RPSBLAST alignment for GI: 254780893 and conserved domain: TIGR03787

>gnl|CDD|163499 TIGR03787, marine_sort_RR, proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator. Length = 227
 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 18/229 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPG 59
           RI ++ED+ A+  +    LK + + V         ++  +    D  I+D+GL +    G
Sbjct: 2   RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F + + LR    + P+  L+   S  D V GL+ GADDY++K  +   L+ARI A+ RR+
Sbjct: 62  FMLCQDLRSLSATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      LI  G L+++ D  TV  Q   I LT  E+ M+  L+       +++  
Sbjct: 122 EALQKPQKQDDLITRGPLTLDSDRMTVFWQDQPIDLTVTEFWMVHALAKHPGHVKSRQQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFIC----KLRKKLSNAAGGKNYIETVWGRGY 219
           +       D  ++ + D  I     ++RKK        + I+TV+G GY
Sbjct: 182 M-------DAAKIVVDDSTITSHIKRIRKKFQAVDDNFDCIQTVYGMGY 223