERDETLENTIKKVVDNFGGSFEIKTGIEWKS---EFK--KFHGIRVHLTMYGRPIEDVIDEIRESGKDV 100 (339)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH---HHH--HCCCEEEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf 544368876789999999973499779971767999---987--359879998316886578777765128977
No 334
>PRK08104 consensus
Probab=50.01 E-value=6.5 Score=19.88 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=23.6
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEE----ECCHHHHHHHHHHCCCCEE
Q ss_conf 9869989999999999988989999----9998999999985799478
Q gi|254780893|r 5 LIEDDKALAHSIELMLKSENFNVYV----TDLGEDGIELCKFYEFDAI 48 (236)
Q Consensus 5 ivedd~~~~~~l~~~L~~~g~~v~~----a~~~~eal~~~~~~~~Dlv 48 (236)
+.-+|...+..+.+.|-+.|+.+.. .....++++.+....||++
T Consensus 21 ir~~~~~~a~~la~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~p~~~ 68 (212)
T PRK08104 21 IVINKLEHAVPLAKALVAGGVRVLEVTLRTPCALEAIRAIAKEVPEAI 68 (212)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCE
T ss_conf 977999999999999998799889996888149999999998689856
No 335
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=49.91 E-value=21 Score=16.80 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=53.5
Q ss_pred EEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 599986998----9999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDDK----ALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~----~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
|+.+|-.|. .....++..+++.|.+|.. ..+....+..+....||+|++-. .+.++..+.++.++.+
T Consensus 135 kv~~i~~dy~~g~~~~~~~~~~~~~~G~eVv~e~~~p~g~~Dfs~~l~kI~~a~pD~V~~~~--~g~~~~~f~rq~~~~G 212 (374)
T TIGR03669 135 KIYTIAADYNFGQLSADWVRVIAKENGAEVVGEEFIPLSVSQFSSTIQNIQKADPDFVMSML--VGANHASFYEQAASAN 212 (374)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHCC
T ss_conf 48999636641478999999999866988999996689996689999999867999999905--5874799999999749
Q ss_pred CCCCEECCCCC
Q ss_conf 23310013332
Q gi|254780893|r 71 ISTPVCILSGM 81 (236)
Q Consensus 71 ~~~pII~ls~~ 81 (236)
..+|+...+..
T Consensus 213 l~~p~~~~~~~ 223 (374)
T TIGR03669 213 LNLPMGTSTAM 223 (374)
T ss_pred CCCCCCCEEEE
T ss_conf 99863220232
No 336
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.82 E-value=14 Score=17.89 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=52.3
Q ss_pred EECCHHHHHHHHHHCCCCEEEECCCC---CCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 99998999999985799478831149---874334311122223223310013332100000112322101112233
Q gi|254780893|r 29 VTDLGEDGIELCKFYEFDAIILDLGL---TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102 (236)
Q Consensus 29 ~a~~~~eal~~~~~~~~DlvIlD~~l---p~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP 102 (236)
...++.+.-..+.+.---+.|+|+.- ...+-+++++.+.+ ...+|+-+=.+-.+.++.-+.+++||+-.+.-.
T Consensus 28 ~~~dP~~~A~~~~~~a~~lhivDLd~a~~g~~~n~~~I~~i~~-~~~~piqvGGGIrs~e~i~~~l~~Ga~kViigt 103 (228)
T PRK04128 28 VYGDPVEIALRFSEYVDKIHVVDLDGAFEGKPKNLDVVKNIIE-ETGLKVQVGGGFRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH-HCCCEEEECCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 8789999999999669989999880301498326999999986-549628973860779999999968997698145
No 337
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.60 E-value=13 Score=17.98 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCH------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4311122223223310013332100------00011232210111223322211
Q gi|254780893|r 60 FEVLRALRVAKISTPVCILSGMSSI------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 60 ~~~~~~ir~~~~~~pII~ls~~~~~------~~~~~al~~GAddyi~KP~~~~e 107 (236)
+++++.+|.. +++|+++++.++.. ...-++-++|+|+.|.--.-++|
T Consensus 74 f~~~~~~r~~-~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE 126 (256)
T PRK13111 74 LELLREIRAK-PTIPIVLMTYYNPIFQYGVEAFAADAAEAGVDGLIIPDLPPEE 126 (256)
T ss_pred HHHHHHHHCC-CCCCEEEEEECCHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 9999998606-8998899850308987099999999997599779816999788
No 338
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=49.48 E-value=6.4 Score=19.94 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHH-CCCCEEEECCCCC--CCCCCCCCCCCCCCCCCCCEE
Q ss_conf 998999999985-7994788311498--743343111222232233100
Q gi|254780893|r 31 DLGEDGIELCKF-YEFDAIILDLGLT--DIPGFEVLRALRVAKISTPVC 76 (236)
Q Consensus 31 ~~~~eal~~~~~-~~~DlvIlD~~lp--~~~G~~~~~~ir~~~~~~pII 76 (236)
-+..+++....+ -..++-++.++.| ...|+..++.+|+..|+.+|+
T Consensus 13 ~~l~~A~~ia~e~v~~~~diiE~GTPLIk~eG~~aV~~lr~~fP~~~iv 61 (429)
T PRK07028 13 LELDRAIEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPDLTIV 61 (429)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8889999999987415875999176888864189999999878998698
No 339
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=49.07 E-value=22 Score=16.72 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=32.9
Q ss_pred CCCCCCCCHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 322246411688999871-8997378999999871887777753036678999885
Q gi|254780893|r 146 HRIHLTGKEYQMIELLSL-RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200 (236)
Q Consensus 146 ~~i~LT~~E~~lL~~L~~-~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkK 200 (236)
.+..||..+|.+|.+|.+ ++| +|-.+|.+.+ ..+.-|+-..+.+|-+|
T Consensus 25 ~~~gLt~~q~~~L~~L~~~~~g--~tq~eLa~~l-----~v~~~t~tr~ld~LE~~ 73 (144)
T PRK03573 25 KPLELTQTHWVTLHNIHQLPPD--QSQIQLAKAI-----GIEQPSLVRTLDQLEEK 73 (144)
T ss_pred HHCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHC
T ss_conf 8669982599999999973989--8999999997-----98783699999999988
No 340
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=48.87 E-value=22 Score=16.70 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCC--CCCCC---CCCCCCCCCCCCCEECCCCCCCHHCCC-----CCCCCCCCCCCC
Q ss_conf 9899999998579947883114987--43343---111222232233100133321000001-----123221011122
Q gi|254780893|r 32 LGEDGIELCKFYEFDAIILDLGLTD--IPGFE---VLRALRVAKISTPVCILSGMSSIEDKV-----RGLQSGADDYIS 100 (236)
Q Consensus 32 ~~~eal~~~~~~~~DlvIlD~~lp~--~~G~~---~~~~ir~~~~~~pII~ls~~~~~~~~~-----~al~~GAddyi~ 100 (236)
...|....+.+.--|.+++....++ .++-+ ..++.| .....|+.+........... .+.+.|+|..+.
T Consensus 13 ~~~E~a~~~~~aGa~~i~~~~~~~~~~~~~~~~~~~i~~~~-~~t~~P~~v~~~~~~~~~~~~~~~~~~~~~g~d~v~i 90 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVA-AETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEI 90 (200)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 89999999986887368864887982461699999999999-7079987998420566667759999999839998997
No 341
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=48.83 E-value=22 Score=16.70 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 899999999999889899999998------99999998579947883114987433431112222322331001333
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
..+...+...+++.||++..+.+. +..++.+.....|-+|+--.. ..-+.+..++ ...+|++++..
T Consensus 19 ~~l~~gie~~~~~~Gy~lll~~~~~~~~~~~~~~~~l~~~~vDGiIl~~~~---~~~~~~~~l~--~~~iP~V~~~r 90 (268)
T cd06271 19 AEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR---PDDPRVALLL--ERGFPFVTHGR 90 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC---CCHHHHHHHH--HCCCCEEEECC
T ss_conf 999999999999849989999589998999999999984898889996788---9819999999--77999999766
No 342
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=48.83 E-value=22 Score=16.70 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++....++.+.. --| .|.+||.+.+ .....||.++++|=|+||.+.
T Consensus 135 ~L~~~~r~~i~l~~-~eg--~s~~EIA~~l-----~is~~TVk~rl~rA~~~LR~~ 182 (184)
T PRK12537 135 QLEPARRNCILHAY-VDG--CSHAEIAQRL-----GAPLGTVKAWIKRSLKALREC 182 (184)
T ss_pred HCCHHHHHHHHHHH-HCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 09998999999988-439--9999999998-----929999999999999999987
No 343
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=48.58 E-value=22 Score=16.67 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|+++.-.++.+-.- .| .|..+|.+.+ ..+..||.++++|-|+||...
T Consensus 106 ~Lp~~~R~v~~L~~~-eg--~s~~EIA~~L-----~is~~tVksrl~RAr~~Lr~~ 153 (181)
T PRK09637 106 ALPEKYAEALRLTEL-EG--LSQKEIAEKL-----GLSLSGAKSRVQRGRVKLKEL 153 (181)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 699999899799988-59--9999999998-----949999999999999999999
No 344
>PRK07695 transcriptional regulator TenI; Provisional
Probab=48.54 E-value=21 Score=16.87 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1222232233100133321000001123221011122332221
Q gi|254780893|r 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 64 ~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~ 106 (236)
...|+..+. .+|-+|.++ .++...+...|||....-|+-+.
T Consensus 87 ~~~R~~~~~-~~IG~S~h~-~~e~~~a~~~gaDYi~~Gpif~T 127 (202)
T PRK07695 87 KSVREKFPY-LHVGYSVHS-LEEAIQAEKNGADYVVYGHVFPT 127 (202)
T ss_pred HHHHHHCCC-CEEEEECCC-HHHHHHHHHCCCCEEEECCCCCC
T ss_conf 999987799-899995799-99999997769996997254126
No 345
>PRK09462 fur ferric uptake regulator; Provisional
Probab=48.54 E-value=22 Score=16.67 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=38.5
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 32224641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 146 ~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.-+++|+.-..+|.+|....+..+|-++|++.+-.....++ + +-|+|-=+.|.+.
T Consensus 11 ~Glr~T~qR~~Il~~L~~~~~~hlsaeeI~~~l~~~~~~is---~-aTVYRtL~~L~e~ 65 (148)
T PRK09462 11 AGLKVTLPRLKILEVLQEPDNHHVSAEDLYKKLIDMGEEIG---L-ATVYRVLNQFDDA 65 (148)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC---H-HHHHHHHHHHHHC
T ss_conf 69985999999999998179999999999999997589986---6-6299999999868
No 346
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=48.29 E-value=22 Score=16.64 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=5.7
Q ss_pred EEEECCCHHHHHHHHHHH
Q ss_conf 999869989999999999
Q gi|254780893|r 3 ILLIEDDKALAHSIELML 20 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L 20 (236)
+|++-+-..+...+...+
T Consensus 33 ~lil~Pt~~L~~q~~~~~ 50 (144)
T cd00046 33 VLVLAPTRELANQVAERL 50 (144)
T ss_pred EEEECCHHHHHHHHHHHH
T ss_conf 999746799999999999
No 347
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.25 E-value=22 Score=16.64 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 8999999999998898999999989------99999985799478831149874334311122223223310013332
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLGE------DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~~------eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
..+...+...+++.||.+..+.+.. +.++.+....+|-+|+- |..+..+... .....+|++++...
T Consensus 15 ~~i~~gi~~~~~~~gy~~ll~~t~~~~~~e~~~l~~l~~~~vdGiI~~---~~~~~~~~~~---~~~~~~P~V~idr~ 86 (263)
T cd06280 15 TAVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFA---PTRATLRRLA---ELRLSFPVVLIDRA 86 (263)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHHHH---HHCCCCCEEEECCC
T ss_conf 999999999999869989999789998999999999981698799987---8878767999---97089968999256
No 348
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=48.11 E-value=9.3 Score=18.95 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 9899999998579947883114987-433431112222322331001333210000011232210111
Q gi|254780893|r 32 LGEDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDY 98 (236)
Q Consensus 32 ~~~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddy 98 (236)
+..+-...+.+.-.|++++|+---. ..-+++++.+|...|.+|||.- .-.+.+.....+++|||..
T Consensus 94 ~~~~r~~~l~~ag~d~i~IDvAhG~~~~~~~~ik~ir~~~p~~~IiaG-NV~T~e~a~~L~~~GaD~v 160 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAG-NVVTAEAARDLIDAGADGV 160 (325)
T ss_pred HHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCEEEC-CCCCHHHHHHHHHCCCCEE
T ss_conf 289999999976998999870003458899999999976899756864-5668999999986699899
No 349
>PRK12519 RNA polymerase sigma factor; Provisional
Probab=47.82 E-value=23 Score=16.60 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|++++..++.+-.- .| .|.++|.+.+ ..+..||.++++|-|+||..
T Consensus 141 ~Lp~~~R~v~~L~~~-eg--~s~~EIA~~l-----gis~~tVk~rl~rA~~~Lr~ 187 (194)
T PRK12519 141 QLPESQRQVLELAYY-EG--LSQSEIAKRL-----GIPLGTVKARARQGLLKLRE 187 (194)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 199887568899998-19--9999999998-----94999999999999999999
No 350
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=47.82 E-value=15 Score=17.78 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=9.1
Q ss_pred EEECCCHHHHHHHHHHHHHCCC
Q ss_conf 9986998999999999998898
Q gi|254780893|r 4 LLIEDDKALAHSIELMLKSENF 25 (236)
Q Consensus 4 Livedd~~~~~~l~~~L~~~g~ 25 (236)
.-.|-+.+.++.-...|+..|+
T Consensus 123 ~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 123 TTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred EEEEECHHHHHHHHHHHHHHCC
T ss_conf 9999527899999999998424
No 351
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=47.82 E-value=23 Score=16.60 Aligned_cols=68 Identities=21% Similarity=0.100 Sum_probs=41.3
Q ss_pred EEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 599986998----9999999999988989999-------99989999999857994788311498743343111222232
Q gi|254780893|r 2 RILLIEDDK----ALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 (236)
Q Consensus 2 kILivedd~----~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~ 70 (236)
||.++-+|. .....++..+++.|.+|.. ..+....+..+....||+|++- +.+.++..+++.+++.+
T Consensus 134 kvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~~G 211 (333)
T cd06331 134 RFYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLST--LVGDSNVAFYRQFAAAG 211 (333)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHHCC
T ss_conf 7999944861789999999999998599499999706997247999999876599999993--56603999999999759
Q ss_pred C
Q ss_conf 2
Q gi|254780893|r 71 I 71 (236)
Q Consensus 71 ~ 71 (236)
.
T Consensus 212 ~ 212 (333)
T cd06331 212 L 212 (333)
T ss_pred C
T ss_conf 9
No 352
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=47.78 E-value=23 Score=16.60 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=46.7
Q ss_pred EEEEECCC----HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 59998699----8999999999998898999-9999899999998579947883114987433431112222--322331
Q gi|254780893|r 2 RILLIEDD----KALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRV--AKISTP 74 (236)
Q Consensus 2 kILivedd----~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~--~~~~~p 74 (236)
|||++=.- ..+...+....++.|.++. .|-...++-+.+....||++++.-.. - +. ...+.+ ....+|
T Consensus 3 KILLvCaaGMSTSmlv~km~~~A~~~G~dveI~Av~~~e~~~~i~~~~yDv~LlgPQV---r-~~-~~~~k~~a~~~giP 77 (104)
T PRK09590 3 KALIICAAGMSSSLMAKKTTEFLKGKGKDIEVDAISATEGGKAIAAAAFDLYLVSPQT---K-MY-FKQFEEAGSKAGKP 77 (104)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCEEEECHHH---H-HH-HHHHHHHHHHCCCC
T ss_conf 5999968998799999999999997698369998488898876322688789988768---8-78-99999999872997
Q ss_pred EECCCC
Q ss_conf 001333
Q gi|254780893|r 75 VCILSG 80 (236)
Q Consensus 75 II~ls~ 80 (236)
|.++..
T Consensus 78 v~vI~~ 83 (104)
T PRK09590 78 VVQIPP 83 (104)
T ss_pred EEEECC
T ss_conf 788787
No 353
>pfam09936 DUF2168 Uncharacterized protein conserved in bacteria (DUF2168). This domain, found in various hypothetical prokaryotic proteins, has no known function. It is also found in a few prokaryotic tRNA (guanine-N(1)-)-methyltransferases.
Probab=47.59 E-value=15 Score=17.70 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=45.7
Q ss_pred EEEECCHHHHHHHHHH---CCCCEEEECCCC-CCCCCCCCCCCCC-CCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 9999998999999985---799478831149-8743343111222-2322331001333210000011232210111223
Q gi|254780893|r 27 VYVTDLGEDGIELCKF---YEFDAIILDLGL-TDIPGFEVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISK 101 (236)
Q Consensus 27 v~~a~~~~eal~~~~~---~~~DlvIlD~~l-p~~~G~~~~~~ir-~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~K 101 (236)
|..+.+.+++++.+.. ..|-++-.+... |+.-+++-++++- ......-++|-|+++=.++.+. ..||+..
T Consensus 84 v~~~~sle~ai~~i~~~~G~~p~vvaTsAr~~~~~is~~~lr~~i~~~~~P~LllFGTGwGL~~e~~~-----~~D~iLe 158 (185)
T pfam09936 84 VKVVSSLEEAIEDIEKRTGQRPLIVATSARKRPNTISYEELRKMIQEREKPVLLLFGTGWGLAPEVLE-----QADYVLE 158 (185)
T ss_pred HHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH-----HCCEEEC
T ss_conf 30060299999999996199977998047568997399999999844588189996587687799997-----4686670
Q ss_pred CCCC
Q ss_conf 3222
Q gi|254780893|r 102 PFNK 105 (236)
Q Consensus 102 P~~~ 105 (236)
|+..
T Consensus 159 PI~g 162 (185)
T pfam09936 159 PIRG 162 (185)
T ss_pred CCCC
T ss_conf 5636
No 354
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.48 E-value=23 Score=16.57 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=44.0
Q ss_pred CEEEEECCC-----HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH--------HCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 959998699-----89999999999988989999999899999998--------57994788311498743343111222
Q gi|254780893|r 1 MRILLIEDD-----KALAHSIELMLKSENFNVYVTDLGEDGIELCK--------FYEFDAIILDLGLTDIPGFEVLRALR 67 (236)
Q Consensus 1 mkILivedd-----~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~--------~~~~DlvIlD~~lp~~~G~~~~~~ir 67 (236)
|||.|+-.. ..++..+...|.+.|++|....+..+.+..+. ....|++|. -+.||--+ +..+
T Consensus 1 MKigIv~n~~k~~a~~~a~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----lGGDGT~L-~a~~ 75 (278)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSDTYEHLPQFSEEDVLPLEEFDVDFILA----IGGDGTIL-RIEH 75 (278)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEE----ECCCHHHH-HHHH
T ss_conf 999999218998999999999999998899899974786566655556767543578789999----87868999-9999
Q ss_pred CCCCCCCEECC
Q ss_conf 23223310013
Q gi|254780893|r 68 VAKISTPVCIL 78 (236)
Q Consensus 68 ~~~~~~pII~l 78 (236)
.....+||+-+
T Consensus 76 ~~~~~iPilGi 86 (278)
T PRK03708 76 KTKKEIPILSI 86 (278)
T ss_pred HCCCCCCEEEE
T ss_conf 64789988988
No 355
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=47.32 E-value=23 Score=16.55 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|+++...++.+.. -.| .|.++|.+.+ .....||.++++|-|+||...
T Consensus 119 ~Lp~~~R~vl~L~~-~eg--ls~~EIAe~L-----gis~~TVksrl~RAr~~Lr~~ 166 (190)
T PRK12516 119 QLPDDQREAIILIG-ASG--FAYEEAAEIC-----GCAVGTIKSRVSRARARLQEI 166 (190)
T ss_pred CCCHHHHHHHHHHH-HCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 19999989999899-829--9999999998-----949999999999999999999
No 356
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.29 E-value=23 Score=16.55 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCEEEEECC------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 9999999999988989999999------89999999857994788311498743343111222232233100133321
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDL------GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~------~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
.+...+...+++.||++..+.+ ..++++.+....+|-+|+--. ..+. +..+.+ ...+|++++....
T Consensus 16 ~i~~gie~~~~~~gy~~ll~~s~~~~~~e~~~i~~l~~~~vdGiIi~~~--~~~~-~~~~~~---~~~iPvV~i~~~~ 87 (265)
T cd06290 16 RILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG--DLPE-EEILAL---AEEIPVLAVGRRV 87 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCH-HHHHHH---HCCCCEEEECCCC
T ss_conf 9999999999986998999979999799999999999659998999268--8885-999998---5599989982567
No 357
>PRK10307 predicted glycosyl transferase; Provisional
Probab=47.13 E-value=23 Score=16.54 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=24.4
Q ss_pred CEEEEECCC--------HHHHHHHHHHHHHCCCEEEEE
Q ss_conf 959998699--------899999999999889899999
Q gi|254780893|r 1 MRILLIEDD--------KALAHSIELMLKSENFNVYVT 30 (236)
Q Consensus 1 mkILivedd--------~~~~~~l~~~L~~~g~~v~~a 30 (236)
||||++-+. ......|...|.+.||+|...
