RPSBLAST alignment of GI: 254780893 and protein with PDBid: 2hqr
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} Length = 223
Score = 100 bits (250), Expect = 2e-22
Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%)
Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
MR+LLIE + L IE L + F VT+ EDG L +D +++
Sbjct: 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVS 60
Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
+ + + + +G + +
Sbjct: 61 RIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNV 120
Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
DL+++ D + + +G + + GK ++++ L+ ++ ++KE L+ +++
Sbjct: 121 IEIG------DLTISPDEEKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWE 174
Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
+ +I+V I ++R+K+ + G + +ETV RGY
Sbjct: 175 EPEMVTPNVIEVAINQIRQKM-DKPLGISTVETVRRRGYRFCY 216