RPSBLAST alignment of GI: 254780893 and protein with PDBid: 3cnb

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Length = 143

 Score =  107 bits (269), Expect = 2e-24
 Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 4/128 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
             IL+IEDDK  A  +   L++      + +     D  +L    + D ++LDL +  + 
Sbjct: 9   FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMD 68

Query: 59  GFEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           GF +   ++   A  +  V  ++G  + ++  R +  GA+    KP N   L   I+ +V
Sbjct: 69  GFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLV 128

Query: 117 RRSRGHAQ 124
            + +  ++
Sbjct: 129 EQKKATSE 136