T Consensus 1 MrIl~vs~~y~P~~~G~~~~~~~La~~L~~~GheV~Vi 38 (415)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVI 38 (415)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 98999858489978879999999999999789989999
No 358
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=47.12 E-value=2.6 Score=22.32 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=44.8
Q ss_pred CCHHHHHHHH---HHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCCHH
Q ss_conf 9989999999---8579947883114987--433--------------------43111222232233100133321000
Q gi|254780893|r 31 DLGEDGIELC---KFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSSIE 85 (236)
Q Consensus 31 ~~~~eal~~~---~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~~~ 85 (236)
.+.+..++.+ .+.--|++=+.+-.++ -|| +++++.+|+.++.+||++++.++..-
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHH
T ss_conf 99899999999998679888996688888676688999989999977998899999999998618999889987011887
Q ss_pred ------CCCCCCCCCCCCCCCCCC
Q ss_conf ------001123221011122332
Q gi|254780893|r 86 ------DKVRGLQSGADDYISKPF 103 (236)
Q Consensus 86 ------~~~~al~~GAddyi~KP~ 103 (236)
..-++-++|+|..|.--.
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDL 131 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDL 131 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 735999999999759987985789
No 359
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=47.08 E-value=23 Score=16.53 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++.+..++.+.. -.| .|..||.+.+ ..+..||.++++|-|+||...
T Consensus 131 ~Lp~~~R~vl~L~~-~eg--~s~~EIA~~l-----gis~~tVKsrl~RAr~~Lr~~ 178 (197)
T PRK09643 131 RLPVEQRAALVAVD-MQG--YSVADTARML-----GVAEGTVKSRCARGRARLAEL 178 (197)
T ss_pred CCCHHHHHHHHHHH-HCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 69998879999999-819--9999999998-----939999999999999999999
No 360
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=46.82 E-value=24 Score=16.51 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEECC----HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 89999999999988989999999----89999999857994788311498743343111222232233100133321
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDL----GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~----~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
..+...+...+++.||.+..+.+ -++....+....+|-+|+- |..+--+....+. ...+|+|++....
T Consensus 26 ~~l~~gie~~~~~~gY~~li~~~~~~~e~~~~~~l~~~~vdGiIi~---~~~~~~~~~~~l~--~~~iPvV~~d~~~ 97 (275)
T cd06295 26 LSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILI---GQHDQDPLPERLA--ETGLPFVVWGRPL 97 (275)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHHH--HCCCCEEEECCCC
T ss_conf 9999999999998599899994898689999999984899889997---9989979999999--5799999998626
No 361
>PRK13140 consensus
Probab=46.62 E-value=16 Score=17.55 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=46.2
Q ss_pred ECCHHHHHH---HHHHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCCH
Q ss_conf 999899999---998579947883114987--433--------------------4311122223223310013332100
Q gi|254780893|r 30 TDLGEDGIE---LCKFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSSI 84 (236)
Q Consensus 30 a~~~~eal~---~~~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~~ 84 (236)
..|.+..++ .+...-.|++=+.+..++ .|| +++++++|+ .+++|++++|..+..
T Consensus 24 ~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~-~~~~pivlM~Y~N~i 102 (257)
T PRK13140 24 YPTLEDTVSIIKDLEKHGVDMIEIGIPFSDPLADGPVIQKSATQALKNGMTLKLLFEQLKDIRK-EVQIPLILMGYLNPI 102 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCCEEEEECHHHH
T ss_conf 8987999999999997599999978988987765899999999999869989999999999743-689888999055999
Q ss_pred ------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------00011232210111223322211
Q gi|254780893|r 85 ------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 85 ------~~~~~al~~GAddyi~KP~~~~e 107 (236)
...-+|-++|+|+.|.--..++|
T Consensus 103 ~~~G~e~F~~~~~~~GvdGlIipDLP~ee 131 (257)
T PRK13140 103 MQYGFEKFCKKCAETGIDGVIIPDLPFDD 131 (257)
T ss_pred HHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 85179999999998499869835998567
No 362
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=46.51 E-value=24 Score=16.48 Aligned_cols=119 Identities=23% Similarity=0.276 Sum_probs=63.1
Q ss_pred CEEEEECCCHHHHHHHH--HHHHHCC---C---EEEEE-CCHHHHHHHHHHCCCCEEEECCCCCCCCCC------CCCCC
Q ss_conf 95999869989999999--9999889---8---99999-998999999985799478831149874334------31112
Q gi|254780893|r 1 MRILLIEDDKALAHSIE--LMLKSEN---F---NVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGF------EVLRA 65 (236)
Q Consensus 1 mkILivedd~~~~~~l~--~~L~~~g---~---~v~~a-~~~~eal~~~~~~~~DlvIlD~~lp~~~G~------~~~~~ 65 (236)
|.|-.||=|+..-+.-+ ..|...+ | .|..+ .+.-+-+... ...||.+|.|..=|+.+.+ |+.+.
T Consensus 314 ~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~fD~vIVDl~DP~tps~~rlYS~eFY~l 392 (508)
T COG4262 314 EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADMFDVVIVDLPDPSTPSIGRLYSVEFYRL 392 (508)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHH-CCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 5278974388999873002676660367766875699965478899741-345557999689989951343210899999
Q ss_pred CCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22232233100133321000001123221011122332221111122222222----222222222222222222222
Q gi|254780893|r 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----SRGHAQSLIVTGDLSVNLDAK 139 (236)
Q Consensus 66 ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr----~~~~~~~~~~~g~~~~d~~~~ 139 (236)
++..-.+..++++-+ | .|+..++.-.||-+-+|. .-+..-.+.+||+|-|-....
T Consensus 393 l~~~l~e~Gl~VvQa-------------g------s~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 393 LSRHLAETGLMVVQA-------------G------SPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred HHHHCCCCCEEEEEC-------------C------CCCCCCCEEEEEHHHHHHCCCEEEEEEEECCCCCCCCEEECCC
T ss_conf 997337575499954-------------8------8765773011205478737625532489547655311255266
No 363
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=46.44 E-value=15 Score=17.77 Aligned_cols=73 Identities=23% Similarity=0.166 Sum_probs=52.3
Q ss_pred EEEECCHHHHHHHHHHCCCC-EEEECCCCCC--CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 99999989999999857994-7883114987--43343111222232233100133321000001123221011122
Q gi|254780893|r 27 VYVTDLGEDGIELCKFYEFD-AIILDLGLTD--IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 27 v~~a~~~~eal~~~~~~~~D-lvIlD~~lp~--~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~ 100 (236)
..+..++.+....+....+| +.|.|+.-.. .+-+++++++.+ ...+|+-+-.+-.+.++.-+.|+.|||-.+.
T Consensus 31 ~~~~~dP~~~a~~~~~~ga~~lhivDLda~~g~~~n~~~I~~i~~-~~~~pi~vGGGIrs~~~~~~~l~~Gadkvvi 106 (233)
T cd04723 31 LCSTSDPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAA-AWPLGLWVDGGIRSLENAQEWLKRGASRVIV 106 (233)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEC
T ss_conf 305879999999999879898999978654699753999999998-7899889970227699999998607201524
No 364
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=46.09 E-value=11 Score=18.40 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCC
Q ss_conf 99999998579947883114987-4334311122223223310013332100000112322101112
Q gi|254780893|r 34 EDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYI 99 (236)
Q Consensus 34 ~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi 99 (236)
.+-...+-+.-.|++++|..-.. ..-+++++.||...|++|||.- +-.+.+.....+++|||...
T Consensus 155 ~era~~Lv~AGvD~lvID~AhGhs~~~~e~ik~ik~~~p~v~VIaG-NVaT~~~a~~Li~aGAD~Vk 220 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGHSTRIIELVKTIKNKYPNLDLIAG-NIVTKEAALDLINVGADCLK 220 (404)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEC-CCCCHHHHHHHHHHCCCEEE
T ss_conf 9999999976999999968875217899999999976799616630-30579999999981989999
No 365
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=45.99 E-value=18 Score=17.29 Aligned_cols=68 Identities=22% Similarity=0.230 Sum_probs=26.1
Q ss_pred ECCHHHHHHHHHHCCCCEEEECCCCCCCC----CCCCCCCCCCC-CCCCCEECCCCCCCHHCCCCCCCCCCCC
Q ss_conf 99989999999857994788311498743----34311122223-2233100133321000001123221011
Q gi|254780893|r 30 TDLGEDGIELCKFYEFDAIILDLGLTDIP----GFEVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADD 97 (236)
Q Consensus 30 a~~~~eal~~~~~~~~DlvIlD~~lp~~~----G~~~~~~ir~~-~~~~pII~ls~~~~~~~~~~al~~GAdd 97 (236)
....+++...+..+.=-+.|...+--.++ .|+.+..+-+. +..+||+|=|+--.-+++.+||.+|||-
T Consensus 237 ~Q~~ED~~~al~AGASGIWV~NHG~RQl~~~PaaFD~L~~vAE~V~~rVPIVFDSGvRRG~Hv~KALASGAD~ 309 (368)
T TIGR02708 237 PQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADL 309 (368)
T ss_pred CCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 8886689999972886257604775023678752000699999852855668508843257899987235644
No 366
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=45.93 E-value=24 Score=16.42 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=14.7
Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHH----HHHCCCCEEEEC
Q ss_conf 9999999889899999998999999----985799478831
Q gi|254780893|r 15 SIELMLKSENFNVYVTDLGEDGIEL----CKFYEFDAIILD 51 (236)
Q Consensus 15 ~l~~~L~~~g~~v~~a~~~~eal~~----~~~~~~DlvIlD 51 (236)
.+....+..++.++...+..+.++. +...-|.+-|..
T Consensus 37 ~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g 77 (171)
T cd06533 37 ALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVG 77 (171)
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999986497499980898999999999997889937999
No 367
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=45.87 E-value=25 Score=16.42 Aligned_cols=68 Identities=16% Similarity=-0.016 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 999999999988989999-------9998999999985799478831149874334311122223223310013332
Q gi|254780893|r 12 LAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 12 ~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
+.+.+...+++.|.+|.. ..+....+..+....||+|++-.. ..++..+++..|+.+...|++..++.
T Consensus 152 ~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~i~~i~~~~pD~v~~~~~--~~~~~~~~~q~~~~G~~~~~~g~~~~ 226 (334)
T cd06347 152 LAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGY--YTEVGLIAKQARELGIKVPILGGDGW 226 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9999999999759748999715888887699999998659999999366--16799999999976997769974466
No 368
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.70 E-value=25 Score=16.40 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCC-CCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999999999889899999998------999999985799478831149874-334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDI-PGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~-~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+++.||++..+.+. .++++.+....+|.+|+- |.. +..+..+.+. ...+|++++...
T Consensus 16 ~~~~gi~~~a~~~gy~lll~~t~~~~~~e~~~i~~l~~~~vDGiIi~---~~~~~~~~~~~~l~--~~~iPvV~i~~~ 88 (268)
T cd06289 16 ELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILC---PAAGTSPDLLKRLA--ESGIPVVLVARE 88 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCCHHHHHHHH--HCCCCEEEECCC
T ss_conf 99999999999869989999589998999999999996599989994---68889999999999--759989983676
No 369
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=45.41 E-value=13 Score=18.13 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 99899999998579947883114987-433431112222322331001333210000011232210111
Q gi|254780893|r 31 DLGEDGIELCKFYEFDAIILDLGLTD-IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDY 98 (236)
Q Consensus 31 ~~~~eal~~~~~~~~DlvIlD~~lp~-~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddy 98 (236)
.+..+=.+.+-+.-.|++++|.-... ..-++.++.||+..|.++||.-- -...+......++|||..
T Consensus 226 ~d~~eR~~aLv~AGvDvlvIDtAHGhS~~vi~~vk~iK~~~p~~~viaGN-vaT~~~a~~Li~aGad~i 293 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVIDTAHGHQEKMLEAIRAVRALDPGVPLVAGN-VVTAEGTRDLVEAGADIV 293 (479)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-HHHHHHHHHHHHCCCCEE
T ss_conf 45899999999769989997545766489999999998408988578743-202999999997399976
No 370
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=45.04 E-value=25 Score=16.34 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|++++-.++.+..-. | .|..+|.+.+ ..+..||.++++|-|++|..
T Consensus 131 ~Lp~~~R~vi~L~~~~-g--~s~~EIA~~l-----gis~~tVk~~l~RA~~~Lr~ 177 (184)
T PRK12512 131 TLPPRQRDVVQSIAVE-G--ASIKETAAKL-----SMSEGAVRVALHRGLAALAA 177 (184)
T ss_pred CCCHHHHHHHHHHHHC-C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999855-9--7999999998-----91999999999999999999
No 371
>PRK13122 consensus
Probab=44.91 E-value=23 Score=16.54 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCHH------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43111222232233100133321000------001123221011122332221
Q gi|254780893|r 60 FEVLRALRVAKISTPVCILSGMSSIE------DKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 60 ~~~~~~ir~~~~~~pII~ls~~~~~~------~~~~al~~GAddyi~KP~~~~ 106 (236)
+++++++|. ...+|++++|.++... ..-+|-++|+|+.|.--..++
T Consensus 64 ~~~l~~~r~-~~~~pivlM~Y~N~i~~~G~~~F~~~~~~~GvdGvIipDLP~e 115 (242)
T PRK13122 64 FNQLEKHGD-QIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYE 115 (242)
T ss_pred HHHHHHHCC-CCCCCEEEEEECHHHHHHCHHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 999997313-6798779998516988727999999998769986777899878
No 372
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=44.90 E-value=13 Score=18.04 Aligned_cols=15 Identities=7% Similarity=0.465 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 366789998851106
Q gi|254780893|r 190 IDVFICKLRKKLSNA 204 (236)
Q Consensus 190 ld~~I~rLRkKL~~~ 204 (236)
.+.++.-++.+|...
T Consensus 319 ~~~~~~d~~~~l~~~ 333 (402)
T PRK10966 319 TDDYLSDIQRRIQAL 333 (402)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 687507799999998
No 373
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=44.89 E-value=25 Score=16.32 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=51.4
Q ss_pred CEEEEECC-C-------HHHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCEEEECCCC-CCCCCCCCCCCCCCC
Q ss_conf 95999869-9-------8999999999998898999999--98999999985799478831149-874334311122223
Q gi|254780893|r 1 MRILLIED-D-------KALAHSIELMLKSENFNVYVTD--LGEDGIELCKFYEFDAIILDLGL-TDIPGFEVLRALRVA 69 (236)
Q Consensus 1 mkILived-d-------~~~~~~l~~~L~~~g~~v~~a~--~~~eal~~~~~~~~DlvIlD~~l-p~~~G~~~~~~ir~~ 69 (236)
|||++-=| . ..-+..|...|...|++|..+. +.......+....+.+..++-.. ...+..++...++..
T Consensus 1 mkI~fr~d~~~~iG~GH~~RclaLA~~l~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
T TIGR03590 1 MRILFRADASSEIGLGHVMRCLTLARELRKRGAEVAFACKTLPGDLIDLILSAGFPVYVLPDTSSWQDDALELINLLEKE 80 (280)
T ss_pred CEEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 97999996789913208999999999999889949999927958899999975981798167565201299999999737
Q ss_pred CCCCCEECCCCCCCHHCCCCCCC------CCCCCCCCCCCCCCCC
Q ss_conf 22331001333210000011232------2101112233222111
Q gi|254780893|r 70 KISTPVCILSGMSSIEDKVRGLQ------SGADDYISKPFNKEEL 108 (236)
Q Consensus 70 ~~~~pII~ls~~~~~~~~~~al~------~GAddyi~KP~~~~eL 108 (236)
.+. ++++-.+.-...-...+. .-.||+-.+|+..+-+
T Consensus 81 ~~d--~vIiD~y~~~~~~~~~lk~~~~~~i~iDD~~~~~~~~d~v 123 (280)
T TIGR03590 81 KFD--ILIVDHYALDADWEKLIKHFGRKLLVIDDLADRPHDCDLL 123 (280)
T ss_pred CCC--EEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCEE
T ss_conf 979--9999259999799999998398399993676546561425
No 374
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=44.66 E-value=26 Score=16.30 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=30.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCC
Q ss_conf 95999869989999999999988989999999899999998579
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE 44 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~ 44 (236)
|||+|+-- -.+...+...|...|++|.....++. ++.+..+-
T Consensus 1 MkI~I~Ga-GAiG~~~a~~L~~~g~~V~lv~r~~~-~~~i~~~G 42 (306)
T PRK12921 1 MKIAVVGA-GAVGGTFGARLLEAGRDVTFLGRSAR-AEALREKG 42 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHCC
T ss_conf 98999992-49999999999836998899970009-99999789
No 375
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=44.50 E-value=26 Score=16.29 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEC
Q ss_conf 224641168899987189973789999998718877777530366789998851106788843888878202645
Q gi|254780893|r 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 (236)
Q Consensus 148 i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~ 222 (236)
..|+..+.+.+..|++ .+.+.+-++|.+.+=- =++-|+|-=++|-..+-...-=.+.+|-||++-
T Consensus 23 ~GLs~~Dv~v~~~LL~-~~~~~tvdelae~lnr---------~rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~yi 87 (126)
T COG3355 23 YGLSELDVEVYKALLE-ENGPLTVDELAEILNR---------SRSTVYRSLQNLLEAGLVEREKVNLKGGGYYYL 87 (126)
T ss_pred HCCCHHHHHHHHHHHH-HCCCCCHHHHHHHHCC---------CHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEE
T ss_conf 3896889999999986-4699579999999783---------199999999999985886666422678861488
No 376
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=44.45 E-value=26 Score=16.28 Aligned_cols=48 Identities=13% Similarity=0.247 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|+++...++.+-.- .| .|..+|.+.+ ..+..||.++++|-|++|...
T Consensus 136 ~Lp~~~R~vi~L~~~-eg--~s~~EIA~~l-----gis~~tVk~~l~Rark~Lr~~ 183 (196)
T PRK12524 136 ALPERQRQAVVLRHI-EG--LSNPEIAEVM-----QIGVEAVESLTARGKRALAAL 183 (196)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 599999999899998-08--9999999998-----929999999999999999999
No 377
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=44.12 E-value=26 Score=16.25 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=26.6
Q ss_pred CEEEEECCCH--HHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9599986998--999999999998898999999
Q gi|254780893|r 1 MRILLIEDDK--ALAHSIELMLKSENFNVYVTD 31 (236)
Q Consensus 1 mkILivedd~--~~~~~l~~~L~~~g~~v~~a~ 31 (236)
|||.|-.|+. .+.+.|..+|++.||+|.-..
T Consensus 1 MKI~IgsDHaG~~LK~~i~~~L~~~G~eV~D~G 33 (171)
T PRK12615 1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCG 33 (171)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 979999686159999999999998899789779
No 378
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.10 E-value=26 Score=16.25 Aligned_cols=66 Identities=14% Similarity=0.276 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECC-----HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 9999999999988989999999-----8999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDL-----GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~-----~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+++.||.+..+.+ .++.+..+....+|-+|+- +....-+..+.+. ...+|++++...
T Consensus 16 ~i~~gie~~~~~~gy~~ll~~~~~~~~~e~~l~~l~~~~vDGiIi~---~~~~~~~~~~~~~--~~~iPvV~i~~~ 86 (266)
T cd06278 16 ELLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVT---SGTLSSELAEECR--RNGIPVVLINRY 86 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHHH--HCCCCEEEECCC
T ss_conf 9999999999986999999979998899999999995599999994---8989999999999--769989997876
No 379
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=43.91 E-value=26 Score=16.23 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=26.7
Q ss_pred CEEEEECCCH--HHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9599986998--999999999998898999999
Q gi|254780893|r 1 MRILLIEDDK--ALAHSIELMLKSENFNVYVTD 31 (236)
Q Consensus 1 mkILivedd~--~~~~~l~~~L~~~g~~v~~a~ 31 (236)
|||.|-.|+. .+-+.|..+|+..||+|.-..
