HHsearch alignment for GI: 254780893 and conserved domain: pfam08279
>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=96.47 E-value=0.0066 Score=37.92 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEE
Q ss_conf 11688999871899737899999987188777775303667899988511067888438888782026
Q gi|254780893|r 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 (236)
Q Consensus 153 ~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~ 220 (236)
T Consensus 1 R~~~il~~L~~~~~~-vt~~~La~~l-----~VSr~TV~rdi~~L~~~G-------~~I~s~~g~GY~ 55 (55)
T pfam08279 1 RLLQILELLLQAREP-ISGQELAEKL-----GVSRRTIRRDIKALEALG-------VPIESEPGRGYR 55 (55)
T ss_pred CHHHHHHHHHHCCCC-CCHHHHHHHH-----CCCHHHHHHHHHHHHHCC-------CCEEECCCCCCC
T ss_conf 989999999976999-1899999996-----988999999999999889-------978846899998