RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780895|ref|YP_003065308.1| hypothetical protein CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62] (91 letters) >2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3 Length = 101 Score = 129 bits (326), Expect = 2e-31 Identities = 42/82 (51%), Positives = 56/82 (68%) Query: 10 KYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSW 69 + V PDGS +T A+LPP NTRRWVA RK VV V GL++L EA Q Y L+ EEF SW Sbjct: 11 RSVTLPDGSIMTRADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSW 70 Query: 70 QASIVQHGLAGLRTTQIQKYRE 91 +++ +HG L+ T ++KYR+ Sbjct: 71 VSALAEHGKDALKVTALKKYRQ 92 >2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} Length = 95 Score = 128 bits (323), Expect = 4e-31 Identities = 41/82 (50%), Positives = 56/82 (68%) Query: 10 KYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSW 69 + V PDG+ L+ A+LPP +TRRWVA RKA VV AV GL++ EA Y+L+ EEF W Sbjct: 10 RQVTLPDGTVLSRADLPPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALW 69 Query: 70 QASIVQHGLAGLRTTQIQKYRE 91 ++++ HG L+ T IQKYR+ Sbjct: 70 RSAVAAHGEKALKVTMIQKYRQ 91 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 32.3 bits (72), Expect = 0.030 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 5/26 (19%) Query: 3 EKIQSHMK-YVIGPDGSP-LTI-ANL 25 +K+Q+ +K Y D +P L I A + Sbjct: 23 KKLQASLKLY--ADDSAPALAIKATM 46 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 30.3 bits (68), Expect = 0.099 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 14/82 (17%) Query: 17 GSPLTIANLPPPNTRRWVARRKAEVVAAVKGG-------LLSLEEACQIYTLTVEEFLSW 69 P R V A++VA + GG L + Q Y + V + + + Sbjct: 134 KRPFD--KKSNSALFRAVGEGNAQLVA-IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190 Query: 70 QASIVQHGLAGLRTTQ-IQKYR 90 A + L RTT +K Sbjct: 191 SAETLSE-LI--RTTLDAEKVF 209 Score = 27.2 bits (60), Expect = 0.95 Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 42/83 (50%) Query: 41 VVAAVKGGLL-------SLEEACQIYTLTVEEFLSW------QA--------SIVQ---- 75 V A + S + L + +A SI++ Sbjct: 278 VTAVA----IAETDSWESFFVS----VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329 Query: 76 HG---------LAGLRTTQIQKY 89 + ++ L Q+Q Y Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDY 352 >2gtt_A Nucleoprotein; protein-RNA complex, viral protein, RNA binding protein; 3.49A {Rabies virus} SCOP: a.260.1.1 Length = 450 Score = 27.2 bits (60), Expect = 0.98 Identities = 6/23 (26%), Positives = 10/23 (43%) Query: 47 GGLLSLEEACQIYTLTVEEFLSW 69 GL+S + LT E + + Sbjct: 237 SGLVSFTGFIKQINLTAREAILY 259 >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Length = 2060 Score = 26.7 bits (59), Expect = 1.4 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 7/54 (12%) Query: 21 TIANLPPPNTRRWVARRKAEVVAAVKG-------GLLSLEEACQIYTLTVEEFL 67 I +L + +R+ ++ + G S E + +T E + Sbjct: 864 KIFSLDRSKRVAELKKRRDYIIKKLNDDFQKVWFGRNSAGEPVDLEDMTYAEVV 917 >3hhw_K Nucleoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 2qvj_A* 3hhz_K 2gic_A Length = 421 Score = 26.3 bits (58), Expect = 1.5 Identities = 5/22 (22%), Positives = 11/22 (50%) Query: 48 GLLSLEEACQIYTLTVEEFLSW 69 L + C+I ++ E+ +W Sbjct: 226 ALATFGHLCKITGMSTEDVTTW 247 >2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: P1L; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142 Score = 26.0 bits (57), Expect = 2.1 Identities = 4/25 (16%), Positives = 8/25 (32%) Query: 12 VIGPDGSPLTIANLPPPNTRRWVAR 36 ++G +P+ PP Sbjct: 11 IVGHHDNPVFEMEFLPPGKAESKDD 35 >2wpx_A ORF14; transferase, acetyl transferase, antibiotic biosynthesis; HET: ACO; 2.31A {Streptomyces clavuligerus} PDB: 2wpw_A* Length = 339 Score = 25.8 bits (55), Expect = 2.3 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 8/58 (13%) Query: 14 GPDGSPLTIANL--------PPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTV 63 GP +P ++ P WV R VV A++ L ++ L V Sbjct: 35 GPRAAPPCNVDMVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLV 92 >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus HB8} Length = 286 Score = 25.2 bits (53), Expect = 4.0 Identities = 7/44 (15%), Positives = 16/44 (36%) Query: 25 LPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLS 68 P +R +A + + G +A + + +E L+ Sbjct: 231 TSYPYAEEVASRLRAPIRVLPEAGHYLWIDAPEAFEEAFKEALA 274 >2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405} Length = 76 Score = 24.7 bits (54), Expect = 4.8 Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 28 PNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFL 67 T + S+E+AC ++ + ++ + Sbjct: 17 RGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLV 56 >3kuj_A Polyadenylate-binding protein 1; protein-protein complex, acetylation, alternative splicing, cytoplasm, methylation, mRNA processing, mRNA splicing; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 2rqg_B 2rqh_B 3kur_A 2x04_A Length = 88 Score = 24.8 bits (54), Expect = 5.5 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 14 GPDGSPLT---IANLPPPNTRRW--------VARRKAEVVAAVKGGLLSLEEACQIYTLT 62 GP GSPLT +A+ PP ++ + + + G LL ++ + ++ L Sbjct: 1 GPLGSPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLE 60 Query: 63 VEEFL 67 E L Sbjct: 61 SPESL 65 >3kus_A Polyadenylate-binding protein 1; protein-protein complex, acetylation, alternative splicing, cytoplasm, methylation, mRNA processing, mRNA splicing, nucleus; HET: EPE; 1.40A {Homo sapiens} PDB: 3kut_A 3kur_A 2x04_A Length = 88 Score = 24.7 bits (54), Expect = 5.8 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 14 GPDGSPLT---IANLPPPNTRRW--------VARRKAEVVAAVKGGLLSLEEACQIYTLT 62 GP GSPLT +A+ PP ++ + + + G LL ++ + ++ L Sbjct: 1 GPLGSPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLE 60 Query: 63 VEEFL 67 E L Sbjct: 61 SPESL 65 >3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Length = 316 Score = 23.8 bits (51), Expect = 9.8 Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 40 EVVAAVKGGLLSLEEACQI 58 E + V +LS E+A +I Sbjct: 100 EYSSLVAADVLSFEDAVKI 118 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.132 0.389 Gapped Lambda K H 0.267 0.0669 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 797,776 Number of extensions: 31596 Number of successful extensions: 127 Number of sequences better than 10.0: 1 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 21 Length of query: 91 Length of database: 5,693,230 Length adjustment: 58 Effective length of query: 33 Effective length of database: 4,287,078 Effective search space: 141473574 Effective search space used: 141473574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.2 bits)