T Consensus 1 MkI~IgsDHaG~~lK~~l~~~L~~~g~ev~D~g 33 (142)
T PRK08621 1 MAIIIGADKAGFELKEVIKDYLEDNKYEVVDVT 33 (142)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 979998587369999999999997899879799
No 380
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=43.91 E-value=26 Score=16.23 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHC
Q ss_conf 9999999998898-9999999899999998579947883114987433431112222322331001333210000
Q gi|254780893|r 13 AHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIED 86 (236)
Q Consensus 13 ~~~l~~~L~~~g~-~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~ 86 (236)
+..++..+..+.= +|..+++-++.-+.+...+|++|+ |-.+=|++- ...++|.+++|+..=.++
T Consensus 347 a~wvr~~~~gY~dGEvlv~ddf~~v~~~I~~~~P~lv~---------GTQMERH~~-kRldiPC~VISaP~HI~N 411 (562)
T TIGR01278 347 ADWVREQVAGYVDGEVLVTDDFQEVADAIAALEPELVL---------GTQMERHVA-KRLDIPCMVISAPTHIQN 411 (562)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEE---------CCCHHHHHH-HHCCCCCEEECCCHHHHH
T ss_conf 99999998303882488825358899999860852010---------564256777-663898302288621230
No 381
>PRK01581 speE spermidine synthase; Validated
Probab=43.86 E-value=26 Score=16.23 Aligned_cols=125 Identities=15% Similarity=0.111 Sum_probs=61.8
Q ss_pred EEEEECCCHHHHHHHHHH--HHHCC---C---EEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCC------CCCCCC
Q ss_conf 599986998999999999--99889---8---999-99998999999985799478831149874334------311122
Q gi|254780893|r 2 RILLIEDDKALAHSIELM--LKSEN---F---NVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGF------EVLRAL 66 (236)
Q Consensus 2 kILivedd~~~~~~l~~~--L~~~g---~---~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~------~~~~~i 66 (236)
+|-+||=|+.+-...+.. |.+.+ + .|. ...++-+.+.. ....||+||+|..=|+..++ ++-+.+
T Consensus 165 ~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~-~~~~FDvIIVDlPDP~n~~L~KLYS~eFY~Ll 243 (363)
T PRK01581 165 HVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSS-PSSLYDVIIIDFPDPATELLSTLYTSELFARI 243 (363)
T ss_pred EEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 27899569999998751979987512001498049992108999861-67544289995899986246667359999999
Q ss_pred CCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 223223310013332100000112322101112233222111----1122222222222222222222-22222222222
Q gi|254780893|r 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL----VARIRAIVRRSRGHAQSLIVTG-DLSVNLDAKTV 141 (236)
Q Consensus 67 r~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL----~ari~~llrr~~~~~~~~~~~g-~~~~d~~~~~v 141 (236)
+..-..-.++++-+-+ |+..+.- ...+++.-=...+....+.+|| +|-|..+++.-
T Consensus 244 ~~~La~dG~~vVQSTS-------------------PyfApkaFWsI~~Tl~aAGl~t~pYHv~VPSFG~eWGF~IAs~s~ 304 (363)
T PRK01581 244 ATFLTEDGAFVCQSNS-------------------PADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSA 304 (363)
T ss_pred HHHCCCCCEEEEEECC-------------------CCCCCCCEEEHHHHHHHCCCCCCCCEECCCCCCCCCCCEEECCCH
T ss_conf 9861988539996079-------------------765762336777779873675413420688886434611122507
Q ss_pred CCCCC
Q ss_conf 33333
Q gi|254780893|r 142 EVQGH 146 (236)
Q Consensus 142 ~~~g~ 146 (236)
+.-++
T Consensus 305 ~vl~~ 309 (363)
T PRK01581 305 YVLDQ 309 (363)
T ss_pred HHHHH
T ss_conf 88875
No 382
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=43.80 E-value=26 Score=16.22 Aligned_cols=53 Identities=30% Similarity=0.157 Sum_probs=36.4
Q ss_pred CEEEEECCCH--HHHHHHHHHHHHCCCEEEEE--CCHH----------HHHHHHHHCCCCEEEECCC
Q ss_conf 9599986998--99999999999889899999--9989----------9999998579947883114
Q gi|254780893|r 1 MRILLIEDDK--ALAHSIELMLKSENFNVYVT--DLGE----------DGIELCKFYEFDAIILDLG 53 (236)
Q Consensus 1 mkILivedd~--~~~~~l~~~L~~~g~~v~~a--~~~~----------eal~~~~~~~~DlvIlD~~ 53 (236)
|||.|.-|+. .+.+.+..+|++.||+|+-+ .+.+ .....+..+..|+.|+=+.
T Consensus 1 MkIaig~Dhag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCG 67 (151)
T COG0698 1 MKIAIGSDHAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICG 67 (151)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9279974753377999999999978977996366478777550899999999997478774699815
No 383
>PRK13133 consensus
Probab=43.71 E-value=17 Score=17.30 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=45.0
Q ss_pred ECCHHHHHHHH---HHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCC----CCCCCCEECCCC
Q ss_conf 99989999999---8579947883114987--433--------------------431112222----322331001333
Q gi|254780893|r 30 TDLGEDGIELC---KFYEFDAIILDLGLTD--IPG--------------------FEVLRALRV----AKISTPVCILSG 80 (236)
Q Consensus 30 a~~~~eal~~~---~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~----~~~~~pII~ls~ 80 (236)
..|.+..++.+ ...-.|++=+.+..++ .|| +++++++|. ..+++|++++|.
T Consensus 25 ~P~~~~t~~~i~~l~~~GaDiiElGiPFSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~~~~~PivlMtY 104 (267)
T PRK13133 25 FPVAGATLPVLEALQESGADIIELGIPYSDPIGDGPVIQNAAHTAIRNGVSVRSLLELVRKARNGEGCRKITVPILLMGY 104 (267)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEHHH
T ss_conf 99989999999999975999899789988866668999999999998699899999999999730243466877871564
Q ss_pred CCCHH------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21000------001123221011122332221
Q gi|254780893|r 81 MSSIE------DKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 81 ~~~~~------~~~~al~~GAddyi~KP~~~~ 106 (236)
++... ..-+|-++|+|..|.--.-++
T Consensus 105 ~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~e 136 (267)
T PRK13133 105 CNPLIAYGGDCFLADAVKAGVDGLLIPDLPPE 136 (267)
T ss_pred HHHHHHHCHHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 57999847799999999869878877899968
No 384
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=43.43 E-value=27 Score=16.19 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=17.2
Q ss_pred HHHHHHHHHH--HCCCEEE--EECCHHHHHHHHHHCCCCEEEECC
Q ss_conf 9999999999--8898999--999989999999857994788311
Q gi|254780893|r 12 LAHSIELMLK--SENFNVY--VTDLGEDGIELCKFYEFDAIILDL 52 (236)
Q Consensus 12 ~~~~l~~~L~--~~g~~v~--~a~~~~eal~~~~~~~~DlvIlD~ 52 (236)
+++.|...|. -.|..|- .|.+|.=+++++..+.-.++.+|.
T Consensus 39 vREalFn~L~~~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~ 83 (198)
T PRK10909 39 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEM 83 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 999999875764299879982777468899999879978999978
No 385
>PRK13136 consensus
Probab=43.22 E-value=23 Score=16.64 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=43.3
Q ss_pred CCHHHH---HHHHHHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCCHH
Q ss_conf 998999---99998579947883114987--433--------------------43111222232233100133321000
Q gi|254780893|r 31 DLGEDG---IELCKFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSSIE 85 (236)
Q Consensus 31 ~~~~ea---l~~~~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~~~ 85 (236)
.+.+.. +..+.+.-.|++=+.+..++ .|| +++++.+|+ .+++|++++|.++...
T Consensus 23 P~~e~s~~~~~~l~~~G~DiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~v~~~r~-~~~~pivlM~Y~N~i~ 101 (253)
T PRK13136 23 GGLERSLESLLALAKGGVNILEVGVPFSDPVADGPVIQEASIRALAQGTTLHDVLTLITSFRQ-HSEIPIILFTYFNPLL 101 (253)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCCCEEEECCCHHHH
T ss_conf 998999999999996599989978998886665799999999999869979999999998225-7898889986517999
Q ss_pred -----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----001123221011122332221
Q gi|254780893|r 86 -----DKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 86 -----~~~~al~~GAddyi~KP~~~~ 106 (236)
..-++-++|+|..|.--.-++
T Consensus 102 ~~G~~f~~~~~~~GvdGlIipDLP~e 127 (253)
T PRK13136 102 AAGDKIYQQMKSAGVDGCLVVDLPVE 127 (253)
T ss_pred HHHHHHHHHHHHCCCCCEECCCCCHH
T ss_conf 97999999999749872006789977
No 386
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=43.14 E-value=27 Score=16.16 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++....++.+.. -.| .|..+|.+.+ ..+..||.++++|-|++|...
T Consensus 112 ~Lp~~~r~v~~L~~-~~g--~s~~EIA~~l-----gis~~tVksrl~rAr~~Lr~~ 159 (164)
T PRK12547 112 LLPADQREAIILIG-ASG--FSYEEAAEIC-----GCAVGTIKSRVSRARNRLQEL 159 (164)
T ss_pred HCCHHHHHHHHHHH-HCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 58999999999899-849--9999999998-----939999999999999999999
No 387
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=43.06 E-value=19 Score=17.09 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999999889
Q gi|254780893|r 12 LAHSIELMLKSEN 24 (236)
Q Consensus 12 ~~~~l~~~L~~~g 24 (236)
-+..|...|+..|
T Consensus 8 r~~~lv~qLr~~g 20 (213)
T PRK00312 8 RFAALVERLRAEG 20 (213)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999869
No 388
>PRK13137 consensus
Probab=42.90 E-value=18 Score=17.25 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=47.0
Q ss_pred CEEEEECCHHHHHHHHHH--CCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCC
Q ss_conf 899999998999999985--79947883114987--433--------------------431112222322331001333
Q gi|254780893|r 25 FNVYVTDLGEDGIELCKF--YEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 25 ~~v~~a~~~~eal~~~~~--~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~ 80 (236)
|-+-...|.+..++.+.. ..-|++=+.+..++ -|| +++++.+|.. ..+||++++.
T Consensus 30 yitaG~P~~~~s~~~~~~l~~gaDiiElGiPFSDP~ADGPvIQ~A~~~AL~~G~~l~~~l~~~~~~r~~-~~~PivlM~Y 108 (266)
T PRK13137 30 FLTAGYPSAAGFLQVAEELLAYADLLEVGIPYSDPLGDGPTIQRASEQALAGGTSTRRTLELVRELRAL-TDTPLVIMTY 108 (266)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCEEEEEC
T ss_conf 866818887899999999973899899789988856657999999999997798677899999975556-8987899934
Q ss_pred CCCH------HCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2100------0001123221011122332221
Q gi|254780893|r 81 MSSI------EDKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 81 ~~~~------~~~~~al~~GAddyi~KP~~~~ 106 (236)
++.. ...-++-++|+|..|.-...++
T Consensus 109 ~N~i~~yG~e~F~~~a~~aGvdGlIipDLP~e 140 (266)
T PRK13137 109 LNPIYAVGPEEFMRLFQEAGVDGLILPDLPPD 140 (266)
T ss_pred HHHHHHHCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 58998758999999999769609994799978
No 389
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=42.83 E-value=9.4 Score=18.94 Aligned_cols=45 Identities=20% Similarity=0.062 Sum_probs=25.8
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEE-E---CCHHHHHHHHHHCCCCEEE
Q ss_conf 9869989999999999988989999-9---9989999999857994788
Q gi|254780893|r 5 LIEDDKALAHSIELMLKSENFNVYV-T---DLGEDGIELCKFYEFDAII 49 (236)
Q Consensus 5 ivedd~~~~~~l~~~L~~~g~~v~~-a---~~~~eal~~~~~~~~DlvI 49 (236)
+--++...+..+...|-+.|+.+.. . .+..++++.+...-+|++|
T Consensus 10 lr~~~~~~a~~~~~al~~~Gi~~iEitl~t~~a~~~i~~l~~~~~~~~i 58 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALI 58 (190)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEE
T ss_conf 9779999999999999986998899967880299999999986898089
No 390
>TIGR00069 hisD histidinol dehydrogenase; InterPro: IPR001692 Histidinol dehydrogenase (1.1.1.23 from EC) (HDH) catalyses the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His . The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules . By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme . A Cys residue has been implicated in the catalytic mechanism of the second oxidative step . In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast .; GO: 0004399 histidinol dehydrogenase activity, 0000105 histidine biosynthetic process.
Probab=42.64 E-value=24 Score=16.50 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCC
Q ss_conf 99999999998898999999989999999857994788311498743343111222232233100133321000001123
Q gi|254780893|r 12 LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGL 91 (236)
Q Consensus 12 ~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al 91 (236)
-++.+.+.|+.+| .++.+.+..+|++..++.-|.-+++= -.|..+++..|+..+ =|||..++-.. +==+
T Consensus 296 R~ei~r~~l~~y~-~i~l~~~l~ea~E~sN~YAPEHL~i~----t~np~~~l~~i~nAG----siFLG~ySP~s--~GDY 364 (435)
T TIGR00069 296 RAEIVRKALESYG-RIVLTEDLEEAVEISNEYAPEHLIIL----TKNPEELLGKIDNAG----SIFLGEYSPES--AGDY 364 (435)
T ss_pred HHHHHHHHHHHCC-EEEEEHHHHHHHHHHHCCCCHHHHHH----HCCHHHHHHHHHHCC----EEEECCCCCCC--CCCC
T ss_conf 7999999987539-37861028999998624230568898----606787740011033----13545767555--4547
Q ss_pred CCCCCCCC
Q ss_conf 22101112
Q gi|254780893|r 92 QSGADDYI 99 (236)
Q Consensus 92 ~~GAddyi 99 (236)
.+|.+-.|
T Consensus 365 aSGTNHVL 372 (435)
T TIGR00069 365 ASGTNHVL 372 (435)
T ss_pred CCCCCCCC
T ss_conf 78887657
No 391
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.59 E-value=28 Score=16.11 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99999999988989999-------99989999999857994788311498743343111222232233100
Q gi|254780893|r 13 AHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVC 76 (236)
Q Consensus 13 ~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII 76 (236)
...+...+++.|.+|.. ..|....+..+....||+|++-.. ..++..+++.+|+.+...+++
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~~--~~~~~~~~kq~~~~G~~~~~~ 229 (347)
T cd06340 161 AEAIKKFAKERGFEIVEDISYPANARDLTSEVLKLKAANPDAILPASY--TNDAILLVRTMKEQRVEPKAV 229 (347)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHHCCCCCCEE
T ss_conf 999999999739879999972788776699999998669999999067--627999999999769997658
No 392
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=42.54 E-value=25 Score=16.31 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|+++.-.++.+-.- -| .|..+|.+.+ ..+.+||+++++|-|++|...
T Consensus 106 ~Lp~~~R~v~~L~~~-e~--~s~~EIA~~l-----~is~~tVk~~l~RArk~Lkk~ 153 (160)
T PRK09642 106 ELPENYRDVVLAHYL-EE--KSYQEIALQE-----NIEVKTVEMKLYRARKWIKKH 153 (160)
T ss_pred HCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 799999999799998-29--9999999998-----919999999999999999999
No 393
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=42.16 E-value=17 Score=17.33 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=7.1
Q ss_pred HCCCCCCCCCCCCCCC
Q ss_conf 0001123221011122
Q gi|254780893|r 85 EDKVRGLQSGADDYIS 100 (236)
Q Consensus 85 ~~~~~al~~GAddyi~ 100 (236)
++..+|.+.|||.-++
T Consensus 233 eDA~~A~~~G~dgIvV 248 (351)
T cd04737 233 EDADVAINAGADGIWV 248 (351)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999998749988997
No 394
>COG1386 scpB Chromosome segregation and condensation protein B [DNA replication, recombination and repair]
Probab=42.14 E-value=28 Score=16.07 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE-----CCCEEEE
Q ss_conf 2246411688999871899737899999987188777775303667899988511067888438888-----7820264
Q gi|254780893|r 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV-----WGRGYVL 221 (236)
Q Consensus 148 i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tv-----rG~GY~l 221 (236)
-+||+.+.+.|.+.+- .|+|||.+| +.+.|.+ .+.+|+.|+.+ .+|+.+ .|..|.+
T Consensus 88 ~~LSraalEtLAiIAY--~QPiTR~eI-~~iRGv~-------~~~~i~~L~e~--------glI~~~g~~~~~Grp~ly 148 (184)
T COG1386 88 RELSRAALETLAIIAY--KQPVTRSEI-EEIRGVA-------VSQVISTLLER--------GLIREVGRRDTPGRPYLY 148 (184)
T ss_pred CCCCHHHHHHHHHHHH--CCCCCHHHH-HHHHCCC-------HHHHHHHHHHC--------CCEEEECCCCCCCCCEEE
T ss_conf 4024999999999998--287249999-9980866-------78999999978--------786751777899987464
No 395
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.10 E-value=28 Score=16.06 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCEECCCCC
Q ss_conf 999999999998898999999989------9999998579947883114987433431112222-3223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLGE------DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRV-AKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~~------eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~-~~~~~pII~ls~~ 81 (236)
.+...++..+++.||++..+.+.. +.++.+-.+.+|.+|+-.. +.-.+...+.+ ....+|+|++-..
T Consensus 16 ~v~~gie~~a~~~G~~~~i~~s~~d~~~q~~~i~~li~~~vDgiIi~p~----~~~~~~~~~~~~~~~gIPvV~~d~~ 89 (267)
T cd06322 16 ELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV----DSKGIRAAIAKAKKAGIPVITVDIA 89 (267)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC----CCCHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999999999974999999839999999999999999749999999067----6101069999999759978998346
No 396
>PRK13129 consensus
Probab=42.09 E-value=21 Score=16.81 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=46.6
Q ss_pred EECCHHHHHH---HHHHCCCCEEEECCCCCC--CCC--------------------CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 9999899999---998579947883114987--433--------------------431112222322331001333210
Q gi|254780893|r 29 VTDLGEDGIE---LCKFYEFDAIILDLGLTD--IPG--------------------FEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 29 ~a~~~~eal~---~~~~~~~DlvIlD~~lp~--~~G--------------------~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
...|.+..++ .+...-.|++=+.+..++ -|| +++++++|+. .++|++++|.++.
T Consensus 28 G~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~-~~~PivlM~Y~N~ 106 (267)
T PRK13129 28 GDPDLETTAEALLILQENGADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVLEMLESLKGK-LTIPIILFTYYNP 106 (267)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCEEEEEEHHH
T ss_conf 189989999999999977999999799888877658999999999997698789999999985434-7888899861078
Q ss_pred H------HCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------00011232210111223322211
Q gi|254780893|r 84 I------EDKVRGLQSGADDYISKPFNKEE 107 (236)
Q Consensus 84 ~------~~~~~al~~GAddyi~KP~~~~e 107 (236)
. ...-+|-++|+|+.|.--.-++|
T Consensus 107 i~~~G~e~F~~~~~~~GvdGvIipDLP~eE 136 (267)
T PRK13129 107 LLNRGMERFCEQAAAAGVAGLVVPDLPLEE 136 (267)
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 988559999999986698757678999899
No 397
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=42.07 E-value=28 Score=16.06 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEE-CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 899999999999889899999998------99999998579947883-11498743343111222232233100133321
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIIL-DLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIl-D~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
..+...+...+++.||++..+.+. .+.++.+....+|.+|+ +...+ -.... .....+|++++....
T Consensus 15 ~~~~~gi~~~~~~~gy~~~i~~s~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~----~~~~~---~~~~~~PvV~i~~~~ 87 (267)
T cd06284 15 SEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLP----PTALT---ALAKLPPIVQACEYI 87 (267)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCC----HHHHH---HHHCCCCEEEECCCC
T ss_conf 99999999999986998999978999899999999998479985998278899----99999---984799999986778
No 398
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=41.91 E-value=28 Score=16.04 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCEEE--EEC-CHHHHHHHHHH---CCCCEEEECCCCCCCC-CCCCCCCCCCCCCCCCEECC
Q ss_conf 99999999998898999--999-98999999985---7994788311498743-34311122223223310013
Q gi|254780893|r 12 LAHSIELMLKSENFNVY--VTD-LGEDGIELCKF---YEFDAIILDLGLTDIP-GFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 12 ~~~~l~~~L~~~g~~v~--~a~-~~~eal~~~~~---~~~DlvIlD~~lp~~~-G~~~~~~ir~~~~~~pII~l 78 (236)
+-..|+..|-++||.|. +.. |.+.+.++..+ ..||+.+...+..+.+ .-+.++++.+.- -||=+|
T Consensus 12 IGtAIC~rL~~dG~~V~An~~p~N~~~a~~W~~~~~~~g~~~~~~~~DV~~~e~c~~~v~~v~a~l--GpvDvL 83 (244)
T TIGR01829 12 IGTAICTRLAKDGYRVAANYVPSNEERAEAWLQEQGAQGFDFAVVEGDVSSFEDCKAAVAKVEAEL--GPVDVL 83 (244)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEE
T ss_conf 468999999875988988178982589999998626985147898727677789999999999711--953689
No 399
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.82 E-value=28 Score=16.08 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=6.0
Q ss_pred CCCCEEEECCCC
Q ss_conf 799478831149
Q gi|254780893|r 43 YEFDAIILDLGL 54 (236)
Q Consensus 43 ~~~DlvIlD~~l 54 (236)
.-.-+.++|..+
T Consensus 85 ~G~rVlliDaD~ 96 (265)
T COG0489 85 LGKRVLLLDADL 96 (265)
T ss_pred CCCEEEEEECCC
T ss_conf 399389996746
No 400
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=41.72 E-value=28 Score=16.03 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=26.2
Q ss_pred CEEEEECCCH--HHHHHHHHHHHHCCCEEEEE
Q ss_conf 9599986998--99999999999889899999
Q gi|254780893|r 1 MRILLIEDDK--ALAHSIELMLKSENFNVYVT 30 (236)
Q Consensus 1 mkILivedd~--~~~~~l~~~L~~~g~~v~~a 30 (236)
|||.|-.|+. .+-+.+..+|++.||+|.-.
