HHsearch alignment for GI: 254780896 and conserved domain: PRK11618
>PRK11618 inner membrane ABC transporter permease protein YjfF; Provisional.
Probab=100.00 E-value=2.3e-37 Score=244.76 Aligned_cols=305 Identities=16% Similarity=0.109 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHHHHHH-H-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 669999999999999999-9-75301472379999999999999999999999984322489999999999999997204
Q gi|254780896|r 10 KYDKILCLLAVVYPLLLF-L-FLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSR 87 (351)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~ 87 (351)
T Consensus 4 r~~p~~i~i~vlivl~i~~~~~~p~Fls~~Nl~~il~~~a~l~I~AlG~t~vi-i~GgIDLSvGs~~~l~~~v~a~l~~~ 82 (317)
T PRK11618 4 RNLPLLITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAVLIGR 82 (317)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 41459999999999999999918988888999999999999999999999999-95786052999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56530365335788988987654444543213457777999889899999855540587678857765211212347643
Q gi|254780896|r 88 YGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLI 167 (351)
Q Consensus 88 ~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~ 167 (351)
T Consensus 83 ~g~~~~lai~~~l~~g~~~G~iNG~lv~~~~ipsf-IvTLg~~~i~~Gl~~~~---~~~~~~~~~---~~~~~~------ 149 (317)
T PRK11618 83 YGWHPLLAFPLVLVMGALFGALMGALIHYLKLPAF-IVTLAGMFLARGVSFLV---SEESIPINH---PIYDTL------ 149 (317)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHH---CCCCCCCCC---CHHHHH------
T ss_conf 69858999999999999999999999999727829-99999999999999986---188724577---247777------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43433331001489999999999999999999961305999999964212223342023223679999987999999999
Q gi|254780896|r 168 RFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGA 247 (351)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~ 247 (351)
T Consensus 150 ~~~~~~~~~~---~~ip~~~~i~l~~~~~~~~~l~~T~~GR~lyAvG~N~~AA~~sGI~v~r~~i~~fvisG~~aglAGi 226 (317)
T PRK11618 150 SSLAWKLPGG---GRLTAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGVPVRRTTIRIYALSGFLAALAGI 226 (317)
T ss_pred HHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHCHHHCEEEEECCCHHHHHHCCCCCHHEEEHHHHHHHHHHHHHHH
T ss_conf 7777662468---7414999999999999999997482006688867989999994998234220799999999999999
Q ss_pred HHHHHHHEECCCCCCHHHHHHHHHHHHH------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 9986644011354315899998898873------4742238999999999999999987312210000123444202589
Q gi|254780896|r 248 FFAASRDRISPDMFKFSENIIVISIVIL------GGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHT 321 (351)
Q Consensus 248 l~a~~~~~v~p~~~~~~~~~~~~~~vvl------GG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (351)
T Consensus 227 l~~~~~~s~~~~~-G~~~~l~aIaAvviGGtsl~GG~Gsv~Gt~lGal~l~~i~ngl~l~g-----------~v~~~~q~ 294 (317)
T PRK11618 227 VFSLYTSAGYALA-AVGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDG-----------TLSSWWTK 294 (317)
T ss_pred HHHHHHCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----------CCCHHHHH
T ss_conf 9999845818676-76658999999998576778995146999999999999999998637-----------89879999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999985899656674
Q gi|254780896|r 322 TLMVIALFLVILMRSHSLLRLRT 344 (351)
Q Consensus 322 ~l~~~~lilvll~rP~Gl~g~r~ 344 (351)
T Consensus 295 ~~~G~ill~-aV~l~r~l~~~~~ 316 (317)
T PRK11618 295 IVIGILLFV-FIALQRGLTVLWE 316 (317)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHC
T ss_conf 999999899-9997414888614