Query gi|254780895|ref|YP_003065308.1| hypothetical protein CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs 84 out of 86
Neff 2.7
Searched_HMMs 13730
Date Wed Jun 1 10:23:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780895.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oa4a1 a.4.12.3 (A:1-93) Unch 100.0 1E-41 1.4E-45 260.6 5.7 89 3-91 4-92 (93)
2 d1k78a1 a.4.1.5 (A:19-81) Pax- 50.2 9.4 0.00069 17.9 5.2 39 39-78 21-59 (63)
3 d2jn6a1 a.4.1.19 (A:1-89) Unch 47.8 10 0.00075 17.7 4.8 47 31-77 4-51 (89)
4 d2p12a1 b.175.1.1 (A:8-172) Hy 41.0 12 0.00084 17.4 3.3 42 35-80 110-151 (165)
5 d2j0na1 a.250.1.1 (A:144-314) 24.2 19 0.0014 16.2 2.0 32 60-91 127-160 (171)
6 d2bzea1 b.34.21.1 (A:345-476) 19.5 32 0.0023 14.9 2.7 23 57-79 91-113 (132)
7 d2al3a1 d.15.1.2 (A:10-85) Tet 19.1 12 0.00089 17.3 0.2 15 52-66 27-41 (76)
8 d2coba1 a.4.1.15 (A:8-70) Liga 16.4 38 0.0028 14.4 4.0 29 39-67 13-41 (63)
9 d1ttya_ a.4.13.2 (A:) Sigma70 16.3 38 0.0028 14.4 5.1 42 37-83 22-68 (87)
10 d1jw2a_ a.23.5.1 (A:) Hemolysi 15.3 41 0.003 14.3 2.3 25 57-82 31-55 (72)
No 1
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=100.00 E-value=1e-41 Score=260.64 Aligned_cols=89 Identities=47% Similarity=0.718 Sum_probs=85.4
Q ss_pred CCCCCCCCEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHH
Q ss_conf 42032322677799983353217599885036779999999986088699999977067999999999999983998688
Q gi|254780895|r 3 EKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAGLR 82 (91)
Q Consensus 3 e~~~~~~~~V~gPdGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~gLr 82 (91)
-..-..|+.|+|||||+||++||||++|+||||||||+||++|.+||||++|||++|+||+|||.+|++++++||++|||
T Consensus 4 ~~~~~gpr~vt~pdgs~~t~~dLp~~~trRWva~RKaaVV~av~~Gl~S~~EAcrrY~LS~eEf~~W~~a~~~hGe~aLr 83 (93)
T d2oa4a1 4 LRKVEGPRSVTLPDGSIMTRADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDALK 83 (93)
T ss_dssp SSCCSSSCEEECSSSCEEETTSSCCSCCSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSSSC
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 24589985145799984411119996664113999999999998385779999988399999999999999998699999
Q ss_pred HHHHHHHCC
Q ss_conf 757776339
Q gi|254780895|r 83 TTQIQKYRE 91 (91)
Q Consensus 83 ~T~lQ~YRq 91 (91)
+|+||+|||
T Consensus 84 ~t~~q~yr~ 92 (93)
T d2oa4a1 84 VTALKKYRQ 92 (93)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHC
T ss_conf 998999863
No 2
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.24 E-value=9.4 Score=17.94 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=33.6
Q ss_pred HHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCH
Q ss_conf 9999998608869999997706799999999999998399
Q gi|254780895|r 39 AEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGL 78 (91)
Q Consensus 39 A~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~ 78 (91)
.-||+++..| +|.-+|.+++..|.---.-|..-..+.|.
T Consensus 21 ~Riv~~~~~G-~s~r~aA~rf~VS~s~v~k~l~r~reTG~ 59 (63)
T d1k78a1 21 QRIVELAHQG-VRPCDISRQLRVSHGCVSKILGRYYETGS 59 (63)
T ss_dssp HHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999959-98999999959779999999999997268
No 3
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=47.77 E-value=10 Score=17.72 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHC-CCCCHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 50367799999999860-886999999770679999999999999839
Q gi|254780895|r 31 RRWVARRKAEVVAAVKG-GLLSLEEACQIYTLTVEEFLSWQASIVQHG 77 (91)
Q Consensus 31 ~RWVasRKA~VV~aV~~-GLis~~EA~~rY~LS~EEf~~W~~av~~hG 77 (91)
+++-.-=|..+|+-|.- +=.|..++++.|++|..-+..|.+.+...|
T Consensus 4 k~Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~~~~~~ 51 (89)
T d2jn6a1 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (89)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 989999999999999982998599999997989889999999984424
No 4
>d2p12a1 b.175.1.1 (A:8-172) Hypothetical protein RHA1_ro00977 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=41.02 E-value=12 Score=17.42 Aligned_cols=42 Identities=24% Similarity=0.120 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf 7799999999860886999999770679999999999999839986
Q gi|254780895|r 35 ARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG 80 (91)
Q Consensus 35 asRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g 80 (91)
.--.-|.-.|+..|+||.++|-.-+.- ...=...+.+||-.-
T Consensus 110 ilD~DEL~~A~~~GlIs~e~ae~Al~t----a~~~ve~i~r~g~d~ 151 (165)
T d2p12a1 110 LLDVDELMEAHTTGLLDTATAEQAILT----ATTAIDGIAAHGHDL 151 (165)
T ss_dssp EECHHHHHHHHHTTSSCHHHHHHHHHH----HHHHHHHHHHTTTCH
T ss_pred EECHHHHHHHHHCCCCCHHHHHHHHHH----HHHHHHHHHHCCCCH
T ss_conf 954999999998699899999999999----999999999848998
No 5
>d2j0na1 a.250.1.1 (A:144-314) Invasin IpaD {Shigella flexneri [TaxId: 623]}
Probab=24.20 E-value=19 Score=16.18 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHCHH--HHHHHHHHHHCC
Q ss_conf 67999999999999983998--688757776339
Q gi|254780895|r 60 TLTVEEFLSWQASIVQHGLA--GLRTTQIQKYRE 91 (91)
Q Consensus 60 ~LS~EEf~~W~~av~~hG~~--gLr~T~lQ~YRq 91 (91)
.|+..+|-+|+.+++..+.. .=--|-+|+|||
T Consensus 127 ~l~~a~yqaw~a~f~a~~~~i~s~~q~l~ekys~ 160 (171)
T d2j0na1 127 VLDNAKYQAWNAGFSAEDETMKNNLQTLVQKYSN 160 (171)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3149999999999888998898689999999863
No 6
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.52 E-value=32 Score=14.86 Aligned_cols=23 Identities=22% Similarity=0.579 Sum_probs=17.7
Q ss_pred HHCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 77067999999999999983998
Q gi|254780895|r 57 QIYTLTVEEFLSWQASIVQHGLA 79 (91)
Q Consensus 57 ~rY~LS~EEf~~W~~av~~hG~~ 79 (91)
.-=..+++||..|..++.+.|..