T Consensus 1 MkI~igsDHaG~~lK~~i~~~L~~~g~~v~D~ 32 (141)
T PRK12613 1 MAIILGADAHGNALKELIKSFLQEEGYDIIDV 32 (141)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 98999958724999999999999879986807
No 401
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=41.55 E-value=29 Score=16.01 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECC------HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 9999999999988989999999------8999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDL------GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~------~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+++.||.+..+.+ ..++++.+....+|.+|+-..+|..+ +....+. ...+|++++...
T Consensus 78 ~l~~~i~~~~~~~gy~~li~~s~~~~~~e~~~~~~l~~~~vdgiIv~~~~~~~~--~~~~~l~--~~~iPvV~i~~~ 150 (330)
T PRK11303 78 RIAKLLEQQARQRGYQLLIACSDDQPDNEMQCAEHLLQRQVDALIVATSLPPEH--PFYQRLQ--NDGFPIIALDRA 150 (330)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHH--HCCCCEEEECCC
T ss_conf 888999999996698799994799989999999999974899899946888862--9999998--469978997256
No 402
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=41.43 E-value=29 Score=16.00 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=59.4
Q ss_pred CEEEEECCC--HHHHHHHHHHHHHCCCEEEEECC-----------HHHHHHHHHHCCCCEEEECCCCC--------CCCC
Q ss_conf 959998699--89999999999988989999999-----------89999999857994788311498--------7433
Q gi|254780893|r 1 MRILLIEDD--KALAHSIELMLKSENFNVYVTDL-----------GEDGIELCKFYEFDAIILDLGLT--------DIPG 59 (236)
Q Consensus 1 mkILivedd--~~~~~~l~~~L~~~g~~v~~a~~-----------~~eal~~~~~~~~DlvIlD~~lp--------~~~G 59 (236)
|||.|-.|+ ..+.+.|..+|+..||+|.-..+ +..+-..+..+..|.-|+=++.. ...|
T Consensus 1 MKI~IgsDHaG~eLKe~l~~~L~~~G~eV~D~G~~~~~~~DYPd~a~~va~~V~~~~~~~GIliCGTGiGmsiaANK~~G 80 (171)
T PRK08622 1 MKIAIGCDHIVTDEKMAVSDFLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGINNAVNKVPG 80 (171)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCC
T ss_conf 97999848606999999999999789989975899988788789999999999769876389980787899999854798
Q ss_pred CC--------CCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 43--------11122223223310013332100000112322101112233222111112-2222
Q gi|254780893|r 60 FE--------VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR-IRAI 115 (236)
Q Consensus 60 ~~--------~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~ar-i~~l 115 (236)
+. .++.-| .+++.-||.|.++--..+.... =.+.|+.-||+..+=..| |..+
T Consensus 81 IRAAl~~d~~~A~~aR-~HNnANVL~LGar~i~~~~A~~---iv~~fL~T~Feggrh~~RRv~KI 141 (171)
T PRK08622 81 IRSALVRDMTSALYAK-EELNANVIGFGGKIIGELLMCD---IIDAFINAEYKPTEENKKLIAKI 141 (171)
T ss_pred EEEEEECCHHHHHHHH-HHCCCEEEEECCCCCCHHHHHH---HHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 4899858989999999-9659718998611059999999---99999779989960787899999
No 403
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=41.40 E-value=29 Score=16.00 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=6.0
Q ss_pred CCCCCEECCCCC
Q ss_conf 223310013332
Q gi|254780893|r 70 KISTPVCILSGM 81 (236)
Q Consensus 70 ~~~~pII~ls~~ 81 (236)
...+|+|..++.
T Consensus 89 ~~~vp~i~~~~~ 100 (299)
T cd04509 89 ALKIPLISPGAT 100 (299)
T ss_pred HHCCCEECCCCC
T ss_conf 828942226757
No 404
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.28 E-value=29 Score=15.99 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=24.2
Q ss_pred CEEEEECCHHHHHHHHHH-CCCCEEEECCC
Q ss_conf 899999998999999985-79947883114
Q gi|254780893|r 25 FNVYVTDLGEDGIELCKF-YEFDAIILDLG 53 (236)
Q Consensus 25 ~~v~~a~~~~eal~~~~~-~~~DlvIlD~~ 53 (236)
...+.+.|-.+|+..+.+ --+|+|||...
T Consensus 3 vK~f~a~dm~eAl~~Vr~eLG~DAVILstr 32 (412)
T PRK05703 3 IKRFTAKDMREALKQIKEELGPDAVILSNK 32 (412)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCEEEEECE
T ss_conf 699980999999999999978994999692
No 405
>pfam01976 DUF116 Protein of unknown function DUF116. This archaebacterial protein has no known function. The protein contains seven conserved cysteines and may also be an integral membrane protein.
Probab=41.13 E-value=29 Score=15.97 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 999999988989999999899999998579947883
Q gi|254780893|r 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIIL 50 (236)
Q Consensus 15 ~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIl 50 (236)
.+...-++.||.+..+..+.-+...+...+|+.||-
T Consensus 77 ~l~~la~~~G~~v~i~~Ggt~~rkii~~~~p~~Iig 112 (158)
T pfam01976 77 DLKELAEEYGYKVYIVPGGTFAKKIIKEYRPKAIIG 112 (158)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEE
T ss_conf 799999980987999648289999998729998999
No 406
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=41.10 E-value=29 Score=15.97 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=31.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH------HHHCCCCEEE
Q ss_conf 59998699899999999999889899999998999999------9857994788
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL------CKFYEFDAII 49 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~------~~~~~~DlvI 49 (236)
|+|+.-=-...++-|..+|...|+.|.+.++.-++++- +..+.||++|
T Consensus 448 r~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlV 501 (657)
T PRK05298 448 RVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (657)
T ss_pred EEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 699995459899999999996798079962666188999999998588875897
No 407
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=41.04 E-value=20 Score=17.00 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=20.8
Q ss_pred HHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1688999871-899737899999987188777775303667899988511
Q gi|254780893|r 154 EYQMIELLSL-RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 154 E~~lL~~L~~-~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
=.++++.|+. ...-.+-|--++-...+++..+. +.++..-.-|+.-+.
T Consensus 320 G~DV~KAlALGA~~V~iGRp~l~glaa~G~~GV~-~~l~iL~~El~~~M~ 368 (383)
T cd03332 320 GADIMKALALGAKAVLIGRPYAYGLALGGEDGVE-HVLRNLLAELDLTMG 368 (383)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHH
T ss_conf 7999999976999898778999987723199999-999999999999999
No 408
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.95 E-value=29 Score=15.95 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=43.8
Q ss_pred CEEEEECCC--------HHHHHHHHHHHHHCCCEEEEECCHH-HH-----HH-----------HHHHCCCCEEEECCCCC
Q ss_conf 959998699--------8999999999998898999999989-99-----99-----------99857994788311498
Q gi|254780893|r 1 MRILLIEDD--------KALAHSIELMLKSENFNVYVTDLGE-DG-----IE-----------LCKFYEFDAIILDLGLT 55 (236)
Q Consensus 1 mkILivedd--------~~~~~~l~~~L~~~g~~v~~a~~~~-ea-----l~-----------~~~~~~~DlvIlD~~lp 55 (236)
|||+|+-|- ..-...|...|+..|+.+....... ++ ++ .+.+..||++|.|.-
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~~~~n~ik~~k~d~lI~Dsy-- 78 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEGRGNNLIKEEKFDLLIFDSY-- 78 (318)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEECC--
T ss_conf 957999268755575134559999999985174688840662564215666510430023364100366778999426--
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 7433431112222322331001333
Q gi|254780893|r 56 DIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 56 ~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
+.+ -+..+.|+.. -..++|+.-.
T Consensus 79 gl~-~dd~k~ik~e-~~~k~l~fDd 101 (318)
T COG3980 79 GLN-ADDFKLIKEE-AGSKILIFDD 101 (318)
T ss_pred CCC-HHHHHHHHHH-HCCCEEEECC
T ss_conf 888-7899998897-3881799647
No 409
>pfam01978 TrmB Sugar-specific transcriptional regulator TrmB. One member of this family, TrmB, has been shown to be a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter in Thermococcus litoralis.
Probab=40.82 E-value=29 Score=15.94 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCC
Q ss_conf 2224641168899987189973789999998718877777530366789998851106788843888878202645688
Q gi|254780893|r 147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 (236)
Q Consensus 147 ~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l~~~~ 225 (236)
.+-||+.|.++...|+++.+ .+-.+|.+.. .....++-..+.+|-+| .++..+.|...++.+-.
T Consensus 3 ~~Gls~~E~~vY~~Ll~~g~--~t~~eia~~~-----~i~r~~vY~~L~~L~~k--------Glv~~~~~~p~~y~a~~ 66 (68)
T pfam01978 3 KLGLSEYEAKVYLALLKLGP--ATADEIAEES-----GVPRSKVYEVLRSLEKK--------GLVEREKGRPKKYRAVD 66 (68)
T ss_pred CCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHC--------CCEEEECCCCCEEEECC
T ss_conf 23989999999999998199--8899999995-----98898999999999988--------98898679744798159
No 410
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=40.61 E-value=30 Score=15.92 Aligned_cols=68 Identities=15% Similarity=0.333 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECC------HHHHHHHHHHCCCCEEEECCC---CCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 9999999999988989999999------899999998579947883114---9874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDL------GEDGIELCKFYEFDAIILDLG---LTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~------~~eal~~~~~~~~DlvIlD~~---lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+++.||.+..+.+ -.++++.+....+|.+|+.-. .++ ...+..+.+++ ..+|++++...
T Consensus 16 ~~~~gi~~~~~~~gy~~li~~s~~~~~~e~~~l~~l~~~~vdGiIl~~~~~~~~~-~~~~~~~~l~~--~~iPvV~i~~~ 92 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPN-PNIDLYLKLEK--LGIPYVFINAS 92 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCHHHHHHHHH--CCCCEEEEECC
T ss_conf 9999999999986998999978999899999999999659998999253103578-77799999997--69989999567
No 411
>pfam11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3. This family of class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi, The member from S. pombe is referred to as Ccq1. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C-terminus.
Probab=40.60 E-value=19 Score=17.12 Aligned_cols=60 Identities=15% Similarity=0.009 Sum_probs=37.3
Q ss_pred HCCCCEEEECCCCCCCCCC--------------C----CCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 5799478831149874334--------------3----11122223223310013332100000112322101112233
Q gi|254780893|r 42 FYEFDAIILDLGLTDIPGF--------------E----VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102 (236)
Q Consensus 42 ~~~~DlvIlD~~lp~~~G~--------------~----~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP 102 (236)
.++|++ +.|.-||..-.+ . ++..+......+-|++++....+-+.++++-.|-.-.+.+|
T Consensus 66 a~HP~L-lidH~~p~~l~~~~~~~~~~~tSgKF~~L~~Li~~~~~~~~~~~ilIv~~~~k~ldLlE~~llgk~~~y~r~ 143 (278)
T pfam11496 66 ATHPYL-LIDHYMPKSLLLKEEAEHLAETSGKFLVLNDLINLLIPSERDLHVLIISRSGKTLDLVEALLLGKGLKYKRL 143 (278)
T ss_pred CCCCCH-HHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECC
T ss_conf 279326-434557876644244789998233399999999998734578379999789537999999972586467607
No 412
>PRK10537 voltage-gated potassium channel; Provisional
Probab=40.54 E-value=7.3 Score=19.58 Aligned_cols=30 Identities=0% Similarity=0.132 Sum_probs=13.4
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 224641168899987189973789999998
Q gi|254780893|r 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 (236)
Q Consensus 148 i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~ 177 (236)
|.....+-.+=++--..+++|+|-..+-..
T Consensus 297 VA~a~~~en~~KlrrAGAD~VISP~~lGg~ 326 (356)
T PRK10537 297 VAAVNDSKNLEKIKRVHPDMIFSPQLLGSE 326 (356)
T ss_pred EEEECCHHHHHHHHHHCCCEEECHHHHHHH
T ss_conf 999676757999986289999868887899
No 413
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=40.36 E-value=30 Score=15.90 Aligned_cols=73 Identities=7% Similarity=0.003 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCC--CCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 98999999999998898999999989999999857994788311498743--3431112222322331001333210
Q gi|254780893|r 9 DKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP--GFEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 9 d~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~--G~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
-..++..+...|...|+.+....+..........-..+-+++=+..++.+ -.++++..|+ ..+|+|.+|+...
T Consensus 24 S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~~~~~~~~~~~ak~--~g~~ii~IT~~~~ 98 (139)
T cd05013 24 SGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKE--RGAKVIAITDSAN 98 (139)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH--CCCEEEEEECCCC
T ss_conf 59999999999725898279879627788887459999999997686363789999999998--6997999979999
No 414
>PRK06101 short chain dehydrogenase; Provisional
Probab=40.31 E-value=30 Score=15.89 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=40.0
Q ss_pred CE-EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 95-999869989999999999988989999999899999998579947883114987
Q gi|254780893|r 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 (236)
Q Consensus 1 mk-ILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~ 56 (236)
|| |||..--.-+...+...|-+.|++|..+.--++.++.+.....++..+...+.+
T Consensus 1 MktvlITGassGIG~a~A~~la~~G~~Vi~~~R~~~~l~~~~~~~~~~~~~~~Dvtd 57 (241)
T PRK06101 1 MTSVLITGATSGIGKQLALDYAKAGWKVIACGRNEAVLDELHDQSSNIFTLAFDVTD 57 (241)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 998999224049999999999987998999989999999999732880489852267
No 415
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=40.23 E-value=30 Score=15.89 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 4641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 150 LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 150 LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
|+..... +..|....| +|..+|.+.+ ..+..||.+.++|-|++|...
T Consensus 137 Lp~~~R~-vl~L~~~eg--ls~~EIA~~l-----gis~~tVks~l~RAR~~Lr~~ 183 (195)
T PRK12532 137 LPENTAR-VFTLKEILG--FSSDEIQQMC-----GISTSNYHTIMHRARESLRQC 183 (195)
T ss_pred CCHHHHH-HHHHHHHCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999989-999999819--9999999998-----959999999999999999999
No 416
>PRK12534 RNA polymerase sigma factor; Provisional
Probab=40.20 E-value=30 Score=15.88 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++....++.+..- .| .|.++|.+.+ .....||.++++|-|++|...
T Consensus 137 ~L~~~~r~vi~l~~~-eg--~s~~EIA~~l-----~i~~gTVksrl~ra~~~Lr~~ 184 (187)
T PRK12534 137 ELEPPRSELIRTAFF-EG--ITYEELAART-----DTPIGTVKSWIRRGLAKLKAC 184 (187)
T ss_pred HCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 689989999999998-49--9999999998-----919999999999999999998
No 417
>TIGR00259 TIGR00259 conserved hypothetical protein TIGR00259; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A , which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA , Ycf3 , , and Ycf4 (IPR003359 from INTERPRO) . Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation . It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane , . Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain . Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids . The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners . Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates proteinprotein interactions. .
Probab=39.85 E-value=18 Score=17.26 Aligned_cols=68 Identities=26% Similarity=0.126 Sum_probs=42.1
Q ss_pred CCHHHH-HHHHHHCCCCEEEEC-CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 998999-999985799478831-1498743343111222232233100133321000001123221011122
Q gi|254780893|r 31 DLGEDG-IELCKFYEFDAIILD-LGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 31 ~~~~ea-l~~~~~~~~DlvIlD-~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~ 100 (236)
.|..+. ++.+..+.+|.+|+- +.-.....+|.++..++.-+.+|+++=|+-+.+. ++-+-.-||++|+
T Consensus 161 ~~l~~~~~~Tver~laDAvi~SG~~tG~~~~~e~Lk~ak~~~~~~pVl~gsG~~~~N--~~~ll~~AdG~iv 230 (261)
T TIGR00259 161 RDLESIVLDTVERGLADAVILSGKTTGTEVDLEELKLAKETVKDTPVLAGSGVNLEN--VEELLSIADGVIV 230 (261)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHHHHCCEEE
T ss_conf 366889864454169883898154578887888899998751796699847879889--9999987398798
No 418
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=39.84 E-value=15 Score=17.67 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=38.0
Q ss_pred HHHHHHHHHCCCEEE-----EECCHHH---HHHHHHHCCCCEEEEC--CCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 999999998898999-----9999899---9999985799478831--14987433431112222322331001333
Q gi|254780893|r 14 HSIELMLKSENFNVY-----VTDLGED---GIELCKFYEFDAIILD--LGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 14 ~~l~~~L~~~g~~v~-----~a~~~~e---al~~~~~~~~DlvIlD--~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
..+...|...|+.-. ..+-|+. ++..+-...||+.+|| .|.-|.+++++++..-...+. .+|++|-
T Consensus 133 ~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSH 208 (530)
T COG0488 133 ARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSH 208 (530)
T ss_pred HHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEC
T ss_conf 899999962998934485443598899999999987349997887498864588899999999986899-4899968
No 419
>pfam01475 FUR Ferric uptake regulator family. This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.
Probab=39.64 E-value=31 Score=15.83 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 224641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 148 i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
+.+|+.-..+|.+|.++. +++|-++|++.+-.....++. +-|+|-=..|.+.
T Consensus 4 lR~T~qR~~Il~~l~~~~-~~~ta~~i~~~l~~~~~~i~~----~TVYR~L~~L~~~ 55 (120)
T pfam01475 4 LKITPQRLKILEVLEKSD-EHLSAEEIYRELLEEDPNISL----ATVYRTLKLLEEA 55 (120)
T ss_pred CCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHC
T ss_conf 988889999999998279-998999999999965899878----9999999999967
No 420
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=39.63 E-value=17 Score=17.40 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=6.9
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99985799478831
Q gi|254780893|r 38 ELCKFYEFDAIILD 51 (236)
Q Consensus 38 ~~~~~~~~DlvIlD 51 (236)
+.+....||+||||
T Consensus 116 ~~l~~~~ydlviLD 129 (198)
T COG2109 116 EALADGKYDLVILD 129 (198)
T ss_pred HHHHCCCCCEEEEE
T ss_conf 99738887889972
No 421
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=39.59 E-value=31 Score=15.83 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=53.6
Q ss_pred EEEEECCHHHHHHHHHHCCCC-EEEECCCCCC---CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 999999989999999857994-7883114987---433431112222322331001333210000011232210111223
Q gi|254780893|r 26 NVYVTDLGEDGIELCKFYEFD-AIILDLGLTD---IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK 101 (236)
Q Consensus 26 ~v~~a~~~~eal~~~~~~~~D-lvIlD~~lp~---~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~K 101 (236)
......|+.+....+...-.| +.++|+.-.. ..-+++++.+.+ ...+|+=+-.+-.+.++.-+.|++|||-.+.-
T Consensus 26 ~~~~~gdP~~~a~~~~~~Gad~lhlvDld~a~~~~~~n~~~I~~i~~-~~~vpiqvGGGIrs~e~~~~ll~~GadkViig 104 (252)
T PRK13597 26 NLRDAGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAE-RVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_pred CCEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 86788899999999998699999999564666686637999999986-26982898477130899999985698779832
Q ss_pred C
Q ss_conf 3
Q gi|254780893|r 102 P 102 (236)
Q Consensus 102 P 102 (236)
.
T Consensus 105 S 105 (252)
T PRK13597 105 S 105 (252)
T ss_pred H
T ss_conf 6
No 422
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=39.51 E-value=31 Score=15.82 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=5.9
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999998898
Q gi|254780893|r 13 AHSIELMLKSENF 25 (236)
Q Consensus 13 ~~~l~~~L~~~g~ 25 (236)
++.|...|.+.|.
T Consensus 3 ~~~Lv~~l~~~g~ 15 (205)
T pfam01135 3 NEALIENLKNYGV 15 (205)
T ss_pred HHHHHHHHHHCCC
T ss_conf 8999999998399
No 423
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=39.39 E-value=31 Score=15.81 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|+++.-.+|.+-.- .| .|.++|.+.+ ..+..||.++++|-|++|...
