RPSBLAST alignment for GI: 254780893 and conserved domain: TIGR03787
>gnl|CDD|163499 TIGR03787, marine_sort_RR, proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator. Length = 227
Score = 85.2 bits (211), Expect = 2e-17
Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 18/229 (7%)
Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPG 59
RI ++ED+ A+ + LK + + V ++ + D I+D+GL + G
Sbjct: 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGG 61
Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
F + + LR + P+ L+ S D V GL+ GADDY++K + L+ARI A+ RR+
Sbjct: 62 FMLCQDLRSLSATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121
Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
+ LI G L+++ D TV Q I LT E+ M+ L+ +++
Sbjct: 122 EALQKPQKQDDLITRGPLTLDSDRMTVFWQDQPIDLTVTEFWMVHALAKHPGHVKSRQQL 181
Query: 175 LNHLYDGRDEPEVKIIDVFIC----KLRKKLSNAAGGKNYIETVWGRGY 219
+ D ++ + D I ++RKK + I+TV+G GY
Sbjct: 182 M-------DAAKIVVDDSTITSHIKRIRKKFQAVDDNFDCIQTVYGMGY 223