T Consensus 91 Sn~~fte~E~~~w~~~~~~~~~~ 113 (132)
T d2bzea1 91 SNQEFTESEFMKWKEAMFSAGMQ 113 (132)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTCC
T ss_pred ECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 38989999999999999976999
No 7
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.06 E-value=12 Score=17.29 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=12.4
Q ss_pred HHHHHHHCCCCHHHH
Q ss_conf 999997706799999
Q gi|254780895|r 52 LEEACQIYTLTVEEF 66 (91)
Q Consensus 52 ~~EA~~rY~LS~EEf 66 (91)
++|||+.+++..+++
T Consensus 27 L~eaC~k~~~~~~~~ 41 (76)
T d2al3a1 27 LEDTCRRQDFNPSEY 41 (76)
T ss_dssp HHHHHHHTTCCGGGC
T ss_pred HHHHHHHHCCCHHHC
T ss_conf 999999819986676
No 8
>d2coba1 a.4.1.15 (A:8-70) Ligand-dependent corepressor (LCoR) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.41 E-value=38 Score=14.43 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHCCCCHHHHH
Q ss_conf 99999986088699999977067999999
Q gi|254780895|r 39 AEVVAAVKGGLLSLEEACQIYTLTVEEFL 67 (91)
Q Consensus 39 A~VV~aV~~GLis~~EA~~rY~LS~EEf~ 67 (91)
-+-|++|.-|.+|..-|..-|++-..-+.
T Consensus 13 ~eAv~~V~~G~MSV~rA~~~ygvPHSTLE 41 (63)
T d2coba1 13 EEAISVVMSGKMSVSKAQSIYGIPHSTLE 41 (63)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHCCEEEHHCCCCCCCCCHHHH
T ss_conf 99999998354122303753057750112
No 9
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=16.32 E-value=38 Score=14.41 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCC-----CCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 9999999986088-----6999999770679999999999999839986887
Q gi|254780895|r 37 RKAEVVAAVKGGL-----LSLEEACQIYTLTVEEFLSWQASIVQHGLAGLRT 83 (91)
Q Consensus 37 RKA~VV~aV~~GL-----is~~EA~~rY~LS~EEf~~W~~av~~hG~~gLr~ 83 (91)
|-..|+. -+||| .|++|..+.+++|.| +++-+..-++.-||.
T Consensus 22 rE~~Ii~-~rfGl~~~~~~tl~eI~~~lgiSrE----RVRQie~~al~kLr~ 68 (87)
T d1ttya_ 22 REAMVLR-MRYGLLDGKPKTLEEVGQYFNVTRE----RIRQIEVKALRKLRH 68 (87)
T ss_dssp HHHHHHH-HHHTTTTSSCCCHHHHHHHHTCCHH----HHHHHHHHHHHHHBT
T ss_pred HHHHHHH-HHCCCCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHC
T ss_conf 9999999-9727789996889999999598899----999999999999867
No 10
>d1jw2a_ a.23.5.1 (A:) Hemolysin expression modulating protein HHA {Escherichia coli [TaxId: 562]}
Probab=15.34 E-value=41 Score=14.27 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=19.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHCHHHHH
Q ss_conf 77067999999999999983998688
Q gi|254780895|r 57 QIYTLTVEEFLSWQASIVQHGLAGLR 82 (91)
Q Consensus 57 ~rY~LS~EEf~~W~~av~~hG~~gLr 82 (91)
.+|.|+.+|+....+|.| |-.+-|.
T Consensus 31 ~~~~L~~~E~~~f~~AaD-HR~AELt 55 (72)
T d1jw2a_ 31 NKYELSDNELAVFYSAAD-HRLAELT 55 (72)
T ss_dssp HHHHSCHHHHHHHHHHHH-HHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHH-HHHHHHH
T ss_conf 535388899999999999-9899998
Done!