T Consensus 106 ~Lp~~qR~vl~L~~~-eg--ls~~EIA~~l-----~is~~tVk~~l~RAr~~Lr~~ 153 (161)
T PRK09047 106 KLPARQREAFLLRYW-ED--MDVAETAAAM-----GCSEGSVKTHCSRATHTLAKA 153 (161)
T ss_pred HCCHHHHHHHHHHHH-HC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 199999999899999-87--7999999998-----969999999999999999999
No 424
>PHA02518 ParA-like protein; Provisional
Probab=39.27 E-value=18 Score=17.29 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=28.1
Q ss_pred CEEEEECCCHHHHHHHHHHHH--HCCCEE-EEECCHH---HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 959998699899999999999--889899-9999989---9999998579947883114987433431112222
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLK--SENFNV-YVTDLGE---DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRV 68 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~--~~g~~v-~~a~~~~---eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~ 68 (236)
.|||+||=|+.-. +...++ ..+-.. ....-+. ..+..+ ...||.||+|. |...+..+...+..
T Consensus 30 ~~VlliD~DpQ~s--~~~w~~~r~~~~~~~~~~~~~~~~~~~l~~~-~~~yD~viID~--pp~~~~~~~~al~a 98 (211)
T PHA02518 30 HKVLLVDLDPQGS--STDWAEAREEGEPLIPVVRMGKSIRADLPKV-ASGYDYVVVDG--APQDSELARAALRI 98 (211)
T ss_pred CCEEEEECCCCCC--HHHHHHHCCCCCCCCCHHHCCHHHHHHHHHH-CCCCCEEEECC--CCCCHHHHHHHHHH
T ss_conf 9489997799967--8899985226899740121367799999974-06788899889--99742999999995
No 425
>PRK10742 putative methyltransferase; Provisional
Probab=39.27 E-value=31 Score=15.79 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=28.5
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3222464116889998718997378999999871887777753036678999885
Q gi|254780893|r 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200 (236)
Q Consensus 146 ~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkK 200 (236)
+.-.|.+||.++|..|.-. --..+.|++..+... . =+|.|+|=++.
T Consensus 178 kKsAlvKKeMq~l~~Lvg~---d~Da~~LL~~Al~~a---~---~RVVVKRP~~A 223 (250)
T PRK10742 178 QKSALVKKEMRVFQSLVGP---DLDADGLLEPARLLA---T---KRVVVKRPDYA 223 (250)
T ss_pred CCCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHC---C---CEEEECCCCCC
T ss_conf 5412234379999998578---837899999999667---8---84998788887
No 426
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.91 E-value=31 Score=15.76 Aligned_cols=74 Identities=23% Similarity=0.191 Sum_probs=55.4
Q ss_pred EEEEE-CCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 59998-699899999999999889--899999998999999985799478831149874334311122223223310013
Q gi|254780893|r 2 RILLI-EDDKALAHSIELMLKSEN--FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 (236)
Q Consensus 2 kILiv-edd~~~~~~l~~~L~~~g--~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~l 78 (236)
.||+- |+|..+-+++....+.+| |.+....|....+..+.. --+++.+.|=+.+--++..+||......-||+-
T Consensus 34 gil~~~e~De~v~esv~dVv~rwGG~F~v~~~~nw~~~i~~wk~---gG~vvHLTMYG~~i~dv~~ei~~~~k~~lvvVG 110 (179)
T COG1303 34 GILLDGEEDEKVVESVEDVVERWGGPFFVKFGVNWRKVIREWKE---GGIVVHLTMYGLNIDDVIDEIRESKKDVLVVVG 110 (179)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC---CCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 47973764377999999999854997799972238999987404---877999996277630341898746872799975
No 427
>PRK03094 hypothetical protein; Provisional
Probab=38.63 E-value=32 Score=15.73 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=40.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE---CCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 95999869989999999999988989999999899999998579947883---114987433431112222322331001
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIIL---DLGLTDIPGFEVLRALRVAKISTPVCI 77 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIl---D~~lp~~~G~~~~~~ir~~~~~~pII~ 77 (236)
|+-.=||.. ...+..+|++.||+|....+..++ ..+|++|+ |.+|-+ ++ ......|||=
T Consensus 1 m~kIaVE~~---Ls~v~~~L~~~GY~Vv~l~~~~~a------~~~Da~ViTG~d~N~mG---iq------d~~t~~pVI~ 62 (80)
T PRK03094 1 MAKIGVENS---LTDVQQALKQKGYEVVTLNSEQDA------QGCDCCVVTGQDSNVMG---IA------DTSTKGSVIT 62 (80)
T ss_pred CCCEEECCC---CHHHHHHHHHCCCEEEECCCCCCC------CCCCEEEEECCCCCCCC---CC------CCCCCCCEEE
T ss_conf 981673267---259999999779878966871433------56788999589765226---44------1345687486
Q ss_pred CCCCCC
Q ss_conf 333210
Q gi|254780893|r 78 LSGMSS 83 (236)
Q Consensus 78 ls~~~~ 83 (236)
-++.+.
T Consensus 63 A~GlTa 68 (80)
T PRK03094 63 ASGLTA 68 (80)
T ss_pred CCCCCH
T ss_conf 789999
No 428
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=38.55 E-value=32 Score=15.73 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=33.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEC
Q ss_conf 959998699899999999999889899999998999999985799478831
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILD 51 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD 51 (236)
++|||++-.......+...+++.|+.-...-........+....||.+|+-
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIls 52 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIIS 52 (198)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEC
T ss_conf 579999579707679999998739826999857888011566688889985
No 429
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.35 E-value=27 Score=16.17 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=53.4
Q ss_pred EEECCHHHHHHHHHHCCCC-EEEECCCCC---CCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 9999989999999857994-788311498---7433431112222322331001333210000011232210111223
Q gi|254780893|r 28 YVTDLGEDGIELCKFYEFD-AIILDLGLT---DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK 101 (236)
Q Consensus 28 ~~a~~~~eal~~~~~~~~D-lvIlD~~lp---~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~K 101 (236)
.+..++.+....+...-.| +.|+|+.-. ...-+++++.|.+ ...+|+-+-.+-.+.++.-+.|++|||-.+.-
T Consensus 27 ~~~gdP~~~ak~f~~~GadelhivDld~a~~g~~~n~~~I~~I~~-~~~ipi~vGGGIrs~e~~~~ll~~GadkViig 103 (253)
T PRK01033 27 KYVGDPINAVRIFNEKEADELIVLDIDASRKGREPNYELIENLAS-ECFMPLCYGGGIKTVEQAKRIFSLGVEKVSIS 103 (253)
T ss_pred EECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 488899999999998799989999474542488016999999998-76998898688121688899986798669999
No 430
>pfam06555 consensus
Probab=38.27 E-value=32 Score=15.70 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC
Q ss_conf 99999998898999999989999999857994
Q gi|254780893|r 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFD 46 (236)
Q Consensus 15 ~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~D 46 (236)
.+.+.|+..||+++++.+.+||++.+...-|+
T Consensus 2 k~i~~L~~~~f~~~~~~t~eeA~~~~~~lI~~ 33 (200)
T pfam06555 2 KTVENLEKNNFEAYYVENKEEALELILELIPE 33 (200)
T ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 77999997898799979999999999986899
No 431
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=38.25 E-value=32 Score=15.70 Aligned_cols=69 Identities=20% Similarity=0.038 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 9999999999988989999-------9998999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.....+...+++.|.++.. ..+....+..+....||+|++- ....++..+++.+++.+...+++..+..
T Consensus 150 ~~~~~~~~~~~~~g~~iv~~~~~~~~~~d~s~~v~~l~~~~~d~v~~~--~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 225 (340)
T cd06349 150 TSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILI--SYYNDGAPIARQARAVGLDIPVVASSSV 225 (340)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 999999999997499699986258666757999999986699999991--5753599999999976999709985476
No 432
>PRK12541 RNA polymerase sigma factor; Provisional
Probab=38.03 E-value=33 Score=15.68 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|++.+..++.+- .-.| .|..||.+.+ ..+..||.++++|-|+||..
T Consensus 112 ~Lp~~~R~v~~L~-~~~g--~s~~EIA~~l-----gis~~tVk~~l~RArk~Lr~ 158 (161)
T PRK12541 112 SLPLERRNVLLLR-DYYG--FSYKEIAEMT-----GLSLAKVKIELHRGRKETKS 158 (161)
T ss_pred CCCHHHHHHHHHH-HHCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 1999999999989-9749--9999999998-----93999999999999999987
No 433
>PRK00082 hrcA heat-inducible transcription repressor; Provisional
Probab=37.80 E-value=33 Score=15.66 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=11.5
Q ss_pred CCCCCEECCCCCCCHHCCCC
Q ss_conf 22331001333210000011
Q gi|254780893|r 70 KISTPVCILSGMSSIEDKVR 89 (236)
Q Consensus 70 ~~~~pII~ls~~~~~~~~~~ 89 (236)
...+-+|+++..+....++-
T Consensus 146 ~~~~l~vlVt~~G~V~~~~i 165 (339)
T PRK00082 146 PHRALAILVTDSGQVENRVI 165 (339)
T ss_pred CCEEEEEEEECCCCEEEEEE
T ss_conf 97189999945996578874
No 434
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family; InterPro: IPR010166 This entry represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family, IPR000835 from INTERPRO..
Probab=37.79 E-value=33 Score=15.65 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=36.4
Q ss_pred CCCCCCCCHHHHHHHHH--HCCC---CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 32224641168899987--1899---7378999999871887777753036678999885
Q gi|254780893|r 146 HRIHLTGKEYQMIELLS--LRKN---TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200 (236)
Q Consensus 146 ~~i~LT~~E~~lL~~L~--~~~g---~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkK 200 (236)
....||-.||.+|.+|. .+.. .-++..+|...+- ...+ .+...|++|-+|
T Consensus 19 ~~~~ls~~e~~~L~~l~~~~~~e~vl~~~~~K~i~~~~~----~~~~-~~~~~~k~L~~k 73 (112)
T TIGR01889 19 KEFNLSLEELLILYYLLKLEKNEKVLNKLTLKEIIKEIL----IKQS-KLVKIIKKLSKK 73 (112)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHH-HHHHHHHHHHHH
T ss_conf 330346999999999999863114543230888998756----7834-678999877750
No 435
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=37.55 E-value=33 Score=15.63 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 899999999999889899999998------999999985799478831149874334311122223223310013332
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
..+...+...+++.||++..+.+. .+.++.+....+|-+|+-....+ ......+. ....+|++++...
T Consensus 15 ~~l~~gi~~~~~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDGiIi~~~~~~---~~~~~~~~-~~~~iPvV~id~~ 88 (269)
T cd06275 15 AEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYD---QPLLAMLE-RYRHIPMVVMDWG 88 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---HHHHHHHH-HHCCCCEEEECCC
T ss_conf 99999999999986998999968999899999999999569999999368898---37899999-8289988998467
No 436
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=37.48 E-value=33 Score=15.62 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=34.1
Q ss_pred CEEEEECCCHH-H-HHHHHHHHHHCCCEEEEECCHHHHHHHHHH------------CCCCEEEECCCC
Q ss_conf 95999869989-9-999999999889899999998999999985------------799478831149
Q gi|254780893|r 1 MRILLIEDDKA-L-AHSIELMLKSENFNVYVTDLGEDGIELCKF------------YEFDAIILDLGL 54 (236)
Q Consensus 1 mkILivedd~~-~-~~~l~~~L~~~g~~v~~a~~~~eal~~~~~------------~~~DlvIlD~~l 54 (236)
|||.|..-++. + ...|....++.||.+...+- .++.-.+.. ..||.+|.-++.
T Consensus 1 mki~iLs~~~~~yst~RL~eaa~~rGh~v~vidp-~~~~~~i~~~~~~v~~~g~~L~~~DavipR~g~ 67 (300)
T PRK10446 1 MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDP-LSCYMNINPAASSIHYKGRKLPHFDAVIPRIGT 67 (300)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEH-HHCEEEECCCCCEEEECCEECCCCCEEEECCCC
T ss_conf 9799993699760799999999987995999614-891898248986499898086878889982677
No 437
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=37.33 E-value=33 Score=15.61 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCC--CCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 999999999998898999999989999999857994788311498743--34311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP--GFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~--G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.++..+...|..-|+.+....+....+.....-.++-+++=+..++.+ -.+.++..| ..++|||.+|+.
T Consensus 145 ~vA~~~~~kl~rig~~~~~~~d~~~~~~~~~~l~~~Dv~I~iS~sG~t~~~~~~~~~Ak--~~Ga~iIaIT~~ 215 (282)
T PRK11557 145 LVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEAL--RVGGKVLAITGF 215 (282)
T ss_pred HHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH--HCCCEEEEECCC
T ss_conf 99999999999809963740886899999981899998999859999789999999999--879939997298
No 438
>pfam04852 DUF640 Protein of unknown function (DUF640). This family represents a conserved region found in plant proteins including Resistance protein-like protein.
Probab=37.19 E-value=31 Score=15.77 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=21.5
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99987188777775303667899988511067888
Q gi|254780893|r 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK 208 (236)
Q Consensus 174 i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~ 208 (236)
-+.+.|| +||++|-|||...++..+.+
T Consensus 87 PlRqAwG--------SlDaLiGRLrAafee~Gg~p 113 (133)
T pfam04852 87 PLRQAWG--------SLDALIGRLRAAFEEHGGHP 113 (133)
T ss_pred HHHHHHC--------CHHHHHHHHHHHHHHHCCCC
T ss_conf 3888740--------18999999999999828998
No 439
>PRK12376 putative translaldolase; Provisional
Probab=37.17 E-value=34 Score=15.59 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=28.0
Q ss_pred CEEEEE-CCHHHHHHH---HHHCCCCEEEECCCCCCCCCC---CCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCC-
Q ss_conf 899999-998999999---985799478831149874334---311122223223310013332100000112322101-
Q gi|254780893|r 25 FNVYVT-DLGEDGIEL---CKFYEFDAIILDLGLTDIPGF---EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGAD- 96 (236)
Q Consensus 25 ~~v~~a-~~~~eal~~---~~~~~~DlvIlD~~lp~~~G~---~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAd- 96 (236)
.++..+ .+.++-++. +..-.++++| =+.+....|. .+++.+.+. .+++-+---++..+ ...+..++|+
T Consensus 63 is~EV~~~~~~~mi~qA~~l~~~~~nv~V-KIP~t~~~G~~~~~~ik~L~~~--Gi~vnvTaifs~~Q-a~~a~~A~a~~ 138 (238)
T PRK12376 63 ISFEVFADDLETMEKEAEILASLGENVYV-KIPITNTKGESTIPLIKKLSAD--GIKLNVTAIFTIEQ-VKEVVDALTPG 138 (238)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCCEEE-EECCCCCCHHHHHHHHHHHHHC--CCCEEEEEEECHHH-HHHHHHHCCCC
T ss_conf 79999568778899999999975897799-9778575518999999999887--99668999827999-99999852777
Q ss_pred --CCCCCCC
Q ss_conf --1122332
Q gi|254780893|r 97 --DYISKPF 103 (236)
Q Consensus 97 --dyi~KP~ 103 (236)
.|+ -||
T Consensus 139 ~a~yv-Spf 146 (238)
T PRK12376 139 VPSIV-SVF 146 (238)
T ss_pred CCEEE-EEE
T ss_conf 88277-512
No 440
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.07 E-value=34 Score=15.58 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 899999999999889899999998------9999999857994788311498743343111222232233100133321
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~ 82 (236)
..+...+...+++.||.+..+.+. .+.++.+.....|-+|+- +.. .-+....++ ...+|++++....
T Consensus 18 ~~l~~gie~~~~~~Gy~lll~~~~~~~~~e~~~~~~l~~~~vdGiI~~---~~~-~~~~~~~l~--~~~~P~V~id~~~ 90 (268)
T cd06277 18 SEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILL---GGI-STEYIKEIK--ELGIPFVLVDHYI 90 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCC-CHHHHHHHH--HCCCCEEEECCCC
T ss_conf 999999999999849989999389998999999999994898789997---899-979999999--7599899967768
No 441
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=37.04 E-value=34 Score=15.58 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=38.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH------HHHCCCCEEE
Q ss_conf 59998699899999999999889899999998999999------9857994788
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL------CKFYEFDAII 49 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~------~~~~~~DlvI 49 (236)
|+|+.-=-..+++-|..+|.+.|..|.+.++.-++++- +..+.||++|
T Consensus 448 RvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLV 501 (663)
T COG0556 448 RVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (663)
T ss_pred EEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 299984368889999999986696478642440389999999997577874898
No 442
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=36.98 E-value=34 Score=15.58 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=42.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 9599986998999999999998898999999989999999857994788311498
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp 55 (236)
|+||+..---.+...+...|...|++|..+....+...... ...++...|+..|
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~ 54 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDP 54 (275)
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHCC-CCCEEECCCCCCC
T ss_conf 93899867775799999999975986999736822111103-7852884564160
No 443
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=36.93 E-value=34 Score=15.57 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 89999999999988989999--999899999998579947883114987433431112222322331001333
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYV--TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~--a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
..+...+...+++.||.+.. ..+..+....+....+|-+|+= +....-.....+ ....+|++++..
T Consensus 15 ~~l~~gi~~~~~~~GY~~ll~~~~~~~~~~~~l~~~~vDGiIi~---~~~~~~~~~~~~--~~~~iPvV~~~~ 82 (261)
T cd06272 15 TELVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIF---GESASDVEYLYK--IKLAIPVVSYGV 82 (261)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHH--HHCCCCEEEECC
T ss_conf 99999999999984998999968985999999996799899997---898997999999--748993999836
No 444
>KOG1601 consensus
Probab=36.90 E-value=22 Score=16.68 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=46.3
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 799478831149874334311122223--223310013332100000112322101112233222111
Q gi|254780893|r 43 YEFDAIILDLGLTDIPGFEVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL 108 (236)
Q Consensus 43 ~~~DlvIlD~~lp~~~G~~~~~~ir~~--~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL 108 (236)
..+|+++-+..+|++.++.....+... ....|+.+.+...........+..|+.+|+.+|....++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 129 (340)
T KOG1601 62 FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRL 129 (340)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55676676533355532134552146645467886545544545544455466411245555553444
No 445
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases; InterPro: IPR004636 This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from Escherichia coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (2.6.1.11 from EC), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism . Members of this family may also act on ornithine, like ornithine aminotransferase (2.6.1.13 from EC) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (2.6.1.17 from EC, DapC, an enzyme of lysine biosynthesis) . ; GO: 0008483 transaminase activity, 0006525 arginine metabolic process.
Probab=36.86 E-value=26 Score=16.31 Aligned_cols=198 Identities=16% Similarity=0.220 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHCC-----CEEEEECCHHHHHHHHHH------C-----CCCEEEECCCCCC--CCCCCCCCCCCCCC
Q ss_conf 9899999999999889-----899999998999999985------7-----9947883114987--43343111222232
Q gi|254780893|r 9 DKALAHSIELMLKSEN-----FNVYVTDLGEDGIELCKF------Y-----EFDAIILDLGLTD--IPGFEVLRALRVAK 70 (236)
Q Consensus 9 d~~~~~~l~~~L~~~g-----~~v~~a~~~~eal~~~~~------~-----~~DlvIlD~~lp~--~~G~~~~~~ir~~~ 70 (236)
-..+++.|......+| -.|+-|.||.||.+..-. . ..-+|=+-=.+=+ |-++.+.-+=+-+.
T Consensus 73 ~~~LA~kLv~~~~~dgGqhd~~rvFFCNSGaEAnEAAlKlARk~~~~~g~~k~~ivaf~naFHGRT~g~LsaTgqpKy~~ 152 (402)
T TIGR00707 73 QEELAEKLVEHSGADGGQHDASRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIVAFENAFHGRTMGALSATGQPKYQK 152 (402)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCC
T ss_conf 99999999999704688302326675147478999999998986402278865388887077630045430047764568
Q ss_pred CCCC----EECCCCCCC-HHCCCCCCCCC-----CCCCCCCCC--------CCCCCCCCCCCCCCCCCC-----------
Q ss_conf 2331----001333210-00001123221-----011122332--------221111122222222222-----------
Q gi|254780893|r 71 ISTP----VCILSGMSS-IEDKVRGLQSG-----ADDYISKPF--------NKEELVARIRAIVRRSRG----------- 121 (236)
Q Consensus 71 ~~~p----II~ls~~~~-~~~~~~al~~G-----Addyi~KP~--------~~~eL~ari~~llrr~~~----------- 121 (236)
+--| +=++. ++| .+..-.+.+-- .=.-|.=|+ -..|.+.++|-+..+...
