Query gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 351 No_of_seqs 156 out of 4108 Neff 8.1 Searched_HMMs 39220 Date Mon May 30 00:39:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780896.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK11301 livM leucine/isoleuci 100.0 0 0 450.3 33.9 312 25-351 96-416 (416) 2 COG4177 LivM ABC-type branched 100.0 0 0 376.7 33.0 285 37-347 26-312 (314) 3 TIGR03408 urea_trans_UrtC urea 100.0 0 0 353.1 30.5 283 33-342 2-313 (313) 4 cd06581 TM_PBP1_LivM_like Tran 100.0 0 0 336.1 25.0 268 46-341 1-268 (268) 5 TIGR03622 urea_t_UrtB_arc urea 100.0 0 0 328.6 29.5 278 37-346 2-282 (283) 6 TIGR03409 urea_trans_UrtB urea 100.0 0 0 322.7 30.0 279 38-344 3-290 (291) 7 PRK10740 branched-chain amino 100.0 0 0 317.9 31.1 287 39-346 12-306 (308) 8 cd06582 TM_PBP1_LivH_like Tran 100.0 0 0 304.7 28.2 268 43-340 2-272 (272) 9 COG0559 LivH Branched-chain am 100.0 1.4E-45 0 296.2 29.5 279 39-346 10-296 (297) 10 pfam02653 BPD_transp_2 Branche 100.0 5.1E-43 0 279.1 26.3 263 39-330 2-265 (267) 11 cd06574 TM_PBP1_branched-chain 100.0 2.4E-43 0 281.1 23.7 239 46-301 1-247 (266) 12 cd06579 TM_PBP1_transp_AraH_li 100.0 3.5E-44 0 286.2 18.8 254 47-333 2-261 (263) 13 PRK11618 inner membrane ABC tr 100.0 2.3E-37 5.9E-42 244.8 25.0 305 10-344 4-316 (317) 14 PRK11285 araH L-arabinose tran 100.0 3.4E-36 8.6E-41 237.7 24.5 271 28-333 45-321 (327) 15 COG1172 AraH Ribose/xylose/ara 100.0 3.4E-36 8.6E-41 237.7 24.4 268 31-333 30-304 (316) 16 PRK09512 rbsC ribose ABC trans 100.0 2.1E-36 5.4E-41 238.9 22.7 278 24-332 31-314 (321) 17 PRK09478 mglC beta-methylgalac 100.0 2.1E-35 5.4E-40 232.8 27.3 278 29-333 32-326 (336) 18 PRK09699 D-allose transporter 100.0 1E-35 2.5E-40 234.8 24.7 294 4-332 16-317 (325) 19 COG4214 XylH ABC-type xylose t 100.0 1.1E-29 2.7E-34 198.1 18.1 307 5-332 17-384 (394) 20 cd06580 TM_PBP1_transp_TpRbsC_ 100.0 1.9E-28 4.8E-33 190.6 22.5 205 48-302 3-212 (234) 21 COG1079 Uncharacterized ABC-ty 100.0 5.3E-26 1.4E-30 175.7 21.4 276 41-336 13-288 (304) 22 COG4603 ABC-type uncharacteriz 99.9 1.5E-22 3.7E-27 154.8 19.6 260 34-304 53-317 (356) 23 COG4158 Predicted ABC-type sug 99.9 1.3E-24 3.4E-29 167.2 2.8 248 28-298 41-294 (329) 24 COG4120 ABC-type uncharacteriz 99.9 1.7E-20 4.4E-25 142.2 18.4 222 39-277 6-227 (293) 25 COG4211 MglC ABC-type glucose/ 99.7 5.9E-18 1.5E-22 126.8 -0.6 251 26-291 29-296 (336) 26 cd06550 TM_ABC_iron-siderophor 97.3 0.011 2.7E-07 34.0 13.4 40 206-245 148-187 (261) 27 PRK10440 iron-enterobactin tra 96.9 0.027 6.8E-07 31.6 27.4 112 206-336 210-326 (330) 28 PRK09535 btuC corrinoid ABC tr 96.4 0.055 1.4E-06 29.7 20.5 109 206-335 246-360 (366) 29 PRK10577 iron-hydroxamate tran 95.6 0.13 3.4E-06 27.4 26.9 115 206-336 213-331 (666) 30 pfam01032 FecCD FecCD transpor 95.5 0.15 3.7E-06 27.1 26.9 89 206-302 196-287 (312) 31 PRK09777 fecD iron-dicitrate t 95.3 0.17 4.4E-06 26.7 28.1 116 206-337 200-318 (318) 32 PRK11228 fecC iron-dicitrate t 95.0 0.21 5.4E-06 26.1 21.1 89 206-302 205-296 (323) 33 PRK03784 vtamin B12-transporte 94.9 0.22 5.7E-06 26.0 27.5 114 207-337 210-327 (330) 34 PRK10441 iron-enterobactin tra 94.8 0.24 6.1E-06 25.8 28.4 114 206-336 213-329 (335) 35 pfam00950 ABC-3 ABC 3 transpor 94.1 0.34 8.6E-06 24.9 18.7 37 206-242 144-180 (258) 36 COG1108 ZnuB ABC-type Mn2+/Zn2 94.0 0.35 9E-06 24.8 18.2 36 206-241 153-188 (274) 37 COG0609 FepD ABC-type Fe3+-sid 91.0 0.9 2.3E-05 22.3 26.6 114 207-336 213-329 (334) 38 PRK09543 znuB high-affinity zi 89.9 1.1 2.9E-05 21.7 21.1 36 207-242 145-180 (261) 39 COG4779 FepG ABC-type enteroba 72.9 5.4 0.00014 17.6 12.2 83 206-296 226-310 (346) 40 TIGR00512 aIF-2BI_fam translat 70.6 2 5E-05 20.2 1.1 25 76-100 221-245 (306) 41 pfam08566 Pam17 Mitochondrial 69.8 6.3 0.00016 17.2 5.4 24 88-111 73-96 (174) 42 TIGR01148 mtrC tetrahydrometha 67.4 7.1 0.00018 16.9 5.8 55 63-117 73-129 (276) 43 TIGR01113 mtrE tetrahydrometha 65.3 7.8 0.0002 16.6 5.0 44 68-111 56-99 (298) 44 TIGR00886 2A0108 nitrite trans 53.9 12 0.00031 15.4 8.0 17 236-252 101-117 (472) 45 pfam12263 DUF3611 Protein of u 49.9 14 0.00036 15.0 7.6 40 183-222 59-100 (183) 46 COG4059 MtrE Tetrahydromethano 46.6 16 0.00041 14.7 3.3 42 68-109 62-103 (304) 47 TIGR02069 cyanophycinase cyano 45.4 11 0.00028 15.7 1.4 30 188-217 190-219 (297) 48 pfam03137 OATP Organic Anion T 41.3 19 0.00049 14.2 3.6 16 68-83 71-87 (582) 49 COG4061 MtrC Tetrahydromethano 39.8 21 0.00052 14.1 4.2 45 81-125 88-132 (262) 50 pfam05957 DUF883 Bacterial pro 38.6 21 0.00054 14.0 2.3 23 89-111 70-92 (94) 51 COG4575 ElaB Uncharacterized c 37.2 23 0.00057 13.8 2.1 24 88-111 79-102 (104) 52 KOG3385 consensus 37.1 22 0.00057 13.8 1.9 27 214-240 32-58 (118) 53 PRK11677 cytochrome d ubiquino 34.6 25 0.00063 13.6 2.4 23 92-114 2-24 (134) 54 PRK10404 hypothetical protein; 33.3 26 0.00066 13.4 2.2 23 89-111 77-99 (101) 55 KOG2447 consensus 31.6 28 0.00071 13.3 5.0 72 170-261 188-259 (287) 56 PRK10132 hypothetical protein; 29.6 30 0.00077 13.1 2.1 21 90-110 84-104 (108) 57 COG2252 Xanthine/uracil/vitami 29.2 31 0.00078 13.0 9.7 27 66-92 75-101 (436) 58 TIGR00739 yajC preprotein tran 29.0 31 0.00078 13.0 1.9 15 323-337 10-24 (86) 59 PRK12277 50S ribosomal protein 26.4 25 0.00064 13.5 0.7 25 209-233 39-63 (84) 60 COG0182 Predicted translation 25.6 26 0.00066 13.5 0.6 11 214-224 130-140 (346) 61 TIGR01478 STEVOR variant surfa 23.6 39 0.00099 12.4 3.6 29 177-205 274-302 (315) 62 PTZ00270 variable surface prot 23.0 20 0.00051 14.1 -0.4 28 187-214 275-302 (333) 63 PRK10490 sensor protein KdpD; 22.1 41 0.0011 12.2 9.3 19 43-61 426-444 (895) 64 COG4605 CeuC ABC-type enteroch 21.7 42 0.0011 12.2 16.7 42 208-249 198-239 (316) 65 COG4854 Predicted membrane pro 21.5 43 0.0011 12.1 3.7 41 209-252 51-91 (126) 66 COG3763 Uncharacterized protei 20.4 45 0.0011 12.0 2.8 25 91-116 2-26 (71) No 1 >PRK11301 livM leucine/isoleucine/valine transporter permease subunit; Provisional Probab=100.00 E-value=0 Score=450.25 Aligned_cols=312 Identities=33% Similarity=0.558 Sum_probs=285.5 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 99997530147237999999999999999999999998432248999999999999999720456530365335788988 Q gi|254780896|r 25 LLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISG 104 (351) Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a 104 (351) +.+....+...++|..++.+..+||+++|+|+|+++|++|++|+||++||++|||+++++..++|+|+|+++|++.++++ T Consensus 96 ~~~~~~~p~~~~~~~~~ia~~~lIY~ilalGLNiv~G~aGllslGhaAFfgIGAYt~AlL~~~~G~~fwlalp~a~l~aa 175 (416) T PRK11301 96 LVLAVAWPFFVSRGAVDIATLTLIYVILGLGLNIVVGLAGLLDLGYVGFYAVGAYTYALLNHYYGLGFWECLPIAGLMAA 175 (416) T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999988752136899999999999999778999724330336999999999999999997249978999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCC Q ss_conf 987654444543213457777999889899999855540587678857765211212347643---------43433331 Q gi|254780896|r 105 ACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLI---------RFFRFPSS 175 (351) Q Consensus 105 ~~g~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~---------~~~~~~~~ 175 (351) ++|+++|+|++|+||+|++|+|++++|+++.++.||.++|+|++|+.+.+++..++.+..+.. ..++.+.+ T Consensus 176 ~~g~llG~P~LRLrG~YLAIaTLaf~eIi~~vl~n~~~lTGG~~Gi~gIp~p~lfG~~~~~~~~~~G~~~f~~~~g~~~~ 255 (416) T PRK11301 176 LFGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLLNLTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFHEFFGLKYD 255 (416) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99999988999803359999999999999999984366429975556799733255343444443333110000254556 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE Q ss_conf 00148999999999999999999996130599999996421222334202322367999998799999999999866440 Q gi|254780896|r 176 FVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDR 255 (351) Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~ 255 (351) ......+.|++++.++..+....+++.|||+||++||+||||++||++|+|+.|+|+.+|++|+++||+||++|+++.++ T Consensus 256 ~~~~~~~~Y~val~l~~~~~~v~~~L~rS~~GRal~AIRedE~AA~alGInv~r~KL~AFalsA~~AGlAGaLyA~~~g~ 335 (416) T PRK11301 256 PSHRVIFLYLVALLLVVLTLFVINRLLRMPLGRAWEALREDEIACRSLGLNPTRIKLSAFTIGAAFAGFAGTFFAARQGF 335 (416) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCE T ss_conf 32016999999999999999999998618585899999627999998597769999999999999999999999988163 Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 11354315899998898873474223899999999999999998731221000012344420258999999999999985 Q gi|254780896|r 256 ISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMR 335 (351) Q Consensus 256 v~p~~~~~~~~~~~~~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~r 335 (351) ++|++|++..|...++++++||+||.+|+++|+.++..++|.++.+ .++++.+++.+++++++|| T Consensus 336 IsP~~F~~~~S~~iL~mVVlGG~Gs~~G~ilGA~il~~LpE~lr~~---------------~~~r~lvfG~lLvl~mlf~ 400 (416) T PRK11301 336 VSPESFTFIESAFILAIVVLGGMGSQLGVILAAILLVVLPELMRDF---------------NEYRMLMFGLLMVLMMIWR 400 (416) T ss_pred ECCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHC T ss_conf 4833065999999797513327645199999999999999999765---------------6559999999999999986 Q ss_pred CCCCCCCCCCHHHCCC Q ss_conf 8996566740210159 Q gi|254780896|r 336 SHSLLRLRTPSNFLER 351 (351) Q Consensus 336 P~Gl~g~r~~~~~~~~ 351 (351) |||+.+.|+|+...|| T Consensus 401 P~GLlp~~r~~~~~~~ 416 (416) T PRK11301 401 PQGLLPMTRPHLELKN 416 (416) T ss_pred CCCCCCCCCCCHHHCC T ss_conf 9988998764313049 No 2 >COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism] Probab=100.00 E-value=0 Score=376.68 Aligned_cols=285 Identities=32% Similarity=0.516 Sum_probs=261.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 37999999999999999999999998432248999999999999999720-456-5303653357889889876544445 Q gi|254780896|r 37 KYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGS-RYG-LSIWLLIPVSAMISGACGMIMGLPS 114 (351) Q Consensus 37 ~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~-~~g-~~~~~ai~~a~~~~a~~g~l~g~~~ 114 (351) +|..++..+.++|+++++|+|+++|++|++|+||++|+++|||+++.+.. ..+ .++|++++.+.+++++.+.+.|+|+ T Consensus 26 ~~~~~l~~~~~i~~ilal~lnl~~G~aG~lslGha~F~glGAY~~a~l~~~~~g~~~~~~~l~~~~~~~al~g~l~g~p~ 105 (314) T COG4177 26 PFYLNLLTLILIYAILALGLNLVVGYAGLLSLGHAAFFGLGAYTAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPA 105 (314) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78999999999999999999999846006314779999989999999988875134289999999999999999998799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 43213457777999889899999855540587678857765211212347643434333310014899999999999999 Q gi|254780896|r 115 LKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLS 194 (351) Q Consensus 115 ~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (351) +|+||+|++|+|+++.++++....++...++|++|+...+.+...+.+ ......++..+..+.++ T Consensus 106 lRl~g~ylaI~Tla~~~~~~~~~~~~~~~tgG~~Gl~~i~~~~l~g~~---------------~~~~~~y~~~l~~l~l~ 170 (314) T COG4177 106 LRLRGDYLAIVTLAFGEIFRILLLNATELTGGENGLSGIPRPTLLGFP---------------SRARGLYYLALLLLLLT 170 (314) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHCCCC---------------CCHHHHHHHHHHHHHHH T ss_conf 998528999999999999999997166751998771268833230555---------------30299999999999999 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH Q ss_conf 99999961305999999964212223342023223679999987999999999998664401135431589999889887 Q gi|254780896|r 195 ASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVI 274 (351) Q Consensus 195 ~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vv 274 (351) ....+++.|||+||.+||+||||+++|++|+|+.++|..+|++|+++||+||++++.++++++|+++++..|+..+.+++ T Consensus 171 ~~~~~~l~~S~~Gr~l~AiRedE~~a~alG~n~~~~Kl~aF~isa~~AGiAGaL~a~~~~~v~p~~f~~~~S~~~l~~vv 250 (314) T COG4177 171 LLVLERLVRSPFGRALRAIREDEIAARALGINVTRYKLLAFVISAAIAGIAGALYALYLGFVSPESFSFTLSIEVLAMVV 250 (314) T ss_pred HHHHHHHHCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCHHCCHHHHHHHHHHHH T ss_conf 99999986497033686661578999985998899999999999999999999999981503800253999999999999 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 3474223899999999999999998731221000012344420258999999999999985899656674021 Q gi|254780896|r 275 LGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPSN 347 (351) Q Consensus 275 lGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~~~~ 347 (351) +||.||..|+++|+.++...++.++...+. ...+++.+++..+++++++||||+.|+||+.. T Consensus 251 lGG~Gt~~G~v~Ga~l~~~~~~~l~~~~~~-----------~~~~~~~v~G~llvlv~l~~P~Gl~g~~~~~~ 312 (314) T COG4177 251 LGGAGTLFGALLGAVLVVLLKELLRGLLPR-----------PVEYRLLVFGLLLVLVVLFRPRGLIGERRRRA 312 (314) T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC T ss_conf 847643188999999999999999762453-----------15899999999999999983776334034421 No 3 >TIGR03408 urea_trans_UrtC urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Probab=100.00 E-value=0 Score=353.08 Aligned_cols=283 Identities=18% Similarity=0.254 Sum_probs=241.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC-------------------C---- Q ss_conf 14723799999999999999999999999843224899999999999999972045-------------------6---- Q gi|254780896|r 33 TKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRY-------------------G---- 89 (351) Q Consensus 33 ~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~-------------------g---- 89 (351) +..++|.+++.+..++|+++|+|+++++|++|++||||++|+++|||++++..... + T Consensus 2 ~~~~~y~l~l~~~~~iyal~algl~l~~G~~G~~nfgh~af~~lGAY~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 81 (313) T TIGR03408 2 FHLSDFRLNLLGKYLCYAIVALGIDLIWGYTGILSLGQGVFFGLGGYAMAMYLKLQASGEGTTGLPDFMLWNGVTELPWF 81 (313) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHH T ss_conf 70254799999999999999999999998656953999999999999999999873123311131177764100013046 Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf ----53036533578898898765444454--321345777799988989999985554058767885776521121234 Q gi|254780896|r 90 ----LSIWLLIPVSAMISGACGMIMGLPSL--KFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTV 163 (351) Q Consensus 90 ----~~~~~ai~~a~~~~a~~g~l~g~~~~--rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~ 163 (351) .+++++++++..++++++.+++.+++ |+|++|+++.|+++.+.++....++...++|++|+...+.....+ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~rl~g~y~ai~Tla~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~--- 158 (313) T TIGR03408 82 WQPFASFPFALLAVVLVPGLLAFLLGYFVFRSRIKGVYFSIITQALALALALLFVGQQTGTGGTNGLTDFKTLLGFD--- 158 (313) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--- T ss_conf 53245699999999999999999999999988611218899999999999999963732258877666762012566--- Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76434343333100148999999999999999999996130599999996421222334202322367999998799999 Q gi|254780896|r 164 RSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIG 243 (351) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAg 243 (351) ..........++.+..++..+..+.++++|||+||.+||+||||++|+++|+|++|+|..+|++|+++|| T Consensus 159 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~~G~~lrAvr~ne~aa~~lGinv~r~k~~aF~isa~lag 228 (313) T TIGR03408 159 ----------LSSDSTKRALYFLTAALLALAFLLCRWLVRSRFGRVLIAIRDAENRVRFLGYDPANYKVFVFVLSAGIAG 228 (313) T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf ----------6664213899999999999999999999873898988857616699988288299999999999999999 Q ss_pred HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 99999986644011354315899998898873474223899999999999999998731221000012344420258999 Q gi|254780896|r 244 MAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTL 323 (351) Q Consensus 244 iaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 323 (351) +||++++.