RPSBLAST alignment of GI: 254780893 and protein with PDBid: 1kgs

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Length = 225

 Score =  166 bits (421), Expect = 3e-42
 Identities = 88/223 (39%), Positives = 133/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED++ LA  I   LK E F V V   GE+G+ +     FD +ILD+ L    G+
Sbjct: 3   VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+++R + ++TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 63  EILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL ++   K        I LT KEYQ++E L + KN  +TKE    HL+ 
Sbjct: 123 ESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE    ++   I  LRKK+ +    K  I TV G GYV R+
Sbjct: 183 FDDEVFSDVLRSHIKNLRKKV-DKGFKKKIIHTVRGIGYVARD 224