RPSBLAST alignment of GI: 254780893 and protein with PDBid: 3hdv
>3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440} Length = 136
Score = 113 bits (283), Expect = 4e-26
Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
+L+++D+ ++ L LKS + D E+ L +I DL + G
Sbjct: 9 LVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGL 68
Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
+++R +R ++ + + ++SG + +E+ V + G D++ KP + +L+ + ++
Sbjct: 69 DLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128
Query: 120 RG 121
G
Sbjct: 129 EG 130