+.+.++|++++...++..++++++||.||++|+++|+.++..+++...... +..+..+ T Consensus 229 laG~l~a~~~~~v~P~~f~~~~~i~~~~~vvlGG~Gs~~GavlGa~ll~~l~~~~~~~~--------------~~~~~~i 294 (313) T TIGR03408 229 IAGALYVPQVGIISPSEMGIVPSIEMVIWVAVGGRGTLIGAVLGALLVNYAKTFFSEAF--------------PEAWLYI 294 (313) T ss_pred HHHHHHHHHCCEECHHHCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH T ss_conf 99999998706348343659999998883045688531899999999999999999865--------------6699999 Q ss_pred HHHHHHHHHHHCCCCCCCC Q ss_conf 9999999999858996566 Q gi|254780896|r 324 MVIALFLVILMRSHSLLRL 342 (351) Q Consensus 324 ~~~~lilvll~rP~Gl~g~ 342 (351) ++.++++++++||||++|. T Consensus 295 ~g~ili~ill~~P~GL~Gl 313 (313) T TIGR03408 295 LGALFVVVVLFLPKGLAGL 313 (313) T ss_pred HHHHHHHHHHHCCCCCCCC T ss_conf 9999999999918972178 No 4 >cd06581 TM_PBP1_LivM_like Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo Probab=100.00 E-value=0 Score=336.05 Aligned_cols=268 Identities=32% Similarity=0.561 Sum_probs=229.3 Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999998432248999999999999999720456530365335788988987654444543213457777 Q gi|254780896|r 46 ILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIA 125 (351) Q Consensus 46 ~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~ 125 (351) .++|+++|+|+++++|.+|.+|++|++++++|||.++++..+.++|+|++++++.++++++|.+++++..|.|++++.+. T Consensus 1 ~~IyaliAlGltli~g~~g~in~a~g~~~~lgay~~~~~~~~~g~~~~lai~~a~~~~~~~G~~~~~l~~r~~~~~~~i~ 80 (268) T cd06581 1 ILIYAILALGLNLLLGYAGQLSLGHAAFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFAIA 80 (268) T ss_pred CHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHH T ss_conf 98899999999999998193609999999999999999998807669999999999999999860234565265379999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 99988989999985554058767885776521121234764343433331001489999999999999999999961305 Q gi|254780896|r 126 TLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTA 205 (351) Q Consensus 126 Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~ 205 (351) |++.+..++....+....+.++++.+..+++...... ........+.....+..+..+.++++||| T Consensus 81 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~l~rT~ 146 (268) T cd06581 81 TLAFAEIVRLLALNWSSLTGGSNGLSGIPPPLLGGLL--------------LSSPLAFYYLVLAVLLLVLLLLRRLVRSP 146 (268) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999630235888776777630111444--------------33227999999999999999999998613 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 99999996421222334202322367999998799999999999866440113543158999988988734742238999 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSKIA 285 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~gs~~Ga~ 285 (351) +||++||++||||+||.+|||++|++..+|++|+++||++|++++.+.+.++|++++...+...++++++||.||++|++ T Consensus 147 ~G~~irAvg~n~~aA~~~GInv~rv~~~~f~isg~laglaG~l~~~~~~~~~p~~~g~~~~~~~~~~~vlGG~gsi~Ga~ 226 (268) T cd06581 147 FGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSIELLLMVVLGGLGSLLGPV 226 (268) T ss_pred CCEEHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHH T ss_conf 66358875328599997796899999999999999999999999987166180130189999999886154887659999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99999999999998731221000012344420258999999999999985899656 Q gi|254780896|r 286 KATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLR 341 (351) Q Consensus 286 lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g 341 (351) +|+.+++.+++....+. +.++....+..+++++++|||||+| T Consensus 227 iG~lilg~~~~~~~~~~--------------~~~~~~~~~~ili~vll~rP~GlfG 268 (268) T cd06581 227 LGAALLVLLPELLRSLG--------------PGLRLLVFGLLLILVVLFLPRGLVG 268 (268) T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999999999860--------------7899999999999999985998869 No 5 >TIGR03622 urea_t_UrtB_arc urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtB subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization. Probab=100.00 E-value=0 Score=328.60 Aligned_cols=278 Identities=15% Similarity=0.161 Sum_probs=222.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 37999999999999999999999998432248999999999999999720456530365335788988987654444543 Q gi|254780896|r 37 KYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLK 116 (351) Q Consensus 37 ~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~r 116 (351) .+.++.++.+.+|+++|+|+++++|++|++||+|++++++|||+++++..+.|+|+|.+++++.++++++|.+.+++..| T Consensus 2 ~~~l~~l~~~a~yaL~AlGl~Li~g~~g~~nfahg~f~~lGAY~a~~~~~~~glp~~~a~l~~~~~~~~~g~l~~~~~~r 81 (283) T TIGR03622 2 ALLLQFLDSFAFIVLAAVGLAVIFGMMGVINLAHGEFILVGAYGTTLTYHQAGLPLPVAMVSGVVMTVIFGIIVERLIIQ 81 (283) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 28999999999999999999999988570109999999999999999999970049999999999999999999889998 Q ss_pred HH-HHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 21-345--777799988989999985554058767885776521121234764343433331001489999999999999 Q gi|254780896|r 117 FR-GDY--LAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFL 193 (351) Q Consensus 117 l~-g~~--~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (351) .. +.+ ..+.|++...+.+...... .|.+... .+.+. ...+..........++........ T Consensus 82 ~l~~~~~~~li~t~gl~~i~~~~~~~~----~g~~~~~-~~~p~------------~~~~~~~~~~~~~~~~~~~~~~~~ 144 (283) T TIGR03622 82 HLYDRLLDSMVATFGLALILTQGLRIT----FGNSLDS-ISTPF------------GNVAYGPYTYSTYRVFLPLVAIGV 144 (283) T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHH----CCCCCCC-CCCCC------------CCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 860243999999999999999999996----1888756-78886------------544437612329999999999999 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHH Q ss_conf 99999996130599999996421222334202322367999998799999999999866440113543158999988988 Q gi|254780896|r 194 SASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIV 273 (351) Q Consensus 194 ~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~v 273 (351) ...++++++|||+||++||++||||+|+++|||++|+|..+|++|+++||+||+++++ ..+++|++ +.....+.++++ T Consensus 145 ~~~l~~~l~rT~~G~a~RAv~~n~~~A~~~GIn~~r~~~~~f~is~~lAg~aG~l~a~-~~~v~p~~-g~~~~~~~~~a~ 222 (283) T TIGR03622 145 LVGLYVLFTRTEFGVRARATIQDPETARAMGVDTDRMYVTTFAIGSGLAGLTGALYAP-IGAITPDR-GSIFLVEAFVAV 222 (283) T ss_pred HHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHEE T ss_conf 9999999986889898899965899997769787489999999999999999999987-50758661-489999986712 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 7347422389999999999999999873122100001234442025899999999999998589965667402 Q gi|254780896|r 274 ILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPS 346 (351) Q Consensus 274 vlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~~~ 346 (351) ++||.||++|+++|+.+++..++....+....+. .......+++++++||||++|++|.. T Consensus 223 ilGG~gs~~Gaiigg~ilg~~~~~~~~~~~~~~~-------------~~~~~~ili~vL~~rP~Gl~G~~e~~ 282 (283) T TIGR03622 223 VVGGPSVVLGTALAGGLLGFINAVFSNLYGTFVG-------------LIALLIVAIIALRVLPDGITGYIEQW 282 (283) T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHCCCCCCCCHHHC T ss_conf 1478765589999999999999999999658999-------------99999999999998799857072113 No 6 >TIGR03409 urea_trans_UrtB urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Probab=100.00 E-value=0 Score=322.67 Aligned_cols=279 Identities=19% Similarity=0.219 Sum_probs=217.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 799999999999999999999999843224899999999999999972045------65303653357889889876544 Q gi|254780896|r 38 YIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRY------GLSIWLLIPVSAMISGACGMIMG 111 (351) Q Consensus 38 ~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~------g~~~~~ai~~a~~~~a~~g~l~g 111 (351) .+.+-+....+|+++|+|+++++|++|++||+|++|+++|||+++.+.... ++++|++++++.+.++++|.+++ T Consensus 3 ~l~~gl~~g~iyal~AlGl~Li~g~~g~lnfahg~f~~~GAY~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~l~g~~i~ 82 (291) T TIGR03409 3 QLFSGLSLGSILLLAALGLAITFGQMGVINMAHGEFIMIGAYTTYVVQQLFSAPGLADLYLLIAIPLAFLVSALLGALIE 82 (291) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79999999999999999999999893820099999999999999999998705235578999999999999999999999 Q ss_pred HHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 445432-13--457777999889899999855540587678857765211212347643434333310014899999999 Q gi|254780896|r 112 LPSLKF-RG--DYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLL 188 (351) Q Consensus 112 ~~~~rl-~g--~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (351) ++..|. ++ ....+.|++...+++....... |.+......+....+. ... ......+..+++... T Consensus 83 ~~~~r~l~~~~~~~~i~t~g~~~~l~~~~~~~~----g~~~~~~~~p~~~~~~-----~~~----~g~~~~~~~~~~~~~ 149 (291) T TIGR03409 83 RTVIRHLYGRPLDTLLATWGISLILQQAARSIF----GAPNVPVTAPEWLSGG-----LEI----TGALSLPYNRLFIIV 149 (291) T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCHHHCCC-----CCC----CCCCCCCHHHHHHHH T ss_conf 999998812659999999999999999999930----8887676781430376-----011----675223199999999 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH Q ss_conf 99999999999961305999999964212223342023223679999987999999999998664401135431589999 Q gi|254780896|r 189 GMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENII 268 (351) Q Consensus 189 ~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~ 268 (351) ..+.++..++++++|||+||++||++|||++||++|||++|+|..+|++|+++||++|++++. .+.++|+. +...+.. T Consensus 150 ~~~~~~~~l~~~l~rT~~G~~lrAi~~n~~aA~~~GInv~r~~~~af~is~~laglaG~l~a~-~~~v~p~~-g~~~~~~ 227 (291) T TIGR03409 150 LALAVLLALALLLYRTRLGLRVRAVTQNRVMAAALGINTRRVDALTFALGSGIAGVAGVALTL-IGNVGPTL-GQGYIVD 227 (291) T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCC-HHHHHHH T ss_conf 999999999999837856588888724799999859989999999999999999999999998-86589752-3999999 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 8898873474223899999999999999998731221000012344420258999999999999985899656674 Q gi|254780896|r 269 VISIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRT 344 (351) Q Consensus 269 ~~~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~ 344 (351) .++++++||+||++|+++|+.+++..++....+... .++..+.+..+++++++|||||+|+|+ T Consensus 228 ~~~~~vlGG~gs~~Gai~Ga~~lg~l~~~~~~~~~~-------------~~~~~~~~~~li~vLl~rP~Gl~g~k~ 290 (291) T TIGR03409 228 SFLVVVFGGVGSLWGTVVAAFGLGVANKILEYFTGA-------------SLAKVLVLVLIILFLQWRPQGLFALKG 290 (291) T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 999999746564589999999999999999987028-------------999999999999999986998689998 No 7 >PRK10740 branched-chain amino acid transporter permease subunit LivH; Reviewed Probab=100.00 E-value=0 Score=317.94 Aligned_cols=287 Identities=16% Similarity=0.209 Sum_probs=210.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC---CCC-CHHHHHHHHHHHH----HHHHHHH Q ss_conf 9999999999999999999999984322489999999999999997204---565-3036533578898----8987654 Q gi|254780896|r 39 IDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSR---YGL-SIWLLIPVSAMIS----GACGMIM 110 (351) Q Consensus 39 ~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~---~g~-~~~~ai~~a~~~~----a~~g~l~ 110 (351) ..+-+....+|+++|+|+++++|++|++||+||+++++|||.++++... .+. +.|...+.+.+.+ +.++... T Consensus 12 l~~Gl~~G~iyaL~AlGl~Li~G~~gv~Nfahg~f~~~GaY~~~~l~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~g~~i 91 (308) T PRK10740 12 MFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDTSWLLVAAGFVGAIVIASAYGWSI 91 (308) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999957797999999999999999999998856531479999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 44454321345777799988989999985554058767885776521121234764343433331001489999999999 Q gi|254780896|r 111 GLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGM 190 (351) Q Consensus 111 g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (351) ++...|....+..+.++..+..+..++.+....+.|+++...++..+ +.+. ....+......+....+..... T Consensus 92 ~r~~~r~~~~~~~~~~li~t~gl~~~l~~~~~~~~g~~~~~~p~~~~--~~~~-----~~~~~~~~~~~~~~~l~~~~v~ 164 (308) T PRK10740 92 ERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFN--GQWV-----VGHSENFSASITTMQAVIWIVT 164 (308) T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCC-----CCCCCCCCEEEHHHHHHHHHHH T ss_conf 99999986445259999999999999999999803977650785456--7542-----3555454333219999999999 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHH Q ss_conf 99999999996130599999996421222334202322367999998799999999999866440113543158999988 Q gi|254780896|r 191 CFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVI 270 (351) Q Consensus 191 ~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~ 270 (351) +..+..++++++|||+||++||++|||++|+++|||++|+|..+|++++++||+||+++++..+.++|+. +...+...+ T Consensus 165 ~~~~~~l~l~l~rT~~G~a~RAv~~n~~~A~~~GIn~~rv~~~af~i~~~laglaG~l~a~~~~~i~P~~-g~~~~~~~f 243 (308) T PRK10740 165 FLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYI-GFMAGMKAF 243 (308) T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH T ss_conf 9999999999972839689999966788998909889999999999999999999999987743658432-489999998 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 9887347422389999999999999999873122100001234442025899999999999998589965667402 Q gi|254780896|r 271 SIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPS 346 (351) Q Consensus 271 ~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~~~ 346 (351) +++++||+||++|+++|+.+++..|+....+.. ..++....+..+++++++|||||+|+||.+ T Consensus 244 ~~vvlGGlGs~~Gaivgal~lg~~e~~~~~~~~-------------~~~~~~~~~~llilvLl~rP~GLfG~~~~~ 306 (308) T PRK10740 244 TAAVLGGIGSIPGAMIGGLILGIAEALSSAYLS-------------TEYKDVVSFALLILVLLVMPTGILGRPEVE 306 (308) T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCEE T ss_conf 962137877489999999999999999998623-------------789999999999999998599868998100 No 8 >cd06582 TM_PBP1_LivH_like Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo Probab=100.00 E-value=0 Score=304.73 Aligned_cols=268 Identities=22% Similarity=0.289 Sum_probs=210.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HH Q ss_conf 999999999999999999984322489999999999999997204565303653357889889876544445432---13 Q gi|254780896|r 43 GIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKF---RG 119 (351) Q Consensus 43 ~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl---~g 119 (351) +....+|+++|+|+++++|++|++|++|++++++|||+++.+..++++|+|.+++++.++++++|.+++.+..|. +. T Consensus 2 L~~a~i~ai~Algl~l~~g~~G~i~lg~~~~~~lgay~~~~l~~~~g~~~~~~~~~a~~~~~~~g~~~g~~~~r~~~~~~ 81 (272) T cd06582 2 LALGAIYALIALGLTLIFGVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLRPLRGAP 81 (272) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78999999999999999999198608999999999999999999837649999999999999999999999999996410 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45777799988989999985554058767885776521121234764343433331001489999999999999999999 Q gi|254780896|r 120 DYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIIL 199 (351) Q Consensus 120 ~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (351) .+..+.|++.............. +..+....+... +..... .........+.+...+.....+++ T Consensus 82 ~~~~~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 146 (272) T cd06582 82 LLTLLITFGGLLILLQGLLLIFG---GDPRVPPPPLLS-------GSVELG-----GVTIPPYRLFIIAVALVLLAALYL 146 (272) T ss_pred HHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCC-------CCHHCC-----CCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 79999999999999999999606---888777865332-------103316-----603418999999999999999999 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 96130599999996421222334202322367999998799999999999866440113543158999988988734742 Q gi|254780896|r 200 WLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMT 279 (351) Q Consensus 200 ~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~g 279 (351) +++|||+||++||+||||++||++|||++|+|..