RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780894|ref|YP_003065307.1| hypothetical protein
CLIBASIA_03955 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting;
          3.50A {Bos taurus} (A:103-390)
          Length = 288

 Score = 31.9 bits (70), Expect = 0.031
 Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 5  EQRTRLKEFRLNDERRQLQQLRATILEFRRIV----ADLEKQIAIEERQ 49
                 +    D R +++ LR  ++E  + +     ++  Q+   +R 
Sbjct: 3  NNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRL 51


>2hu5_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase,
          beta-propeller, enzyme-inhibitor complex; HET: PHE;
          2.00A {Aeropyrum pernix} (A:1-22,A:325-582)
          Length = 280

 Score = 25.9 bits (55), Expect = 1.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 30 LEFRRIVADLEKQIAIEERQVGIYDKDHFAYP 61
          +EF RIV D+E+ IA++ R+  I         
Sbjct: 7  VEFSRIVRDVERLIAVDLRRS-IAGSRLVWVE 37


>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 25.6 bits (56), Expect = 2.3
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 12 EFRLNDERRQLQQLRATILEFR-RIVADLEKQIA-IEERQVGIYDKDHFAYPILAKSARQ 69
          ++R    +RQL    A I ++    +  L+ +   I       +  +     I  ++  Q
Sbjct: 27 KYR----KRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTRE-IHNEAESQ 81

Query: 70 RID 72
             
Sbjct: 82 LRA 84


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.134    0.345 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 686,533
Number of extensions: 28775
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 59
Length of query: 103
Length of database: 4,956,049
Length adjustment: 61
Effective length of query: 42
Effective length of database: 2,893,944
Effective search space: 121545648
Effective search space used: 121545648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)