HHsearch alignment for GI: 254780894 and conserved domain: TIGR02473
>TIGR02473 flagell_FliJ flagellar export protein FliJ; InterPro: IPR012823 Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Closely related sequences include both probable FliJ proteins and components of bacterial type III secretion systems.; GO: 0006935 chemotaxis, 0016020 membrane, 0044461 flagellin-based flagellum part.
Probab=97.40 E-value=0.0065 Score=39.07 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6788899999889999999999999999999999999999999---------9999715770014318999999999999
Q gi|254780894|r 3 LQEQRTRLKEFRLNDERRQLQQLRATILEFRRIVADLEKQIAI---------EERQVGIYDKDHFAYPILAKSARQRIDN 73 (103)
Q Consensus 3 sretLIRLk~fqVdEkRR~laql~~m~~ef~~~~~~LE~qI~~---------Ee~~agi~d~~hFaY~tfAraa~~RRdn 73 (103)
T Consensus 3 ~L~~ll~lr~~~e~---~~~~~l~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~g~s~~~~~~~~~f~~~l~~~i~~ 79 (141)
T TIGR02473 3 RLQKLLDLREKEEE---QAKLELAKAQAEFERLETQLQQLIKYREEYEQQANEKVQSGTSAAELSNYQRFIRQLDEAIQQ 79 (141)
T ss_pred CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 07899999999999---999999999888888888888888888889999887631699999999898888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999997422
Q gi|254780894|r 74 LLLSIRDLLLRQESLESHLESESNSDKSV 102 (103)
Q Consensus 74 L~~Si~~l~~Q~e~a~~~L~~a~~~~k~~ 102 (103)
T Consensus 80 q~~~~~~~~~~~e~~r~~l~~~~~e~k~~ 108 (141)
T TIGR02473 80 QQQELALLEKELEAKRERLLEAAKERKAL 108 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88888888888888888889999999999