+|++|+++||+||++++.+.+ .+|+. +...+++.++++++||.| T Consensus 147 ~l~rT~~Gr~l~Ai~~n~~aA~~~Ginv~r~k~~af~isg~laglaG~l~a~~~~-~~~~~-~~~~~~~~i~~vvlGG~g 224 (272) T cd06582 147 FLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITG-VSPTM-GLLLLLKAFAAVVLGGLG 224 (272) T ss_pred HHHHCCCCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHEEECCCC T ss_conf 9983950456847633989998859988898799989999999999999999865-79850-378998887820368988 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 2389999999999999999873122100001234442025899999999999998589965 Q gi|254780896|r 280 SLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLL 340 (351) Q Consensus 280 s~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~ 340 (351) |++|+++|+.++..+++....+.+ ..++..+.+..+++++++||||++ T Consensus 225 s~~G~v~Ga~~~~~l~~~~~~~~~-------------~~~~~~~~~~~li~vll~~P~Glf 272 (272) T cd06582 225 SIPGAVVGGLLLGLAESLAAAYLS-------------SGYKDAVAFVLLILVLLVRPQGLF 272 (272) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 569999999999999999998514-------------999999999999999997489999 No 9 >COG0559 LivH Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism] Probab=100.00 E-value=1.4e-45 Score=296.16 Aligned_cols=279 Identities=24% Similarity=0.299 Sum_probs=222.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999998432248999999999999999720456----5303653357889889876544445 Q gi|254780896|r 39 IDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYG----LSIWLLIPVSAMISGACGMIMGLPS 114 (351) Q Consensus 39 ~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g----~~~~~ai~~a~~~~a~~g~l~g~~~ 114 (351) +.+-+....+|++.|+|++++||.+|++||+||+++++|||+++......+ ++.....+++.+.++.+|.+.++.+ T Consensus 10 l~nGL~~GsiyaL~AlGltlvygv~rviNfAHG~~~m~Gay~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~er~v 89 (297) T COG0559 10 LVNGLSLGSIYALLALGLTLVYGVLRVINFAHGEFFMLGAYAAYLAVALLGPLGALGLLLALPLAFAITALIGLLIERLV 89 (297) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999981641133999999999999999973233223799999999999999999999999 Q ss_pred HHH-H--H-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 432-1--3-45777799988989999985554058767885776521121234764343433331001489999999999 Q gi|254780896|r 115 LKF-R--G-DYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGM 190 (351) Q Consensus 115 ~rl-~--g-~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (351) .|. + + ....+.|++.+.++++..... .|++....++ ...+. .. .......+..+.+.+... T Consensus 90 ~rpl~~~~~l~~liat~G~~l~l~~~~~~~----~g~~~~~~p~--~~~~~-----~~----~~g~~~~~~~~l~~~~~s 154 (297) T COG0559 90 LRPLRGRPALALLIATLGVSLILQGLARLI----FGPRPVGLPP--ALSGS-----VR----FLGGVTLPTYRLFIIAVS 154 (297) T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHE----ECCCCCCCCH--HHCCC-----CC----CCCCCCCHHHHHHHHHHH T ss_conf 999732884699999999999999999993----5876666771--42144-----21----032001069999999999 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHH Q ss_conf 99999999996130599999996421222334202322367999998799999999999866440113543158999988 Q gi|254780896|r 191 CFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVI 270 (351) Q Consensus 191 ~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~ 270 (351) +..+..++++++|||+|+++||+.|||++|+.+|||++|+...+|++++++||+||++++... .++|++ +.....+.+ T Consensus 155 ~~~~~~l~~~l~rT~~G~a~RA~~~n~~~A~l~GInv~~v~~~tf~lg~~lAglaGvl~~~~~-~v~p~~-G~~~~l~~F 232 (297) T COG0559 155 LALLLGLWLLLRRTRLGRALRAVAENRKMAALLGINVERVIALTFALGGALAGLAGVLLAPIY-TVSPYM-GFLYGLKAF 232 (297) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCH-HHHHHHHHH T ss_conf 999999999999837718898760489899880986899999999999999999999999873-679522-179999999 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH Q ss_conf 9887347422389999999999999999873122100001234442025899999999999998589965667402 Q gi|254780896|r 271 SIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPS 346 (351) Q Consensus 271 ~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~~~ 346 (351) +++|+||.||++|+++|+.+++..++.... ....+.+...+.+..+++++++||+|++|+||.. T Consensus 233 ~~~VlGGlgSi~GA~~gglliG~~e~~~~~------------~~~~~~~~~~v~f~lli~vLl~rP~GL~g~~~~~ 296 (297) T COG0559 233 AAVVLGGLGSIPGAVLGGLLLGLAESLVSA------------KYFGSEYKDVVAFLLLILVLLVRPQGLFGRKERE 296 (297) T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCC------------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 986426756378999999999999998602------------3326679999999999999997477555755223 No 10 >pfam02653 BPD_transp_2 Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system. Probab=100.00 E-value=5.1e-43 Score=279.13 Aligned_cols=263 Identities=22% Similarity=0.248 Sum_probs=204.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999843224899999999999999972045653036533578898898765444454321 Q gi|254780896|r 39 IDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFR 118 (351) Q Consensus 39 ~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~ 118 (351) +.+.+.+..+|+++|+|+++++ .+|++|++|++++++|+|+++++..+.+.|+|.+++++.+.++++|.+++++..|.| T Consensus 2 l~~~l~~~~i~~l~Alg~~l~~-~~G~in~a~g~~~~lgay~~~~l~~~~~~~~~~~~~~a~~~~~~~g~i~~~~~~r~~ 80 (267) T pfam02653 2 LLNILTQAAILGIAALGLTLVF-IAGVINLGVGGFMALGAYVAALLLALGGSNLWLALLAGLLVGAAVGLLNGLLVVRLK 80 (267) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8899999999999999999999-978835799999999999999999980530899999999999999997458676521 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 345777799988989999985-5540587678857765211212347643434333310014899999999999999999 Q gi|254780896|r 119 GDYLAIATLIMSEIFQNILIK-WKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASI 197 (351) Q Consensus 119 g~~~~i~Tl~~~~i~~~~~~~-~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (351) .+++. .|+....+...+... +...+.+..+....+. ..............+..+..+..+..+ T Consensus 81 ~~~~~-~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (267) T pfam02653 81 VPEVI-VTLLLNFILRGLTLFLLTGILGGPAGTSTIVD---------------LLGFPGLFLSFGFGVIFLLALLLALLV 144 (267) T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 42999-99999999999999998635578877555532---------------554200211257999999999999999 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCC Q ss_conf 99961305999999964212223342023223679999987999999999998664401135431589999889887347 Q gi|254780896|r 198 ILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGG 277 (351) Q Consensus 198 ~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG 277 (351) +++++|||+||++||++|||++||++|||++|+|..+|++|+++||++|++++.+.+.++|+ ++...+.+.++++++|| T Consensus 145 ~~~l~~T~~G~~lrAv~~n~~aA~~~GI~~~~~~~~~f~is~~laglaG~l~~~~~~~~~p~-~~~~~~~~~~~~~viGG 223 (267) T pfam02653 145 WLLLRRTRFGRALRAVGENPRAARYAGINVKRTKILAFVLSGALAGLAGALLVLSTGSADPN-AGLGLGFDAIAAVVLGG 223 (267) T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHEEEECC T ss_conf 99999588846999996659999886998899999999999999999999999883564878-42769989775101689 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 42238999999999999999987312210000123444202589999999999 Q gi|254780896|r 278 MTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFL 330 (351) Q Consensus 278 ~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lil 330 (351) .||++|+++|+.+++.+++....+.. ....++..+.++.+++ T Consensus 224 ~gs~~G~~~ga~~lg~~~~~~~~~~g-----------~~~~~~~~i~g~ill~ 265 (267) T pfam02653 224 AGSPIGAIVGALIIGLLQSLGLTLLG-----------IPPELSLLVQGAILIA 265 (267) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHE T ss_conf 99629999999999999999999829-----------9889999999865113 No 11 >cd06574 TM_PBP1_branched-chain-AA_like Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBP Probab=100.00 E-value=2.4e-43 Score=281.12 Aligned_cols=239 Identities=22% Similarity=0.290 Sum_probs=192.7 Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999998432248999999999999999720456530365335788988987654444543213457777 Q gi|254780896|r 46 ILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIA 125 (351) Q Consensus 46 ~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~ 125 (351) ..+|+++|+|+++++|++|++||+|++++++|||+++.+.. .++|+|++++++.+.++++|.+++++..|.|.+++ +. T Consensus 1 G~iyal~AlGl~lv~g~~g~inla~g~~~~lGay~~~~~~~-~g~~~~lal~~a~~~~~l~g~~~g~~~~r~~~~~~-i~ 78 (266) T cd06574 1 GLIYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIV-AGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGL-LA 78 (266) T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HH T ss_conf 97899999999999999087248999999999999999998-71129999999999999999999766620022079-99 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 99988989999985554058767885776521121234764343433331001489999999999999999999961305 Q gi|254780896|r 126 TLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTA 205 (351) Q Consensus 126 Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~ 205 (351) |+......+.+.........+....... ................++........+..++++++||| T Consensus 79 tl~~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rT~ 144 (266) T cd06574 79 GILIMIGLYSINLRIMGGPNIPLGTRDT--------------LLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTK 144 (266) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCC--------------CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCH T ss_conf 9999999999999996466667787654--------------54135541011006899999999999999999998797 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCC------ Q ss_conf 99999996421222334202322367999998799999999999866440113543158999988988734742------ Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMT------ 279 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~g------ 279 (351) +||++||++|||++||++|||++|+|..+|++|+++||+||+++++++++++|++ +...+++.++++++||.+ T Consensus 145 ~G~~lrAvg~n~~aA~~~GInv~r~~~~af~isg~laglAG~l~a~~~~~~~p~~-g~~~~l~~~aavvlGG~~~~~~~~ 223 (266) T cd06574 145 LGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNM-GIGTGVIGLAAVIIGGAIVGRRTI 223 (266) T ss_pred HHHHHEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHCCCEECCCCCC T ss_conf 8485413438879999869975788878999999999999999999957748562-346999987954238710157998 Q ss_pred --CHHHHHHHHHHHHHHHHHHHHH Q ss_conf --2389999999999999999873 Q gi|254780896|r 280 --SLSKIAKATAILIGVVELCCGM 301 (351) Q Consensus 280 --s~~Ga~lGa~~l~~~~~~~~~~ 301 (351) |++|+++|+.++..+++..... T Consensus 224 ~gsi~Gavlgall~~~~~~~~~~~ 247 (266) T cd06574 224 KASILGVIIGAILYRIALALALGS 247 (266) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 762799999999999999999982 No 12 >cd06579 TM_PBP1_transp_AraH_like Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to ge Probab=100.00 E-value=3.5e-44 Score=286.24 Aligned_cols=254 Identities=19% Similarity=0.159 Sum_probs=199.5 Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999984322489999999999999997204565303653357889889876544445432134577779 Q gi|254780896|r 47 LIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIAT 126 (351) Q Consensus 47 ~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~T 126 (351) .+|+++|+|+++++ .+|.+|++|++++++|+|+++++..+.++|+|++++++.++++++|.+.+++..|.|.+++ ++| T Consensus 2 aiyal~AlGl~lv~-~~g~inla~ga~~~lGay~~~~l~~~~g~~~~~~~~~a~~~~~~~g~i~g~l~~r~~~~~~-i~T 79 (263) T cd06579 2 AVLGILALGMTLVI-ITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPF-IVT 79 (263) T ss_pred HHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHH T ss_conf 79999999999999-9869738999999999999999999769867999999999999998676278886514689-999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 99889899999855540587678857765211212347643434333310014899999999999999999999613059 Q gi|254780896|r 127 LIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAI 206 (351) Q Consensus 127 l~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~ 206 (351) ++..++.+.....+. +.++....+.......... ... . .++..+.....+...+++++|||+ T Consensus 80 l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~-------~----~~~~~~~~~~~~~~~~~~l~rT~~ 141 (263) T cd06579 80 LGTMFILRGLALLIT----GGRPISGLPPLFSFFLGGG---LIL-------G----IPVPVLIALAVALVAWFLLRRTRF 141 (263) T ss_pred HHHHHHHHHHHHHHC----CCCCCCCCCHHHHHHHHHC---CCC-------C----CHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999999860----8988777884888775314---556-------5----049999999999998988816756 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHC------CCCC Q ss_conf 9999996421222334202322367999998799999999999866440113543158999988988734------7422 Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILG------GMTS 280 (351) Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlG------G~gs 280 (351) ||++||++|||++||++|+|++|+|..+|++|+++||+||++++.+.++++|+. +.....+.++++++| |.|| T Consensus 142 G~~lrAv~~n~~~A~~~Gi~v~r~~~~af~is~~laglAG~l~a~~~~~v~p~~-g~~~~~~~~~~vviGG~~~~GG~Gs 220 (263) T cd06579 142 GRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTA-GNGYELDAIAAVVLGGTSLTGGRGS 220 (263) T ss_pred CCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCHHEEEEEEEHHHCCCCCC T ss_conf 110443131899999839986896548998989999999999998836668552-5775321530242320031398367 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 38999999999999999987312210000123444202589999999999999 Q gi|254780896|r 281 LSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVIL 333 (351) Q Consensus 281 ~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll 333 (351) ++|+++|+.+++.+++.+.... ..+.+++...+.+++++++ T Consensus 221 ~~G~viGa~~l~~l~~~l~~~~------------~~~~~~~~v~g~ili~~v~ 261 (263) T cd06579 221 VLGTLLGALLLGVLNNGLNLLG------------VSSFWQQIVKGAILLLAVA 261 (263) T ss_pred HHHHHHHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHEEEEE T ss_conf 2999999999999999999829------------9989999999988124577 No 13 >PRK11618 inner membrane ABC transporter permease protein YjfF; Provisional Probab=100.00 E-value=2.3e-37 Score=244.76 Aligned_cols=305 Identities=16% Similarity=0.109 Sum_probs=222.6 Q ss_pred HHHHHHHHHHHHHHHHHH-H-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 669999999999999999-9-75301472379999999999999999999999984322489999999999999997204 Q gi|254780896|r 10 KYDKILCLLAVVYPLLLF-L-FLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSR 87 (351) Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~ 87 (351) |+...+..+++...+..+ . ..|.+.+.+++.++..+..+.+++|+|++++. .+|.+|++.++.++++++..+.+..+ T Consensus 4 r~~p~~i~i~vlivl~i~~~~~~p~Fls~~Nl~~il~~~a~l~I~AlG~t~vi-i~GgIDLSvGs~~~l~~~v~a~l~~~ 82 (317) T PRK11618 4 RNLPLLITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAVLIGR 82 (317) T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 41459999999999999999918988888999999999999999999999999-95786052999999999999999986 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 56530365335788988987654444543213457777999889899999855540587678857765211212347643 Q gi|254780896|r 88 YGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLI 167 (351) Q Consensus 88 ~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~ 167 (351) .|+|+|+++++++++++++|.++|+.+.|.|-+.+ |+|++...+.+.