HHsearch alignment for GI: 254780893 and conserved domain: smart00862
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=99.72 E-value=1.6e-17 Score=125.89 Aligned_cols=77 Identities=36% Similarity=0.605 Sum_probs=69.7
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEE
Q ss_conf 332224641168899987189973789999998718877-77753036678999885110678884388887820264
Q gi|254780893|r 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 (236)
Q Consensus 145 g~~i~LT~~E~~lL~~L~~~~g~vvsr~~i~~~vw~~~~-~~~~~tld~~I~rLRkKL~~~~~~~~~I~tvrG~GY~l 221 (236)
T Consensus 1 g~~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~~l~~~I~~LR~kl~~~~~~~~~i~t~~g~GY~l 78 (78)
T smart00862 1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLEDDGANPRLIETVRGVGYRL 78 (78)
T ss_pred CCEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 957324899999999998479962969999987628887888860278999999999764589999599837956449