BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780893|ref|YP_003065306.1| two component response
regulator [Candidatus Liberibacter asiaticus str. psy62]
         (236 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 236

 Score =  481 bits (1239), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF
Sbjct: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR
Sbjct: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD
Sbjct: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA
Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236


>gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 223

 Score = 70.9 bits (172), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 21/196 (10%)

Query: 28  YVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGFEVL------RALRVAKI-----STP 74
           Y+   G+DG+ L  F   EF+  +      D+   E        + L + +I       P
Sbjct: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGD 131
           +  +S   S++  +    SG DD ++KP +  E++AR+ AI RR   S   A+    TG 
Sbjct: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKII 190
           + V  D +  EVQG    L  +E +++E L   +   + K    + +Y   DE  E  ++
Sbjct: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190

Query: 191 DVFICKLRKKLSNAAG 206
           +  I KLRKKL N  G
Sbjct: 191 ESHISKLRKKLRNKLG 206


>gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 123

 Score = 41.2 bits (95), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +++++ED++        ++++  +    T  G + +EL + ++ D II+D+ L +I G E
Sbjct: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           + + ++        PV  ++  +   D+ R  + G + YISKP +
Sbjct: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 37.7 bits (86), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 6/119 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +LL+ED+ ++    + ML++  + V+    G D +++ +  +   D +I D+ + ++ G 
Sbjct: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGP 743

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKV-RGLQSGAD-DYISKPFNKEELVARIRAIVR 117
            +LR LR    S     +SG +  ED   + L   A   ++SKPF+ ++L   +  +++
Sbjct: 744 TLLRELRKTYPSLKFIFISGYA--EDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800


>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 133

 Score = 29.6 bits (65), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAI--VRRSRGHAQSL 126
            E  + G ++GA+ ++ KPFN+E L   +R +  +++S+   Q L
Sbjct: 86  FEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130


>gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 122

 Score = 26.6 bits (57), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/111 (19%), Positives = 45/111 (40%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL EDD  +   +   L    + V   + G    +  +   F  ++ D+ + ++ G E
Sbjct: 4   KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + R          V  ++G +++              +SKPF+  +LV  +
Sbjct: 64  LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1162

 Score = 26.6 bits (57), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           +A++   ++TP  IL+  + I++  R L     + + K  +KEEL A + A+
Sbjct: 134 KAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYAL 185


>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 499

 Score = 24.6 bits (52), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 73  TPVCILSGMSSIEDKVR 89
           TP CILS   SI++  R
Sbjct: 96  TPFCILSSWKSIQENFR 112


>gi|254780238|ref|YP_003064651.1| 30S ribosomal protein S11 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 129

 Score = 24.3 bits (51), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 80 GMSSIEDKVRGLQSGADDYI 99
          GMSS+E KV GL +G D  +
Sbjct: 78 GMSSLEVKVSGLGAGRDSAL 97


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 22.3 bits (46), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGA 95
           +PG  ++++L+ AK S P+ +L  +  +   +RG  S A
Sbjct: 419 MPG-RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAA 456


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.138    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,792
Number of Sequences: 1233
Number of extensions: 5614
Number of successful extensions: 20
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 12
length of query: 236
length of database: 328,796
effective HSP length: 71
effective length of query: 165
effective length of database: 241,253
effective search space: 39806745
effective search space used: 39806745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)