RPSBLAST alignment of GI: 254780893 and protein with PDBid: 1s8n
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205
Score = 112 bits (281), Expect = 6e-26
Identities = 37/177 (20%), Positives = 80/177 (45%), Gaps = 8/177 (4%)
Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
R+L+ ED+ + + ML+ E + + G++ +EL + ++ D +I+D+ + G
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGI 74
Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
+ + +K P+ +L+ S + R +GA Y+ KPF+ +L+ I V R R
Sbjct: 75 DAASEIA-SKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133
Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLT------GKEYQMIELLSLRKNTTLTK 171
LS L+ + + + + T ++ I+ ++ + TT+ +
Sbjct: 134 EITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKR 190