RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780894|ref|YP_003065307.1| hypothetical protein
CLIBASIA_03955 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus
          subtilis [TaxId: 1423]}
          Length = 137

 Score = 25.6 bits (55), Expect = 1.2
 Identities = 6/42 (14%), Positives = 15/42 (35%)

Query: 20 RQLQQLRATILEFRRIVADLEKQIAIEERQVGIYDKDHFAYP 61
          ++    +A  +   R    L++ I   E  + +     F+  
Sbjct: 1  KRFSSFQAAQIRIARPTGQLDEIIRFYEEGLCLKRIGEFSQH 42


>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA,
           soluble domain {Thermotoga maritima [TaxId: 2336]}
          Length = 232

 Score = 23.2 bits (49), Expect = 6.2
 Identities = 5/29 (17%), Positives = 16/29 (55%)

Query: 16  NDERRQLQQLRATILEFRRIVADLEKQIA 44
            +  ++  QL+  ++E R+ +  L + ++
Sbjct: 193 KETVQRTHQLKRNLVELRKTIWPLREVLS 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.345 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 338,884
Number of extensions: 14556
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 23
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)