+.... +++...... +..... T Consensus 83 ~g~~~~lai~~~l~~g~~~G~iNG~lv~~~~ipsf-IvTLg~~~i~~Gl~~~~---~~~~~~~~~---~~~~~~------ 149 (317) T PRK11618 83 YGWHPLLAFPLVLVMGALFGALMGALIHYLKLPAF-IVTLAGMFLARGVSFLV---SEESIPINH---PIYDTL------ 149 (317) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHH---CCCCCCCCC---CHHHHH------ T ss_conf 69858999999999999999999999999727829-99999999999999986---188724577---247777------ Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 43433331001489999999999999999999961305999999964212223342023223679999987999999999 Q gi|254780896|r 168 RFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGA 247 (351) Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~ 247 (351) .......... ....+..+.........++.++|||+||+++|+++|||+||.+|||++|+|..+|++||.+||+||. T Consensus 150 ~~~~~~~~~~---~~ip~~~~i~l~~~~~~~~~l~~T~~GR~lyAvG~N~~AA~~sGI~v~r~~i~~fvisG~~aglAGi 226 (317) T PRK11618 150 SSLAWKLPGG---GRLTAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGVPVRRTTIRIYALSGFLAALAGI 226 (317) T ss_pred HHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHCHHHCEEEEECCCHHHHHHCCCCCHHEEEHHHHHHHHHHHHHHH T ss_conf 7777662468---7414999999999999999997482006688867989999994998234220799999999999999 Q ss_pred HHHHHHHEECCCCCCHHHHHHHHHHHHH------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH Q ss_conf 9986644011354315899998898873------4742238999999999999999987312210000123444202589 Q gi|254780896|r 248 FFAASRDRISPDMFKFSENIIVISIVIL------GGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHT 321 (351) Q Consensus 248 l~a~~~~~v~p~~~~~~~~~~~~~~vvl------GG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (351) +++.+.+..+|+. +..+.++.++++++ ||.||++|+++|+.++..+++.+.... ...+.++. T Consensus 227 l~~~~~~s~~~~~-G~~~~l~aIaAvviGGtsl~GG~Gsv~Gt~lGal~l~~i~ngl~l~g-----------~v~~~~q~ 294 (317) T PRK11618 227 VFSLYTSAGYALA-AVGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDG-----------TLSSWWTK 294 (317) T ss_pred HHHHHHCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----------CCCHHHHH T ss_conf 9999845818676-76658999999998576778995146999999999999999998637-----------89879999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99999999999985899656674 Q gi|254780896|r 322 TLMVIALFLVILMRSHSLLRLRT 344 (351) Q Consensus 322 ~l~~~~lilvll~rP~Gl~g~r~ 344 (351) ...+.++++ -+.-.||+--+-| T Consensus 295 ~~~G~ill~-aV~l~r~l~~~~~ 316 (317) T PRK11618 295 IVIGILLFV-FIALQRGLTVLWE 316 (317) T ss_pred HHHHHHHHH-HHHHHHHHHHHHC T ss_conf 999999899-9997414888614 No 14 >PRK11285 araH L-arabinose transporter permease protein; Provisional Probab=100.00 E-value=3.4e-36 Score=237.67 Aligned_cols=271 Identities=19% Similarity=0.253 Sum_probs=209.1 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 97530147237999999999999999999999998432248999999999999999720456530365335788988987 Q gi|254780896|r 28 LFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACG 107 (351) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g 107 (351) ...|.+.+..++.+++.+....+++|+|++++. .+|.+|++.++.+++++...+.+... +.++|+++++++++++++| T Consensus 45 i~~p~Fls~~Nl~~il~~~a~l~i~AlG~t~vi-i~GgIDLSvgs~~~l~~v~~~~~~~~-~~~~~lai~~~l~~G~~~G 122 (327) T PRK11285 45 LFVPNFATFINMKGLGLSISMIGMVACTMMFCL-ASGDFDLSVASVVAFAGVVAAVVINA-TESVWLGVAAGLLAGAAVG 122 (327) T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCEEECHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH T ss_conf 947887888899999999999999999999999-93780153988999999999999974-7878999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 65444454321345777799988989999985554058767885776521121234764343433331001489999999 Q gi|254780896|r 108 MIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVL 187 (351) Q Consensus 108 ~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (351) .++|+.+.+.|-+.+ |+|++...+.+.+..- +++|. .+... ++.+.... .....+ ..... T Consensus 123 ~iNG~lv~~~~ip~f-I~TLgt~~i~~Gl~~~---~t~g~-~i~~~-~~~~~~~~---~~~~~g-----------ip~~~ 182 (327) T PRK11285 123 LVNGFVIARLRINAL-ITTLATMQIVRGLAYI---ISDGK-AVGIS-DERFFALG---YASFFG-----------VPAPI 182 (327) T ss_pred HHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHE---ECCCE-EECCC-CHHHHHHH---CCCCCC-----------CCHHH T ss_conf 998386761078579-9999999999987853---32884-32558-88999851---384237-----------54899 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH Q ss_conf 99999999999996130599999996421222334202322367999998799999999999866440113543158999 Q gi|254780896|r 188 LGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENI 267 (351) Q Consensus 188 ~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~ 267 (351) +..+......++.++|||+||+++|+++||++|+.+|||++|+|..+|+++|.+||+||.+++.+.+..+|+. +..+.+ T Consensus 183 ~i~ii~~~~~~~~l~~T~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~ay~isG~laglAGil~~ar~~s~~~~~-G~~~~l 261 (327) T PRK11285 183 WLTVACFVVFGFLLNKTVFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMT-SIGFEL 261 (327) T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHH T ss_conf 9999999999999963405459988169899998818983374019999999999999999999846758576-755599 Q ss_pred HHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 988988734------742238999999999999999987312210000123444202589999999999999 Q gi|254780896|r 268 IVISIVILG------GMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVIL 333 (351) Q Consensus 268 ~~~~~vvlG------G~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll 333 (351) +.++++++| |.||++|+++|++++..+++.+.... ..+.++....+.++++... T Consensus 262 ~aIAAvvlGGtsl~GG~Gsv~Gt~~Gal~l~~i~ngl~~~g------------v~~~~q~~v~G~iii~aV~ 321 (327) T PRK11285 262 IVISACVLGGVSLKGGIAKISGVVAGVLIMGTVENAMNLLN------------ISPFYQYVVRGLILLAAVL 321 (327) T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHHHHH T ss_conf 99999998575777997238999999999999999999809------------9889999999999999999 No 15 >COG1172 AraH Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism] Probab=100.00 E-value=3.4e-36 Score=237.67 Aligned_cols=268 Identities=20% Similarity=0.188 Sum_probs=213.0 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 301472379999999999999999999999984322489999999999999997204-5653036533578898898765 Q gi|254780896|r 31 GATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSR-YGLSIWLLIPVSAMISGACGMI 109 (351) Q Consensus 31 ~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~-~g~~~~~ai~~a~~~~a~~g~l 109 (351) |.+.+.+++.++..+..+.+++|+|++++. .+|.+|++.|+.+++.++.++.+... .+.+++.+++.+.+.++++|++ T Consensus 30 p~Fls~~nl~~il~~~~~lgilA~g~t~vi-itGgIDLSvGsv~al~~~~~a~~~~~~~~~~~~~a~~~~l~~g~~~G~i 108 (316) T COG1172 30 PGFLSLSNLLNILRQAAILGILALGMTFVI-ITGGIDLSVGSVVALAAVVAASLLAAGGGLPILLALLAALAVGALIGLI 108 (316) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 540489999999999999999999999999-9578556199999999999999998463334899999999999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 44445432134577779998898999998555405876788577652112123476434343333100148999999999 Q gi|254780896|r 110 MGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLG 189 (351) Q Consensus 110 ~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (351) +|..+.|.|-+.+ ++|++...+.+.+..-. ++|.. +. . ++.+....+. ..++ .+...+. T Consensus 109 NG~lv~~~~ip~f-I~TLgt~~i~rGl~l~~---t~G~~-i~--~-~~~~~~~g~~--~~~G-----------iP~~~~i 167 (316) T COG1172 109 NGLLVARLRIPPF-IATLGTMFILRGLALLL---TGGRP-IS--L-PDAFAWLGSG--RILG-----------IPVPVII 167 (316) T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHHHHHHH---CCCCC-CC--C-CHHHHHHCCC--CEEC-----------CCHHHHH T ss_conf 9899998178829-99888999999999887---09926-77--9-7899984358--5428-----------7099999 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHH Q ss_conf 99999999999613059999999642122233420232236799999879999999999986644011354315899998 Q gi|254780896|r 190 MCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIV 269 (351) Q Consensus 190 ~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~ 269 (351) .+..+...++.++|||+||+++|+++||++|+.+|||++|+|..+|++|+.+|+++|.+++.+.+..+|+. +..+..+. T Consensus 168 ~i~~~~~~~~~l~rT~~Gr~iyAvG~N~~AA~~sGI~v~rv~i~~y~isG~lAaiaGi~~~~~~~s~~~~~-g~~~eL~a 246 (316) T COG1172 168 FIVVAALFWLLLRRTRFGRSIYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAALAGILLAARLGSAQPNA-GVGYELDA 246 (316) T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHH T ss_conf 99999999999845601478989789899999849881224424689999999999999999965848564-54548888 Q ss_pred HHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 89887347------42238999999999999999987312210000123444202589999999999999 Q gi|254780896|r 270 ISIVILGG------MTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVIL 333 (351) Q Consensus 270 ~~~vvlGG------~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll 333 (351) ++++|+|| .||+.|+++|++++..+++.+.... ..+.++..+.+..+++.+. T Consensus 247 IAAvViGGtsL~GG~Gsv~Gt~iGalil~~l~ngl~l~~------------v~~~~q~~i~G~iil~av~ 304 (316) T COG1172 247 IAAVVIGGTSLAGGRGSVIGTLLGALILGVLQNGLNLLG------------VSSYWQQIIKGLIILLAVA 304 (316) T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHH T ss_conf 897541774766884045999999999999998899929------------9889999999999999999 No 16 >PRK09512 rbsC ribose ABC transporter permease protein; Reviewed Probab=100.00 E-value=2.1e-36 Score=238.90 Aligned_cols=278 Identities=14% Similarity=0.137 Sum_probs=210.1 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 99999753014723799999999999999999999999843224899999999999999972045653036533578898 Q gi|254780896|r 24 LLLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMIS 103 (351) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~ 103 (351) ...-...|.+.+..++.++..+..+++++|+|++++. .+|.+|++.++.+++++..++.+. ..+.|+|++++++.+++ T Consensus 31 ~~f~~~~p~Fls~~N~~~il~~~a~~~ilalG~~~vi-i~GgiDLSvgs~~~l~~~~~~~l~-~~~~~~~lai~~~l~~G 108 (321) T PRK09512 31 AIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVI-LTSGIDLSVGSLLALTGAVAASIV-GIEVNALVAVPAALALG 108 (321) T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHH T ss_conf 9999938886888999999999999999999999999-928973759999999999999984-36897899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 89876544445432134577779998898999998555405876788577652112123476434343333100148999 Q gi|254780896|r 104 GACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFM 183 (351) Q Consensus 104 a~~g~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (351) +++|.++|+.+.+.|-+.+ |+|++...+.+.+..... +|.. +..... .. .+.....+. ...... T Consensus 109 ~~~G~iNG~lV~~~~ip~~-I~TLgt~~i~~Gl~~~~t---~g~~-i~~~~~-~~-----~~~~~~~~~-g~~~gi---- 172 (321) T PRK09512 109 AAIGAVTGVIVAKGKVQAF-IATLVMMLLLRGVTMVYT---DGSP-INTGFT-DN-----ADLFGWFGI-GRPLGV---- 172 (321) T ss_pred HHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHH---CCCC-CCCCCC-CC-----HHHHHHHHC-CCCCCC---- T ss_conf 9999998587763367779-999999999999999982---9921-246776-43-----589999743-651565---- Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCH Q ss_conf 99999999999999999613059999999642122233420232236799999879999999999986644011354315 Q gi|254780896|r 184 YYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKF 263 (351) Q Consensus 184 ~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~ 263 (351) +...+....+....++.++|||+||+++|+++|||+||.+|||++|+|..+|+++|.+||++|.+++.+.++.+|+. +. T Consensus 173 p~~~~i~i~v~ii~~~~l~~T~~Gr~lyAiG~N~~AA~~sGI~v~r~~i~~f~lsg~laglaGil~~~~~~s~~p~~-g~ 251 (321) T PRK09512 173 PTPVWIMAIVFAAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLAALAGIIEVARLSSAQPTA-GT 251 (321) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCC-CC T ss_conf 69999999999999999986688748879779899999809885148874799999999999999999707888433-44 Q ss_pred HHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 899998898873474------223899999999999999998731221000012344420258999999999999 Q gi|254780896|r 264 SENIIVISIVILGGM------TSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVI 332 (351) Q Consensus 264 ~~~~~~~~~vvlGG~------gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvl 332 (351) .+.++.++++++||. ||++|+++|+.++..+++.+.... ..+.++....+.++++.+ T Consensus 252 ~~~l~aIaAvviGG~sl~GG~G~v~Gt~lGal~l~~i~~gl~~~g------------v~~~~q~~v~G~ili~AV 314 (321) T PRK09512 252 GYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNALNLLG------------VSSYYQMIVKAVVILLAV 314 (321) T ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHHHE T ss_conf 347999999998043656980774999999999999999998819------------988999999999974314 No 17 >PRK09478 mglC beta-methylgalactoside transporter inner membrane component; Provisional Probab=100.00 E-value=2.1e-35 Score=232.81 Aligned_cols=278 Identities=15% Similarity=0.114 Sum_probs=208.4 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC-----------CCCCHHHHHH Q ss_conf 75301472379999999999999999999999984322489999999999999997204-----------5653036533 Q gi|254780896|r 29 FLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSR-----------YGLSIWLLIP 97 (351) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~-----------~g~~~~~ai~ 97 (351) ..|.+.+..++.++..+..+.+++|+|++++. .+|.+|++.++.+++.+..++.+... .++|.|++++ T Consensus 32 ~~p~Fls~~Nl~~il~~~a~l~i~AlG~t~vi-i~GgiDLSvgs~~~l~~vv~a~l~~~~~~~~~~~~~~~~~~~~~ail 110 (336) T PRK09478 32 QDPTFLSLLNLSNILTQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPELATMPIALVIL 110 (336) T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH T ss_conf 48887888999999999999999999999999-91787446989999999999999970665332344434554999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 57889889876544445432134577779998898999998555405876788577652112123476434343333100 Q gi|254780896|r 98 VSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFV 177 (351) Q Consensus 98 ~a~~~~a~~g~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (351) ++.++++++|.++|+.+.|.|-+.+ |+|++...+.+.+..-..... +.+.+...+ +.+ ........ ..... T Consensus 111 ~~l~~g~liG~iNG~lv~~~~ip~f-IvTLgt~~i~~Gl~~~~~~~~-~~~~i~~~~-~~~-~~~~~~~~-----~~~~~ 181 (336) T PRK09478 111 IVCAIGAVIGLINGLIIAYLNVTPF-IATLGTMIIVYGINSLYYDFV-GASPISGFD-SGF-STFAQGFV-----ALGSF 181 (336) T ss_pred HHHHHHHHHHHHHHHHHHEECCCHH-HHHHHHHHHHHHHHHHHHCCC-CCEECCCCC-HHH-HHHHHCHH-----HCCCC T ss_conf 9999999999998587750368659-999999999999999986378-860478877-889-99871302-----34787 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC Q ss_conf 14899999999999999999999613059999999642122233420232236799999879999999999986644011 Q gi|254780896|r 178 IYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRIS 257 (351) Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~ 257 (351) ..++..+..+......++.++|||+||+++|+++|||+||.+|||++|+|..+|+++|.+||+||.+++.+.+..+ T Consensus 182 ----~ip~~~~~~~~~~~~~~~~l~~T~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~~y~lsG~~aalaGil~~~r~~s~~ 257 (336) T PRK09478 182 ----RLSYITFYALIAIAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLMIYALSGVFYAFGGMLEAGRIGSAT 257 (336) T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHCHHHEEEEECCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf ----8479999999999999999976854336346459899998828984013308998889999999999999848838 Q ss_pred CCCCCHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 35431589999889887347------422389999999999999999873122100001234442025899999999999 Q gi|254780896|r 258 PDMFKFSENIIVISIVILGG------MTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLV 331 (351) Q Consensus 258 p~~~~~~~~~~~~~~vvlGG------~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilv 331 (351) |+. +-.+.++.++++++|| .||++|+++|++++..+++.+.... ..+.++....+.