HHsearch alignment for GI: 254780893 and conserved domain: pfam08279

>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=96.47  E-value=0.0066  Score=37.92  Aligned_cols=55  Identities=25%  Similarity=0.256  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEE
Q ss_conf             11688999871899737899999987188777775303667899988511067888438888782026
Q gi|254780893|r  153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV  220 (236)
Q Consensus       153 ~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~  220 (236)
T Consensus         1 R~~~il~~L~~~~~~-vt~~~La~~l-----~VSr~TV~rdi~~L~~~G-------~~I~s~~g~GY~   55 (55)
T pfam08279         1 RLLQILELLLQAREP-ISGQELAEKL-----GVSRRTIRRDIKALEALG-------VPIESEPGRGYR   55 (55)
T ss_pred             CHHHHHHHHHHCCCC-CCHHHHHHHH-----CCCHHHHHHHHHHHHHCC-------CCEEECCCCCCC
T ss_conf             989999999976999-1899999996-----988999999999999889-------978846899998