BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780894|ref|YP_003065307.1| hypothetical protein
CLIBASIA_03955 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780894|ref|YP_003065307.1| hypothetical protein CLIBASIA_03955 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score =  200 bits (508), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MRLQEQRTRLKEFRLNDERRQLQQLRATILEFRRIVADLEKQIAIEERQVGIYDKDHFAY 60
           MRLQEQRTRLKEFRLNDERRQLQQLRATILEFRRIVADLEKQIAIEERQVGIYDKDHFAY
Sbjct: 1   MRLQEQRTRLKEFRLNDERRQLQQLRATILEFRRIVADLEKQIAIEERQVGIYDKDHFAY 60

Query: 61  PILAKSARQRIDNLLLSIRDLLLRQESLESHLESESNSDKSVS 103
           PILAKSARQRIDNLLLSIRDLLLRQESLESHLESESNSDKSVS
Sbjct: 61  PILAKSARQRIDNLLLSIRDLLLRQESLESHLESESNSDKSVS 103


>gi|254780403|ref|YP_003064816.1| hypothetical protein CLIBASIA_01440 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 80

 Score = 22.7 bits (47), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 50 VGIYDKDHFAYPILAKSARQRIDNLLL 76
          VGI+     AY +  + ++Q +DN L+
Sbjct: 36 VGIFSSYSNAYDVWKEKSQQMVDNALM 62


>gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 162

 Score = 21.6 bits (44), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 65 KSARQRIDNLLLSIRDLLLRQESLESH 91
          K  ++RIDN+L S    L   +S + H
Sbjct: 5  KYTKERIDNILASFSGGLSLSQSCKKH 31


>gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 432

 Score = 21.6 bits (44), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 21  QLQQLRATILEFRRIVADLEKQ-------IAIEERQVGIYDKDHFAYPILAKS 66
           +L   R  IL F  ++  L ++       I  E  Q  + D DH  YP +  S
Sbjct: 191 ELMYAREKILPFMDVIWSLLERESRKGAHILFEGAQGFLLDNDHGTYPFVTSS 243


>gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 297

 Score = 21.2 bits (43), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 50  VGIYDKDHFAYPILAKSARQRIDN 73
           V  Y     A P LAK A+ RID+
Sbjct: 253 VAGYGVAFHAKPALAKQAKIRIDH 276


>gi|254780955|ref|YP_003065368.1| hypothetical protein CLIBASIA_04270 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 204

 Score = 20.0 bits (40), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 54 DKDHFAYPILAKSARQRIDNLLLS 77
          + DH  Y ILAK A + +  ++LS
Sbjct: 26 NYDHIRYDILAKEALRGLVKVVLS 49


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.134    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,078
Number of Sequences: 1233
Number of extensions: 1665
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 103
length of database: 328,796
effective HSP length: 62
effective length of query: 41
effective length of database: 252,350
effective search space: 10346350
effective search space used: 10346350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 32 (16.9 bits)