++++. T Consensus 258 ~~~-G~~~el~aIaAvviGGtsl~GG~Gsv~Gt~~G~l~l~~i~ngl~llg------------v~~~~q~iv~G~ili~a 324 (336) T PRK09478 258 NNL-GFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIG------------VNPYWQYIIKGGIIIFA 324 (336) T ss_pred CCC-CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHHH T ss_conf 265-75347899999997565877996576999999999999999999829------------98899999999999999 Q ss_pred HH Q ss_conf 99 Q gi|254780896|r 332 IL 333 (351) Q Consensus 332 ll 333 (351) +. T Consensus 325 V~ 326 (336) T PRK09478 325 VA 326 (336) T ss_pred HH T ss_conf 99 No 18 >PRK09699 D-allose transporter subunit; Provisional Probab=100.00 E-value=1e-35 Score=234.80 Aligned_cols=294 Identities=15% Similarity=0.140 Sum_probs=217.6 Q ss_pred CCHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH Q ss_conf 71116--6669999999999999999975301472379999999999999999999999984322489999999999999 Q gi|254780896|r 4 FSLRL--NKYDKILCLLAVVYPLLLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSY 81 (351) Q Consensus 4 f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~ 81 (351) |+.+. +||..++.+..+. ........+.+.+.+++.+++.+..+.+++|+|++++. .+|.+|++.++.+++.++.. T Consensus 16 f~~~~f~~~~g~~~vl~~l~-~vf~~~~~~~Fls~~Nl~~il~~~a~l~i~AlG~t~Vi-i~GgiDLSvgs~~~l~~~~~ 93 (325) T PRK09699 16 FNFALFWDKYGTFFILAIIV-AIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAI-LVAGIDLSVGAILALSGMVT 93 (325) T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHH T ss_conf 78999999989999999999-99999778988988999999999999999999999999-93786152999999999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 99720456530365335788988987654444543213457777999889899999855540587678857765211212 Q gi|254780896|r 82 VILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGT 161 (351) Q Consensus 82 ~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~ 161 (351) +.+....+.|.+.+++.++++++++|.++|..+.+.|-+.+ |+|++...+.+.+.... ++| +.+...+ +.+... T Consensus 94 ~~l~~~~~~~~~~a~l~~l~~g~~iG~iNG~lv~~~~ip~f-IvTLgt~~i~~Gl~~~~---t~g-~~i~~~~-~~~~~~ 167 (325) T PRK09699 94 AKLMLAGVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPF-IITLGTNAIFRGITLVI---SDA-NSVYGFS-FDFVNF 167 (325) T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHE---ECC-CCCCCCC-HHHHHH T ss_conf 99998478619999999999999999998597775087759-99999999999888832---189-5125799-899998 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 34764343433331001489999999999999999999961305999999964212223342023223679999987999 Q gi|254780896|r 162 TVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAF 241 (351) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~l 241 (351) .. ....+ .+...+..+......++.++|||+||+++|+++|||+|+..|||++|+|..+|+++|.+ T Consensus 168 ~~---~~~~g-----------iP~~~~i~~~~~~v~~~ll~~T~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~~y~lsG~~ 233 (325) T PRK09699 168 FA---ASVIG-----------IPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVC 233 (325) T ss_pred HC---CCCCC-----------CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCHHEEEEHHHHHHHH T ss_conf 62---32135-----------52999999999999999982181410344657899999884887134044338987899 Q ss_pred HHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 999999998664401135431589999889887347------42238999999999999999987312210000123444 Q gi|254780896|r 242 IGMAGAFFAASRDRISPDMFKFSENIIVISIVILGG------MTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCS 315 (351) Q Consensus 242 AgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG------~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~ 315 (351) ||+||.+++.+.++.+|+. +..+.++.++++++|| .||++|+++|++++..+++.+.... . T Consensus 234 a~lAGil~~~r~~s~~p~~-G~~~~l~aIaAvVlGGtsl~GG~Gsv~Gt~lGal~l~~i~ngl~~~g------------v 300 (325) T PRK09699 234 AGLAGVVSTARLGAAEPLA-GMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQ------------V 300 (325) T ss_pred HHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCC------------C T ss_conf 9999999999857848142-74337889999997360677997153999999999999999999819------------9 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 20258999999999999 Q gi|254780896|r 316 FNMRHTTLMVIALFLVI 332 (351) Q Consensus 316 ~~~~~~~l~~~~lilvl 332 (351) .+.++....+.++++.+ T Consensus 301 ~~~~q~~v~G~iii~aV 317 (325) T PRK09699 301 QTYYQLVVMGGLIIAAV 317 (325) T ss_pred CHHHHHHHHHHHHHHHH T ss_conf 88899999999999999 No 19 >COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism] Probab=99.97 E-value=1.1e-29 Score=198.14 Aligned_cols=307 Identities=16% Similarity=0.151 Sum_probs=213.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH Q ss_conf 11166669999999999999999975--3014723799999999999999999999999843224899999999999999 Q gi|254780896|r 5 SLRLNKYDKILCLLAVVYPLLLFLFL--GATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYV 82 (351) Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~ 82 (351) +-+....+..-.+.++.+..+.|... +.+.+++++.++..|..+-+++|+|+.++. .+|.+|++.|+..++-+-.++ T Consensus 17 ~~~~~n~r~~~ml~al~~I~lfF~~~T~g~~l~p~Nl~NL~~Q~S~i~imA~GMvlVI-v~g~IDLSVGSv~gllGaiaa 95 (394) T COG4214 17 RLKSLNLRVYGMLIALALIMLFFQILTGGVFLSPRNLSNLLRQNSIIGILALGMVLVI-VAGEIDLSVGSVLGLLGAIAA 95 (394) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEE-EECCCCCCHHHHHHHHHHHHH T ss_conf 8874216799999999999999997069768523118999986469999973506788-715303227779999999999 Q ss_pred HHHC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 9720-----45653036533578898898765444454321345777799988989999985554058767885776521 Q gi|254780896|r 83 ILGS-----RYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLY 157 (351) Q Consensus 83 ~l~~-----~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~ 157 (351) ++.. ..|||++++++.+..+++++|...|+..-+.|-+.| |+||+-..+.+.+..- .++| +.+. |.+. T Consensus 96 il~v~~~~~~~gw~~~vtii~~l~~G~liGa~~G~~iay~~vPSF-IVTLaGmLvfrGl~~~---v~~g-~ti~--P~~~ 168 (394) T COG4214 96 ILDVKWGLPWLGWPLPVTIIVTLVLGGLIGAWQGFWIAYLKVPSF-IVTLAGMLVFRGLTLG---VTGG-TTVA--PYPS 168 (394) T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHEE---EECC-CCCC--CCCC T ss_conf 986300465457528999999999999999988889987438559-9876889998333278---5589-4368--9980 Q ss_pred CCCCCCCCCCCC---------------------------CCCCCCCHHHHHH---------------------HHHHHHH Q ss_conf 121234764343---------------------------4333310014899---------------------9999999 Q gi|254780896|r 158 FLGTTVRSLIRF---------------------------FRFPSSFVIYEIF---------------------MYYVLLG 189 (351) Q Consensus 158 ~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~---------------------~~~~~~~ 189 (351) .+....+...+. ++.+..+...... ..+..+. T Consensus 169 ~f~~ig~g~ip~~~~~~~~~v~~~~~v~~~~r~R~~r~~~gl~~~p~~~~~~k~~~~~~~il~~v~~ln~yrGvp~~vlv 248 (394) T COG4214 169 TFSLIGQGFLPAILGWILGLVALAAIVFAGLRGRRRRIRHGLEVPPFWAFVLKLLVIAAIILGLVYVLNSYRGVPNPVLV 248 (394) T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 78886310256368889999999999999998888998629977965899999999999999999998412698689999 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHH Q ss_conf 99999999999613059999999642122233420232236799999879999999999986644011354315899998 Q gi|254780896|r 190 MCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIV 269 (351) Q Consensus 190 ~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~ 269 (351) ..++.....+..+||++||+++|++.|||+||.+|||++|++..+|++.|.++++||...+.+.+..+|.. +.....++ T Consensus 249 ~~vl~~~~~fvt~rT~fGR~VyAiGGN~eAA~LSGInv~r~t~~vF~~mGvl~AiAgli~taRL~aatp~A-G~g~ELda 327 (394) T COG4214 249 LLVLLIVFTFVTTRTVFGRRVYAIGGNPEAARLSGINVERVTLLVFVIMGVLAAIAGLILTARLNAATPSA-GTGFELDA 327 (394) T ss_pred HHHHHHHHHHHHHHCEEEEEEEEECCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHH T ss_conf 99999999998631122048987269878898648750104689999978999999999999860578677-76415778 Q ss_pred HHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 89887347------4223899999999999999998731221000012344420258999999999999 Q gi|254780896|r 270 ISIVILGG------MTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVI 332 (351) Q Consensus 270 ~~~vvlGG------~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvl 332 (351) ++++++|| .|++.|+++|++++..+++... .......+|+.+-+.++++-. T Consensus 328 IAA~fIGGtSlaGGvGtv~GAviGalIM~sl~nGMs------------llgv~~~~Q~iVkG~VLl~AV 384 (394) T COG4214 328 IAACFIGGTSLAGGVGTVAGAVIGALIMGSLNNGMS------------LLGVDTDWQQIVKGAVLLLAV 384 (394) T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCE------------EECCCCCHHHHHHHHHHHHHH T ss_conf 899874663124774269999999999998845857------------845895399999989999888 No 20 >cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Probab=99.97 E-value=1.9e-28 Score=190.59 Aligned_cols=205 Identities=20% Similarity=0.267 Sum_probs=157.7 Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999843224899999999999999972045653036533578898898----76544445432134577 Q gi|254780896|r 48 IYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGAC----GMIMGLPSLKFRGDYLA 123 (351) Q Consensus 48 i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~----g~l~g~~~~rl~g~~~~ 123 (351) ...+.++|..+.+ .+|++|+|+.+++.+|||++++.....++|.|.+.+++.+++++. |.+.++...|++.+. . T Consensus 3 Plll~alg~~~~~-r~G~~Nig~eG~~~~GA~~aa~~~~~~~~~~~~~~~l~~l~a~~~G~~~g~i~~~l~~~~~~~~-~ 80 (234) T cd06580 3 PLILAALGVAISF-RAGVFNIGLEGQMLLGAFAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNE-V 80 (234) T ss_pred HHHHHHHHHHHHH-HHCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-H T ss_conf 7999999999999-9488206098899999999999999635651589999999999999999999999999968888-9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 77999889899999855540587678857765211212347643434333310014899999999999999999999613 Q gi|254780896|r 124 IATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRR 203 (351) Q Consensus 124 i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~r 203 (351) +.|++...+...... +.......++...+++++| T Consensus 81 i~tl~ln~~~~~~~~----------------------------------------------~l~~i~~~~~~~~~~~l~~ 114 (234) T cd06580 81 ISGLMLNYIALGLTS----------------------------------------------YLLLLALLLVILVWLLLYR 114 (234) T ss_pred HHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999----------------------------------------------9999999999999999998 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HEECCCCCCHHHHHHHHHHHHHCCCCCHH Q ss_conf 05999999964212223342023223679999987999999999998664-40113543158999988988734742238 Q gi|254780896|r 204 TAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASR-DRISPDMFKFSENIIVISIVILGGMTSLS 282 (351) Q Consensus 204 T~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~-~~v~p~~~~~~~~~~~~~~vvlGG~gs~~ 282 (351) ||+||++||++|||++||++|+|++|+|..+|.+|+++||++|+++.... +..+|+ ++..+.++.++++++|+ +|+. T Consensus 115 T~~G~~lravG~n~~aA~~~Gi~v~~~~~~a~~isg~laGlaG~~~~~~~~~~~~~~-~~~g~g~~aia~~ilg~-~~p~ 192 (234) T cd06580 115 TRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEG-MSAGYGFIAIAVALLGR-WNPL 192 (234) T ss_pred CHHHHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHC-CCHH T ss_conf 878745003318899998879888899999999999999999999998650257767-76661499999999979-9889 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999998731 Q gi|254780896|r 283 KIAKATAILIGVVELCCGMN 302 (351) Q Consensus 283 Ga~lGa~~l~~~~~~~~~~~ 302 (351) |++.++.+...+++.....+ T Consensus 193 g~~~~al~fg~l~~g~~~lq 212 (234) T cd06580 193 GILLAALLFGALEAGGIALQ 212 (234) T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999997 No 21 >COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only] Probab=99.95 E-value=5.3e-26 Score=175.68 Aligned_cols=276 Identities=17% Similarity=0.176 Sum_probs=181.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999984322489999999999999997204565303653357889889876544445432134 Q gi|254780896|r 41 SMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGD 120 (351) Q Consensus 41 ~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~ 120 (351) +.....-...+.|+|= +....+|++|+|..+.|.+||++.+..... ..++|++++.+.++++++++++++.+.++|.+ T Consensus 13 ~~l~~atPLllaaLG~-l~sERsGVlNIglEG~M~~gAf~~~~~~~~-t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~n 90 (304) T COG1079 13 SILRAATPLLLAALGG-LFSERSGVLNIGLEGIMLLGAFSGALFAYG-TGSPWLGLLAAALVGALFGLLHAFLTIKLRAN 90 (304) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHCEEEECHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999988-898872214541314899999999999981-46689999999999999999999999761456 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 57777999889899999855540587678857765211212347643434333310014899999999999999999999 Q gi|254780896|r 121 YLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILW 200 (351) Q Consensus 121 ~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (351) +. +.-++....-..+..-......+..+.. .++...... +..+..+ +.. ..+.+.......++...+|+ T Consensus 91 qi-isG~alnl~a~Glt~fl~~~~~~~~~~~-~~~~~~p~l---~~ip~~g-~~~-----~~~~~~~y~ai~lv~~~~~~ 159 (304) T COG1079 91 QI-ISGLALNLLASGLTAFLGQSIFGQPGTT-FQPIDIPGL---SDIPVIG-PAL-----FGQSPLVYLAILLVALVWYV 159 (304) T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCC---CCCCCCC-CHH-----CCCCHHHHHHHHHHHHHHHH T ss_conf 12-2489999999899999999986368887-776677632---3476444-110-----25579999999999999999 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 61305999999964212223342023223679999987999999999998664401135431589999889887347422 Q gi|254780896|r 201 LRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTS 280 (351) Q Consensus 201 l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~gs 280 (351) +.|||+|+++||++|||++++.+|+|+.|+|..+..+|+++||++|+.++..+....-+.+.-...+.++++++.|. -+ T Consensus 160 L~rTr~GL~lravGE~P~aad~~Gi~V~r~R~~av~~sG~laGlaGa~Lsl~~~~~f~~~m~aGrGfIAlA~~ifa~-W~ 238 (304) T COG1079 160 LYRTRFGLRLRAVGENPAAADAMGINVYRYRYLAVLVSGALAGLAGAYLSLAYSGQFVEGMTAGRGFIALAAVIFAR-WR 238 (304) T ss_pred HHCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHC-CC T ss_conf 73052466999826982678867987567889999999999875352135550456444666772199999999947-87 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 38999999999999999987312210000123444202589999999999999858 Q gi|254780896|r 281 LSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRS 336 (351) Q Consensus 281 ~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP 336 (351) +++++.++.+.+..+..-...+. .+........++.-+...+++...++- T Consensus 239 Pl~~~~~allFg~~~~l~~~~q~------~~~~vp~~ll~~iPYi~tiivL~~~~~ 288 (304) T COG1079 239 PLGALVAALLFGFFEALAIQLQA------LGILVPSQLLQALPYIATLIVLALFSG 288 (304) T ss_pred HHHHHHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 39999999999999999988612------466773899999869999999999844 No 22 >COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=99.91 E-value=1.5e-22 Score=154.76 Aligned_cols=260 Identities=17% Similarity=0.175 Sum_probs=175.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 47237999999999999999999999998432248999999999999999720456-53036533578898898765444 Q gi|254780896|r 34 KSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYG-LSIWLLIPVSAMISGACGMIMGL 112 (351) Q Consensus 34 ~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g-~~~~~ai~~a~~~~a~~g~l~g~ 112 (351) .+..+....+.....+.+.++|+.+-+ .+|+.|+|..+.+..|+..+.+.....+ .|.|+.+|++++.+++.|.+.+. T Consensus 53 ~~~~~i~~~l~~~~pliltgL~~ava~-raGlfNIG~EGQ~~~Gai~a~~~~~~~~~~p~~l~~p~a~l~g~~~G~~wa~ 131 (356) T COG4603 53 GSPWSIGELLVKAAPLILTGLGVAVAF-RAGLFNIGAEGQFYAGAIAAALVALLFPDLPSWLALPLALLAGAAGGGLWAL 131 (356) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 786789999999999999999999999-9378226717799999999999999757777479999999999999999999 Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 454321---34577779998898999998555405876788577652112123476434343333100148999999999 Q gi|254780896|r 113 PSLKFR---GDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLG 189 (351) Q Consensus 113 ~~~rl~---g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (351) ..