T Consensus 153 ~F~PLvpgf~y~~-yNDe~~~l~~~i~~~~eg~rtAAvivEpiQGEgGV~pa~~~fL~a~r~lc~~~~~LLI~DEVQtG~ 231 (402)
T TIGR00707 153 PFEPLVPGFKYVP-YNDEIEALKEAIDDEKEGDRTAAVIVEPIQGEGGVVPADKEFLKALRELCEDKDALLIFDEVQTGL 231 (402)
T ss_pred CCCCCCCCCEEEC-CCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECC
T ss_conf 5788423812444-889789999985025778718899985321786533487789999999986489189994475287
Q ss_pred -CCCCCCCCCCCC--CCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC----------
Q ss_conf -222222222222--2222222233---333222464116889998718997378999999871887777----------
Q gi|254780893|r 122 -HAQSLIVTGDLS--VNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP---------- 185 (236)
Q Consensus 122 -~~~~~~~~g~~~--~d~~~~~v~~---~g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~---------- 185 (236)
-....+-+..|- +.|+--|+.+ +|-+|- -++.++++.+.+-.+++.+
T Consensus 232 GRTG~~fA~~Hygse~~PDi~T~AKgLGgG~PiG-----------------A~~~~e~~a~~~~~G~HGsTFGGNPLAc~ 294 (402)
T TIGR00707 232 GRTGKLFAYEHYGSEVEPDIITLAKGLGGGVPIG-----------------AVLAKEEVAEALTPGDHGSTFGGNPLACA 294 (402)
T ss_pred CCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHH-----------------HHEEHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 7433223312068845523875405552782022-----------------32023678731589898666787389999
Q ss_pred ----------CCCHHHHHHHH---HHHHHHHCCCCCC-EEEEECCCEEEECCC
Q ss_conf ----------75303667899---9885110678884-388887820264568
Q gi|254780893|r 186 ----------EVKIIDVFICK---LRKKLSNAAGGKN-YIETVWGRGYVLREN 224 (236)
Q Consensus 186 ----------~~~tld~~I~r---LRkKL~~~~~~~~-~I~tvrG~GY~l~~~ 224 (236)
+++-|+.-..+ ||++|+..-.... +|++|||.|=++--.
T Consensus 295 Aa~~vl~~i~~~~~l~~v~~~G~~f~~~L~~~~~~~~~l~k~VRG~GLmlG~e 347 (402)
T TIGR00707 295 AALAVLEVIEKERLLEKVKEKGDYFKERLEELIKKYIDLIKEVRGKGLMLGIE 347 (402)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEE
T ss_conf 98776665505104789999889999999986177667401532312346556
No 446
>PRK12513 RNA polymerase sigma factor; Provisional
Probab=36.75 E-value=34 Score=15.55 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|+++...++.+-.- .| .|..+|.+.+ ..+.+||.++++|-|++|...
T Consensus 139 ~Lp~~~r~il~L~~~-~g--~s~~EIA~~l-----~is~~tVk~~l~rA~~~Lr~~ 186 (194)
T PRK12513 139 TLPDEQREVFLLREH-GD--LSLEEIAQLT-----GVPLETVKSRLRYALQKLREL 186 (194)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 299899999999998-49--9999999998-----949999999999999999999
No 447
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=36.43 E-value=16 Score=17.45 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=67.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 59998699899999999999889899999998999999985799478831149874334311122223223310013332
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.||+||-|..+...+. .++.- ..+-++|.--+.|+..--.+++.|.... .+|+..++..
T Consensus 2 ~vlVVEK~avf~~L~~-----~~~~~---------------~~~~iliTgKG~Pd~~TR~fl~~L~~~~-~lpv~~l~D~ 60 (160)
T cd00223 2 FVLVVEKEAVFQRLIE-----EGFHE---------------RNNCILITGKGYPDRATRRFLRRLHEEL-DLPVYILVDG 60 (160)
T ss_pred EEEEEECHHHHHHHHH-----CCCCC---------------CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECC
T ss_conf 7999964999999997-----48564---------------4888999468888789999999999987-8988999758
Q ss_pred CC-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 10-000011232210111223322211111222222222222222222222222-2222222333332224641168899
Q gi|254780893|r 82 SS-IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIE 159 (236)
Q Consensus 82 ~~-~~~~~~al~~GAddyi~KP~~~~eL~ari~~llrr~~~~~~~~~~~g~~~~-d~~~~~v~~~g~~i~LT~~E~~lL~ 159 (236)
+- --.+...+..|... .++....+. .+ .+.+=++.. |... ......++||.++...+.
T Consensus 61 DP~Gi~I~~~Yk~Gs~~---~~~~~~~~~-------------~p-~i~wlGl~~sd~~~---~~~~~~~~Lt~rD~~~~~ 120 (160)
T cd00223 61 DPYGISILLTYKYGSIK---LAYESESLA-------------TP-DLRWLGLRPSDIIR---LPDLPLLPLSERDLKRAK 120 (160)
T ss_pred CCCCEEEEEEEEECCCC---CCCCCCCCC-------------CC-CCEEEECCHHHHHC---CCCCCCCCCCHHHHHHHH
T ss_conf 86610677888626622---312444455-------------88-72895076999860---673035879999999999
Q ss_pred HHHHCCC
Q ss_conf 9871899
Q gi|254780893|r 160 LLSLRKN 166 (236)
Q Consensus 160 ~L~~~~g 166 (236)
-|.+++-
T Consensus 121 ~ll~~~~ 127 (160)
T cd00223 121 SLLRRPR 127 (160)
T ss_pred HHHHCCC
T ss_conf 9871854
No 448
>PRK10870 transcriptional repressor MprA; Provisional
Probab=36.42 E-value=35 Score=15.52 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=19.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 22464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 148 i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
|.||++=..++.-+.. ...+..+.+|..=+.-+-..+.....+|-..|+.
T Consensus 115 V~LT~~G~~ll~~~lP------~~~~~~~~l~s~Ls~eE~~qL~~LL~KLL~~ld~ 164 (176)
T PRK10870 115 LQLTEKGHEFLREVLP------PQHNCLHQLWSALSTTEKDQLEQITRKLLTRLDQ 164 (176)
T ss_pred EEECHHHHHHHHHHHH------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8989889999999849------9999999987289999999999999999981877
No 449
>PRK05884 short chain dehydrogenase; Provisional
Probab=36.19 E-value=35 Score=15.50 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=40.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-HHCCCCEEEECCC
Q ss_conf 9599986998999999999998898999999989999999-8579947883114
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLG 53 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~-~~~~~DlvIlD~~ 53 (236)
||||+.---.-+...+...|-+.|++|..+.--++.++.. .+-..+.+.+|+.
T Consensus 1 ~~VlVTGgs~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~el~~~~~~~d~~ 54 (223)
T PRK05884 1 MEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNT 54 (223)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECC
T ss_conf 939998788799999999999879999999598789999985348768998527
No 450
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=36.04 E-value=35 Score=15.49 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++++-.++.+-.- .| .|..+|.+.+ ..+..||.++++|-|++|...
T Consensus 136 ~Lp~~~r~v~~L~~~-~~--~s~~EIA~~l-----~is~~tVk~~l~RAr~~Lr~~ 183 (187)
T PRK09641 136 QLPDKYRTVIVLKYI-EE--LSLKEISEIL-----DLPVGTVKTRIHRGREALRKQ 183 (187)
T ss_pred HCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 289888899999998-29--9899999998-----939999999999999999998
No 451
>COG5340 Predicted transcriptional regulator [Transcription]
Probab=36.03 E-value=35 Score=15.48 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=9.1
Q ss_pred CCCCCCCCCHHHHHHHHH
Q ss_conf 332224641168899987
Q gi|254780893|r 145 GHRIHLTGKEYQMIELLS 162 (236)
Q Consensus 145 g~~i~LT~~E~~lL~~L~ 162 (236)
|-.|..|..+--|..|+-
T Consensus 152 ~~~VpvttlaKTi~DC~~ 169 (269)
T COG5340 152 GTVVPVTTLAKTIVDCAD 169 (269)
T ss_pred EEEEEHHHHHHHHHHHHC
T ss_conf 355412788889998864
No 452
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=35.92 E-value=35 Score=15.47 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=23.7
Q ss_pred CEEEEEC-CC----HHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9599986-99----8999999999998898999999
Q gi|254780893|r 1 MRILLIE-DD----KALAHSIELMLKSENFNVYVTD 31 (236)
Q Consensus 1 mkILive-dd----~~~~~~l~~~L~~~g~~v~~a~ 31 (236)
|||+++- +. ......|...|.+.||+|..+.
T Consensus 1 MkI~i~~~P~~GG~e~~v~~La~~L~~~GHeV~vit 36 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFIT 36 (371)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 979998999998699999999999997599999995
No 453
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=35.87 E-value=35 Score=15.47 Aligned_cols=67 Identities=18% Similarity=-0.039 Sum_probs=30.1
Q ss_pred EEEEECCCHHH----HHHHHHHHHHCCC--EEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 59998699899----9999999998898--9999-------999899999998579947883114987433431112222
Q gi|254780893|r 2 RILLIEDDKAL----AHSIELMLKSENF--NVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRV 68 (236)
Q Consensus 2 kILivedd~~~----~~~l~~~L~~~g~--~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~ 68 (236)
||.++.+|..+ .+.+...+++.|. .+.. ..+....+..+....||+|++-.. ..+...++++.++
T Consensus 140 ~vaii~~d~~~G~~~~~~~~~~~~~~g~~~~vv~~~~~~~~~~D~s~~l~~i~~~~pd~v~~~~~--~~~~~~~~~q~~~ 217 (346)
T cd06330 140 TWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLW--GGDLVTFVRQANA 217 (346)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC--CHHHHHHHHHHHH
T ss_conf 89999389567799999999999861789658888825899864699999999679999999066--4579999999997
Q ss_pred CC
Q ss_conf 32
Q gi|254780893|r 69 AK 70 (236)
Q Consensus 69 ~~ 70 (236)
..
T Consensus 218 ~G 219 (346)
T cd06330 218 RG 219 (346)
T ss_pred CC
T ss_conf 49
No 454
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=35.87 E-value=35 Score=15.47 Aligned_cols=52 Identities=31% Similarity=0.390 Sum_probs=24.8
Q ss_pred EEEEECCCHH--HHHHHHHHHHHCCC----EEEEECC---HHHHHHHHHHCCCCEEEECCC
Q ss_conf 5999869989--99999999998898----9999999---899999998579947883114
Q gi|254780893|r 2 RILLIEDDKA--LAHSIELMLKSENF----NVYVTDL---GEDGIELCKFYEFDAIILDLG 53 (236)
Q Consensus 2 kILivedd~~--~~~~l~~~L~~~g~----~v~~a~~---~~eal~~~~~~~~DlvIlD~~ 53 (236)
||+++|-|+. +..+.....+...+ .+..+.+ ...+++......||+||+|..
T Consensus 32 ~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~~~~~~~D~VIIDtp 92 (231)
T PRK13849 32 RVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALADTH 92 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 5999968998688999987652589887752340565257899998875369988998189
No 455
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=35.73 E-value=35 Score=15.46 Aligned_cols=46 Identities=22% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 246411688999871899737899999987188777775303667899988511
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
.|++++-.++.+-.- .| .|..||.+.+ ..+..|+.+.++|-|+||.
T Consensus 10 ~L~~~~r~vl~l~y~-~~--~s~~EIa~~l-----gis~~tVk~~l~rA~~~Lr 55 (55)
T cd06171 10 KLPEREREVILLRFG-EG--LSYEEIAEIL-----GISRSTVRQRLHRALKKLR 55 (55)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCC
T ss_conf 399999898999998-09--9999999998-----9599999999999998758
No 456
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=35.54 E-value=17 Score=17.32 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=39.5
Q ss_pred ECCHHHHHH-HHHHCCCCEEEEC----------------CCCCCCCCCCCCCCC-CCCC--CCCCEECCCCCCCHHCCCC
Q ss_conf 999899999-9985799478831----------------149874334311122-2232--2331001333210000011
Q gi|254780893|r 30 TDLGEDGIE-LCKFYEFDAIILD----------------LGLTDIPGFEVLRAL-RVAK--ISTPVCILSGMSSIEDKVR 89 (236)
Q Consensus 30 a~~~~eal~-~~~~~~~DlvIlD----------------~~lp~~~G~~~~~~i-r~~~--~~~pII~ls~~~~~~~~~~ 89 (236)
+.+..+-+. .+....+|.|.+| +.+|-..|+..+... ...+ ..+.++.-.+..+..+.++
T Consensus 223 ~g~~~~~l~~~~~~~~~DfItIDG~eGGTGAaP~~~~d~~GlP~~~~l~~~~~~L~~~glr~~i~liasGgl~t~~di~k 302 (392)
T cd02808 223 AGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAK 302 (392)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 88988999999996479999960799875414299997499738999999999999769967637996388574789999
Q ss_pred CCCCCCCCCC
Q ss_conf 2322101112
Q gi|254780893|r 90 GLQSGADDYI 99 (236)
Q Consensus 90 al~~GAddyi 99 (236)
++..|||.+-
T Consensus 303 alaLGAD~v~ 312 (392)
T cd02808 303 ALALGADAVG 312 (392)
T ss_pred HHHHCCCHHH
T ss_conf 9986756451
No 457
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=35.43 E-value=36 Score=15.43 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHCCCEEEEE--CC--H---HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999999999889899999--99--8---999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVT--DL--G---EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a--~~--~---~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+.+.||++..+ ++ . .++++.+....+|.+|+--. ..+ -... .+.....+|++++...
T Consensus 16 ~~~~gie~~~~~~Gy~~~l~~~~~~~~~~~~~~i~~l~~~~vdGiI~~~~--~~~-~~~~--~~~~~~~iPvV~i~~~ 88 (264)
T cd01574 16 STLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP--LDD-ADAA--LAAAPADVPVVFVDGS 88 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC--CCC-HHHH--HHHHHCCCCEEEECCC
T ss_conf 99999999999849979999799998999999999999649999999168--899-6999--9998589968998667
No 458
>PRK09401 reverse gyrase; Reviewed
Probab=35.07 E-value=36 Score=15.39 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHCCCCEEE
Q ss_conf 8999999999998898999999989-999999857994788
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVTDLGE-DGIELCKFYEFDAII 49 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~~-eal~~~~~~~~DlvI 49 (236)
.+.+..+..+|+..|+++..+.+.. +.++.+..+..|++|
T Consensus 340 ~e~~~~~~~~l~~~g~~a~~~~~~~~~~le~f~~Ge~dvLv 380 (1176)
T PRK09401 340 KEYAEELKEYLESHGIKAEAYSGRKKEFLEKFEEGEIDVLI 380 (1176)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEE
T ss_conf 89999999999976966999605886688897578864899
No 459
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=35.00 E-value=36 Score=15.38 Aligned_cols=74 Identities=12% Similarity=0.233 Sum_probs=46.2
Q ss_pred CEEEEECCC----HHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC--CCCCC
Q ss_conf 959998699----8999999999998898999-9999899999998579947883114987433431112222--32233
Q gi|254780893|r 1 MRILLIEDD----KALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRV--AKIST 73 (236)
Q Consensus 1 mkILivedd----~~~~~~l~~~L~~~g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~--~~~~~ 73 (236)
||||++=.- ..++..+.+.-+..|.++. .|.+..+..+.+. .||++++--.+ .- ....+++ ....+
T Consensus 1 ~kVLl~Ca~GmSSs~la~~m~k~A~~~gi~~~i~A~~~~~~~d~~~--~yDvilLaPQv---~~--~~~~lk~~ad~~Gi 73 (99)
T cd05565 1 LNVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIP--DYDLVILAPQM---AS--YYDELKKDTDRLGI 73 (99)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHH--CCCEEEECHHH---HH--HHHHHHHHHHHCCC
T ss_conf 9099990798858999999999999819976999510344898870--79999998508---88--89999999998399
Q ss_pred CEECCCCC
Q ss_conf 10013332
Q gi|254780893|r 74 PVCILSGM 81 (236)
Q Consensus 74 pII~ls~~ 81 (236)
|++.+++.
T Consensus 74 ~v~~i~~~ 81 (99)
T cd05565 74 KLVTTTGK 81 (99)
T ss_pred EEEEECHH
T ss_conf 18870834
No 460
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=34.87 E-value=37 Score=15.37 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=53.0
Q ss_pred EEECCHHHHHHHHHHCCC-CEEEECCCC---CCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 999998999999985799-478831149---8743343111222232233100133321000001123221011122
Q gi|254780893|r 28 YVTDLGEDGIELCKFYEF-DAIILDLGL---TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 (236)
Q Consensus 28 ~~a~~~~eal~~~~~~~~-DlvIlD~~l---p~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~ 100 (236)
....|+.+....+...-+ .+.|.|++- ...+-+++++.|.+ ...+|+-+-.+-.+.++.-+.+++|||-.+.
T Consensus 26 ~~~gdP~~~a~~~~~~g~d~l~i~DLdaa~~~~~~n~~~I~~I~~-~~~~pi~vGGGIrs~~~~~~l~~~Ga~kvvi 101 (234)
T cd04732 26 VYSDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK-AVGIPVQVGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred EECCCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCHHHHHHHHHH-HCCCCEEECCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 757999999999998699989999675303089115999999997-6795689737717599999998648871897
No 461
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=34.64 E-value=28 Score=16.11 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3111222232233100133321000001123221011122332221
Q gi|254780893|r 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE 106 (236)
Q Consensus 61 ~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~KP~~~~ 106 (236)
+-++.||+.. ..|+|+=.- -+.++..+|.+.|||.-++.-..-+
T Consensus 203 ~di~~lr~~~-~~plivKGI-l~~~DA~~A~~~G~dgIiVSNHGGR 246 (344)
T cd02922 203 DDIKWLRKHT-KLPIVLKGV-QTVEDAVLAAEYGVDGIVLSNHGGR 246 (344)
T ss_pred HHHHHHHHHC-CCCEEECCC-CCHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999866-997010025-7799999999659988997188621
No 462
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=34.42 E-value=37 Score=15.33 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEE--CC--H---HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 899999999999889899999--99--8---999999985799478831149874334311122223223310013332
Q gi|254780893|r 10 KALAHSIELMLKSENFNVYVT--DL--G---EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 10 ~~~~~~l~~~L~~~g~~v~~a--~~--~---~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
..+...+...+++.||++..+ ++ . ++.++.+.....|-+|+--. ..+.-++.+.++ ...+|++++...
T Consensus 15 ~~l~~gi~~~~~~~GY~~~i~~~~~~~~~~~~~~~~~l~~~~vdGiIl~~~--~~~~~~~~~~l~--~~~iPvV~i~~~ 89 (270)
T cd01545 15 SEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP--LSDNPELLDLLD--EAGVPYVRIAPG 89 (270)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCHHHHHHHH--HCCCCEEEECCC
T ss_conf 999999999999849989999699999899999999999669998999478--889999999999--779979998788
No 463
>PRK02145 consensus
Probab=34.37 E-value=35 Score=15.48 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=55.0
Q ss_pred EEEEECCHHHHHHHHHHCCCC-EEEECCCCCC---CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 999999989999999857994-7883114987---433431112222322331001333210000011232210111223
Q gi|254780893|r 26 NVYVTDLGEDGIELCKFYEFD-AIILDLGLTD---IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK 101 (236)
Q Consensus 26 ~v~~a~~~~eal~~~~~~~~D-lvIlD~~lp~---~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~K 101 (236)
......|+.+....+...-.| +.|+|+.-.. ..-+++++.+.+ ...+|+-+-.+-.+.++.-+.|++|||-.+.-
T Consensus 26 ~~~~~gdP~~~a~~~~~~GadelhivDld~a~~~~~~~~~~I~~i~~-~~~iPi~vGGGIrs~e~~~~ll~~GadkVii~ 104 (257)
T PRK02145 26 ELRDAGDPVEIARRYDEQGADELTFLDITATSDGRDLILPIIEAVAS-QVFIPLTVGGGVRAVEDVRRLLNAGADKVSMN 104 (257)
T ss_pred CEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEH
T ss_conf 73888899999999998799989999788876675408999999996-56874896277304688999998199889841
Q ss_pred C
Q ss_conf 3
Q gi|254780893|r 102 P 102 (236)
Q Consensus 102 P 102 (236)
.
