RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780895|ref|YP_003065308.1| hypothetical protein
CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62]
(91 letters)
>gnl|CDD|148310 pfam06627, DUF1153, Protein of unknown function (DUF1153). This
family consists of several short, hypothetical
bacterial proteins of unknown function.
Length = 90
Score = 155 bits (393), Expect = 3e-39
Identities = 54/90 (60%), Positives = 68/90 (75%)
Query: 1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYT 60
M K + V PDGSPLT A+LPPP+TRRWVA RKA VVAAV+GGLLS +EAC+ Y
Sbjct: 1 MYLKKVEGPRSVTLPDGSPLTRADLPPPDTRRWVASRKAAVVAAVRGGLLSRDEACERYG 60
Query: 61 LTVEEFLSWQASIVQHGLAGLRTTQIQKYR 90
L+ EEF +WQ ++ +HG AGLR T++Q+YR
Sbjct: 61 LSEEEFAAWQRAVDRHGEAGLRATRLQQYR 90
>gnl|CDD|181604 PRK08990, PRK08990, flagellar motor protein PomA; Reviewed.
Length = 254
Score = 26.9 bits (60), Expect = 1.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 43 AAVKGGLLSLEEA 55
AA KGG L+LEEA
Sbjct: 86 AARKGGFLALEEA 98
>gnl|CDD|129060 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
(PKS) enzymes.
Length = 298
Score = 26.6 bits (60), Expect = 1.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 40 EVVAAVKGGLLSLEEACQI 58
E+ AA G+LSLE+A ++
Sbjct: 93 EIAAAYVAGVLSLEDAARL 111
>gnl|CDD|178698 PLN03153, PLN03153, hypothetical protein; Provisional.
Length = 537
Score = 26.4 bits (58), Expect = 1.8
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 15 PDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLS 51
P SPL+ L +RRW R V AV LLS
Sbjct: 7 PCSSPLS---LSRTRSRRWRHSRTGTAVVAVAALLLS 40
>gnl|CDD|165102 PHA02735, PHA02735, putative DNA polymerase type B; Provisional.
Length = 716
Score = 26.2 bits (57), Expect = 1.8
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 12 VIGPD---GSPLTIANLPPPNTRRW 33
V PD P +A+LP P T W
Sbjct: 288 VAAPDINSAYPAILADLPDPKTLNW 312
>gnl|CDD|178901 PRK00148, PRK00148, Maf-like protein; Reviewed.
Length = 194
Score = 25.2 bits (56), Expect = 4.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 21 TIANLPPPNTRRWVARRKAEVVAAV 45
IA P + +AR KAE VA
Sbjct: 34 AIAASSPSELVQALARAKAEAVAEN 58
>gnl|CDD|149472 pfam08418, Pol_alpha_B_N, DNA polymerase alpha subunit B
N-terminal. This is the eukaryotic DNA polymerase
alpha subunit B N-terminal domain which is involved in
complex formation. Also see pfam04058.
Length = 240
Score = 25.1 bits (55), Expect = 4.6
Identities = 7/21 (33%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 52 LEEACQIYTLTVEE-FLSWQA 71
LE C+++ L+ E+ F+ W++
Sbjct: 14 LESLCKLHRLSEEDLFIKWES 34
>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional.
Length = 388
Score = 24.4 bits (54), Expect = 6.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 40 EVVAAVKGGLLSLEEACQIYTLTVEEFL 67
EV VK L LE+A + T V FL
Sbjct: 313 EVRELVKDEGLPLEDALKPLTSNVARFL 340
>gnl|CDD|172557 PRK14067, PRK14067, exodeoxyribonuclease VII small subunit;
Provisional.
Length = 80
Score = 24.4 bits (53), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 37 RKAEVVAAVKGGLLSLEEACQIY 59
R E+V A++GG L LEE+ +Y
Sbjct: 15 RLQEIVDALEGGDLPLEESVALY 37
>gnl|CDD|132239 TIGR03195, 4hydrxCoA_B, 4-hydroxybenzoyl-CoA reductase, beta
subunit. This model represents the second largest
chain, beta, of the enzyme 4-hydroxybenzoyl-CoA
reductase. In species capable of degrading various
aromatic compounds by way of benzoyl-CoA, this enzyme
can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Length = 321
Score = 24.4 bits (53), Expect = 6.8
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 12 VIGPDG-SPLTIANLPPPNTRRWVARRKAEVVAAVK 46
++GP G + +A L + + EV+AAV+
Sbjct: 174 IVGPAGVRRVPLAELYVEDGAAHLTLEPGEVLAAVR 209
>gnl|CDD|180870 PRK07190, PRK07190, hypothetical protein; Provisional.
Length = 487
Score = 24.4 bits (53), Expect = 7.1
Identities = 11/16 (68%), Positives = 13/16 (81%), Gaps = 2/16 (12%)
Query: 3 EKIQSHMKYVIGPDGS 18
E+IQS +YVIG DGS
Sbjct: 150 ERIQS--RYVIGADGS 163
>gnl|CDD|130937 TIGR01882, peptidase-T, peptidase T. This model represents a
tripeptide aminopeptidase known as Peptidase T, which
has a substrate preference for hydrophobic peptides.
Length = 410
Score = 24.1 bits (52), Expect = 7.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 14 GPDGSPLTIANLPPPN 29
G DGS L+ LP PN
Sbjct: 357 GTDGSQLSYMGLPTPN 372
>gnl|CDD|163284 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter
like protein HpnN. The genomes containing members of
this family share the machinery for the biosynthesis of
hopanoid lipids. Furthermore, the genes of this family
are usually located proximal to other components of this
biological process. The proteins appear to be related to
the RND family of export proteins, particularly the
hydrophobe/amphiphile efflux-3 (HAE3) family represented
by TIGR00921.
Length = 862
Score = 24.2 bits (53), Expect = 7.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 18 SPLTIANLPPPNTRRWVA 35
P+T+ +LPP RRWVA
Sbjct: 644 EPVTLEDLPPDLRRRWVA 661
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,515,119
Number of extensions: 81311
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 28
Length of query: 91
Length of database: 5,994,473
Length adjustment: 59
Effective length of query: 32
Effective length of database: 4,719,601
Effective search space: 151027232
Effective search space used: 151027232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.0 bits)