HHsearch alignment for GI: 254780896 and conserved domain: pfam02653
>pfam02653 BPD_transp_2 Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Probab=100.00 E-value=5.1e-43 Score=279.13 Aligned_cols=263 Identities=22% Similarity=0.248 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999843224899999999999999972045653036533578898898765444454321
Q gi|254780896|r 39 IDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFR 118 (351)
Q Consensus 39 ~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~ 118 (351)
T Consensus 2 l~~~l~~~~i~~l~Alg~~l~~-~~G~in~a~g~~~~lgay~~~~l~~~~~~~~~~~~~~a~~~~~~~g~i~~~~~~r~~ 80 (267)
T pfam02653 2 LLNILTQAAILGIAALGLTLVF-IAGVINLGVGGFMALGAYVAALLLALGGSNLWLALLAGLLVGAAVGLLNGLLVVRLK 80 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8899999999999999999999-978835799999999999999999980530899999999999999997458676521
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 345777799988989999985-5540587678857765211212347643434333310014899999999999999999
Q gi|254780896|r 119 GDYLAIATLIMSEIFQNILIK-WKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASI 197 (351)
Q Consensus 119 g~~~~i~Tl~~~~i~~~~~~~-~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (351)
T Consensus 81 ~~~~~-~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (267)
T pfam02653 81 VPEVI-VTLLLNFILRGLTLFLLTGILGGPAGTSTIVD---------------LLGFPGLFLSFGFGVIFLLALLLALLV 144 (267)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42999-99999999999999998635578877555532---------------554200211257999999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99961305999999964212223342023223679999987999999999998664401135431589999889887347
Q gi|254780896|r 198 ILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGG 277 (351)
Q Consensus 198 ~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG 277 (351)
T Consensus 145 ~~~l~~T~~G~~lrAv~~n~~aA~~~GI~~~~~~~~~f~is~~laglaG~l~~~~~~~~~p~-~~~~~~~~~~~~~viGG 223 (267)
T pfam02653 145 WLLLRRTRFGRALRAVGENPRAARYAGINVKRTKILAFVLSGALAGLAGALLVLSTGSADPN-AGLGLGFDAIAAVVLGG 223 (267)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHEEEECC
T ss_conf 99999588846999996659999886998899999999999999999999999883564878-42769989775101689
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 42238999999999999999987312210000123444202589999999999
Q gi|254780896|r 278 MTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFL 330 (351)
Q Consensus 278 ~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lil 330 (351)
T Consensus 224 ~gs~~G~~~ga~~lg~~~~~~~~~~g-----------~~~~~~~~i~g~ill~ 265 (267)
T pfam02653 224 AGSPIGAIVGALIIGLLQSLGLTLLG-----------IPPELSLLVQGAILIA 265 (267)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHE
T ss_conf 99629999999999999999999829-----------9889999999865113