--+| +..-.+.|+-+..+...+..... .+ ....|... ......+..+....+....... ...+.++. T Consensus 132 ipg~Lka~f~~nEVIttiMlNyIa~~l~~~lV---~~---~~~~p~~~-~~~~T~~i~~~a~lp~~~~~~~-~~~~g~li 203 (356) T COG4603 132 IPGLLKARFGVNEVITTIMLNYIAVYLLNYLV---EG---PLRDPAGT-NFPQTRPIPDAARLPSLFLASG-RLHWGFLL 203 (356) T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---CC---CCCCCCCC-CCCCCCCCCHHHCCCCCCCCCC-HHHHHHHH T ss_conf 99999999186299999999999999999998---07---24588767-8866825751113775542111-28999999 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHEECCCCCCHHHHHH Q ss_conf 999999999996130599999996421222334202322367999998799999999999866-4401135431589999 Q gi|254780896|r 190 MCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAAS-RDRISPDMFKFSENII 268 (351) Q Consensus 190 ~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~-~~~v~p~~~~~~~~~~ 268 (351) .+..+...+..++||++|.++|+++.||++||+.|+|++|+.+.++.+||++||++|++...- .+...+ +....+.++ T Consensus 204 al~~av~~~~ll~kT~~G~~lr~~G~sp~Aa~yaGi~~~r~i~~sm~iSGalAGLaG~~ev~G~~~~~~~-~~~~G~Gf~ 282 (356) T COG4603 204 ALAAAVLVWFLLKKTVFGYELRVVGLSPRAARYAGISVKRTIFLSMLISGALAGLAGAVEVLGAFGRLRP-SISPGYGFD 282 (356) T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC-CCCCCCCHH T ss_conf 9999999999999814775888724880389987987468999999999999999889998152010003-667776728 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889887347422389999999999999999873122 Q gi|254780896|r 269 VISIVILGGMTSLSKIAKATAILIGVVELCCGMNFY 304 (351) Q Consensus 269 ~~~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~ 304 (351) .++++.+|+ .|+.|.+..++++..+.+.....+.. T Consensus 283 gI~Vallg~-~~P~giv~asll~~~l~~G~~~~~~~ 317 (356) T COG4603 283 GIAVALLGR-NNPLGIVFASLLFGFLYIGAEAAQLN 317 (356) T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999806-88378999999999999868987640 No 23 >COG4158 Predicted ABC-type sugar transport system, permease component [General function prediction only] Probab=99.89 E-value=1.3e-24 Score=167.18 Aligned_cols=248 Identities=17% Similarity=0.142 Sum_probs=190.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 97530147237999999999999999999999998432248999999999999999720456530365335788988987 Q gi|254780896|r 28 LFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACG 107 (351) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g 107 (351) ...+.+.++.+++++..|..+-.+.|-|++++. .+|-+|++.|..++..|......+...+|.. +++|.+++.+...| T Consensus 41 F~ap~flte~Nl~~i~~qasinivLAaGmTFvI-ltGGIDLSvGsIlg~tAvia~~~slmp~~a~-l~~P~AlLaGl~~G 118 (329) T COG4158 41 FIAPNFLTESNLLNITRQASINIVLAAGMTFVI-LTGGIDLSVGSILGTTAVIAMVVSLMPGWAA-LSIPAALLAGLLLG 118 (329) T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE-EECCCCCCHHHHHHHHHHHHHHHHCCCCHHH-CCCHHHHHHHHHHH T ss_conf 538521686788898998414568876977999-9477040077787799999999860775010-38519999887777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 65444454321345777799988989999985554058767885776521121234764343433331001489999999 Q gi|254780896|r 108 MIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVL 187 (351) Q Consensus 108 ~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (351) .++|+.+-|.+-+.| |+|++.--.+|....-.. +|...+. ....|.+-. ..+.....|.. T Consensus 119 ~~NGlLva~~~lPPF-IvTLG~~ta~RGaA~Lla------~gTTv~n-----------sn~~F~~iG--Ng~l~gvPwLV 178 (329) T COG4158 119 LFNGLLVAYAGLPPF-IVTLGTYTALRGAAYLLA------DGTTVIN-----------SNINFEWIG--NGYLGGVPWLV 178 (329) T ss_pred HHHHHHHHHHCCCCE-EEECCHHHHHHHHHHHHC------CCCEEEC-----------CCCCEEEEC--CCEECCCCHHH T ss_conf 652567866079986-998103787744574014------9837861-----------687515653--64224885378 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH Q ss_conf 99999999999996130599999996421222334202322367999998799999999999866440113543158999 Q gi|254780896|r 188 LGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENI 267 (351) Q Consensus 188 ~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~ 267 (351) +..+.++...++.++||++|.+++|++.|-++||..||++..+.+..|..|+.++|++|++++.+....+.+. +..+.. T Consensus 179 vIa~~vv~~~w~iL~rT~lG~hiYAvGgN~qAARltGIkv~~vllfvY~~SgllsGLGGamsAsRlysang~l-G~~yeL 257 (329) T COG4158 179 VIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGAMSASRLYSANGNL-GMGYEL 257 (329) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCC-CCCEEH T ss_conf 9999999999998823022346777255277787518723577423777888873143122477775303567-986321 Q ss_pred HHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 988988734------7422389999999999999999 Q gi|254780896|r 268 IVISIVILG------GMTSLSKIAKATAILIGVVELC 298 (351) Q Consensus 268 ~~~~~vvlG------G~gs~~Ga~lGa~~l~~~~~~~ 298 (351) +.+++|++| |.|+++|.+.|++++..+++.+ T Consensus 258 DaiAAVilGGtSfvGG~GtI~GTl~GaLiIA~l~nGm 294 (329) T COG4158 258 DAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGM 294 (329) T ss_pred HHHHHEEECCCCEECCCCEEEEEHHHHHHHHHHCCCE T ss_conf 1324212257423356331331001242430011781 No 24 >COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=99.88 E-value=1.7e-20 Score=142.20 Aligned_cols=222 Identities=21% Similarity=0.247 Sum_probs=160.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999843224899999999999999972045653036533578898898765444454321 Q gi|254780896|r 39 IDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFR 118 (351) Q Consensus 39 ~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~ 118 (351) ......|.++|+.+++|.-+.+......|+...+-|.+||-.++.+-. .|++||.+..+++..+++.|++.++...|.| T Consensus 6 l~~aleqgLi~~~v~LGvyisFRiLnFPDLTvdGsfpLGaAv~a~li~-~G~nP~~at~~a~~AG~~aG~it~~l~~k~k 84 (293) T COG4120 6 LIGALEQGLIFAFVALGVYISFRILNFPDLTVDGSFPLGAAVAATLIA-AGVNPFLATLVAMVAGAAAGMITGLLNVKFK 84 (293) T ss_pred HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999989999999978613554068875315751050999999998-1687799999999987898999999997222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 34577779998898999998555405876788577652112123476434343333100148999999999999999999 Q gi|254780896|r 119 GDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASII 198 (351) Q Consensus 119 g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (351) -+.+ -.+......+.+... .+.+.++.+..+.+.-.. ..+............+....+..+.++. T Consensus 85 I~~L-----LAgIL~M~alySVNL------rIMgrpNl~ll~~~ti~~----~l~~~~~~~~~~~pli~~vlvii~~~~v 149 (293) T COG4120 85 ILTL-----LAGILTMIALYSVNL------RIMGRPNLPLLGEDTIFT----PLPFDGLLDYLLRPLILVVLVIIAKLLV 149 (293) T ss_pred HHHH-----HHHHHHHHHHHHHHH------HHHCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 8779-----999999999998889------985589965368986335----3554566225778799999999999999 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCC Q ss_conf 9961305999999964212223342023223679999987999999999998664401135431589999889887347 Q gi|254780896|r 199 LWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGG 277 (351) Q Consensus 199 ~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG 277 (351) +++-+|+.|.++||.++||+.+++.|+|++++++...++|.++.+++|+++++++++.+-++ +...-+.-++.+++|- T Consensus 150 ~~fl~t~~GlalrAtG~N~~Ma~a~Gi~t~~~~~~Gl~lSNalvAl~GAL~AQ~~GfADVsm-GiG~iVvGLAavIIGe 227 (293) T COG4120 150 IRFLKTDLGLALRATGDNPDMARAQGINTERYTILGLALSNALVALAGALFAQTNGFADVSM-GIGTIVVGLAAVIIGE 227 (293) T ss_pred HHHHHCCCCCEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC-CCCHHHHHHHHHHHHH T ss_conf 99973453622101279877999839872568999899988899985668887436530025-7442454567999779 No 25 >COG4211 MglC ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism] Probab=99.66 E-value=5.9e-18 Score=126.76 Aligned_cols=251 Identities=16% Similarity=0.165 Sum_probs=168.5 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC-----------CCCCHHH Q ss_conf 99975301472379999999999999999999999984322489999999999999997204-----------5653036 Q gi|254780896|r 26 LFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSR-----------YGLSIWL 94 (351) Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~-----------~g~~~~~ 94 (351) .....|.+.+.+++.++++|...-.+.|+|..=+. .+.--|++.|-..++++-.++.+.+. ...|... T Consensus 29 iIv~~PtfLsl~N~~nILtQSSVR~iiAlGVAGli-vtqGTDLSaGRqVglaaVis~tlLqsm~Nin~~FPdl~~vpi~v 107 (336) T COG4211 29 IIVQDPTFLSLRNLSNILTQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAVVSATLLQSMDNINKVFPDLGTVPIAV 107 (336) T ss_pred HHCCCCCEEEHHHHHHHHHHHHEEEEEEECCCEEE-EECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEE T ss_conf 73238523540127767532121313441200278-84366642432110888869988513211555388988764020 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 53357889889876544445432134577779998898999998555405876788577652112123476434343333 Q gi|254780896|r 95 LIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPS 174 (351) Q Consensus 95 ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 174 (351) .+...+++++.+|.+.|+.+-|++-..+ |.|++...++..+ .++..+..|-+ +...+....++....+.... T Consensus 108 ~il~v~~ig~vi~l~nG~~~A~Lnv~PF-IaTlgTmiIvYGi----nsLyyd~~G~s---Pi~gfd~~~s~faqG~~~~G 179 (336) T COG4211 108 VILIVCAIGAVIGLINGLIIAYLNVTPF-IATLGTMIIVYGI----NSLYYDFVGAS---PISGFDEGFSTFAQGFVALG 179 (336) T ss_pred HHHHHHHHHHHHHHHHEEEEEEEECCCH-HHHHHHEEEEEEC----CCEEECCCCCC---CCCCCCHHHHHHHCCEEEEE T ss_conf 2356889889988731027889844606-7620017888602----11144365887---55555744676738279975 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10014899999999999999999999613059999999642122233420232236799999879999999999986644 Q gi|254780896|r 175 SFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRD 254 (351) Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~ 254 (351) +. ..+ ++..-........|..-+|||+|+.+.|++.|||+|+.+|+|+.+..+..|++++.+=+.+|.+.+-+.+ T Consensus 180 s~-~~~----yi~iyA~IA~~~~W~lWNKT~fGKNifAvGGNpEAAkVSGvnV~~~l~~iyalsgvfYaFGg~lEagrig 254 (336) T COG4211 180 SF-RLS----YITIYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVFLNLLMIYALSGVFYAFGGMLEAGRIG 254 (336) T ss_pred EE-ECC----EEEHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 56-502----3629999999999997521201650487559835602046023799999999998998853677516445 Q ss_pred EECCCCCCHHHHHHHHHHHHHCCC------CCHHHHHHHHHHH Q ss_conf 011354315899998898873474------2238999999999 Q gi|254780896|r 255 RISPDMFKFSENIIVISIVILGGM------TSLSKIAKATAIL 291 (351) Q Consensus 255 ~v~p~~~~~~~~~~~~~~vvlGG~------gs~~Ga~lGa~~l 291 (351) +.+.+. ++.+..++++++|+||. |++.|++-|..+. T Consensus 255 sAtnnl-GfmYElDAIAaCVvGGvSF~GGvG~v~GvvtGViIf 296 (336) T COG4211 255 SATNNL-GFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIF 296 (336) T ss_pred CCCCCC-CCEEEHHHHHHHEECCEEECCCCCEEEEEEEEEEEE T ss_conf 543675-541323354655036557627642488899999999 No 26 >cd06550 TM_ABC_iron-siderophores_like Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal Probab=97.29 E-value=0.011 Score=34.01 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999642122233420232236799999879999999 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMA 245 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgia 245 (351) ..|++....-|||.|+.+|+|+++.|.....+.+...+.+ T Consensus 148 ~~~~l~~l~~~~~~A~~lGi~v~~~~~~~l~l~~~~~~~~ 187 (261) T cd06550 148 LSRKLNLLTFDEDLAKSLGINVNLLRLLLLLLVALLVVAA 187 (261) T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999999978989988769969999999999999999999 No 27 >PRK10440 iron-enterobactin transporter permease; Provisional Probab=96.88 E-value=0.027 Score=31.60 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=64.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE---ECCCCCCHHHHHHHHHHHHHCCC-CC- Q ss_conf 99999996421222334202322367999998799999999999866440---11354315899998898873474-22- Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDR---ISPDMFKFSENIIVISIVILGGM-TS- 280 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~---v~p~~~~~~~~~~~~~~vvlGG~-gs- 280 (351) ..|++.+..-+||.|+.+|+|++|.|.....+++.+++.+=+. +-..++ +.|+. +=-..|.. .+ T Consensus 210 ~~~~L~~l~lGd~~A~sLGv~v~~~r~~~l~~a~ll~a~~Va~-~G~IgFVGLi~PHi----------aR~l~g~~~~~l 278 (330) T PRK10440 210 LVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLTAAATAL-AGPISFIALVAPHI----------ARRLSGTARWGL 278 (330) T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHH----------HHHHHCCCCCHH T ss_conf 9887267633828888759879999999999999999999997-04798999759999----------999817786418 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 38999999999999999987312210000123444202589999999999999858 Q gi|254780896|r 281 LSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRS 336 (351) Q Consensus 281 ~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP 336 (351) +.-+..|+.++...+...+....+. +........+++.-.++.++.|- T Consensus 279 ~~sal~Ga~lll~aD~laR~l~~p~--------eiPvGivtaliGaP~fi~Ll~r~ 326 (330) T PRK10440 279 TQAALCGALLLLAADLCAQQLFMPY--------QLPVGVVTVSLGGIYLIVLLIQE 326 (330) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999997645665--------62099999999899999999622 No 28 >PRK09535 btuC corrinoid ABC transporter permease; Reviewed Probab=96.44 E-value=0.055 Score=29.71 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=61.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE---CCCCCCHHHHHHHHHHHHHCCCC--C Q ss_conf 999999964212223342023223679999987999999999998664401---13543158999988988734742--2 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRI---SPDMFKFSENIIVISIVILGGMT--S 280 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v---~p~~~~~~~~~~~~~~vvlGG~g--s 280 (351) ..|.+.+..-.||.|+.+|+|++|.|.....+++.+++.+=.. +-..+++ .|+. +=-..|.-. . T Consensus 246 ~~r~L~~L~lGde~A~sLGvnv~~~r~~~l~la~llta~~Va~-~G~IgFVGLi~PHi----------aR~l~g~~~r~l 314 (366) T PRK09535 246 YARDLNVLLLGEEDAHTLGIEVERTKRILLAAASVVTAAAVAV-AGVIGFVGLIVPHA----------MRLLVGPDHRIL 314 (366) T ss_pred HHHHCCCHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHH----------HHHHHCCCCCHH T ss_conf 9996420213959998789988999999999999999999993-34164698608999----------999928884349 Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 3-899999999999999998731221000012344420258999999999999985 Q gi|254780896|r 281 L-SKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMR 335 (351) Q Consensus 281 ~-~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~r 335 (351) + .-+++|+.++...+...+. .+. +........+++.-.++.++.| T Consensus 315 lp~saL~Ga~lll~aD~laR~-~p~---------ElPvGivtalIG~P~fl~LL~r 360 (366) T PRK09535 315 LPTSALAGASFLVATDTVARS-GAT---------EPPVGIITAALGAPFFLYLLRK 360 (366) T ss_pred HHHHHHHHHHHHHHHHHHHCC-CCC---------CCCHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999997564-864---------4549999999989999999984 No 29 >PRK10577 iron-hydroxamate transporter permease subunit; Provisional Probab=95.61 E-value=0.13 Score=27.36 Aligned_cols=115 Identities=16% Similarity=0.064 Sum_probs=59.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCC----H Q ss_conf 999999964212223342023223679999987999999999998664401135431589999889887347422----3 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTS----L 281 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~gs----~ 281 (351) ..|.+....-+||.|+.+|+|++|.|.....++..+++.+=.. +-..+++. +. ..-++ =.++|... + T Consensus 213 ~~r~L~~L~LGd~~A~sLGv~v~~~r~~~l~~a~llta~aVa~-~G~IgFVG-----Li--aPhia-R~l~~~~~~~~lp 283 (666) T PRK10577 213 LIRPLTLLGLGDDVARSLGLAVSLARLAALALAIFLSAVVVSA-VGPIGFIG-----LA--APNLA-RLLGARRLRARLL 283 (666) T ss_pred HHHHCCCHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHH-----HH--HHHHH-HHHHCCCCCHHHH T ss_conf 9875782303999997779978999999999999999999994-13276888-----60--99999-9983778540799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 8999999999999999987312210000123444202589999999999999858 Q gi|254780896|r 282 SKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRS 336 (351) Q Consensus 282 ~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP 336 (351) .