T Consensus 105 s 105 (257)
T PRK02145 105 S 105 (257)
T ss_pred H
T ss_conf 5
No 464
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=34.34 E-value=37 Score=15.32 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=22.5
Q ss_pred EEEEECCC--------HHHHHHHHHHHHHCCCEEEEE
Q ss_conf 59998699--------899999999999889899999
Q gi|254780893|r 2 RILLIEDD--------KALAHSIELMLKSENFNVYVT 30 (236)
Q Consensus 2 kILivedd--------~~~~~~l~~~L~~~g~~v~~a 30 (236)
|||+|-+. ......|...|.+.||+|..+
T Consensus 1 kIL~i~~~f~P~~GG~e~~~~~L~~~L~~~Gh~V~v~ 37 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVL 37 (357)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999938289989829999999999999779989999
No 465
>TIGR01929 menB naphthoate synthase; InterPro: IPR010198 This entry represents an enzyme, naphthoate synthase , MenB or dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Menaquinone (vitamin K2), is an essential quinone used in electron-transfer pathways serving as the major electron carrier during anaerobic growth. In the bacterium, the biosynthetic pathway in bacteria typically comprises 6-7 steps . Together with o-succinylbenzoate-CoA ligase (menE IPR010192 from INTERPRO),MenB takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoic acid (DHNA) , , , . The conversion of o-succinylbenzoate-CoA ligase to DHNA is mediated by the enzyme DHNA synthase, which is encoded by menB . The protein structure of naphthoate synthase has been expressed in Escherichia coli, purified and crystallized, and found to have fold characteristics of the crotonase family of enzymes, which is notable for the presence of several highly flexible regions around the active site. The C-terminal region of the protein may play a critical role both in completion of the binding pocket and in stabilisation of the hexamer, suggesting a link between oligomerization and catalytic activity . Included in this entry are two enzymes from Arabidopsis thaliana and one from Staphylococcus aureus, which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.; GO: 0008935 naphthoate synthase activity, 0009234 menaquinone biosynthetic process.
Probab=34.33 E-value=18 Score=17.25 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCCCCCEECCCCCC-CHHCCCCCCCCCCCCCCC-----------------CCCCCCCCC-CCCCCCCCCCCCCC------
Q ss_conf 32233100133321-000001123221011122-----------------332221111-12222222222222------
Q gi|254780893|r 69 AKISTPVCILSGMS-SIEDKVRGLQSGADDYIS-----------------KPFNKEELV-ARIRAIVRRSRGHA------ 123 (236)
Q Consensus 69 ~~~~~pII~ls~~~-~~~~~~~al~~GAddyi~-----------------KP~~~~eL~-ari~~llrr~~~~~------ 123 (236)
..+++.||+||+.+ +..+--+||.+|-|--|. .|.....|. .-++.++|-.+..-
T Consensus 45 ~~~~iGVv~LtG~GPsPkdG~~AFCsGGDQ~irg~~GgY~d~~G~tadtvdPara~~LnvL~~qr~IR~~PKpVia~V~G 124 (278)
T TIGR01929 45 EDPDIGVVILTGAGPSPKDGDKAFCSGGDQKIRGKSGGYIDESGVTADTVDPARASRLNVLEVQRLIRTLPKPVIAMVNG 124 (278)
T ss_pred CCCCCCEEEEECCCCCCCCCCEEEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECC
T ss_conf 79996279861767778888712653685237558775355787211333631246563465545864189816887537
Q ss_pred -----CCCC-CCCC------------------CCCC------CCCCCC-CCCCCCCCCCCCHHHHHHHHHH-CCCCCCCH
Q ss_conf -----2222-2222------------------2222------222222-3333322246411688999871-89973789
Q gi|254780893|r 124 -----QSLI-VTGD------------------LSVN------LDAKTV-EVQGHRIHLTGKEYQMIELLSL-RKNTTLTK 171 (236)
Q Consensus 124 -----~~~~-~~g~------------------~~~d------~~~~~v-~~~g~~i~LT~~E~~lL~~L~~-~~g~vvsr 171 (236)
.+++ ...+ -+|| .-.|.| .+.-++|=.+-+||.--+.... -.|.||..
T Consensus 125 ya~GGGh~Lh~~CDLTiAsre~A~fgQtgpkVGSFDgGyGsaYlAR~vGQKkaREiwFlcrqY~A~~a~~MG~VN~VV~~ 204 (278)
T TIGR01929 125 YAIGGGHVLHVVCDLTIASREHARFGQTGPKVGSFDGGYGSAYLARIVGQKKAREIWFLCRQYDAEEAEKMGLVNAVVPL 204 (278)
T ss_pred EEECCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEECCCCCCHHHHHHCCCCEEECCH
T ss_conf 53257620133230226532134014788773566563457899864055000110001563256889737953010035
Q ss_pred HHHHHHH--CCCCCCC-CCCHHHHHHHHHHHHHHH
Q ss_conf 9999987--1887777-753036678999885110
Q gi|254780893|r 172 EMFLNHL--YDGRDEP-EVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 172 ~~i~~~v--w~~~~~~-~~~tld~~I~rLRkKL~~ 203 (236)
++|.+.- |-.+-.. ++-+ ++=|+..|+.
T Consensus 205 a~Le~~~i~wa~~il~~SP~A----~R~lK~alNa 235 (278)
T TIGR01929 205 ADLEKETIEWAREILAKSPMA----IRMLKAALNA 235 (278)
T ss_pred HHHHHHHHHHHHHHHHCCCHH----HHHHHHHHCC
T ss_conf 445589999999986208467----9999987072
No 466
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=34.23 E-value=35 Score=15.46 Aligned_cols=11 Identities=18% Similarity=-0.106 Sum_probs=5.9
Q ss_pred CCCHHHHHHHH
Q ss_conf 37899999987
Q gi|254780893|r 168 TLTKEMFLNHL 178 (236)
Q Consensus 168 vvsr~~i~~~v 178 (236)
|=|-+|+.+.+
T Consensus 190 v~~~~q~~~a~ 200 (272)
T cd01573 190 VDSLEEALAAA 200 (272)
T ss_pred ECCHHHHHHHH
T ss_conf 39999999998
No 467
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.21 E-value=37 Score=15.31 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=52.6
Q ss_pred EECCHHHHHHHHHHCCCC-EEEECCCC---CCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 999989999999857994-78831149---87433431112222322331001333210000011232210111223
Q gi|254780893|r 29 VTDLGEDGIELCKFYEFD-AIILDLGL---TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK 101 (236)
Q Consensus 29 ~a~~~~eal~~~~~~~~D-lvIlD~~l---p~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~K 101 (236)
...|+.+....+.+.-.| +.|.|+.- ....-+++++.+.+. ..+|+-+-.+-.+.++.-+.|++|||-.+.-
T Consensus 29 ~~~dP~~~a~~~~~~Ga~~lhivDLd~a~~g~~~n~~~I~~i~~~-~~~pi~vGGGIrs~~~i~~~l~~Ga~kvvig 104 (240)
T PRK13585 29 SYGDPVEVAKRWVDAGAKTLHLVDLDGAFEGSRKNADIIEKIVEA-TDVSIQLGGGIRSVEDAASLLDLGVDRVILG 104 (240)
T ss_pred ECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 668999999999987999799998977211894449999999973-7977899788587999999997699899939
No 468
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=33.92 E-value=30 Score=15.91 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=24.6
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1333210000011232210111223322211111
Q gi|254780893|r 77 ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110 (236)
Q Consensus 77 ~ls~~~~~~~~~~al~~GAddyi~KP~~~~eL~a 110 (236)
.++...+.+....+|+.|+|+.+.+|-++.++..
T Consensus 122 ~v~~~~eA~~a~~~LE~GvdgV~l~~~d~~ei~~ 155 (347)
T PRK02290 122 GVADAEEAELALETLEKGVDGVLLDPDDPNELKA 155 (347)
T ss_pred EECCHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 9099999999998871287779988999899999
No 469
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=33.87 E-value=27 Score=16.19 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=39.9
Q ss_pred CEEEEECCCHHHHHHH---HHHHHH---CCCEEEE-E-------------------------------CCHHHHHHHHH-
Q ss_conf 9599986998999999---999998---8989999-9-------------------------------99899999998-
Q gi|254780893|r 1 MRILLIEDDKALAHSI---ELMLKS---ENFNVYV-T-------------------------------DLGEDGIELCK- 41 (236)
Q Consensus 1 mkILivedd~~~~~~l---~~~L~~---~g~~v~~-a-------------------------------~~~~eal~~~~- 41 (236)
|||||.-||--.+..| ...+.+ .|++|.. | .++.+|+.+.-
T Consensus 1 MrILiTNDDGi~a~Gi~aL~~~~~~~~~~~~~V~VvAP~~~~Sg~s~ait~~~pl~~~~~~~~~y~v~GTPaDCV~lal~ 80 (261)
T PRK13931 1 MRILITNDDGINAPGLEVLEQIATELAGPGGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRRFAAEGSPADCVLAALH 80 (261)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHH
T ss_conf 96999817999981799999999987328985999805999744542757899856776178736547882899999986
Q ss_pred ----HCCCCEEEECCCCCCCCCCCCC------CCCCCCCCCCCEECCC
Q ss_conf ----5799478831149874334311------1222232233100133
Q gi|254780893|r 42 ----FYEFDAIILDLGLTDIPGFEVL------RALRVAKISTPVCILS 79 (236)
Q Consensus 42 ----~~~~DlvIlD~~lp~~~G~~~~------~~ir~~~~~~pII~ls 79 (236)
..+||+||-.+|...--|.+++ ..+-..-..+|-|.+|
T Consensus 81 ~l~~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~Eg~~~gipsIAvS 128 (261)
T PRK13931 81 DVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALS 128 (261)
T ss_pred HHCCCCCCCEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEE
T ss_conf 433489988899676588765451433188899999998399957887
No 470
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=33.81 E-value=38 Score=15.27 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=17.1
Q ss_pred CCCCCCCCCEECCCCCCC---HHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222322331001333210---0000112322101112233222111
Q gi|254780893|r 66 LRVAKISTPVCILSGMSS---IEDKVRGLQSGADDYISKPFNKEEL 108 (236)
Q Consensus 66 ir~~~~~~pII~ls~~~~---~~~~~~al~~GAddyi~KP~~~~eL 108 (236)
++...+++|++.+|+-.+ .++++..|..+....+...|+-+-+
T Consensus 160 l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi 205 (590)
T COG0514 160 LRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNL 205 (590)
T ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCHH
T ss_conf 9851799977997378986789999998467886648715898523
No 471
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=33.66 E-value=38 Score=15.25 Aligned_cols=67 Identities=21% Similarity=0.161 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999999999889899999998------99999998579947883114987433-4311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPG-FEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G-~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...++..+++.||++..+.+. .+.++.+....+|.+|+-.. +.+. .+.++.++ ...+|++++...
T Consensus 16 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~e~~~i~~~~~~~vdgiI~~~~--~~~~~~~~~~~~~--~~~iPvV~~d~~ 89 (267)
T cd01536 16 AMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV--DSAALTPALKKAN--AAGIPVVTVDSD 89 (267)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHHH--HCCCCEEEEECC
T ss_conf 9999999999984999999969999999999999999759999999315--8415589999999--879969998256
No 472
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=33.65 E-value=38 Score=15.25 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 8989999999899999998579947883114987433431112222322331001333
Q gi|254780893|r 23 ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 23 ~g~~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
.+..|..+.+=.++...+.+..+|++||| ||++--+-- .++-|+++.+
T Consensus 120 ~~~~v~V~~~R~~~~~~l~~~~~dviIlD------DGfQh~~l~----rdl~Ivlid~ 167 (334)
T PRK00652 120 TGAPVAVSPDRVKAIKALLALGADIIILD------DGLQHYRLH----RDFEIVVVDG 167 (334)
T ss_pred CCCCEEEECCHHHHHHHHHHCCCCEEEEC------CCCCCCCCC----CCEEEEEECC
T ss_conf 89839995668999999996599999974------766566446----8879999747
No 473
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=33.42 E-value=39 Score=15.23 Aligned_cols=22 Identities=9% Similarity=-0.069 Sum_probs=10.8
Q ss_pred EECCHHHHHHHHHHCCCCEEEE
Q ss_conf 9999899999998579947883
Q gi|254780893|r 29 VTDLGEDGIELCKFYEFDAIIL 50 (236)
Q Consensus 29 ~a~~~~eal~~~~~~~~DlvIl 50 (236)
.++|.++|..++....+.+||=
T Consensus 122 ~f~~~~~A~~~l~~~~~p~VIK 143 (424)
T PRK00885 122 VFTDAEEAKAYLDEQGAPIVVK 143 (424)
T ss_pred EECCHHHHHHHHHHCCCCEEEE
T ss_conf 8689999999998579988996
No 474
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=33.39 E-value=39 Score=15.23 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=47.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECC-----------------------------HHHHHHHHHHCCCCEEEEC-
Q ss_conf 5999869989999999999988989999999-----------------------------8999999985799478831-
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENFNVYVTDL-----------------------------GEDGIELCKFYEFDAIILD- 51 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~~v~~a~~-----------------------------~~eal~~~~~~~~DlvIlD- 51 (236)
|||||=+......+.....++.+.....+.. .....+.+....+|++|+|
T Consensus 200 RvLIvvP~~L~~QW~~EL~~KF~L~f~i~D~~r~~~~~~~~~NpF~~~~~vI~Sld~l~~~~~~~e~l~~a~WDLVIVDE 279 (955)
T PRK04914 200 RVLIIVPETLQHQWLVEMLRRFNLRFSLFDEERCAEAQADADNPFETEQLVICSLDFLRKNKKRLEQALDAEWDLLVVDE 279 (955)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCCCCEEEEEHHHHCCCHHHHHHHHCCCCCEEEEHH
T ss_conf 79999277998999999999839980995518888753357997545897998789960396789987338988899713
Q ss_pred -CCC---CC--CCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf -149---87--433431112222322331001333210
Q gi|254780893|r 52 -LGL---TD--IPGFEVLRALRVAKISTPVCILSGMSS 83 (236)
Q Consensus 52 -~~l---p~--~~G~~~~~~ir~~~~~~pII~ls~~~~ 83 (236)
.++ ++ ...+.+++.+....+ -+++|||-..
T Consensus 280 AHhL~~~~~~~s~~y~lve~La~~~~--~lLLLTATP~ 315 (955)
T PRK04914 280 AHHLVWSEEAPSREYQVVEQLAEVIP--GVLLLTATPE 315 (955)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHCC--CEEEEECCCC
T ss_conf 44530588788879999999985159--7699847998
No 475
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=33.37 E-value=11 Score=18.41 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=45.3
Q ss_pred ECCHHHHHHHHHHCCCCEEEECCCCC--CCCCCCCCCCCCCCCCCCCEECCCCC-CCHHCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 99989999999857994788311498--74334311122223223310013332-100000-112322101112233222
Q gi|254780893|r 30 TDLGEDGIELCKFYEFDAIILDLGLT--DIPGFEVLRALRVAKISTPVCILSGM-SSIEDK-VRGLQSGADDYISKPFNK 105 (236)
Q Consensus 30 a~~~~eal~~~~~~~~DlvIlD~~lp--~~~G~~~~~~ir~~~~~~pII~ls~~-~~~~~~-~~al~~GAddyi~KP~~~ 105 (236)
..+..+|++.+.+-..-+=++.++.| --.|.+.++.+|+..|+.+|+.=..- +.-... -.+|++|||-..+--+..
T Consensus 12 ~~~l~~Al~ia~~~~~~vdiiEvGtpLi~~~G~~~V~~lr~~~p~k~I~aDlK~~D~g~~ea~~a~~aGAd~vtV~g~a~ 91 (216)
T PRK13306 12 NQDLDSALEDAKKVAEEVDIIEVGTILCLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAH 91 (216)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCHHHHHHCHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 89999999999972322899996859999858999999998789997999753236538999999972898899956689
Q ss_pred CCC
Q ss_conf 111
Q gi|254780893|r 106 EEL 108 (236)
Q Consensus 106 ~eL 108 (236)
.+-
T Consensus 92 ~~T 94 (216)
T PRK13306 92 IPT 94 (216)
T ss_pred HHH
T ss_conf 799
No 476
>PRK12533 RNA polymerase sigma factor; Provisional
Probab=33.31 E-value=39 Score=15.22 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++..-.+|.+- .--| +|.++|.+.+ .....||.++++|=|+||...
T Consensus 137 ~Lp~~~R~vl~Lr-~~eg--lS~~EIAeiL-----gip~gTVKSRL~RAR~~Lr~~ 184 (217)
T PRK12533 137 KLPVEYREVLVLR-ELED--MSYREIAAIA-----DVPVGTVMSRLARARRRLAAL 184 (217)
T ss_pred CCCHHHHHHHHHH-HHCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 0999886899999-9809--9999999998-----949999999999999999997
No 477
>PRK02747 consensus
Probab=33.31 E-value=37 Score=15.33 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=58.4
Q ss_pred EEEEECCHHHHHHHHHHCCCCEE-EECCCCCC---CCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 99999998999999985799478-83114987---433431112222322331001333210000011232210111223
Q gi|254780893|r 26 NVYVTDLGEDGIELCKFYEFDAI-ILDLGLTD---IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK 101 (236)
Q Consensus 26 ~v~~a~~~~eal~~~~~~~~Dlv-IlD~~lp~---~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~K 101 (236)
......++.+....+...-.|-+ ++|+.-.. ..-+++++++.+ ...+|+-+-.+-.+.++.-+.|++|||-.+.-
T Consensus 25 ~~~~~gdP~~~ak~~~~~Gadelh~vDl~~a~~~~~~~~~lI~~i~~-~~~ipi~vGGGIrs~e~~~~ll~~GadkViig 103 (257)
T PRK02747 25 DLRDAGDPVEAARAYDAAGADELCFLDITASHENRGTMLDVVARTAE-QCFMPLTVGGGVRTVDDIRKLLLAGADKVSIN 103 (257)
T ss_pred CEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 70788899999999998699989999476775675528999999998-66998898488207388789987699689834
Q ss_pred C--CCCCCCCCCC
Q ss_conf 3--2221111122
Q gi|254780893|r 102 P--FNKEELVARI 112 (236)
Q Consensus 102 P--~~~~eL~ari 112 (236)
. +.-.+|+..+
T Consensus 104 s~a~~np~l~~~~ 116 (257)
T PRK02747 104 SAAVARPEFVAEA 116 (257)
T ss_pred HHHHHCCHHHHHH
T ss_conf 4465483477778
No 478
>PRK12543 RNA polymerase sigma factor; Provisional
Probab=33.24 E-value=39 Score=15.21 Aligned_cols=46 Identities=24% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 246411688999871899737899999987188777775303667899988511
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
.|++..-.++.+-. -.| .|.++|.+.+ ..+..||.++++|-|+||.
T Consensus 129 ~Lp~~~R~vi~L~~-~~g--~s~~EIA~~l-----~is~~tVk~rl~rA~k~LR 174 (190)
T PRK12543 129 KLPYKLKQVIILRY-LHD--YSQEEVAQIL-----HIPIGTVKSRIHAALKKLR 174 (190)
T ss_pred CCCHHHHHHHHHHH-HCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
T ss_conf 49999999999999-859--9999999998-----9399999999999999999
No 479
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.22 E-value=39 Score=15.21 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 99999999999889899999--99899999998579947883114987433431112222322331001333
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVT--DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a--~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
.+...+...+.+.||++..+ .+..+....+.....|-+|+= +....-+.+..++ ...+|++++..
T Consensus 21 ~i~~gie~~~~~~gy~l~l~~~~~~~~~~~~~~~~~vDGiIi~---~~~~~~~~~~~l~--~~~iPvV~idr 87 (283)
T cd06279 21 QFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVY---GVPRDDPLVAALL--RRGLPVVVVDQ 87 (283)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHHH--HCCCCEEEECC
T ss_conf 9999999999984998999969999999999997799999991---7989989999998--57997899887
No 480
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=33.20 E-value=12 Score=18.21 Aligned_cols=174 Identities=17% Similarity=0.231 Sum_probs=92.5
Q ss_pred EEEEE-CCHHHHHHHHHH--------CCCCEEEEC-CCCCCCCCC-CCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCC
Q ss_conf 99999-998999999985--------799478831-149874334-3111222232233100133321000001123221
Q gi|254780893|r 26 NVYVT-DLGEDGIELCKF--------YEFDAIILD-LGLTDIPGF-EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSG 94 (236)
Q Consensus 26 ~v~~a-~~~~eal~~~~~--------~~~DlvIlD-~~lp~~~G~-~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~G 94 (236)
+++.| .||-+-+.-+.. .+|=+.|+| ++|-...+| .+++.| +.. +-=|+|+=|-.+.+-+-.-.-+.
T Consensus 89 EiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTL-EEP-P~hV~FIlATTE~~KiP~TIlSR 166 (363)
T TIGR02397 89 EIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTL-EEP-PEHVVFILATTEPHKIPATILSR 166 (363)
T ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH-CCC-CCCEEEEEECCCHHHCCCCCEEE
T ss_conf 8648656878899999873036875544335887323028656899987652-279-87628887348711205540210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC---CCCCCCCCC-C-----------CCC--CCCCCCC--CCCCCCCC
Q ss_conf 01112233222111112222222222222--22---222222222-2-----------222--2223333--32224641
Q gi|254780893|r 95 ADDYISKPFNKEELVARIRAIVRRSRGHA--QS---LIVTGDLSV-N-----------LDA--KTVEVQG--HRIHLTGK 153 (236)
Q Consensus 95 Addyi~KP~~~~eL~ari~~llrr~~~~~--~~---~~~~g~~~~-d-----------~~~--~~v~~~g--~~i~LT~~ 153 (236)
+--|-.|.++.+++..+++.++.+-.-.- .+ +-..++-++ | -.. ..+.+.. +.+-|+..
