RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780894|ref|YP_003065307.1| hypothetical protein
CLIBASIA_03955 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 16/60 (26%)

Query: 57  HFAYPI--LAKSARQ-RIDNL------LLSIRDLLLRQESLESHLESESNS----DKSVS 103
           + AYP   L  S  +  ++N       +LSI +  L QE ++ ++  ++NS     K V 
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISN--LTQEQVQDYVN-KTNSHLPAGKQVE 367


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.2 bits (77), Expect = 0.008
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 23/50 (46%)

Query: 18 ERRQLQQLRATILEFRRIVADLEKQIAIEERQVGIYDKDHFAYPILAKSA 67
          E++ L++L+A++    ++ AD               D    + P LA  A
Sbjct: 18 EKQALKKLQASL----KLYAD---------------D----SAPALAIKA 44


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.2 bits (59), Expect = 0.84
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 12/70 (17%)

Query: 4   QEQRTRLKEFRLNDERRQLQQLRATILEFR-RIVADLEKQIAIEERQVGIYDKDHFAYPI 62
           +EQR RL+E  L+   + ++Q      E+R +   DLE+     +RQ    +K+     I
Sbjct: 92  EEQRKRLQE--LDAASKVMEQ------EWREKAKKDLEEW---NQRQSEQVEKNKINNRI 140

Query: 63  LAKSARQRID 72
             K+  Q+ D
Sbjct: 141 ADKAFYQQPD 150


>2hu5_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase,
          beta-propeller, enzyme-inhibitor complex; HET: PHE;
          2.00A {Aeropyrum pernix} SCOP: b.69.7.2 c.69.1.33 PDB:
          1ve7_A* 1ve6_A* 2hu7_A* 2hu8_A* 2qr5_A 2qzp_A
          Length = 582

 Score = 26.9 bits (58), Expect = 1.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 31 EFRRIVADLEKQIAIEERQV-GIYDKDHFAY 60
          EF RIV D+E+ IA+E+  + G+ D D    
Sbjct: 8  EFSRIVRDVERLIAVEKYSLQGVVDGDKLLV 38


>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
           protein, heme protein, iron sulfur protein,
           oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL;
           1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
           2h89_A* 1zoy_A* 1zp0_A*
          Length = 621

 Score = 24.4 bits (52), Expect = 7.0
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 1   MRLQEQRTRLKEFRLNDERRQLQQLRATILEFRRIVADLEK------QIAIEERQVGIYD 54
             L + R      R ++ R  +Q+   +     R  + L++      QI  +   +  +D
Sbjct: 451 ANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRTGSILQEGCEKLSQIYRDLAHLKTFD 510

Query: 55  KDHFAYPILAKS--ARQRIDNLLLSIRDLLLRQESLESH 91
           +       L ++   +  +   L +I     R+ES  +H
Sbjct: 511 RGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAH 549


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.134    0.345 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 789,081
Number of extensions: 34013
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 54
Length of query: 103
Length of database: 5,693,230
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,044,638
Effective search space: 141562330
Effective search space used: 141562330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)