-++.|+.++...+...+....... ....-...-+++.-.++.++.|- T Consensus 284 ~s~l~Ga~lll~aD~~~r~l~~~~~-------elP~G~vTaliGaP~ll~Ll~R~ 331 (666) T PRK10577 284 LSPLIGALLLLLTDQLVLLLARVGA-------ELPTGAVTALIGAPLLLWLLPRL 331 (666) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999986035753-------04079999998789999999973 No 30 >pfam01032 FecCD FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system. Probab=95.50 E-value=0.15 Score=27.10 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=53.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCC--CCH-H Q ss_conf 9999999642122233420232236799999879999999999986644011354315899998898873474--223-8 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGM--TSL-S 282 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~--gs~-~ 282 (351) .-+++....-+||.|+.+|+|++|.|.....+++.+++.+=.+ + .|-.| ...-..-++--..|.. -.+ . T Consensus 196 ~~~~l~~l~lG~~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~-~------G~I~F-vGLi~Phiar~l~g~~~~~~l~~ 267 (312) T pfam01032 196 LARKLNLLALGDDVAKSLGVNVNRVRLLLLLLAALLTAAAVAL-V------GPIGF-VGLIVPHIARLLVGANHRRLLPL 267 (312) T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-C------CHHHH-HHHHHHHHHHHHCCCCCCCHHHH T ss_conf 9876058874939999769989999999999999999999980-1------69998-99749999999808886418999 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999998731 Q gi|254780896|r 283 KIAKATAILIGVVELCCGMN 302 (351) Q Consensus 283 Ga~lGa~~l~~~~~~~~~~~ 302 (351) -++.|+.++...+...+... T Consensus 268 s~l~Ga~lll~aD~i~r~~~ 287 (312) T pfam01032 268 SALIGALLLLLADLLARTLL 287 (312) T ss_pred HHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999997716 No 31 >PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed Probab=95.28 E-value=0.17 Score=26.67 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=68.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCC--H-H Q ss_conf 999999964212223342023223679999987999999999998664401135431589999889887347422--3-8 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTS--L-S 282 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~gs--~-~ 282 (351) ..|++....-+||.|+.+|+|++|.|.....+++.+++.+=.+ +.|-.| ...-..-++--..|...+ + . T Consensus 200 ~~~~l~~l~lGe~~A~sLGvnv~~~r~~~l~~~~~l~a~~va~-------vG~I~F-VGLi~PhiaR~l~g~~~~~~lp~ 271 (318) T PRK09777 200 FCRDLDLLALGDARATTLGVSVPHTRFWALLLAVALTATGVAA-------CGPISF-IGLVVPHLMRSLVGGRHRRLLPV 271 (318) T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-------CCCHHH-HHHHHHHHHHHHHCCCCCHHHHH T ss_conf 9997143636939999779979999999999999999999980-------250524-98619999999808885418999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999999999873122100001234442025899999999999998589 Q gi|254780896|r 283 KIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSH 337 (351) Q Consensus 283 Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~ 337 (351) .+..|+.++...+...+....+.. ........+++.-..+.++.|-| T Consensus 272 s~l~Ga~lll~aD~l~R~l~~p~e--------lPvGivtaliG~P~fi~ll~R~r 318 (318) T PRK09777 272 SALTGALLLLLADLLARIIHPPLE--------LPAGVLTAIIGAPWFVWLLVRMR 318 (318) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC--------CHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999999999966066652--------11999999998999999740379 No 32 >PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional Probab=94.97 E-value=0.21 Score=26.12 Aligned_cols=89 Identities=10% Similarity=0.103 Sum_probs=54.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCC--CCH-H Q ss_conf 9999999642122233420232236799999879999999999986644011354315899998898873474--223-8 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGM--TSL-S 282 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~--gs~-~ 282 (351) ..|.+.+..-.||.|+.+|+|++|+|.....+++.+++.+=.. +.|-.| ...-..-++=-..|.- ..+ . T Consensus 205 ~~~~L~~l~lGd~~A~sLGv~v~~~r~~~l~~~~~l~a~~va~-------~G~I~F-VGLivPhiaR~l~g~~~~~~lp~ 276 (323) T PRK11228 205 LANQLNLLNLSDSTAHTLGVNLTRLRLVVNMLVLLLVGACVSV-------AGPVAF-IGLLVPHLARFWAGFDQRNVLPV 276 (323) T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-------CCCHHH-HHHHHHHHHHHHHCCCCCCHHHH T ss_conf 9987056745959998789979999999999999999999966-------771622-98509999999818887517999 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999998731 Q gi|254780896|r 283 KIAKATAILIGVVELCCGMN 302 (351) Q Consensus 283 Ga~lGa~~l~~~~~~~~~~~ 302 (351) -++.|+.++...+...+... T Consensus 277 sal~Ga~lll~aD~iaR~l~ 296 (323) T PRK11228 277 SMLLGATLMLLADLLARALA 296 (323) T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999986615 No 33 >PRK03784 vtamin B12-transporter permease; Provisional Probab=94.89 E-value=0.22 Score=25.99 Aligned_cols=114 Identities=15% Similarity=0.051 Sum_probs=67.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCC---HH- Q ss_conf 99999964212223342023223679999987999999999998664401135431589999889887347422---38- Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTS---LS- 282 (351) Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~gs---~~- 282 (351) .|++....-+||.|+.+|+|++|.|.....+++.+++.+=.. +-..+++ ++. ..-++= .+.|..+ ++ T Consensus 210 ~r~L~~L~LGd~~A~~LGv~v~~~r~~~l~~a~ll~a~~Va~-~G~IgFV-----GLi--~PhiaR-~l~g~~~~~llp~ 280 (330) T PRK03784 210 GRPLNMLALGETSARQLGLPLWFWRNLLVLATGWLVGVSVAL-AGAIGFI-----GLV--IPHILR-LCGLTDHRVLLPG 280 (330) T ss_pred HHHCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-CCHHHHH-----HHH--HHHHHH-HHCCCCCCHHHHH T ss_conf 865604217948898789989999999999999999999993-1158739-----962--999999-9807775059999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999999999873122100001234442025899999999999998589 Q gi|254780896|r 283 KIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSH 337 (351) Q Consensus 283 Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~ 337 (351) .++.|+.++...+...+....+. +........+++.-.++.++.|.| T Consensus 281 sal~Ga~lll~aD~~~R~l~~p~--------elPvGivtaliG~P~fi~Ll~r~r 327 (330) T PRK03784 281 CALAGASLLLLADIVARLALASA--------ELPIGVVTATLGAPVFIWLLLRSH 327 (330) T ss_pred HHHHHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999985625666--------520999999998999999898445 No 34 >PRK10441 iron-enterobactin transporter membrane protein; Provisional Probab=94.79 E-value=0.24 Score=25.82 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=63.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCC--CHH- Q ss_conf 99999996421222334202322367999998799999999999866440113543158999988988734742--238- Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMT--SLS- 282 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~g--s~~- 282 (351) ..|++.+..-.||.|+.+|+|++|.|.....+++.+++.+=.. +-..+++ + .-..-++=-..|.-. .++ T Consensus 213 ~~~~L~~l~lGd~~A~sLGv~v~~~r~~~l~~a~ll~a~~Va~-~G~IgFV-----G--Li~PHiaR~l~g~~~~~~lp~ 284 (335) T PRK10441 213 LSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAV-VGPIAFI-----G--LMMPHMARWLVGADHRWSLPV 284 (335) T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-CCHHHHH-----H--HHHHHHHHHHHCCCCCCHHHH T ss_conf 9999999977969998689969999999999999999999993-7538679-----9--629999999818885408999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999987312210000123444202589999999999999858 Q gi|254780896|r 283 KIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRS 336 (351) Q Consensus 283 Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP 336 (351) -++.|+.++...+...+...+.+ ........+++.-.++.++.|. T Consensus 285 sal~Ga~lll~aD~~~R~~~p~e---------iPvGiitaliG~P~fl~Ll~r~ 329 (335) T PRK10441 285 TLLATPALLLFADIIGRLLVPGE---------LRVSVVSAFIGAPVLIFLVRRK 329 (335) T ss_pred HHHHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999998756656---------1099999999899999999826 No 35 >pfam00950 ABC-3 ABC 3 transport family. Probab=94.13 E-value=0.34 Score=24.93 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999642122233420232236799999879999 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFI 242 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lA 242 (351) +-|++..+.-|||-|+..|+|+++++..-..+-+... T Consensus 144 ~~r~l~~~~fD~~~A~~~Gi~~~~~~~~~~~lial~v 180 (258) T pfam00950 144 FWKELLLITFDPDHAKVIGLPVQFLYLLLLILLALTI 180 (258) T ss_pred HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 9999999960899999828861378999999999999 No 36 >COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism] Probab=94.03 E-value=0.35 Score=24.80 Aligned_cols=36 Identities=3% Similarity=-0.094 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999964212223342023223679999987999 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAF 241 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~l 241 (351) +-|.+....-|||-|+..|+|+++++..-..+-+.- T Consensus 153 f~r~ll~~~fD~~~A~~~Gl~v~~~~~l~~~lisl~ 188 (274) T COG1108 153 FYRELLLLTFDPEFARVLGLNVRLLHYLLLVLLALT 188 (274) T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 999999962689999874985889999999999999 No 37 >COG0609 FepD ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism] Probab=91.01 E-value=0.9 Score=22.33 Aligned_cols=114 Identities=13% Similarity=0.022 Sum_probs=65.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCC--CHH-H Q ss_conf 9999996421222334202322367999998799999999999866440113543158999988988734742--238-9 Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMT--SLS-K 283 (351) Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~g--s~~-G 283 (351) .+.+.+..-|||.|+.+|+|++|.|......++.++|.+=.+ +-..+++ ..-..-++-.+.|.-- -++ . T Consensus 213 ~~~l~il~lgd~~A~~LGi~v~~~r~~~~i~a~llt~~~Vs~-~G~I~FV-------GLi~PHiaR~lvg~~~r~lip~s 284 (334) T COG0609 213 SRKLNILSLGDELAKSLGINVNRLRLLLLLLASLLTAAAVSL-VGPIGFV-------GLIAPHIARLLVGNDHRYLLPLS 284 (334) T ss_pred HHHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HCHHHHH-------HHHHHHHHHHHHCCCCCEEHHHH T ss_conf 774767544989998779878999999999999999999998-1216888-------86389999998287642217878 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999987312210000123444202589999999999999858 Q gi|254780896|r 284 IAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRS 336 (351) Q Consensus 284 a~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP 336 (351) ++.|+.++.......+....+ ..........+++.-..+.++.|- T Consensus 285 ~l~Ga~lll~aD~~~R~i~~p--------~e~pvGiitaliGaP~FiyLl~r~ 329 (334) T COG0609 285 ALLGALLLLLADILARTILAP--------AEIPVGIVTALIGAPYFIYLLRKK 329 (334) T ss_pred HHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999863473--------234589999999999999999986 No 38 >PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed Probab=89.91 E-value=1.1 Score=21.75 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999642122233420232236799999879999 Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFI 242 (351) Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lA 242 (351) -|++....-|||.|+..|+|+++.+..-..+-+... T Consensus 145 ~r~l~~~~fD~~~A~~~Gi~v~~~~~~~~~lial~v 180 (261) T PRK09543 145 WRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTI 180 (261) T ss_pred HHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 999999828999998829988999999999999999 No 39 >COG4779 FepG ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism] Probab=72.88 E-value=5.4 Score=17.60 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=51.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHH--HHHCCCCCHHH Q ss_conf 9999999642122233420232236799999879999999999986644011354315899998898--87347422389 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISI--VILGGMTSLSK 283 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~--vvlGG~gs~~G 283 (351) +.|++|-..--.+.|..+|++++|.++.....+-.+++++=+. ..|-.| .-....-++- .=-.|.+-... T Consensus 226 l~R~lr~lEmGDd~A~~LGV~vertRL~~ilvaV~lta~aTaa-------AGPIaF-IALaAPQiArrL~~t~gv~L~~~ 297 (346) T COG4779 226 LVRRLRLLEMGDDIACALGVSVERTRLLMILVAVALTAAATAA-------AGPIAF-IALAAPQIARRLSGTAGVSLLAA 297 (346) T ss_pred HHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHC-------CCCHHH-HHHCCHHHHHHHHCCCCCHHHHH T ss_conf 9988888760156776517353288899999999999999973-------465345-65523699999735899305888 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780896|r 284 IAKATAILIGVVE 296 (351) Q Consensus 284 a~lGa~~l~~~~~ 296 (351) +..|+.++....- T Consensus 298 almGa~LLlaADl 310 (346) T COG4779 298 ALMGALLLLAADL 310 (346) T ss_pred HHHHHHHHHHHHH T ss_conf 9988799999999 No 40 >TIGR00512 aIF-2BI_fam translation initiation factor, putative, aIF-2BI family; InterPro: IPR005251 This family contains proteins designated as translation initiation factor 2B subunit 1 (alpha) and 5-methylthioribose-1-phosphate isomerase (MTNA, 5.3.1.23 from EC, ). The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. 5-methylthioribose-1-phosphate isomerase (MTNA) participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthio ribulose-1-phosphate . The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.. Probab=70.55 E-value=2 Score=20.25 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=16.7 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 9999999972045653036533578 Q gi|254780896|r 76 IGAYSYVILGSRYGLSIWLLIPVSA 100 (351) Q Consensus 76 ~Gay~~~~l~~~~g~~~~~ai~~a~ 100 (351) +|.|..+++.+++.+||+++.|+|. T Consensus 221 IGTY~lAvlAK~h~IPFyVAAPlST 245 (306) T TIGR00512 221 IGTYGLAVLAKAHNIPFYVAAPLST 245 (306) T ss_pred HHHHHHHHHHHCCCCCCEEECCCCC T ss_conf 6678999998206988334087630 No 41 >pfam08566 Pam17 Mitochondrial import protein Pam17. The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins. Probab=69.78 E-value=6.3 Score=17.18 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=12.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 565303653357889889876544 Q gi|254780896|r 88 YGLSIWLLIPVSAMISGACGMIMG 111 (351) Q Consensus 88 ~g~~~~~ai~~a~~~~a~~g~l~g 111 (351) +|++|.+.+-++.+.++.+|.++| T Consensus 73 ~GlDP~~~~g~~~~a~~~~G~L~G 96 (174) T pfam08566 73 MGLDPFMVLGLATIACGALGWLLG 96 (174) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 385889999999999742557516 No 42 >TIGR01148 mtrC tetrahydromethanopterin S-methyltransferase, subunit C; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane. Probab=67.37 E-value=7.1 Score=16.87 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=40.2 Q ss_pred HCHHHHHHHHHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4322489999999--999999997204565303653357889889876544445432 Q gi|254780896|r 63 LGLLSLNCVIAYA--IGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKF 117 (351) Q Consensus 63 ~G~inl~~g~~~~--~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl 117 (351) +|+.|.|.-+.=+ +++-....+..+..+|-+.+-.++.++++++|.++|....|. T Consensus 73 TGVPSIG~~~LG~G~lAa~~G~a~~~~~~~Pa~a~pi~a~vvaaiiG~v~G~L~~kv 129 (276) T TIGR01148 73 TGVPSIGMMSLGMGILAAVAGLALGGVVTLPAIAAPIIALVVAAIIGAVVGVLAKKV 129 (276) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 886227788877889999999881564014125787999999999999998734641 No 43 >TIGR01113 mtrE tetrahydromethanopterin S-methyltransferase, subunit E; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump.5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane. Probab=65.27 E-value=7.8 Score=16.62 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=36.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999997204565303653357889889876544 Q gi|254780896|r 68 LNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMG 111 (351) Q Consensus 68 l~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g 111 (351) .+++-+.++++-.++.+.+++++|+.+|+.++..+++.