BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] (236 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Score = 481 bits (1239), Expect = e-138, Method: Compositional matrix adjust. Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF Sbjct: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR Sbjct: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD Sbjct: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 >gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 223 Score = 70.9 bits (172), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 21/196 (10%) Query: 28 YVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGFEVL------RALRVAKI-----STP 74 Y+ G+DG+ L F EF+ + D+ E + L + +I P Sbjct: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGD 131 + +S S++ + SG DD ++KP + E++AR+ AI RR S A+ TG Sbjct: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKII 190 + V D + EVQG L +E +++E L + + K + +Y DE E ++ Sbjct: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 Query: 191 DVFICKLRKKLSNAAG 206 + I KLRKKL N G Sbjct: 191 ESHISKLRKKLRNKLG 206 >gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 123 Score = 41.2 bits (95), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 55/105 (52%), Gaps = 2/105 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +++++ED++ ++++ + T G + +EL + ++ D II+D+ L +I G E Sbjct: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 + + ++ PV ++ + D+ R + G + YISKP + Sbjct: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108 >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 37.7 bits (86), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +LL+ED+ ++ + ML++ + V+ G D +++ + + D +I D+ + ++ G Sbjct: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGP 743 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKV-RGLQSGAD-DYISKPFNKEELVARIRAIVR 117 +LR LR S +SG + ED + L A ++SKPF+ ++L + +++ Sbjct: 744 TLLRELRKTYPSLKFIFISGYA--EDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 >gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 133 Score = 29.6 bits (65), Expect = 0.047, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAI--VRRSRGHAQSL 126 E + G ++GA+ ++ KPFN+E L +R + +++S+ Q L Sbjct: 86 FEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130 >gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 122 Score = 26.6 bits (57), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/111 (19%), Positives = 45/111 (40%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL EDD + + L + V + G + + F ++ D+ + ++ G E Sbjct: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + R V ++G +++ +SKPF+ +LV + Sbjct: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 26.6 bits (57), Expect = 0.44, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 29/52 (55%) Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 +A++ ++TP IL+ + I++ R L + + K +KEEL A + A+ Sbjct: 134 KAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYAL 185 >gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus str. psy62] Length = 499 Score = 24.6 bits (52), Expect = 1.7, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 73 TPVCILSGMSSIEDKVR 89 TP CILS SI++ R Sbjct: 96 TPFCILSSWKSIQENFR 112 >gi|254780238|ref|YP_003064651.1| 30S ribosomal protein S11 [Candidatus Liberibacter asiaticus str. psy62] Length = 129 Score = 24.3 bits (51), Expect = 1.9, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 80 GMSSIEDKVRGLQSGADDYI 99 GMSS+E KV GL +G D + Sbjct: 78 GMSSLEVKVSGLGAGRDSAL 97 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 22.3 bits (46), Expect = 6.7, Method: Compositional matrix adjust. Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGA 95 +PG ++++L+ AK S P+ +L + + +RG S A Sbjct: 419 MPG-RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAA 456 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 146,792 Number of Sequences: 1233 Number of extensions: 5614 Number of successful extensions: 20 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 12 length of query: 236 length of database: 328,796 effective HSP length: 71 effective length of query: 165 effective length of database: 241,253 effective search space: 39806745 effective search space used: 39806745 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)