T Consensus 167 CQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~~~DG~i~~~~v~~~lGl~~~ 246 (363)
T TIGR02397 167 CQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGNGSDGKITYEDVNEMLGLVDE 246 (363)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH
T ss_conf 00312678998999999999998708831778999999962896106889999999826887886578999998357778
Q ss_pred HHHHHHHHHHCC-CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 168899987189-9737899999987188777775303667899988511
Q gi|254780893|r 154 EYQMIELLSLRK-NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 154 E~~lL~~L~~~~-g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
|+.+=.+-+-.. +.+..-=.+++.+........ +-+.-.+..+|..+-
T Consensus 247 ~~l~~l~~~~~~~~d~~~~l~~~~~~~~~G~~~~-~f~~~l~~~~~~~~~ 295 (363)
T TIGR02397 247 EKLIELLEAILNKRDTEEALKILDEILESGVDPE-KFLEDLIEFLRDLLL 295 (363)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHH
T ss_conf 9999999997538768899999999987288898-999999999999886
No 481
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=33.13 E-value=39 Score=15.20 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=35.3
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3222464116889998718997378999999871887777753036678999885
Q gi|254780893|r 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200 (236)
Q Consensus 146 ~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkK 200 (236)
.+..||..+|.+|..|..+.+ +|-.+|.+.+ ..+..|+--.+.||-+|
T Consensus 34 ~~~gLt~~Q~~vL~~L~~~~~--~t~~eLa~~l-----~id~~tvt~~ldrLe~~ 81 (144)
T PRK11512 34 SPLDITAAQFKVLCSIRCAAC--ITPVELKKVL-----SVDLGALTRMLDRLVCK 81 (144)
T ss_pred HHCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHC
T ss_conf 545999999999999998699--7999999997-----88887899999999978
No 482
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=33.10 E-value=39 Score=15.20 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEC----CCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999999999889899999998999999985799478831----149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILD----LGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~DlvIlD----~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.....|.+.|.+.|++|..++-. +.+|.+++. +..|-.+...+...++ .-..|+|+++..
T Consensus 14 ~vt~~l~~~l~~~G~~v~~~KPv---------~t~D~vlVEGaGG~~vPl~~~~~~~Dl~~--~l~~pvIlV~~~ 77 (134)
T cd03109 14 VATAILARALKEKGYRVAPLKPV---------QTYDFVLVEGAGGLCVPLKEDFTNADVAK--ELNLPAILVTSA 77 (134)
T ss_pred HHHHHHHHHHHHCCCCEEEECHH---------HCCCEEEEECCCCEEECCCCCCCHHHHHH--HHCCCEEEEECC
T ss_conf 99999999999779917787566---------72798999889774600389862999999--709998999778
No 483
>PRK12511 RNA polymerase sigma factor; Provisional
Probab=33.09 E-value=39 Score=15.20 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++..-.+|.+- .-.| .|..||.+.+ .....||.++++|-|++|...
T Consensus 111 ~Lp~~~R~vl~L~-~~eg--ls~~EIAe~L-----gis~gTVKsrl~RAr~~LR~~ 158 (182)
T PRK12511 111 DLPEEQRAALHLV-AIEG--LSYQEAANVL-----GIPIGTLMSRIGRARAALRAF 158 (182)
T ss_pred CCCHHHHHHEEEE-EECC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 6999895011241-0079--9999999998-----939999999999999999998
No 484
>PRK09638 RNA polymerase sigma factor SigY; Reviewed
Probab=33.07 E-value=39 Score=15.19 Aligned_cols=48 Identities=15% Similarity=-0.010 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++....++.+-.- .| .|..+|.+.+ ..+..||.++++|-|++|...
T Consensus 127 ~Lp~~~r~v~~L~~~-eg--~s~~EIA~~l-----~is~~tVk~~l~rA~~~Lr~~ 174 (177)
T PRK09638 127 KLPPELRAPFILKHY-YG--YTYEEIAKML-----GIPEGTVKSRVHHGLKKIRKE 174 (177)
T ss_pred CCCHHHHHHHHHHHH-CC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 599989899999999-19--9999999998-----939999999999999999998
No 485
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated
Probab=33.04 E-value=39 Score=15.19 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 246411688999871899737899999987188777775303667899988511
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~ 202 (236)
.|+++|..++.+.. ++..|-.+|.+.+ |-...-=.+.-.--+.+||++|.
T Consensus 183 ~L~~rEr~Ii~l~y---~~~~tl~eIa~~l-giS~eRVrQie~~AL~kLR~~L~ 232 (234)
T PRK06986 183 KLPEREQLVLSLYY---DEELNLKEIGAVL-GVSESRVSQIHSQAIKRLRARLG 232 (234)
T ss_pred HCCHHHHHHHHHHC---CCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 09999999999873---8998999999997-97899999999999999999875
No 486
>PRK00830 consensus
Probab=32.95 E-value=33 Score=15.62 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=55.1
Q ss_pred EEEEECCHHHHHHHHHHCCCCEE-EECCCCC---CCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 99999998999999985799478-8311498---7433431112222322331001333210000011232210111223
Q gi|254780893|r 26 NVYVTDLGEDGIELCKFYEFDAI-ILDLGLT---DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK 101 (236)
Q Consensus 26 ~v~~a~~~~eal~~~~~~~~Dlv-IlD~~lp---~~~G~~~~~~ir~~~~~~pII~ls~~~~~~~~~~al~~GAddyi~K 101 (236)
...+..|+.+....+..+-.|-+ ++|+.-. ...-+++++++.+ ...+||-+-.+-.+.++.-+.|++|||-.+.-
T Consensus 29 ~~~y~gdP~~~ak~~~~~gadelhivDld~a~~g~~~~~~~I~~i~~-~~~~pi~vGGGIrs~e~~~~ll~~GadkVvIg 107 (273)
T PRK00830 29 QLRYAGDPVELAKRYYEDGADELVFLDITASHEGRATMIDVIERTAE-EVFIPLTVGGGIRSIEDIRQILRAGADKVSVN 107 (273)
T ss_pred CCEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHH-HCCCCEEEECCEEECCCHHHHHHCCCCEEECH
T ss_conf 87578899999999998799989999532464688427999999998-66995896088437732899997698639837
No 487
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=32.80 E-value=40 Score=15.17 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=47.5
Q ss_pred EEEEECCCH---HHHHHHHHHHHHCCCEEEEECCH-------HHHHHHHHHCCCCEEEECCCCCCCCCC--CCCCCCCC-
Q ss_conf 599986998---99999999999889899999998-------999999985799478831149874334--31112222-
Q gi|254780893|r 2 RILLIEDDK---ALAHSIELMLKSENFNVYVTDLG-------EDGIELCKFYEFDAIILDLGLTDIPGF--EVLRALRV- 68 (236)
Q Consensus 2 kILivedd~---~~~~~l~~~L~~~g~~v~~a~~~-------~eal~~~~~~~~DlvIlD~~lp~~~G~--~~~~~ir~- 68 (236)
||.+|.-|. .-.+.|+.+-+..|..+..+.+. .++++....+.+|+|++|.. +.+.. +.+.++++
T Consensus 31 ~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~~D~IlIDTa--Gr~~~d~~~~~el~~~ 108 (196)
T pfam00448 31 KVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAENYDVVLVDTA--GRLQNDKNLMDELKKI 108 (196)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCHHHHHHHHHH
T ss_conf 28999758776889999999998639817814877787899999999988468999999899--9874767789999999
Q ss_pred ---CCCCCCEECCCCCCCHHC
Q ss_conf ---322331001333210000
Q gi|254780893|r 69 ---AKISTPVCILSGMSSIED 86 (236)
Q Consensus 69 ---~~~~~pII~ls~~~~~~~ 86 (236)
..|.-.++++++....++
T Consensus 109 ~~~~~~~~~~LVl~a~~~~~~ 129 (196)
T pfam00448 109 KRVIAPDEVLLVLDATTGQNA 129 (196)
T ss_pred HHHCCCCCEEEEEECCCCCCH
T ss_conf 852287302899856778213
No 488
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=32.78 E-value=40 Score=15.16 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=33.2
Q ss_pred HHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCEEEEECCCEEEECCCCCC
Q ss_conf 999987-1887777753036678999885110678-884388887820264568875
Q gi|254780893|r 173 MFLNHL-YDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKD 227 (236)
Q Consensus 173 ~i~~~v-w~~~~~~~~~tld~~I~rLRkKL~~~~~-~~~~I~tvrG~GY~l~~~~~~ 227 (236)
.+++.+ +.+-.-.+.+.++..|.-|++- .+..+ .-..+.|..|.||.+.+..+.
T Consensus 237 ~lFeelGf~YiGPiDGHni~~Li~~Lk~~-kd~~gPvllHv~T~KGKGY~pAE~d~~ 292 (627)
T COG1154 237 TLFEELGFNYIGPIDGHNLEELIPTLKNA-KDLKGPVLLHVVTKKGKGYKPAEEDPI 292 (627)
T ss_pred HHHHHHCCEEECCCCCCCHHHHHHHHHHH-HCCCCCEEEEEEECCCCCCCHHHCCHH
T ss_conf 25898187467885877899999999998-537998899999658888882354965
No 489
>PRK12518 RNA polymerase sigma factor; Provisional
Probab=32.76 E-value=40 Score=15.16 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 24641168899987189973789999998718877777530366789998851106
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 204 (236)
.|++.+-.++.+-.- .| .|.++|.+.+ ..+..||+++++|-|+||...
T Consensus 120 ~Lp~~~r~vi~l~~~-~~--~s~~EIA~~l-----~is~~tVk~~l~Ra~k~Lr~~ 167 (175)
T PRK12518 120 TLSLEHRAVLVLHDL-ED--LPQKEIAEIL-----NIPVGTVKSRLFYARRQLRKF 167 (175)
T ss_pred CCCHHHHHHHHHHHH-HC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 699999999999999-29--9999999998-----959999999999999999999
No 490
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=32.73 E-value=40 Score=15.16 Aligned_cols=77 Identities=21% Similarity=0.121 Sum_probs=49.5
Q ss_pred EEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99986998----9999999999988989999-------999899999998579947883114987433431112222322
Q gi|254780893|r 3 ILLIEDDK----ALAHSIELMLKSENFNVYV-------TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71 (236)
Q Consensus 3 ILivedd~----~~~~~l~~~L~~~g~~v~~-------a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~ 71 (236)
+.++.+|. .....+...+++.|..+.. ..|....+..+....||+|++= ....+...+++.+|+...
T Consensus 136 ~~~~~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~V~~~--~~~~~~~~~~k~~~~~G~ 213 (341)
T cd06341 136 VALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAAGADAIITV--LDAAVCASVLKAVRAAGL 213 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHCCC
T ss_conf 999935835889999999999997599545787448999877899999985696999990--684789999999997699
Q ss_pred CCCEECCCCC
Q ss_conf 3310013332
Q gi|254780893|r 72 STPVCILSGM 81 (236)
Q Consensus 72 ~~pII~ls~~ 81 (236)
..++++.+..
T Consensus 214 ~~~~~~~~~~ 223 (341)
T cd06341 214 TPKVVLSGTC 223 (341)
T ss_pred CCCEEEECCC
T ss_conf 9718995576
No 491
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.49 E-value=40 Score=15.13 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 99999999999889899999998------99999998579947883114987433431112222322331001333
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~ 80 (236)
.+...+...+++.||.+..+.+. .+.++.+.+..+|-+|+-... ...-+..+.++ ...+|++++..
T Consensus 16 ~~~~gi~~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~~vdGiIi~~~~--~~~~~~~~~~~--~~~iPvV~~~r 87 (269)
T cd06281 16 QLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD--ERDPELVDALA--SLDLPIVLLDR 87 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHH--HCCCCEEEEEC
T ss_conf 99999999999869989999689998999999999985799899976777--79999999998--47998899844
No 492
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.46 E-value=40 Score=15.13 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99999999999889899999998------999999985799478831149874334311122223223310013332
Q gi|254780893|r 11 ALAHSIELMLKSENFNVYVTDLG------EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81 (236)
Q Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~------~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~ 81 (236)
.+...+...+++.||++..+.+. .+.++.+....+|-+|+-...++. +.+..+. ...+|++++...
T Consensus 16 ~~~~~i~~~~~~~GY~~il~~s~~~~~~e~~~i~~l~~~~vdGiIl~~~~~~~---~~~~~~~--~~~~PvV~i~~~ 87 (269)
T cd06293 16 ELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPDD---GALAKLI--NSYGNIVLVDED 87 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH---HHHHHHH--HCCCCEEEEECC
T ss_conf 99999999999869989999789998999999999984699999980688997---9999999--659999999577
No 493
>PRK09644 RNA polymerase sigma factor SigM; Provisional
Probab=32.37 E-value=40 Score=15.12 Aligned_cols=47 Identities=23% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2464116889998718997378999999871887777753036678999885110
Q gi|254780893|r 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 (236)
Q Consensus 149 ~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~ 203 (236)
.|++..-.++.+-.-..- |..+|.+.+ ..+..||.++++|-|++|..
T Consensus 108 ~Lp~~~r~v~~L~~~~~~---s~~EIA~~l-----~is~~tVk~rl~RAr~~Lr~ 154 (165)
T PRK09644 108 TLPVIEAQAILLCDVHEL---TYEEAASVL-----DLKENTYKSHLFRGRKRLKA 154 (165)
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 299999999999999888---999999998-----93999999999999999999
No 494
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=32.34 E-value=14 Score=17.91 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCC--CCCCCCCCCCCCCCCCCCCEE--CCCCCCCHHCCCCCCCCCCC
Q ss_conf 989999999857994788311498--743343111222232233100--13332100000112322101
Q gi|254780893|r 32 LGEDGIELCKFYEFDAIILDLGLT--DIPGFEVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGAD 96 (236)
Q Consensus 32 ~~~eal~~~~~~~~DlvIlD~~lp--~~~G~~~~~~ir~~~~~~pII--~ls~~~~~~~~~~al~~GAd 96 (236)
+..+|+.....-...+=|+.++.| -..|+..++.+|+..|+..|+ +=|.-...-..-.+|++|||
T Consensus 14 ~l~~A~~~a~~v~~~vDIIE~GTpLik~~G~~aV~~lr~~~P~~~IvAD~Kt~DaG~~Ea~~a~~aGAD 82 (220)
T PRK13305 14 SLEAAQRDVALLQDHVDIVEAGTILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGAN 82 (220)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 999999999983046889990879999842999999998789987998754526259999999865998
No 495
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=32.32 E-value=40 Score=15.12 Aligned_cols=51 Identities=29% Similarity=0.287 Sum_probs=0.0
Q ss_pred EEEEECCCHH--HHHHHHHHHHHCC-------CEEEEECCHHHHHHHHHHCCCCEEEECC
Q ss_conf 5999869989--9999999999889-------8999999989999999857994788311
Q gi|254780893|r 2 RILLIEDDKA--LAHSIELMLKSEN-------FNVYVTDLGEDGIELCKFYEFDAIILDL 52 (236)
Q Consensus 2 kILivedd~~--~~~~l~~~L~~~g-------~~v~~a~~~~eal~~~~~~~~DlvIlD~ 52 (236)
+|+++|-|+. +..+-....+... +.+.........++.+....||.||+|.
T Consensus 32 ~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~yD~VIIDt 91 (231)
T pfam07015 32 RVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEGSGFDYALADT 91 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 599996899868899999876468888765222056601589999988657999899839
No 496
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=32.22 E-value=40 Score=15.11 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=0.0
Q ss_pred CEEEEECCC--HHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 959998699--89999999999988989999999
Q gi|254780893|r 1 MRILLIEDD--KALAHSIELMLKSENFNVYVTDL 32 (236)
Q Consensus 1 mkILivedd--~~~~~~l~~~L~~~g~~v~~a~~ 32 (236)
|||.|-.|+ ..+-+.|..+|+..||+|.-...
T Consensus 1 MkI~igsDHaG~~lK~~l~~~L~~~g~~v~D~G~ 34 (149)
T PRK05571 1 MKIAIGSDHAGFELKEEIIEHLEEKGHEVIDLGP 34 (149)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 9799985872799999999999978998997699
No 497
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=32.09 E-value=41 Score=15.10 Aligned_cols=57 Identities=26% Similarity=0.292 Sum_probs=0.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 599986998999999999998898-999999989999999857994788311498743
Q gi|254780893|r 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 (236)
Q Consensus 2 kILivedd~~~~~~l~~~L~~~g~-~v~~a~~~~eal~~~~~~~~DlvIlD~~lp~~~ 58 (236)
+|.-||-++.+...-...|+..|+ ++.....+.-...+-...+||.|++....+...
T Consensus 99 ~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~~~apfD~Iiv~aa~~~iP 156 (205)
T PRK13944 99 KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP 156 (205)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 1799953699999999999985986330679765565774349804899985077689
No 498
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=31.92 E-value=41 Score=15.08 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCC--EEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC-HHCC
Q ss_conf 99999999998898--999-9999899999998579947883114987433431112222322331001333210-0000
Q gi|254780893|r 12 LAHSIELMLKSENF--NVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS-IEDK 87 (236)
Q Consensus 12 ~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pII~ls~~~~-~~~~ 87 (236)
+.+.++..=+..+| .|. .++|.+|+.+.+..+ .|+|.|| +|+.-++.+.++......|-+++=+.+. ..+.
T Consensus 172 ~~~Av~~aR~~~~~~~kiEVEVenlE~a~eA~~AG-ADiImLD----Nm~p~~~~~av~~~~~~~p~~~~EaSGGitl~n 246 (276)
T TIGR00078 172 IEKAVKRARAALPFAKKIEVEVENLEEAEEAAEAG-ADIIMLD----NMKPEEIKEAVELLKGRNPNVLVEASGGITLDN 246 (276)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCC-CCEEECC----CCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHH
T ss_conf 89999999984899807998628989999999709-9599806----989479999999997029908999836998789
Q ss_pred CCCCCCCCCCCC
Q ss_conf 112322101112
Q gi|254780893|r 88 VRGLQSGADDYI 99 (236)
Q Consensus 88 ~~al~~GAddyi 99 (236)
+..|..-.-|||
T Consensus 247 ~~~ya~~gVD~I 258 (276)
T TIGR00078 247 IEEYAETGVDVI 258 (276)
T ss_pred HHHHHHCCCCEE
T ss_conf 999840897588
No 499
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=31.80 E-value=41 Score=15.07 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHHC------CCEEE-EECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 999869989999999999988------98999-99998999999985799478831149874334311122223223310
Q gi|254780893|r 3 ILLIEDDKALAHSIELMLKSE------NFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75 (236)
Q Consensus 3 ILivedd~~~~~~l~~~L~~~------g~~v~-~a~~~~eal~~~~~~~~DlvIlD~~lp~~~G~~~~~~ir~~~~~~pI 75 (236)
|||=|.+..+...+...++.. ...+. .+.|.+++.+.+. ..+|.|.|| .++.-++-+.+......+ .
T Consensus 155 iLikdNHi~~~g~i~~av~~~r~~~~~~~~IeVEv~s~~e~~~a~~-~gadiI~LD----n~spe~~~~~v~~~~~~v-~ 228 (268)
T cd01572 155 VLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALE-AGADIIMLD----NMSPEELREAVALLKGRV-L 228 (268)
T ss_pred EEEEHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH-CCCCEEEEC----CCCHHHHHHHHHHHCCCE-E
T ss_conf 8882427876378999999999867998529999488999999997-599999977----999999999999866956-9
Q ss_pred ECCCCCCCHHCCCCCCCCCCC
Q ss_conf 013332100000112322101
Q gi|254780893|r 76 CILSGMSSIEDKVRGLQSGAD 96 (236)
Q Consensus 76 I~ls~~~~~~~~~~al~~GAd 96 (236)
+-.|+-=+.+....--..|+|
T Consensus 229 ieaSGgIn~~ni~~ya~~GvD 249 (268)
T cd01572 229 LEASGGITLENIRAYAETGVD 249 (268)
T ss_pred EEEECCCCHHHHHHHHHCCCC
T ss_conf 999899989999999975999
No 500
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=31.75 E-value=41 Score=15.06 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9599986998999999999998898999999
Q gi|254780893|r 1 MRILLIEDDKALAHSIELMLKSENFNVYVTD 31 (236)
Q Consensus 1 mkILivedd~~~~~~l~~~L~~~g~~v~~a~ 31 (236)
||||+.=+... +..+...|++.||++..+.
T Consensus 1 MrILvTRP~~~-a~~l~~~L~~~G~~~~~~P 30 (237)
T PRK09189 1 MRVLVTRPEPS-AERTAARLRAMGHEPVLLP 30 (237)
T ss_pred CEEEEECCHHH-HHHHHHHHHHCCCCEEECC
T ss_conf 93999386777-9999999997799899878
Done!