+..... T Consensus 56 vsY~l~c~iaG~va~v~m~~~~Lp~~~Ala~Ga~iaA~vH~~yA 99 (298) T TIGR01113 56 VSYGLYCAIAGAVAYVLMSEFGLPPILALAVGAVIAALVHLAYA 99 (298) T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 23678887899999999973273699999999999999999999 No 44 >TIGR00886 2A0108 nitrite transporter; InterPro: IPR004737 This family represents nitrate/nitrite antiporters in bacteria, fungi, algae and marine diatoms. Nitrate transporters in Escherichia coli are involved in excretion of nitrite produced by the dissimilatory reduction of nitrate. NarK is polytopic membrane protein with 12 transmembrane domains which is involved in nitrate uptake and nitrite excretion and is thought to function as a nitrate/nitrite antiporter. At low concentrations of nitrate, NarK mediates the electrogenic excretion of nitrite rather than nitrate/nitrite exchange. This process prevents intracellular accumulation of toxic levels of nitrite and allows further detoxification in the periplasm through the action of nitrite reductase . In the opportunistic fungal pathogen Aspergillus fumigatus the nitrate transporter crnA clusters with nitrite reductase (niiA) and nitrate reductase (niaD). NiaD, niiA and crnA are induced by nitrate and repressed by ammonium at the transcriptional level . In Hebeloma cylindrosporum the nitrate transporter polypeptide (NRT2) is characterised by 12 transmembrane domains and presents both a long putative intracellular loop and a short C-terminal tail, two structural features which distinguish fungal high-affinity transporters from their plant homologues. Transcription is repressed by ammonium and strongly stimulated by nitrate but also by organic nitrogen or nitrogen deficiency. ; GO: 0015103 inorganic anion transmembrane transporter activity, 0015698 inorganic anion transport, 0016021 integral to membrane. Probab=53.95 E-value=12 Score=15.42 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=5.9 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 98799999999999866 Q gi|254780896|r 236 AVSSAFIGMAGAFFAAS 252 (351) Q Consensus 236 ~is~~lAgiaG~l~a~~ 252 (351) .+-+.++|++|+-++.- T Consensus 101 ~~~rlf~Gi~Gg~Fa~~ 117 (472) T TIGR00886 101 LLLRLFIGIAGGSFASC 117 (472) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999996755468876 No 45 >pfam12263 DUF3611 Protein of unknown function (DUF3611). This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important. Probab=49.91 E-value=14 Score=15.03 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHHHHHHHH Q ss_conf 9999999999999999996130599999996--421222334 Q gi|254780896|r 183 MYYVLLGMCFLSASIILWLRRTAISNAWRTI--RDNQKAFFS 222 (351) Q Consensus 183 ~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv--~~n~~aA~~ 222 (351) .++...+++.+..-++|..+.+|+|+++|.- ...|..++. T Consensus 59 l~la~~glv~l~~Si~~~fry~rlg~~L~~~~~~~rP~r~~~ 100 (183) T pfam12263 59 LFLTIIGLIALGFSIFFAFRYTRLGRRLRNPDPAKRPSRADT 100 (183) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH T ss_conf 999999999999999999889999998555888789988999 No 46 >COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism] Probab=46.57 E-value=16 Score=14.71 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999972045653036533578898898765 Q gi|254780896|r 68 LNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMI 109 (351) Q Consensus 68 l~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l 109 (351) .+.+-+.++++-.++.+.+++++|+..++.++..+++.+... T Consensus 62 vsy~l~~avagtVa~vlm~~~~L~~l~Al~lGa~iaA~vH~~ 103 (304) T COG4059 62 VSYGLYCAVAGTVAYVLMSEFGLPPLFALALGAGIAACVHGT 103 (304) T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 510111346578899999872873999999987899999888 No 47 >TIGR02069 cyanophycinase cyanophycinase; InterPro: IPR011811 This entry describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.; GO: 0016787 hydrolase activity, 0044260 cellular macromolecule metabolic process. Probab=45.36 E-value=11 Score=15.71 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 999999999999961305999999964212 Q gi|254780896|r 188 LGMCFLSASIILWLRRTAISNAWRTIRDNQ 217 (351) Q Consensus 188 ~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~ 217 (351) ++++--++.=..|=+|-|+||-++|+.+|| T Consensus 190 LGl~~~v~iDQHF~~RgRlGRLl~Ai~~~P 219 (297) T TIGR02069 190 LGLLKDVLIDQHFAQRGRLGRLLSAIAQNP 219 (297) T ss_pred CCCCCCCEEEECHHHCCHHHHHHHHHHHCC T ss_conf 731687437306110224899999997378 No 48 >pfam03137 OATP Organic Anion Transporter Polypeptide (OATP) family. This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. Thi Probab=41.29 E-value=19 Score=14.21 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=8.4 Q ss_pred HHHHH-HHHHHHHHHHH Q ss_conf 89999-99999999999 Q gi|254780896|r 68 LNCVI-AYAIGAYSYVI 83 (351) Q Consensus 68 l~~g~-~~~~Gay~~~~ 83 (351) +|.|. .+++|....++ T Consensus 71 ig~G~~l~~lG~~l~al 87 (582) T pfam03137 71 IGIGLLIMALGSLLTAL 87 (582) T ss_pred EEHHHHHHHHHHHHHHH T ss_conf 00989999999999976 No 49 >COG4061 MtrC Tetrahydromethanopterin S-methyltransferase, subunit C [Coenzyme metabolism] Probab=39.75 E-value=21 Score=14.07 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=30.6 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999720456530365335788988987654444543213457777 Q gi|254780896|r 81 YVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIA 125 (351) Q Consensus 81 ~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~~~~i~ 125 (351) .......+.+|-|.+-.++..+++++|.++|....|.-+.-.+|. T Consensus 88 ~gla~~~ftlp~laapIi~~I~aaviG~vvgvL~~kvv~MkIPIm 132 (262) T COG4061 88 AGLAIPYFTLPALAAPIIGLIVAAVIGAVVGVLTVKVVGMKIPIM 132 (262) T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH T ss_conf 986232466268888899999999999999875133102577389 No 50 >pfam05957 DUF883 Bacterial protein of unknown function (DUF883). This family consists of several hypothetical bacterial proteins of unknown function. Probab=38.61 E-value=21 Score=13.96 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=14.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 65303653357889889876544 Q gi|254780896|r 89 GLSIWLLIPVSAMISGACGMIMG 111 (351) Q Consensus 89 g~~~~~ai~~a~~~~a~~g~l~g 111 (351) .-+||-++-++..+|.++|++++ T Consensus 70 ~~~Pw~svgiAagvG~llG~Ll~ 92 (94) T pfam05957 70 HENPWQAVGIAAGVGLLLGLLLA 92 (94) T ss_pred HHCCHHHHHHHHHHHHHHHHHHH T ss_conf 87929999999999999999982 No 51 >COG4575 ElaB Uncharacterized conserved protein [Function unknown] Probab=37.18 E-value=23 Score=13.82 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=16.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 565303653357889889876544 Q gi|254780896|r 88 YGLSIWLLIPVSAMISGACGMIMG 111 (351) Q Consensus 88 ~g~~~~~ai~~a~~~~a~~g~l~g 111 (351) .+-+||-++-++..+|.++|++++ T Consensus 79 V~e~PWq~VGvaAaVGlllGlLls 102 (104) T COG4575 79 VRENPWQGVGVAAAVGLLLGLLLS 102 (104) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 872883388999999999999980 No 52 >KOG3385 consensus Probab=37.08 E-value=22 Score=13.84 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 421222334202322367999998799 Q gi|254780896|r 214 RDNQKAFFSLNTTIIFAKLSAFAVSSA 240 (351) Q Consensus 214 ~~n~~aA~~~Ginv~~~~~~af~is~~ 240 (351) +||+++++.++=.|++.|..++-|+-= T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~E 58 (118) T KOG3385 32 RENEEAAESLQQKVKALKSLSLDIGDE 58 (118) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 535999999999999999988774220 No 53 >PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional Probab=34.61 E-value=25 Score=13.57 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 03653357889889876544445 Q gi|254780896|r 92 IWLLIPVSAMISGACGMIMGLPS 114 (351) Q Consensus 92 ~~~ai~~a~~~~a~~g~l~g~~~ 114 (351) .|+...+++++|.++|++.++.. T Consensus 2 ~W~~ali~lvvGiiIG~~~~R~~ 24 (134) T PRK11677 2 TWEYALIGLVVGIIIGAVAMRFG 24 (134) T ss_pred CHHHHHHHHHHHHHHHHHHHHHC T ss_conf 28999999999999999999981 No 54 >PRK10404 hypothetical protein; Provisional Probab=33.31 E-value=26 Score=13.44 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=14.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 65303653357889889876544 Q gi|254780896|r 89 GLSIWLLIPVSAMISGACGMIMG 111 (351) Q Consensus 89 g~~~~~ai~~a~~~~a~~g~l~g 111 (351) .-+||-++-++..+|.++|+++. T Consensus 77 hdnPW~aVGiaA~vGlvlGlLl~ 99 (101) T PRK10404 77 HEKPWQGIGVGAAVGLVLGLLLA 99 (101) T ss_pred HCCCCHHHHHHHHHHHHHHHHHH T ss_conf 84972999999999999999983 No 55 >KOG2447 consensus Probab=31.63 E-value=28 Score=13.27 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=35.6 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 43333100148999999999999999999996130599999996421222334202322367999998799999999999 Q gi|254780896|r 170 FRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFF 249 (351) Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~ 249 (351) |+.+...........+..+++.-+..++..|.+ +|+|++-.-...+..-+..+|++|++. T Consensus 188 Fr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~k--------------------lg~Nv~n~pss~~s~~~Fh~gi~g~~v 247 (287) T KOG2447 188 FRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLK--------------------LGANVSNFPSSPTSTLGFHAGIAGILV 247 (287) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 349976765236777889999999999999998--------------------645540577787411114457989999 Q ss_pred HHHHHEECCCCC Q ss_conf 866440113543 Q gi|254780896|r 250 AASRDRISPDMF 261 (351) Q Consensus 250 a~~~~~v~p~~~ 261 (351) -...-..+-++| T Consensus 248 L~f~yWlqlsmF 259 (287) T KOG2447 248 LFFVYWLQLSMF 259 (287) T ss_pred HHHHHHHHHHHH T ss_conf 999999887899 No 56 >PRK10132 hypothetical protein; Provisional Probab=29.62 E-value=30 Score=13.06 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=11.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 530365335788988987654 Q gi|254780896|r 90 LSIWLLIPVSAMISGACGMIM 110 (351) Q Consensus 90 ~~~~~ai~~a~~~~a~~g~l~ 110 (351) -+||-++-++..+|.++|+++ T Consensus 84 enPW~sVGigAAVGvvlG~LL 104 (108) T PRK10132 84 ERPWCSVGTAAAVGIFIGALL 104 (108) T ss_pred CCCCHHHHHHHHHHHHHHHHH T ss_conf 489504769999999999999 No 57 >COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism] Probab=29.17 E-value=31 Score=13.01 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCH Q ss_conf 248999999999999999720456530 Q gi|254780896|r 66 LSLNCVIAYAIGAYSYVILGSRYGLSI 92 (351) Q Consensus 66 inl~~g~~~~~Gay~~~~l~~~~g~~~ 92 (351) .-++.+-=|++-||.++......++++ T Consensus 75 ~P~alapgmglnAfFaftvv~~~gi~w 101 (436) T COG2252 75 LPIALAPGMGLNAFFAFTVVLGMGLSW 101 (436) T ss_pred CCHHHCCHHHHHHHHHHHHHHHCCCCH T ss_conf 716644356699999999998569969 No 58 >TIGR00739 yajC preprotein translocase, YajC subunit; InterPro: IPR003849 This entry describes proteins of unknown function.. Probab=29.03 E-value=31 Score=13.00 Aligned_cols=15 Identities=13% Similarity=0.707 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 999999999998589 Q gi|254780896|r 323 LMVIALFLVILMRSH 337 (351) Q Consensus 323 l~~~~lilvll~rP~ 337 (351) +...+++.++++||| T Consensus 10 v~~~~~FYFl~~RPQ 24 (86) T TIGR00739 10 VLIFLIFYFLIIRPQ 24 (86) T ss_pred HHHHHHHHHHHCCHH T ss_conf 999999999704977 No 59 >PRK12277 50S ribosomal protein L13e; Provisional Probab=26.38 E-value=25 Score=13.52 Aligned_cols=25 Identities=12% Similarity=-0.027 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999642122233420232236799 Q gi|254780896|r 209 AWRTIRDNQKAFFSLNTTIIFAKLS 233 (351) Q Consensus 209 ~lrAv~~n~~aA~~~Ginv~~~~~~ 233 (351) .++|++-|.+-|+.+||.++.-+-. T Consensus 39 ELkaaGl~~~~Ar~lGI~VD~RRk~ 63 (84) T PRK12277 39 ELEAVGLDVKKARKLGLRIDKRRKT 63 (84) T ss_pred HHHHCCCCHHHHHHCCCCCCCCCCC T ss_conf 9998289999998718601452355 No 60 >COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Probab=25.57 E-value=26 Score=13.46 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=3.6 Q ss_pred HHHHHHHHHHH Q ss_conf 42122233420 Q gi|254780896|r 214 RDNQKAFFSLN 224 (351) Q Consensus 214 ~~n~~aA~~~G 224 (351) .||-++-+.+| T Consensus 130 ~ED~e~n~~iG 140 (346) T COG0182 130 EEDLEANRAIG 140 (346) T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 61 >TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection .. Probab=23.56 E-value=39 Score=12.39 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 01489999999999999999999961305 Q gi|254780896|r 177 VIYEIFMYYVLLGMCFLSASIILWLRRTA 205 (351) Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~l~rT~ 205 (351) ..+.....+.+++.++++.+-+|++||-| T Consensus 274 ~PyGIAAlVLi~L~V~LIiLYIWLYrRRK 302 (315) T TIGR01478 274 LPYGIAALVLIILTVVLIILYIWLYRRRK 302 (315) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 13589999999999999999888856403 No 62 >PTZ00270 variable surface protein Vir32; Provisional Probab=22.97 E-value=20 Score=14.11 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 9999999999999961305999999964 Q gi|254780896|r 187 LLGMCFLSASIILWLRRTAISNAWRTIR 214 (351) Q Consensus 187 ~~~~~~~~~~l~~~l~rT~~G~~lrAv~ 214 (351) ++++++....--..+|.||+|+++|--. T Consensus 275 lLGVV~TsmTSGALYrfTPlG~~irn~~ 302 (333) T PTZ00270 275 LLGVVATSMTSGALYKFTPLGRMLRNGF 302 (333) T ss_pred EEEEEHHHHHCHHHHHCCCHHHHHHHCC T ss_conf 4321002210003653275189988504 No 63 >PRK10490 sensor protein KdpD; Provisional Probab=22.13 E-value=41 Score=12.21 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999 Q gi|254780896|r 43 GIQILIYVMFAWGLSIVVG 61 (351) Q Consensus 43 ~~~~~i~~l~alGl~li~G 61 (351) ....++|.+..+...+.+| T Consensus 426 aNivmlYLL~Vv~vAl~~G 444 (895) T PRK10490 426 ANLVMLYLLGVVVIALFYG 444 (895) T ss_pred HHHHHHHHHHHHHHHHHHC T ss_conf 1499999999999999946 No 64 >COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism] Probab=21.70 E-value=42 Score=12.16 Aligned_cols=42 Identities=5% Similarity=0.074 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999996421222334202322367999998799999999999 Q gi|254780896|r 208 NAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFF 249 (351) Q Consensus 208 ~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~ 249 (351) +.+--..-.+|.|..+|+|.+|.....-.+-+.+.+++-++- T Consensus 198 ~~LDVl~LgRd~AinLGi~y~k~~~~lL~ivavLvsvSTALV 239 (316) T COG4605 198 KVLDVLSLGRDTAINLGIDYEKVTKILLLIVAVLVSVSTALV 239 (316) T ss_pred HHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 750263337666765186268878899999999999999884 No 65 >COG4854 Predicted membrane protein [Function unknown] Probab=21.47 E-value=43 Score=12.13 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=26.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99996421222334202322367999998799999999999866 Q gi|254780896|r 209 AWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAAS 252 (351) Q Consensus 209 ~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~ 252 (351) +.+-+-|||..-+..-...+| ...+|.+|.+++|.. +.+.. T Consensus 51 Rv~~vvEDER~lrvse~aSr~-TiqV~~is~Al~gav--l~a~k 91 (126) T COG4854 51 RVDEVVEDERTLRVSERASRR-TIQVFSISAALGGAV--LLALK 91 (126) T ss_pred HHHHHHHHHHHHHHHHHHHHE-EEEEEEEHHHHHHHH--HHHHC T ss_conf 999885258898888753002-578888469888899--99726 No 66 >COG3763 Uncharacterized protein conserved in bacteria [Function unknown] Probab=20.36 E-value=45 Score=11.99 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=14.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 30365335788988987654444543 Q gi|254780896|r 91 SIWLLIPVSAMISGACGMIMGLPSLK 116 (351) Q Consensus 91 ~~~~ai~~a~~~~a~~g~l~g~~~~r 116 (351) +.|+++ +.+.++.++|++.|+...| T Consensus 2 ~l~lai-l~ivl~ll~G~~~G~fiar 26 (71) T COG3763 2 SLWLAI-LLIVLALLAGLIGGFFIAR 26 (71) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH T ss_conf 028999-9999999999999999999 Done!