>cd06579 TM_PBP1_transp_AraH_like Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to ge

Probab=100.00 E-value=3.5e-44 Score=286.24 Aligned_cols=254 Identities=19% Similarity=0.159 Sum_probs=199.5 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999984322489999999999999997204565303653357889889876544445432134577779 Q gi|254780896|r 47 LIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIAT 126 (351) Q Consensus 47 ~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~T 126 (351) T Consensus 2 aiyal~AlGl~lv~-~~g~inla~ga~~~lGay~~~~l~~~~g~~~~~~~~~a~~~~~~~g~i~g~l~~r~~~~~~-i~T 79 (263) T cd06579 2 AVLGILALGMTLVI-ITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPF-IVT 79 (263) T ss_pred HHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHH T ss_conf 79999999999999-9869738999999999999999999769867999999999999998676278886514689-999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 99889899999855540587678857765211212347643434333310014899999999999999999999613059 Q gi|254780896|r 127 LIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAI 206 (351) Q Consensus 127 l~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~ 206 (351) T Consensus 80 l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~-------~----~~~~~~~~~~~~~~~~~~l~rT~~ 141 (263) T cd06579 80 LGTMFILRGLALLIT----GGRPISGLPPLFSFFLGGG---LIL-------G----IPVPVLIALAVALVAWFLLRRTRF 141 (263) T ss_pred HHHHHHHHHHHHHHC----CCCCCCCCCHHHHHHHHHC---CCC-------C----CHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999999860----8988777884888775314---556-------5----049999999999998988816756 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHC------CCCC Q ss_conf 9999996421222334202322367999998799999999999866440113543158999988988734------7422 Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILG------GMTS 280 (351) Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlG------G~gs 280 (351) T Consensus 142 G~~lrAv~~n~~~A~~~Gi~v~r~~~~af~is~~laglAG~l~a~~~~~v~p~~-g~~~~~~~~~~vviGG~~~~GG~Gs 220 (263) T cd06579 142 GRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTA-GNGYELDAIAAVVLGGTSLTGGRGS 220 (263) T ss_pred CCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCHHEEEEEEEHHHCCCCCC T ss_conf 110443131899999839986896548998989999999999998836668552-5775321530242320031398367 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 38999999999999999987312210000123444202589999999999999 Q gi|254780896|r 281 LSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVIL 333 (351) Q Consensus 281 ~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll 333 (351) T Consensus 221 ~~G~viGa~~l~~l~~~l~~~~------------~~~~~~~~v~g~ili~~v~ 261 (263) T cd06579 221 VLGTLLGALLLGVLNNGLNLLG------------VSSFWQQIVKGAILLLAVA 261 (263) T ss_pred HHHHHHHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHEEEEE T ss_conf 2999999999999999999829------------9989999999988124577

HHsearch alignment for GI: 254780896 and conserved domain: cd06579